Citrus Sinensis ID: 032655

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHEEEccccc
Coil and Loop (DISEMBL)
MREEEIEKLRGLVRDCVSKHLYSSAIFFANEvaaltndpadVYMQAQALFLgrhyrrpfhllnsskiVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT
Flexible Loop (DISEMBL)
MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLlnsskivlrDLRFRYLAAKCleelrsgtsvcRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT
Low Complexity Region (SEG)
MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT
Disordered region (IsUnstruct)
********LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD***
Disordered Region (DISOPRED)
****EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT
Disordered Region (DISEMBL)
********LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT
Disordered Region (DISPRO)
*REEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
B3DNN5	543	Anaphase-promoting comple	yes	no	0.919	0.230	0.651	6e-48
Q13042	620	Cell division cycle prote	yes	no	0.852	0.187	0.335	1e-09
Q8R349	620	Cell division cycle prote	yes	no	0.852	0.187	0.342	1e-09
P09798	840	Anaphase-promoting comple	yes	no	0.882	0.142	0.258	0.0004

>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1

 Score =  189 bits (479), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 113/155 (72%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREEEIEK+RG+VRDCVSKHLYSSAIFFA++VAALTNDP+D+YMQAQALFLGRHYRR FH
Sbjct: 1   MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVLRDLRFRYLAAKCLEEL+      +C +ML   K+                 
Sbjct: 61  LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDDDGIVYDAKDGNVIDF 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRGKAY AL N +QAR W
Sbjct: 118 DKDGEDREINISSAICFLRGKAYGALQNRSQARQW 152

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 27/143 (18%)

Query: 6   IEKLRGLVRDCVSKHLYSSAIFFANEVAALT-NDPADVYMQAQALFLGRHYRRPFHLLNS 64
           +E+LR  VR  + +  Y SA+F+A++VA+L+  +P D+Y  AQ L+L   Y R  H L S
Sbjct: 3   LERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query: 65  SKIVLRDLRFRYLAAKC---------------LEE----------LRSGTSVCRCSVMLR 99
            K+       RYLAA+C               +EE          L+  +     S    
Sbjct: 63  RKLDKLYEACRYLAARCHYAAKEHQQALDVLDMEEPINKRLFEKYLKDESGFKDPSSDWE 122

Query: 100 LLK-MISSAICFLRGKAYEALGN 121
           + +  I S+IC LRGK Y+AL N
Sbjct: 123 MSQSSIKSSICLLRGKIYDALDN 145

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 27/143 (18%)

Query: 6   IEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNS 64
           +E LR  VR  + +  Y SA+F+A++VA+L+++ P DVY  AQ L+L   Y R  H L S
Sbjct: 3   LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62

Query: 65  SKIVLRDLRFRYLAAKC---------------LEE----------LRSGTSVCRCSVMLR 99
            K+       RYLAA+C               +EE          L+        S    
Sbjct: 63  RKLDKLYEACRYLAARCHYAAKEHQQALDILDMEEPINRRLFEKYLKDDNGSRDPSSDWE 122

Query: 100 LLK-MISSAICFLRGKAYEALGN 121
           + +  I S+IC LRGK Y+AL N
Sbjct: 123 MSQSSIKSSICLLRGKIYDALDN 145

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 31/151 (20%)

Query: 6   IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS 65
           IE+LR    D + +H+Y +A + A++V  ++NDP D +   Q  +    Y R   L+  +
Sbjct: 230 IERLRLWRFDALMQHMYRTAEYIADKVYNISNDPDDAFWLGQVYYNNNQYVRAVELITRN 289

Query: 66  KIVLRDLRFRYLAAKCLEELR-------------------SGTSVCRCSVMLRL------ 100
            +   ++  RYL      +L+                   S T+    S           
Sbjct: 290 NLDGVNILCRYLLGLSFVKLQRFDDALDVIGEYNPFSEDPSTTAANTMSNNGNNSNTSQP 349

Query: 101 -----LKMISSAICFLRGKAYEALGNCAQAR 126
                +KM  S++CFLRGK Y A  N  +AR
Sbjct: 350 VTDGGIKM-ESSLCFLRGKIYFAQNNFNKAR 379

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
297839749	543	cell division cycle family protein [Arab	0.919	0.230	0.658	3e-46
3834317	521	Similar to CDC16 protein gb|U18291 (CDC1	0.919	0.239	0.651	4e-46
18412102	543	anaphase-promoting complex subunit 6 [Ar	0.919	0.230	0.651	5e-46
22324595	542	anaphase promoting complex/cyclosome sub	0.919	0.230	0.651	5e-46
225461701	545	PREDICTED: anaphase-promoting complex su	0.919	0.229	0.651	9e-46
356517052	545	PREDICTED: anaphase-promoting complex su	0.919	0.229	0.651	1e-45
255565311	655	cell division cycle, putative [Ricinus c	0.919	0.190	0.645	1e-45
356545461	547	PREDICTED: anaphase-promoting complex su	0.919	0.228	0.651	2e-45
255578574	469	cell division cycle, putative [Ricinus c	0.919	0.266	0.638	3e-45
224116978	542	predicted protein [Populus trichocarpa]	0.919	0.230	0.632	3e-44

>gi|297839749|ref|XP_002887756.1| cell division cycle family protein [Arabidopsis lyrata subsp. lyrata] gi|297333597|gb|EFH64015.1| cell division cycle family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/155 (65%), Positives = 113/155 (72%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREEEIEK+RG+VRDCVSKHLYSSAIFFA++VAALTNDPAD+YMQAQALFLGRHYRR FH
Sbjct: 1   MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPADIYMQAQALFLGRHYRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVLRDLRFRYLAAKCLEEL+      +C +ML   K+                 
Sbjct: 61  LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDEDGIVYDAKDGNVIDF 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRGKAY AL N +QAR W
Sbjct: 118 DKDGEDREINISSAICFLRGKAYGALQNRSQARQW 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3834317|gb|AAC83033.1| Similar to CDC16 protein gb|U18291 (CDC16Hs) from Homo sapiens [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 113/155 (72%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREEEIEK+RG+VRDCVSKHLYSSAIFFA++VAALTNDP+D+YMQAQALFLGRHYRR FH
Sbjct: 1   MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVLRDLRFRYLAAKCLEEL+      +C +ML   K+                 
Sbjct: 61  LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDDDGIVYDAKDGNVIDF 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRGKAY AL N +QAR W
Sbjct: 118 DKDGEDREINISSAICFLRGKAYGALQNRSQARQW 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412102|ref|NP_565188.1| anaphase-promoting complex subunit 6 [Arabidopsis thaliana] gi|302595634|sp|B3DNN5.1|CDC16_ARATH RecName: Full=Anaphase-promoting complex subunit 6; AltName: Full=Cell division cycle protein 16 homolog; Short=CDC16 homolog; AltName: Full=Cyclosome subunit 6; AltName: Full=Protein NOMEGA gi|190016006|gb|ACE62891.1| At1g78770 [Arabidopsis thaliana] gi|332198027|gb|AEE36148.1| anaphase-promoting complex subunit 6 [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 113/155 (72%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREEEIEK+RG+VRDCVSKHLYSSAIFFA++VAALTNDP+D+YMQAQALFLGRHYRR FH
Sbjct: 1   MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVLRDLRFRYLAAKCLEEL+      +C +ML   K+                 
Sbjct: 61  LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDDDGIVYDAKDGNVIDF 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRGKAY AL N +QAR W
Sbjct: 118 DKDGEDREINISSAICFLRGKAYGALQNRSQARQW 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22324595|gb|AAM95623.1| anaphase promoting complex/cyclosome subunit [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 113/155 (72%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREEEIEK+RG+VRDCVSKHLYSSAIFFA++VAALTNDP+D+YMQAQALFLGRHYRR FH
Sbjct: 1   MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVLRDLRFRYLAAKCLEEL+      +C +ML   K+                 
Sbjct: 61  LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDDDGIVYDAKDGNVIDF 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRGKAY AL N +QAR W
Sbjct: 118 DKDGEDREINISSAICFLRGKAYGALQNRSQARQW 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461701|ref|XP_002283201.1| PREDICTED: anaphase-promoting complex subunit 6 [Vitis vinifera] gi|302142883|emb|CBI20178.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 113/155 (72%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREEEIEKLRG+VRDC+SKHLYSSAIFFA++VAA T+DPAD+YMQAQALFLGRHYRR FH
Sbjct: 1   MREEEIEKLRGVVRDCLSKHLYSSAIFFADKVAAFTSDPADIYMQAQALFLGRHYRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+S+IVLRDLRFRYLAAKCLEE +      +C +ML   K+                 
Sbjct: 61  LLNASQIVLRDLRFRYLAAKCLEEQKEWD---QCLLMLGDAKVDEHGNVNDTKDCNVMYL 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRGKAYEAL N AQARLW
Sbjct: 118 DKEGEDREINISSAICFLRGKAYEALENRAQARLW 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517052|ref|XP_003527204.1| PREDICTED: anaphase-promoting complex subunit 6-like [Glycine max]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 111/155 (71%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREEE+EKLRG+VRDCVSKHLYSSAIFFA++VAA T DPAD+YMQAQALFLGRHYRR FH
Sbjct: 1   MREEEMEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVL DLRFRYLAAKCLEEL+      +C  ML   K+                 
Sbjct: 61  LLNASKIVLTDLRFRYLAAKCLEELKEWD---QCLSMLGEAKVDDDGNVYDMKDSNVMYL 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRGKAYEAL N AQAR+W
Sbjct: 118 DKDCEDREINISSAICFLRGKAYEALENRAQARMW 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565311|ref|XP_002523647.1| cell division cycle, putative [Ricinus communis] gi|223537099|gb|EEF38733.1| cell division cycle, putative [Ricinus communis]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 112/155 (72%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREE+IEKLRG+VRDCVSKHLYSSAIFFA++VA  TNDPAD+YMQAQALFLGRHYRR FH
Sbjct: 1   MREEQIEKLRGVVRDCVSKHLYSSAIFFADKVATFTNDPADIYMQAQALFLGRHYRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVLRDLRFRYLAAKCLEEL+      +C +ML   K+                 
Sbjct: 61  LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDEHGNVFDTKECNVMYL 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRG+AYEAL N +QAR W
Sbjct: 118 DKDGEDREINISSAICFLRGRAYEALENRSQARQW 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545461|ref|XP_003541161.1| PREDICTED: anaphase-promoting complex subunit 6-like [Glycine max]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 111/155 (71%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREEE+EKLRG+VRDCVSKHLYSSAIFFA++VAA T DPAD+YMQAQALFLGRHYRR FH
Sbjct: 1   MREEEMEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVL DLRFRYLAAKCLEEL+      +C  ML   K+                 
Sbjct: 61  LLNASKIVLTDLRFRYLAAKCLEELKEWD---QCLSMLGEAKVDDDGNVYDMKDSNVMYL 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRGKA+EAL N AQARLW
Sbjct: 118 DKDCEDREINISSAICFLRGKAFEALENRAQARLW 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578574|ref|XP_002530149.1| cell division cycle, putative [Ricinus communis] gi|223530348|gb|EEF32241.1| cell division cycle, putative [Ricinus communis]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/155 (63%), Positives = 112/155 (72%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREE+IEKLRG+VRDCVSKHLYSSAIFFA++VA  TNDPAD+YMQAQALFLGRH+RR FH
Sbjct: 1   MREEQIEKLRGVVRDCVSKHLYSSAIFFADKVATFTNDPADIYMQAQALFLGRHFRRAFH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVLRDLRFRYLAAKCLEEL+      +C +ML   K+                 
Sbjct: 61  LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDEHGNVFDTKECNVIYL 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     ISSAICFLRG+AYEAL N +QAR W
Sbjct: 118 DKDGEDREINISSAICFLRGRAYEALENRSQARQW 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116978|ref|XP_002331799.1| predicted protein [Populus trichocarpa] gi|222874495|gb|EEF11626.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 111/155 (71%), Gaps = 30/155 (19%)

Query: 1   MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
           MREE+IEKLRG+VRDCVSKHLYSSAIFFA++VAA TNDPAD+YMQAQALFLGRHYRR +H
Sbjct: 1   MREEQIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAYH 60

Query: 61  LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
           LLN+SKIVLRDLRFRYLAAKCLEEL+      +C +ML   K+                 
Sbjct: 61  LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDEHGDVYDTKDCNVMYL 117

Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
                     IS+A CFLRG+AYEAL N A AR W
Sbjct: 118 DKDSEDREINISAATCFLRGRAYEALENRALARQW 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2037523	543	APC6 "anaphase promoting compl	0.786	0.197	0.745	8.6e-47
UNIPROTKB|Q13042	620	CDC16 "Cell division cycle pro	0.558	0.122	0.415	4.1e-13
UNIPROTKB|E1BPM5	620	CDC16 "Uncharacterized protein	0.558	0.122	0.428	1.9e-09
UNIPROTKB|F1P4A5	623	CDC16 "Uncharacterized protein	0.558	0.121	0.415	4.1e-09
UNIPROTKB|E2R5H6	620	CDC16 "Uncharacterized protein	0.558	0.122	0.415	5.2e-09
MGI|MGI:1917207	620	Cdc16 "CDC16 cell division cyc	0.558	0.122	0.428	8.5e-09
RGD|1305076	620	Cdc16 "cell division cycle 16"	0.558	0.122	0.428	8.5e-09
ZFIN|ZDB-GENE-051113-132	616	cdc16 "cell division cycle 16	0.558	0.123	0.389	1.4e-08
UNIPROTKB|G4N150	664	MGG_07440 "Anaphase-promoting	0.544	0.111	0.391	6.4e-08
FB|FBgn0025781	719	Cdc16 "Cell division cycle 16	0.426	0.080	0.372	2.2e-07

TAIR|locus:2037523 APC6 "anaphase promoting complex 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 82/110 (74%), Positives = 94/110 (85%)

Query:     1 MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
             MREEEIEK+RG+VRDCVSKHLYSSAIFFA++VAALTNDP+D+YMQAQALFLGRHYRR FH
Sbjct:     1 MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query:    61 LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICF 110
             LLN+SKIVLRDLRFRYLAAKCLEEL+      +C +ML   K+    I +
Sbjct:    61 LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDDDGIVY 107

GO:0005634 "nucleus" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0007276 "gamete generation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q13042 CDC16 "Cell division cycle protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:     6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNS 64
             +E+LR  VR  + +  Y SA+F+A++VA+L+ + P D+Y  AQ L+L   Y R  H L S
Sbjct:     3 LERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKC 81
              K+       RYLAA+C
Sbjct:    63 RKLDKLYEACRYLAARC 79

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0005819 "spindle" evidence=TAS

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BPM5 CDC16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 33/77 (42%), Positives = 48/77 (62%)

Query:     6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS 64
             +E+LR  VR  + +  Y SA+F+A++VA+L++ DP D+Y  AQ L+L   Y R  H L S
Sbjct:     3 LERLRKRVRQYLDQQQYQSALFWADKVASLSHEDPRDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKC 81
              K+       RYLAA+C
Sbjct:    63 RKLDKLYEACRYLAARC 79

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|F1P4A5 CDC16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 145 (56.1 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:     6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNS 64
             +E+LR  VR  + +  Y SA+F+A++VA+L+++ P D+Y  AQ L+L   Y R  H L S
Sbjct:     3 LERLRKRVRHYIDQQQYQSALFWADKVASLSHEEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKC 81
              K+       RYLAA+C
Sbjct:    63 RKLDKLYEACRYLAARC 79

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|E2R5H6 CDC16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 144 (55.7 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:     6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNS 64
             +E+LR  VR  + +  Y SA+F+A++VA+L+++ P D+Y  AQ L+L   Y R  H L S
Sbjct:     3 LERLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKC 81
              K+       RYLAA+C
Sbjct:    63 RKLDKLYEACRYLAARC 79

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

MGI|MGI:1917207 Cdc16 "CDC16 cell division cycle 16" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query:     6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNS 64
             +E LR  VR  + +  Y SA+F+A++VA+L+++ P DVY  AQ L+L   Y R  H L S
Sbjct:     3 LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKC 81
              K+       RYLAA+C
Sbjct:    63 RKLDKLYEACRYLAARC 79

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

RGD|1305076 Cdc16 "cell division cycle 16" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query:     6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNS 64
             +E LR  VR  + +  Y SA+F+A++VA+L+++ P DVY  AQ L+L   Y R  H L S
Sbjct:     3 LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKC 81
              K+       RYLAA+C
Sbjct:    63 RKLDKLYEACRYLAARC 79

GO:0005634 "nucleus" evidence=ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

ZFIN|ZDB-GENE-051113-132 cdc16 "cell division cycle 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:     6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS 64
             +++LR  VR  + +  Y SA+F+A+++A+L++ DP D+Y  AQ L+L   Y R  H L S
Sbjct:     3 LDRLRKRVRHYIDQQQYQSALFWADKIASLSHEDPQDIYWLAQCLYLTAQYHRASHALRS 62

Query:    65 SKIVLRDLRFRYLAAKC 81
              K+       +YLAA+C
Sbjct:    63 RKLDKLYGACQYLAARC 79

GO:0007049 "cell cycle" evidence=IMP

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|G4N150 MGG_07440 "Anaphase-promoting complex subunit cut9" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 122 (48.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:     9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIV 68
             LR   +D ++K  Y SAIF  +++ A+T D  D +  AQ  F    Y R   LL+ S +V
Sbjct:     5 LRDWRQDALNKAQYESAIFVGDKLLAITGDDKDAFWLAQVHFASGSYTRAQALLSKSDLV 64

Query:    69 LRDLRFRYLAAKCL 82
              R+   RYL+A CL
Sbjct:    65 SRNPSCRYLSAHCL 78

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0025781 Cdc16 "Cell division cycle 16 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 105 (42.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query:    10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI 67
             R LV+  +    YS+A+F+A +VA L   +P D+Y QAQ ++L   Y R  H +   K+
Sbjct:    23 RQLVKQFIDMRRYSTALFWAEKVAVLGGLEPRDIYYQAQCMYLLGEYHRAAHTIQHHKL 81

GO:0005680 "anaphase-promoting complex" evidence=ISS;NAS

GO:0000090 "mitotic anaphase" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0007049 "cell cycle" evidence=IMP

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0045842 "positive regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0090302 "mitotic anaphase-promoting complex activity" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	7e-12

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 56.9 bits (138), Expect = 7e-12
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLA 78
          +  Y +AIF A ++ ALT    D Y+ AQ  FL   Y+R + LL   K+       RYL 
Sbjct: 2  QGNYENAIFLAEKLLALTPSNEDAYLLAQCYFLQGQYKRAYELLRKLKLDNS-SGCRYLL 60

Query: 79 AKCLEEL 85
          A+CL +L
Sbjct: 61 AQCLLKL 67

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.89
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.61
KOG1126	638	consensus DNA-binding cell division cycle control	99.33
PRK15359	144	type III secretion system chaperone protein SscB;	99.28
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.26
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.25
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.23
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.21
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.17
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.16
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.11
PRK12370	553	invasion protein regulator; Provisional	99.09
PRK15359	144	type III secretion system chaperone protein SscB;	99.08
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.08
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.04
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.04
PRK11189	296	lipoprotein NlpI; Provisional	99.04
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.03
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.01
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.99
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.97
PRK12370	553	invasion protein regulator; Provisional	98.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.96
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.92
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.91
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.9
PRK11189	296	lipoprotein NlpI; Provisional	98.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.88
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.87
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.82
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.81
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.8
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.79
KOG0553	304	consensus TPR repeat-containing protein [General f	98.76
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.75
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.74
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.69
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.68
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.66
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.65
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.61
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.58
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.58
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.57
KOG1126	638	consensus DNA-binding cell division cycle control	98.54
PLN02789	320	farnesyltranstransferase	98.54
PRK15331	165	chaperone protein SicA; Provisional	98.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.5
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.47
PRK10803	263	tol-pal system protein YbgF; Provisional	98.47
PRK15331	165	chaperone protein SicA; Provisional	98.45
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.45
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.44
KOG1129	478	consensus TPR repeat-containing protein [General f	98.41
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.4
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.4
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.38
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.37
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.37
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.36
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.33
PRK14574	822	hmsH outer membrane protein; Provisional	98.33
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.31
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.26
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.25
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.24
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.22
PF13371	73	TPR_9: Tetratricopeptide repeat	98.22
KOG1129	478	consensus TPR repeat-containing protein [General f	98.21
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.21
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.21
KOG2003	840	consensus TPR repeat-containing protein [General f	98.2
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.18
PRK10803	263	tol-pal system protein YbgF; Provisional	98.17
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.13
PLN02789	320	farnesyltranstransferase	98.13
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.13
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.13
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.12
KOG0553	304	consensus TPR repeat-containing protein [General f	98.12
PF12688	120	TPR_5: Tetratrico peptide repeat	98.11
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.1
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.1
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.09
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.06
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.05
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.04
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.04
KOG2076	895	consensus RNA polymerase III transcription factor	98.04
PRK14574	822	hmsH outer membrane protein; Provisional	98.03
PF12688	120	TPR_5: Tetratrico peptide repeat	98.03
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.01
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.99
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.99
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.95
KOG1125	579	consensus TPR repeat-containing protein [General f	97.94
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.91
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.9
KOG1125	579	consensus TPR repeat-containing protein [General f	97.88
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.86
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.85
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.85
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.83
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.83
KOG2076	895	consensus RNA polymerase III transcription factor	97.83
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.81
PF13512	142	TPR_18: Tetratricopeptide repeat	97.81
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.8
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.77
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.76
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.73
PF04049	142	APC8: Anaphase promoting complex subunit 8 / Cdc23	97.7
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.69
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.68
PF13371	73	TPR_9: Tetratricopeptide repeat	97.68
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.61
KOG4234	271	consensus TPR repeat-containing protein [General f	97.59
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.58
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.58
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.58
PF13512	142	TPR_18: Tetratricopeptide repeat	97.54
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.5
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.48
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.48
PLN03218	1060	maturation of RBCL 1; Provisional	97.47
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.45
PF13431	34	TPR_17: Tetratricopeptide repeat	97.45
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.45
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.44
PLN03218	1060	maturation of RBCL 1; Provisional	97.37
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.37
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.35
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.34
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.34
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.34
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.33
PLN03077	857	Protein ECB2; Provisional	97.32
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.3
PLN03077	857	Protein ECB2; Provisional	97.24
PRK11906	458	transcriptional regulator; Provisional	97.21
PRK11906	458	transcriptional regulator; Provisional	97.16
KOG2003	840	consensus TPR repeat-containing protein [General f	97.16
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.15
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.13
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.12
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.11
KOG4555	175	consensus TPR repeat-containing protein [Function	97.11
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.11
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.1
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.04
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.03
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.01
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.0
PRK04841	903	transcriptional regulator MalT; Provisional	96.97
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.95
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.92
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.9
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.89
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.89
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.78
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.78
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.74
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.7
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.7
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.67
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.64
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.63
PF13428	44	TPR_14: Tetratricopeptide repeat	96.62
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.61
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.57
PF13428	44	TPR_14: Tetratricopeptide repeat	96.54
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.5
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.48
PRK04841	903	transcriptional regulator MalT; Provisional	96.38
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.36
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.3
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.12
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.09
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.06
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.0
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.0
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.99
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.97
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.87
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.86
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.77
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.75
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.71
KOG1128	777	consensus Uncharacterized conserved protein, conta	95.63
KOG0495	913	consensus HAT repeat protein [RNA processing and m	95.35
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.14
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.07
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.99
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.95
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.9
KOG2471	696	consensus TPR repeat-containing protein [General f	94.86
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.69
PRK10941	269	hypothetical protein; Provisional	94.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.36
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	94.33
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.29
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.91
PF13431	34	TPR_17: Tetratricopeptide repeat	93.68
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.45
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.32
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	93.27
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.0
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.95
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	92.63
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.61
KOG4555	175	consensus TPR repeat-containing protein [Function	92.56
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.53
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	92.52
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.47
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.41
KOG1585	308	consensus Protein required for fusion of vesicles	92.36
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.27
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	92.27
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.02
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.81
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	91.79
KOG4234	271	consensus TPR repeat-containing protein [General f	91.6
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.42
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.39
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	91.38
KOG3364	149	consensus Membrane protein involved in organellar	91.34
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.18
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.14
COG2912	269	Uncharacterized conserved protein [Function unknow	90.98
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.93
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.87
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.68
KOG1586	288	consensus Protein required for fusion of vesicles	90.45
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.41
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.33
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.27
KOG4507	886	consensus Uncharacterized conserved protein, conta	89.8
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.37
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	89.36
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	89.13
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.87
KOG3616	1636	consensus Selective LIM binding factor [Transcript	88.76
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.28
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.24
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	87.87
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	87.86
KOG1585	308	consensus Protein required for fusion of vesicles	87.64
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.9
KOG1941	518	consensus Acetylcholine receptor-associated protei	86.17
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	85.99
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.68
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	85.49
COG3947	361	Response regulator containing CheY-like receiver a	84.99
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	84.86
COG3898	531	Uncharacterized membrane-bound protein [Function u	84.68
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	84.41
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	84.28
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	84.28
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	83.65
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	83.59
COG3629	280	DnrI DNA-binding transcriptional activator of the	83.47
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	83.04
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	83.0
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.78
KOG1941	518	consensus Acetylcholine receptor-associated protei	82.62
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	81.56
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	81.25
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	80.99
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	80.91
KOG3364	149	consensus Membrane protein involved in organellar	80.83
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	80.52
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	80.06

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.1e-23  Score=171.47  Aligned_cols=129  Identities=44%  Similarity=0.669  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHc
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l   85 (136)
                      +++.|+++++++++++|.+|+|||||+..++.+|.|+|++||||+..|+|+||.+++...++...+..|+|+++.|+.++
T Consensus        16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l   95 (611)
T KOG1173|consen   16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL   95 (611)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            57788888999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             cChhhhhhhhh-------------------hhhc------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 RSGTSVCRCSV-------------------MLRL------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 ~~~~ea~~~~~-------------------~~~~------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++|++|.+-.+                   ++.+      ++..+|+||+++|++|..++|+++|..+|++||.
T Consensus        96 k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~  169 (611)
T KOG1173|consen   96 KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL  169 (611)
T ss_pred             HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence            99999964221                   0111      3567999999999999999999999999999985

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.61  E-value=1e-15  Score=97.76  Aligned_cols=78  Identities=24%  Similarity=0.392  Sum_probs=66.4

Q ss_pred             HcCChhhHHHHHHHHhccCC-ChHH--HHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655           18 SKHLYSSAIFFANEVAALTN-DPAD--VYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRC   94 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~-~~~~--~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~   94 (136)
                      ++++|++|+++++++++..| ++++  ++.+|.|++..|+|++|+.++++.+..+.++.+.+++|+|++++|+|+||++.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            47899999999999999999 5454  55569999999999999999988555667889999999999999999999864


Q ss_pred             h
Q 032655           95 S   95 (136)
Q Consensus        95 ~   95 (136)
                      .
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            3

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=6.5e-12  Score=104.49  Aligned_cols=120  Identities=16%  Similarity=0.134  Sum_probs=105.9

Q ss_pred             HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655           16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      ++.+++++.|.|...|++.++| +.--+.+.|..+.+.|+.++|+.+++++ .++++++.|+|-.|..++.+++|+||+.
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~  578 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ  578 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence            5678999999999999999999 7777889999999999999999999665 4588999999999999999999999987


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+.-..-.|.++.+++++|++|..+|+.+.|+..|.=|+.+
T Consensus       579 ~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  579 ELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            766443345789999999999999999999999999887754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.28  E-value=2.4e-11  Score=85.09  Aligned_cols=106  Identities=13%  Similarity=0.083  Sum_probs=83.3

Q ss_pred             HHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHh
Q 032655           28 FANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISS  106 (136)
Q Consensus        28 ~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a  106 (136)
                      +.++++++.|+  +++.+|.+++..|+|++|+..++.. .+.+.+...++.+|.++..+|++++|++.....+...|..+
T Consensus        15 ~~~~al~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~   92 (144)
T PRK15359         15 ILKQLLSVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP   92 (144)
T ss_pred             HHHHHHHcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            44666666654  4777889999999999998887654 34667888889999999999999998886665444456677


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          107 AICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       107 ~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..++.+|.++..+|++++|+.+|.+|+++
T Consensus        93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         93 EPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            78888899999999999999999988864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.26  E-value=1.3e-10  Score=97.94  Aligned_cols=124  Identities=9%  Similarity=-0.152  Sum_probs=85.8

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      +-.-+..+++++.|+...++++.++| .+..++.+|.++...|++++|+..+++. ...+.++.+++..|.+++.+|+++
T Consensus       337 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  416 (615)
T TIGR00990       337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA  416 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            33444567778888888888877777 5667777788887788888777776553 335566777777788888888877


Q ss_pred             hhhhhhh----------------------------------hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           90 SVCRCSV----------------------------------MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        90 ea~~~~~----------------------------------~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|+....                                  ..+...|..+.++..+|.++..+|++++|+..|.+|+++
T Consensus       417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            7753211                                  111123445666777888888888888888888888764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.25  E-value=3.1e-10  Score=81.64  Aligned_cols=89  Identities=6%  Similarity=-0.166  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~   82 (136)
                      .....-.+.+.+...++++.|+.+.++++...| ++.....+|.++...|++.+|...+++. ...+.+....+.+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            334455566777778888888888888888887 5667777888888888888888877554 23455667777888888


Q ss_pred             HHccChhhhhh
Q 032655           83 EELRSGTSVCR   93 (136)
Q Consensus        83 ~~l~~~~ea~~   93 (136)
                      ...|++++|.+
T Consensus       110 ~~~g~~~~A~~  120 (234)
T TIGR02521       110 CQQGKYEQAMQ  120 (234)
T ss_pred             HHcccHHHHHH
Confidence            88888888754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.24  E-value=5.2e-10  Score=78.07  Aligned_cols=121  Identities=14%  Similarity=-0.020  Sum_probs=97.2

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcCccccc----CcchHHHHHHHHH
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSSKIVLR----DLRFRYLAAKCLE   83 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~----~~~~~~l~a~c~~   83 (136)
                      -+...+..+++..+.-.++++..-.| +   +...+.+|.+++..|+|++|...++...-...    .+.+++-+|++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~   96 (145)
T PF09976_consen   17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL   96 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence            33444568999999999999999998 3   34688899999999999999998877542111    2357888999999


Q ss_pred             HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      ..|+|++|+..... ..+.+..+.+..++|.+|.++|++++|+..|++||
T Consensus        97 ~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   97 QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999999887643 22344566677799999999999999999999986

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.23  E-value=7.7e-11  Score=80.37  Aligned_cols=106  Identities=17%  Similarity=0.156  Sum_probs=84.5

Q ss_pred             HHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhH
Q 032655           30 NEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSA  107 (136)
Q Consensus        30 ekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~  107 (136)
                      ++++...| +++..+.+|.+++..|++.+|...++.. ...+.++..++.+|.|+..+|++++|...........|....
T Consensus         7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~   86 (135)
T TIGR02552         7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR   86 (135)
T ss_pred             HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence            56778888 6677888999999999999998888664 335678888999999999999999988755443333455667


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          108 ICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       108 i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .++.+|.+|..+|++++|+.+|+++++.
T Consensus        87 ~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        87 PYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7788999999999999999999988864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.23  E-value=1.9e-10  Score=98.37  Aligned_cols=127  Identities=10%  Similarity=-0.084  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~   86 (136)
                      ++-+-+--...|.+++|.+|-++++++.| +......+|+++.+.+++++|+..+++.- ..+.++...+++|.|+.++|
T Consensus        89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g  168 (694)
T PRK15179         89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG  168 (694)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Confidence            44444455567999999999999999999 67789999999999999999999887653 36789999999999999999


Q ss_pred             ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|+||++.......+.|..+.++..+|.+++.+|+.++|+.+|++|++.
T Consensus       169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999998777655566777888999999999999999999999999864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.21  E-value=3.8e-10  Score=95.09  Aligned_cols=119  Identities=14%  Similarity=-0.009  Sum_probs=94.4

Q ss_pred             HHcCChhhHHHHHHHHhccC---C-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhh
Q 032655           17 VSKHLYSSAIFFANEVAALT---N-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~---~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      -..+.|+.|+-+.++++...   | ....++.+|.+++..|++++|+..+++. .+.+.+...++..|.++..+|++++|
T Consensus       305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA  384 (615)
T TIGR00990       305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA  384 (615)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            44589999999999999875   4 3446888999999999999999988665 34667778889999999999999999


Q ss_pred             hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++.....+...|....+++.+|.++..+|++++|+.+|+++|++
T Consensus       385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l  428 (615)
T TIGR00990       385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL  428 (615)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            87655433333445667777788888888888888888877754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.17  E-value=4.5e-10  Score=82.69  Aligned_cols=117  Identities=7%  Similarity=-0.040  Sum_probs=100.9

Q ss_pred             cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH-HHccC--hhhhhh
Q 032655           19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL-EELRS--GTSVCR   93 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~-~~l~~--~~ea~~   93 (136)
                      .+..++++-..++.+..+| +++.|+.+|.++...|+++.|+..+++. .+.+.++..++.+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            5667899999999999999 8899999999999999999999999665 45778999999999996 67788  488877


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .....+...|....+++++|.++..+|++++|+.+|+++|+.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            666554445567778899999999999999999999999875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.16  E-value=1.2e-09  Score=78.49  Aligned_cols=125  Identities=10%  Similarity=-0.034  Sum_probs=99.2

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc---cccCcchHHHHHHHHHHcc
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI---VLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l---~~~~~~~~~l~a~c~~~l~   86 (136)
                      .+..-+...++++.|+.+.++++...| ++..++.+|.+++..|++++|...+++..-   .+......+..|.|+...|
T Consensus        70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  149 (234)
T TIGR02521        70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG  149 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence            345566778999999999999999998 677889999999999999999998876532   1234557788999999999


Q ss_pred             ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++++|.+.....+...|.....++.+|.++..+|++++|..++.++++.
T Consensus       150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999987655433323334456778899999999999999999988753

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.11  E-value=1.8e-09  Score=91.21  Aligned_cols=127  Identities=16%  Similarity=0.058  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l   85 (136)
                      .+......++.+|+|++|+...++++...| +++.++.+|.++...|+|.+|+..+++.. ..+.+.......|+++...
T Consensus        24 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (899)
T TIGR02917        24 SLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ  103 (899)
T ss_pred             HHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHC
Confidence            455566778889999999999999999999 88899999999999999999999886643 2445667889999999999


Q ss_pred             cChhhhhhhhhhhh-cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 RSGTSVCRCSVMLR-LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 ~~~~ea~~~~~~~~-~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |++++|++...... ...+..+.+++.+|.++..+|++++|..+|+++++
T Consensus       104 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  153 (899)
T TIGR02917       104 GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA  153 (899)
T ss_pred             CCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999976543211 12234555666778888888888888888877765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK12370 invasion protein regulator; Provisional

Probab=99.09  E-value=1.5e-09  Score=90.69  Aligned_cols=118  Identities=11%  Similarity=-0.001  Sum_probs=74.1

Q ss_pred             HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhh
Q 032655           17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRC   94 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~   94 (136)
                      ...++++.|+.+.++++.++| +++.++.+|.++...|++++|+..+++. .+++.++...+..+..++..|++++|+..
T Consensus       349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        349 TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence            345666666666666666666 4555666666666666666666666443 33444444545555556666666666554


Q ss_pred             hhhhhcc-cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           95 SVMLRLL-KMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        95 ~~~~~~~-~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ....+.. .|.....+.++|.+|..+|++++|...+.+.+.
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~  469 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST  469 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence            3332222 233445567889999999999999999887653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.08  E-value=2.1e-09  Score=75.28  Aligned_cols=109  Identities=9%  Similarity=0.002  Sum_probs=91.2

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      .+.......|++++|+-.+++++..+| +++.++.+|.++...|+|.+|+..+++. .+.+.++..++..|.|+..+|++
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence            445667788999999999999999999 8889999999999999999999988664 45789999999999999999999


Q ss_pred             hhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655           89 TSVCRCSVMLRLLKMISSAICFLRGKAYEAL  119 (136)
Q Consensus        89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~  119 (136)
                      ++|+......+...|..+..+.++|.+...+
T Consensus       109 ~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        109 GLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999876654444445555666777776554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.08  E-value=1.5e-09  Score=95.99  Aligned_cols=117  Identities=6%  Similarity=-0.125  Sum_probs=101.4

Q ss_pred             cCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655           19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~   97 (136)
                      .|+++.|+.+.++++...|+++.++.+|.++...|++.+|+..+++. .+.+.++..++.+|.++.+.|++++|++....
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~  668 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER  668 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            38999999999999999998788888999999999999999988654 44778888999999999999999999887665


Q ss_pred             hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+...|....+++.+|.++..+|++++|..+|++|+++
T Consensus       669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            55555667788999999999999999999999999875

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.04  E-value=4.7e-09  Score=77.97  Aligned_cols=131  Identities=12%  Similarity=0.036  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch---HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcc---hHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP---ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLR---FRY   76 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~---~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~---~~~   76 (136)
                      ..+.+-.....++..++|+.|+...++++...| ++   +.++.+|.+++..|++.+|+..+++. ...+.++.   ..+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            345667778888999999999999999999998 54   46799999999999999999988765 33455555   689


Q ss_pred             HHHHHHHHc--------cChhhhhhhhhhhhcccch-----------------HhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655           77 LAAKCLEEL--------RSGTSVCRCSVMLRLLKMI-----------------SSAICFLRGKAYEALGNCAQARLWLVS  131 (136)
Q Consensus        77 l~a~c~~~l--------~~~~ea~~~~~~~~~~~~~-----------------~a~i~~l~G~~~~~~~~~~~A~~~y~~  131 (136)
                      ..|.|+++.        |++++|.+.....+...|.                 .....+.+|.+|..+|++.+|+..|++
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~  191 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET  191 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            999999987        7888887643322111110                 111124678999999999999999999


Q ss_pred             hhcc
Q 032655          132 CDEF  135 (136)
Q Consensus       132 AL~~  135 (136)
                      +++.
T Consensus       192 al~~  195 (235)
T TIGR03302       192 VVEN  195 (235)
T ss_pred             HHHH
Confidence            8753

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.04  E-value=4.7e-09  Score=89.49  Aligned_cols=120  Identities=16%  Similarity=0.018  Sum_probs=78.2

Q ss_pred             HHHcCChhh----HHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655           16 CVSKHLYSS----AIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        16 ~l~~~~~~~----Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      +...|++++    |+.+.++++.+.| ++..+..+|..+...|++.+|+..+++. .+.+.++..++.+|.++.++|+++
T Consensus       256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~  335 (656)
T PRK15174        256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT  335 (656)
T ss_pred             HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            345566664    6666777777666 5556666677777777777776666543 234556666666777777777777


Q ss_pred             hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|++.........|..+.....+|.++..+|+.++|+..|+++++.
T Consensus       336 eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        336 AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            7766544333223334444556788888889999999998888764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.04  E-value=3.9e-09  Score=81.90  Aligned_cols=120  Identities=12%  Similarity=-0.115  Sum_probs=89.6

Q ss_pred             HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655           16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      +...|+++.|+...++++.+.| +++.++.+|..+...|+|+.|+..+++. .+.+.+...++..|.+++..|++++|++
T Consensus        74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~  153 (296)
T PRK11189         74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD  153 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3456888888888888888888 6778888888888888888888877554 4456777788888888888888888742


Q ss_pred             hh---------------------------------hh-----------------h---------h-------cc----cc
Q 032655           94 CS---------------------------------VM-----------------L---------R-------LL----KM  103 (136)
Q Consensus        94 ~~---------------------------------~~-----------------~---------~-------~~----~~  103 (136)
                      ..                                 ..                 .         +       +.    .|
T Consensus       154 ~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~  233 (296)
T PRK11189        154 DLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAE  233 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH
Confidence            00                                 00                 0         0       00    01


Q ss_pred             hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          104 ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       104 ~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+.+++.+|.+++.+|++++|+.+|++|++.
T Consensus       234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        234 RLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            23357889999999999999999999999864

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.03  E-value=2.1e-09  Score=89.97  Aligned_cols=118  Identities=14%  Similarity=-0.036  Sum_probs=88.0

Q ss_pred             HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhh
Q 032655           18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCS   95 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~   95 (136)
                      ++|+.+-|+-.-+|+++++| -|+....+|.++...|+..+|..+..+. .+.+.|++..+.+|..+.+.|++++|..-.
T Consensus       298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly  377 (966)
T KOG4626|consen  298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY  377 (966)
T ss_pred             ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence            45677777777777777777 3555666777777777777777766544 345677777777777777777777776544


Q ss_pred             hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           96 VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        96 ~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+.+.-.|.-++.+.++|.+|+.+||.++|+.||++||++
T Consensus       378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI  417 (966)
T ss_pred             HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence            4444445778888889999999999999999999999976

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.01  E-value=7.7e-09  Score=87.46  Aligned_cols=125  Identities=15%  Similarity=0.075  Sum_probs=93.1

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccCh
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      .+..-+...+++++|+-+.++++...| +++..+.++.++...|++.+|+.++++.. ..+.++..++.+|.++...|++
T Consensus       538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  617 (899)
T TIGR02917       538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL  617 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence            344455667888888888888888887 66677788888888888888888876642 2456677888888888888888


Q ss_pred             hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++|.+.........|.....++.+|.+|..+|++++|..+|+++++.
T Consensus       618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  664 (899)
T TIGR02917       618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL  664 (899)
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            88877554333323444556778888888888888888888888754

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.99  E-value=1.8e-09  Score=82.52  Aligned_cols=126  Identities=13%  Similarity=-0.078  Sum_probs=80.7

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccC
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~   87 (136)
                      .....-+...|+++.|+-..++++..+| +++-...+++.+...|++.++..+++...- .+.++..+..+|.++..+|+
T Consensus       150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~  229 (280)
T PF13429_consen  150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR  229 (280)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc
Confidence            3444556678899999999999999999 566777888899999999887777765433 35777888888999999999


Q ss_pred             hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +++|+..........|....+....|.++...|+.++|...++++++.
T Consensus       230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999988766555455666777778899999999999999999988864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.97  E-value=7.9e-09  Score=88.12  Aligned_cols=126  Identities=10%  Similarity=-0.015  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l   85 (136)
                      -++..+...+..|++++|+-.++.+++..| +++.++.+|.+....|++..|+..+++. .+.+.++..+...|.++.+.
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS  123 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            466777788888888888888888888888 6777888888888888888888877664 34667788888888888888


Q ss_pred             cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      |++++|++.....+...|.....+..+|.++..+|++++|+..|++++
T Consensus       124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~  171 (656)
T PRK15174        124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA  171 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            888888765543332233444555666777777777777777666554

>PRK12370 invasion protein regulator; Provisional

Probab=98.97  E-value=5e-09  Score=87.60  Aligned_cols=115  Identities=10%  Similarity=-0.109  Sum_probs=94.3

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~   97 (136)
                      ++++.|+-.++++++++| +++.+..+|.++...|++.+|+..+++. .+.+.++..++.+|.++...|++++|+.....
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            458999999999999999 7888999999999999999999999765 45778888999999999999999999886654


Q ss_pred             hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .+.-.|......+.+|.++..+|++++|+.+++++++
T Consensus       398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~  434 (553)
T PRK12370        398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS  434 (553)
T ss_pred             HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            4332233333345566667778999999999999875

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.96  E-value=1.4e-08  Score=86.99  Aligned_cols=132  Identities=11%  Similarity=-0.002  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK   80 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~   80 (136)
                      .++.+|+|+.+..+-.-+....|+-=+--+.--.| +++..+++|......|.+++|..+++.. .+.+.+...+..+|.
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~  128 (694)
T PRK15179         49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLR  128 (694)
T ss_pred             HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            46788999999988888888887766555555567 6889999999999999999999988664 557899999999999


Q ss_pred             HHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           81 CLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        81 c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++.++++++||+......++..|..+...+++|.++.++|.+++|.+.|.+++.
T Consensus       129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            999999999999988877777788899999999999999999999999999984

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.93  E-value=6e-09  Score=74.09  Aligned_cols=92  Identities=8%  Similarity=0.080  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK   80 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~   80 (136)
                      ++.++.+-++--.....|++++|.-+++.++..+| +++-|+-||-|+-..|+|..|+.....+ .+.+.+|...+..|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            34444555555555555555555555555555555 4445555555555555555555544332 234455555555555


Q ss_pred             HHHHccChhhhhhh
Q 032655           81 CLEELRSGTSVCRC   94 (136)
Q Consensus        81 c~~~l~~~~ea~~~   94 (136)
                      |++.+|+.++|.+.
T Consensus       112 c~L~lG~~~~A~~a  125 (157)
T PRK15363        112 CYLACDNVCYAIKA  125 (157)
T ss_pred             HHHHcCCHHHHHHH
Confidence            55555555555443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.92  E-value=2e-08  Score=90.27  Aligned_cols=122  Identities=11%  Similarity=-0.038  Sum_probs=99.7

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcc--------------hHHH
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLR--------------FRYL   77 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~--------------~~~l   77 (136)
                      ..++..+++++|+-..++++..+| +++.++.+|.+++..|++++|+..+++.. ..+.+..              ....
T Consensus       277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~  356 (1157)
T PRK11447        277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ  356 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence            456788999999999999999999 88889999999999999999999887643 2333322              1234


Q ss_pred             HHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           78 AAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        78 ~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .|.++.+.|++++|+......+...|..+.+++.+|.+|..+|++++|+.+|+++|++
T Consensus       357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~  414 (1157)
T PRK11447        357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM  414 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5889999999999998766554444555667788999999999999999999999964

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.4e-08  Score=82.49  Aligned_cols=121  Identities=17%  Similarity=0.136  Sum_probs=101.5

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhh
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      +.+++.-+...|+---.+++.++| +-..||-+||.|-..+-+.-|+.+++++ .+.|.++..+-.+|.|+.++++.+||
T Consensus       372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA  451 (559)
T KOG1155|consen  372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA  451 (559)
T ss_pred             HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence            456677777888888888888888 7888999999999999999999999775 44678899999999999999999999


Q ss_pred             hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +...-..+...+....++.-+|++|++++..++|+.+|++.++
T Consensus       452 iKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  452 IKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9865433322335677888999999999999999999999876

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.91  E-value=2.7e-09  Score=67.75  Aligned_cols=80  Identities=14%  Similarity=0.088  Sum_probs=59.0

Q ss_pred             cCChHHHHHHHhcCcc-ccc--CcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHH
Q 032655           52 GRHYRRPFHLLNSSKI-VLR--DLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLW  128 (136)
Q Consensus        52 ~g~~~~A~~~l~~~~l-~~~--~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~  128 (136)
                      +|+|++|+.++++.-- .+.  +....+.+|.|++++|+|++|++.... ....+....+.+++|+|+.++|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6899999998876432 232  445667779999999999999876654 211123456667889999999999999999


Q ss_pred             HHHh
Q 032655          129 LVSC  132 (136)
Q Consensus       129 y~~A  132 (136)
                      |++|
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9876

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.90  E-value=5.5e-08  Score=69.20  Aligned_cols=104  Identities=11%  Similarity=0.056  Sum_probs=86.2

Q ss_pred             HhccC-C-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHH
Q 032655           32 VAALT-N-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAI  108 (136)
Q Consensus        32 l~~~~-~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i  108 (136)
                      +..++ | ..+.+|-+|.-++..|+++.|..+.+-.- +++.+...++.+|-|+-.+|+|++|++.......-.|.....
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34455 5 56789999999999999999999886643 367889999999999999999999999776543322445566


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          109 CFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+..|.|+.++|+.+.|..+|+.|+..
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999864

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.89  E-value=2.4e-08  Score=77.42  Aligned_cols=116  Identities=9%  Similarity=-0.137  Sum_probs=94.6

Q ss_pred             CChhhHHHHHHHHhccCC-C----hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-D----PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~----~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      ++.+.++--..+++...| +    +..++.+|.++...|++..|+..+++. .+.+.++..++.+|..+..+|++++|++
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            455666666677776444 3    345899999999999999999977554 4577889999999999999999999998


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .....+...|....+++.+|.++..+|++++|++.|+++++.
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            766554444556778899999999999999999999999864

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.89  E-value=7e-08  Score=76.16  Aligned_cols=50  Identities=6%  Similarity=0.044  Sum_probs=23.4

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHH
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLL   62 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l   62 (136)
                      ...+...++++.|+.+.++++...| +......++.++...|++.+|+..+
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  164 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVA  164 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHH
Confidence            3444444555555555555544444 3333444444444455555444444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.88  E-value=5.5e-08  Score=76.77  Aligned_cols=119  Identities=8%  Similarity=-0.061  Sum_probs=68.8

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccC-cchHHHHHHHHHHccChhhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRD-LRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~-~~~~~l~a~c~~~l~~~~ea   91 (136)
                      .+..++++++|+-++++++...| +++..+.+|.++...|++.+|+..+++..- .+.+ ......++.++.+.|++++|
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  268 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG  268 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence            33455666666666666666665 444556666666666666666665554321 1111 23345556666666666666


Q ss_pred             hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ...........| .......+|.++.+.|++++|...|+++++
T Consensus       269 ~~~l~~~~~~~p-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~  310 (389)
T PRK11788        269 LEFLRRALEEYP-GADLLLALAQLLEEQEGPEAAQALLREQLR  310 (389)
T ss_pred             HHHHHHHHHhCC-CchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            553332221122 223346778888888888888888888775

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.87  E-value=2.3e-08  Score=79.68  Aligned_cols=113  Identities=11%  Similarity=-0.031  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l   85 (136)
                      .|...-......++|+.|+...++++.+.| ++..++.+|.|+...|+|.+|+..+++. .+.+.++.+++.+|.+++.+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            355667778889999999999999999999 7888999999999999999999988665 45678889999999999999


Q ss_pred             cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655           86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG  120 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~  120 (136)
                      |+|++|+......+...|....+...+++|..++.
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999988665433333445556667777776663

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.86  E-value=4.7e-08  Score=66.50  Aligned_cols=90  Identities=18%  Similarity=0.152  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~   84 (136)
                      ..+..+...++..+++++|+.+.++++...| +++.++.+|.|++..|+|.+|...+++. ...+.++..++.+|.|+..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            4466777888899999999999999999999 8889999999999999999999988664 4567888999999999999


Q ss_pred             ccChhhhhhhhh
Q 032655           85 LRSGTSVCRCSV   96 (136)
Q Consensus        85 l~~~~ea~~~~~   96 (136)
                      .|++++|+....
T Consensus        98 ~g~~~~A~~~~~  109 (135)
T TIGR02552        98 LGEPESALKALD  109 (135)
T ss_pred             cCCHHHHHHHHH
Confidence            999999987554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.82  E-value=1.6e-07  Score=70.57  Aligned_cols=133  Identities=10%  Similarity=-0.135  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK   80 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~   80 (136)
                      .++.+.--.+--.++.+|++..|.---||++..+| ++..+..+|..|-..|+.+-|-+..+++ ++.+++-+..+.+|-
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            34444455667789999999999999999999999 6778999999999999999999988654 567889999999999


Q ss_pred             HHHHccChhhhhhhhhhhhc-c-cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           81 CLEELRSGTSVCRCSVMLRL-L-KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        81 c~~~l~~~~ea~~~~~~~~~-~-~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      =+...|+|+||.......+. + .+..+..+-++|.|..++|.+..|.+.|+++|++
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            99999999999876554332 2 3456677789999999999999999999999975

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.82  E-value=1.2e-07  Score=70.35  Aligned_cols=121  Identities=12%  Similarity=-0.015  Sum_probs=94.3

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChH---HHHHHHHHHhcc--------CChHHHHHHHhcCcc-cccCcch-----
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPA---DVYMQAQALFLG--------RHYRRPFHLLNSSKI-VLRDLRF-----   74 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~---~~~~la~~l~~~--------g~~~~A~~~l~~~~l-~~~~~~~-----   74 (136)
                      -.-+...++++.|+-..++++..+| ++.   .++.+|.|++..        |++..|+..+++.-. .+.+...     
T Consensus        77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302        77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            3456678999999999999999999 444   589999999987        889999998876432 2333222     


Q ss_pred             ------------HHHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           75 ------------RYLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        75 ------------~~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                                  .+..|..+++.|++++|++.....++   ..|..+.+++.+|.+|..+|++++|+.+++...
T Consensus       157 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       157 RMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                        13568899999999999986654433   235567889999999999999999999887653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.81  E-value=5.8e-08  Score=86.09  Aligned_cols=125  Identities=11%  Similarity=-0.071  Sum_probs=111.0

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      +..-+...|++++|+-+.++++.+.| +++....+|.++...|++.+|+..+++. .+.+.++...+.+|.++..+|+++
T Consensus       615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            34456778999999999999999999 7888999999999999999999988765 446789999999999999999999


Q ss_pred             hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhccC
Q 032655           90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT  136 (136)
Q Consensus        90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~~  136 (136)
                      +|+......+...|..+.+.+..|.+.++.++++.|.+.|.++.+++
T Consensus       695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~  741 (987)
T PRK09782        695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS  741 (987)
T ss_pred             HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99987776655557788899999999999999999999999998764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.80  E-value=5.5e-08  Score=81.71  Aligned_cols=117  Identities=9%  Similarity=-0.045  Sum_probs=78.9

Q ss_pred             cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh---
Q 032655           19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR---   93 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~---   93 (136)
                      .|+.++|+-.-.+++.++| .+++++.+|..+.-.|.++.|..+.++. ...+........+|-.+-+.|++++|+.   
T Consensus       333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk  412 (966)
T KOG4626|consen  333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK  412 (966)
T ss_pred             ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence            4666666666666666666 4556666666666666666666655433 2233334445666666666666666642   


Q ss_pred             -------------------------------hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           94 -------------------------------CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        94 -------------------------------~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                                                     .....+.-+|.-+..+-++|.+|+..||..+|+..|++||++
T Consensus       413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl  485 (966)
T KOG4626|consen  413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL  485 (966)
T ss_pred             HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence                                           222223345788888999999999999999999999999986

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.80  E-value=3e-08  Score=78.97  Aligned_cols=95  Identities=14%  Similarity=0.062  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL  119 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~  119 (136)
                      .+...|..++..|+|.+|+.++++. .+.+.++..++.+|.|+.++|++++|+......+...|....+++.+|.+|..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            4667899999999999999988665 446788899999999999999999999866554443455666788999999999


Q ss_pred             CChHHHHHHHHHhhcc
Q 032655          120 GNCAQARLWLVSCDEF  135 (136)
Q Consensus       120 ~~~~~A~~~y~~AL~~  135 (136)
                      |++++|+.+|++|+++
T Consensus        84 g~~~eA~~~~~~al~l   99 (356)
T PLN03088         84 EEYQTAKAALEKGASL   99 (356)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.79  E-value=5e-08  Score=64.28  Aligned_cols=96  Identities=9%  Similarity=0.061  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCcc-cccC---cchHHHHHHHHHHccChhhhhhhhhhhh--c-ccchHhHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRD---LRFRYLAAKCLEELRSGTSVCRCSVMLR--L-LKMISSAICFL  111 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~---~~~~~l~a~c~~~l~~~~ea~~~~~~~~--~-~~~~~a~i~~l  111 (136)
                      ++.+|.+|..++..|+|.+|+..++...- .+.+   +.+.+.+|.++++.|++++|.+......  . +.+....+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            45677788888888888888777755421 1222   3567778888888888888876544322  1 22233456677


Q ss_pred             HHHHHHHcCChHHHHHHHHHhhc
Q 032655          112 RGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       112 ~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +|.++.++|+.++|..+|.++++
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHH
Confidence            78888888888888888887765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.76  E-value=6.1e-08  Score=74.96  Aligned_cols=96  Identities=14%  Similarity=0.058  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~  118 (136)
                      +.+=.-|.-++.+++|.+|+... +...+++.++-.+...|.+|.+||+|+.|+..-...+...|..+-.|.-+|.+|-.
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            34566788899999999999977 55577889999999999999999999999875544443345667777888999999


Q ss_pred             cCChHHHHHHHHHhhcc
Q 032655          119 LGNCAQARLWLVSCDEF  135 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL~~  135 (136)
                      +|++++|+++|++||++
T Consensus       162 ~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  162 LGKYEEAIEAYKKALEL  178 (304)
T ss_pred             cCcHHHHHHHHHhhhcc
Confidence            99999999999999986

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.75  E-value=2.4e-08  Score=60.73  Aligned_cols=64  Identities=13%  Similarity=-0.018  Sum_probs=53.3

Q ss_pred             cchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC-ChHHHHHHHHHhhcc
Q 032655           72 LRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG-NCAQARLWLVSCDEF  135 (136)
Q Consensus        72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~-~~~~A~~~y~~AL~~  135 (136)
                      +..++..|.+++..|+|++|+......++-.|..+.+++.+|.+|..+| ++++|+++|++||++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            4577889999999999999988666544444667889999999999999 799999999999875

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=5.9e-08  Score=80.29  Aligned_cols=121  Identities=12%  Similarity=0.015  Sum_probs=103.5

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc--ccc------CcchHHHHHHHHHHc
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLR------DLRFRYLAAKCLEEL   85 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~------~~~~~~l~a~c~~~l   85 (136)
                      +|...++++=|-++.-.++++.| +|--...+|.+.|..+.|.+|..++++...  ...      -.....++|..+.++
T Consensus       389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl  468 (611)
T KOG1173|consen  389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL  468 (611)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence            56677999999999999999999 777889999999999999999998877542  111      223479999999999


Q ss_pred             cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++|++|++.....+.-.|..+.++--+|.||..+||.+.|+++|-+||-+
T Consensus       469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            99999999887766666677888889999999999999999999999964

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.74  E-value=2.3e-07  Score=83.46  Aligned_cols=123  Identities=11%  Similarity=-0.104  Sum_probs=95.1

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      +-..+...++++.|+-..++++...| +++..+.+|.++...|++.+|+..++... ..+.++.....+|.++.++|+++
T Consensus       609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~  688 (1157)
T PRK11447        609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA  688 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence            44556778999999999999999998 78888889999999999999998887543 23456677778899999999999


Q ss_pred             hhhhhhhhhhc--c-cc---hHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           90 SVCRCSVMLRL--L-KM---ISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        90 ea~~~~~~~~~--~-~~---~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +|.+.....+.  + .+   ..+.++...|.+++..|+.++|+..|++||.
T Consensus       689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            98875443221  1 11   1334455679999999999999999999984

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.72  E-value=8.2e-08  Score=58.60  Aligned_cols=94  Identities=13%  Similarity=0.034  Sum_probs=53.9

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG  120 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~  120 (136)
                      ++.+|.+++..|++.+|+..++.. ...+.++...+..|.|+...|++++|.+.........|....+++.+|.++..+|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455566666666666666655442 2223344556666666666666666655433222222222345567777777777


Q ss_pred             ChHHHHHHHHHhhcc
Q 032655          121 NCAQARLWLVSCDEF  135 (136)
Q Consensus       121 ~~~~A~~~y~~AL~~  135 (136)
                      +.++|...+.++++.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            777777777776653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.70  E-value=4.1e-08  Score=75.02  Aligned_cols=125  Identities=18%  Similarity=0.100  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc---cccCcchHHHHHHHHHHc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI---VLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l---~~~~~~~~~l~a~c~~~l   85 (136)
                      +..++.. +..++|+.|+-.+++.+..+++|..+...++++...|+++++..++++..-   .+.++.++...|.++.+.
T Consensus        81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~  159 (280)
T PF13429_consen   81 YERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL  159 (280)
T ss_dssp             --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred             ccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            3344444 567788888888887777666777777777777888888877777755221   235666777788888888


Q ss_pred             cChhhhhhhh----------------------------------hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655           86 RSGTSVCRCS----------------------------------VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVS  131 (136)
Q Consensus        86 ~~~~ea~~~~----------------------------------~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~  131 (136)
                      |++++|+...                                  .......|..+.++..+|.+|..+|++++|..+|.+
T Consensus       160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence            8887775311                                  000011234556677889999999999999999999


Q ss_pred             hhc
Q 032655          132 CDE  134 (136)
Q Consensus       132 AL~  134 (136)
                      +++
T Consensus       240 ~~~  242 (280)
T PF13429_consen  240 ALK  242 (280)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            886

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.69  E-value=3.6e-07  Score=73.59  Aligned_cols=122  Identities=7%  Similarity=-0.154  Sum_probs=100.0

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChh
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      ...+..+..|+.+.|.-.-++.+...|+++-+..++.+  ..|++++++..+++.. -.+.++..+..+|+.+...|+|.
T Consensus       268 ~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~  345 (398)
T PRK10747        268 AMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ  345 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence            45677788999999999999999966688777777766  4499999999886542 25678888999999999999999


Q ss_pred             hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|.+.........| ....+..+|.+++++|+.++|.++|+++|.+
T Consensus       346 ~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        346 EASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99887765544334 4556778999999999999999999999875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.68  E-value=3.9e-07  Score=78.99  Aligned_cols=126  Identities=7%  Similarity=-0.066  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l   85 (136)
                      ++-.|++-..-.|+++.|+-..+++....| +......+|.++...|++.+|+.++++. .+.+.++.....+|.++.+.
T Consensus        17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~   96 (765)
T PRK10049         17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA   96 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            344555555556666666666666555444 3334555666666666666666655442 22344555556666666666


Q ss_pred             cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |++++|++.....+...|.... ++.+|.++..+|+.++|+..|+++++
T Consensus        97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~  144 (765)
T PRK10049         97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP  144 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6666665544433322232333 55556666666666666666666554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.66  E-value=4.5e-07  Score=78.60  Aligned_cols=125  Identities=6%  Similarity=-0.144  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +..+...+...+++++|+-..+++++..| +++....+|.++...|++.+|+..+++. ...+.+.. ++.+|.++...|
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g  130 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG  130 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence            45566678889999999999999999999 7888999999999999999999999775 33667777 999999999999


Q ss_pred             ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++++|+......+...|....+.+.+|.++...|..++|+..++++++
T Consensus       131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence            999999877665555566677777889999999999999998886553

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.65  E-value=7.2e-07  Score=65.65  Aligned_cols=86  Identities=8%  Similarity=0.004  Sum_probs=74.5

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHH-hccCC--hHHHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQAL-FLGRH--YRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l-~~~g~--~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      +.++..+++++|+-..++++.+.| +++.++.+|.++ +..|+  +.+|..++++. ..++.++..++++|.++++.|+|
T Consensus        81 ~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~  160 (198)
T PRK10370         81 EYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY  160 (198)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence            357889999999999999999999 788899999986 67788  58999999665 44788999999999999999999


Q ss_pred             hhhhhhhhhhh
Q 032655           89 TSVCRCSVMLR   99 (136)
Q Consensus        89 ~ea~~~~~~~~   99 (136)
                      ++|+......+
T Consensus       161 ~~Ai~~~~~aL  171 (198)
T PRK10370        161 AQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99988655433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=4.5e-07  Score=73.90  Aligned_cols=117  Identities=14%  Similarity=0.056  Sum_probs=93.7

Q ss_pred             cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      ..+.+.|+-++.|++.++| ....|-+.|+=|.-..+-+.|+...+.+ .++|.+...+|-+|+.+.-++.+.=|+=...
T Consensus       343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq  422 (559)
T KOG1155|consen  343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ  422 (559)
T ss_pred             HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence            3677888888899999988 4556888888888888888888877554 4567788888888888888888776654433


Q ss_pred             hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           97 MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        97 ~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +...-.|..+.++--+|.||+++++.++|+.||+.|+..
T Consensus       423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            333344678899999999999999999999999999865

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.58  E-value=1.2e-06  Score=71.61  Aligned_cols=122  Identities=15%  Similarity=0.055  Sum_probs=103.0

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhh
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      ......++++.|+-.-+-+++..| |+--+-+.+..+...|+.++|.+.+++.. +.+..+...+++|+.+++.|+++||
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence            344556999999999999999999 77788889999999999999999997764 3666688999999999999999998


Q ss_pred             hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.......-..|..+..|.++++.|..+|+..+|...+.+.+.+
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence            87655444355678888999999999999999999998887654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.58  E-value=7.8e-07  Score=63.58  Aligned_cols=95  Identities=7%  Similarity=-0.033  Sum_probs=65.7

Q ss_pred             HHHHHHhccCC-C-----hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc---CcchHHHHHHHHHHccChhhhhhhhh
Q 032655           27 FFANEVAALTN-D-----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR---DLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        27 f~aekl~~~~~-~-----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~---~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      -|+|....+.| +     ....+.+|..+...|++++|+..+++.. ..+.   .....+.+|.++..+|+|++|.....
T Consensus        17 ~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~   96 (172)
T PRK02603         17 VMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYH   96 (172)
T ss_pred             HHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            57777776665 2     2347888999999999999999886642 1122   23578999999999999999987654


Q ss_pred             hhhcccchHhHHHHHHHHHHHHcCC
Q 032655           97 MLRLLKMISSAICFLRGKAYEALGN  121 (136)
Q Consensus        97 ~~~~~~~~~a~i~~l~G~~~~~~~~  121 (136)
                      ..+...|.....+..+|.+|..+|+
T Consensus        97 ~al~~~p~~~~~~~~lg~~~~~~g~  121 (172)
T PRK02603         97 QALELNPKQPSALNNIAVIYHKRGE  121 (172)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcCC
Confidence            4333223334455566777766655

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.57  E-value=1.9e-07  Score=56.45  Aligned_cols=64  Identities=17%  Similarity=0.184  Sum_probs=53.0

Q ss_pred             HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHH
Q 032655           17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAK   80 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~   80 (136)
                      +.+++|+.|+...++++..+| +++..+.+|.|++..|++++|...+++... .+.++....+.|+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            568999999999999999999 888899999999999999999999988754 3344566666554

...

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=1.5e-07  Score=78.83  Aligned_cols=116  Identities=9%  Similarity=-0.051  Sum_probs=79.4

Q ss_pred             CChhhHHHHHHHHhccCCChH-HHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655           20 HLYSSAIFFANEVAALTNDPA-DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~~~~-~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~   97 (136)
                      .++++|+-+++|++.++|... ..-++|.=+..+.+|+.|....+++- .+++|..++|-+|-.+.++++++.|+-...+
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk  514 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK  514 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence            445555555555555555322 23333444455555555555554432 2556778888888888888888888776666


Q ss_pred             hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .++.+|..+.|..-.|.+++++|+.++|+..|++|+.+
T Consensus       515 A~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  515 AVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL  552 (638)
T ss_pred             hhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence            66677888888888899999999999999999998753

>PLN02789 farnesyltranstransferase

Probab=98.54  E-value=1.7e-06  Score=68.15  Aligned_cols=129  Identities=11%  Similarity=0.005  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC-ChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGR-HYRRPFHLLNSS-KIVLRDLRFRYLAAK   80 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g-~~~~A~~~l~~~-~l~~~~~~~~~l~a~   80 (136)
                      ++.+-+|.++.   ..+.++.|+...++++.++| +...|+..+.++...| .+++++..+.+. ...+++..+++..+.
T Consensus        38 ~a~~~~ra~l~---~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~  114 (320)
T PLN02789         38 EAMDYFRAVYA---SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW  114 (320)
T ss_pred             HHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence            34445555543   46799999999999999999 7888999999999999 589999988654 336788889999999


Q ss_pred             HHHHccCh--hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           81 CLEELRSG--TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        81 c~~~l~~~--~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++.++|+.  +++++.....+...|....++.-+|-+++.+|++++|++++.++|+.
T Consensus       115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            99999974  44444443334444556778899999999999999999999999863

>PRK15331 chaperone protein SicA; Provisional

Probab=98.53  E-value=7.4e-07  Score=63.85  Aligned_cols=90  Identities=11%  Similarity=0.094  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhh--h---cccchHhHHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVML--R---LLKMISSAICFLR  112 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~--~---~~~~~~a~i~~l~  112 (136)
                      -+.+|-.|.-+|..|++++|..+++-.-. ++.++..+.-+|-|+-.+|+|++|++.....  +   |+.|     .|-.
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-----~f~a  111 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-----VFFT  111 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-----cchH
Confidence            34455556666666666655554443221 2344445555555555666666655533221  1   1122     2444


Q ss_pred             HHHHHHcCChHHHHHHHHHhh
Q 032655          113 GKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus       113 G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      |.||..+|+.++|..||..++
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~  132 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVN  132 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHH
Confidence            566666666666666655554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.50  E-value=2.3e-07  Score=57.72  Aligned_cols=64  Identities=13%  Similarity=-0.041  Sum_probs=49.1

Q ss_pred             cchHHHHHHHHHHccChhhhhhhhhhhh------c-ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           72 LRFRYLAAKCLEELRSGTSVCRCSVMLR------L-LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~~------~-~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+.+.+|.++..+|+|++|++.....+      . ..+..+..+..+|.+|..+|++++|+++|++|+++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3577888999999999999876443211      1 22345677789999999999999999999999975

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.47  E-value=7.7e-07  Score=53.46  Aligned_cols=60  Identities=13%  Similarity=0.057  Sum_probs=46.7

Q ss_pred             HHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           76 YLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        76 ~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |..|..+++.|+|++|+......+...|....+++.+|.++..+|++++|+..|+++++.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456788888888888887766555555778888888888888888888888888888764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.47  E-value=1.7e-06  Score=66.50  Aligned_cols=96  Identities=10%  Similarity=-0.042  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHH-hccCChHHHHHHHhcCcc-cccC---cchHHHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHH
Q 032655           39 PADVYMQAQAL-FLGRHYRRPFHLLNSSKI-VLRD---LRFRYLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICF  110 (136)
Q Consensus        39 ~~~~~~la~~l-~~~g~~~~A~~~l~~~~l-~~~~---~~~~~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~  110 (136)
                      ....|..|..+ +..|+|.+|+..+++.-- .+.+   +..+|.+|.+++..|+|++|+......+.   +.|....+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45789999998 557999999988766432 2333   47899999999999999999987654432   3455677788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhc
Q 032655          111 LRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       111 l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .+|.++..+|+.++|+..|++.++
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            899999999999999999998875

>PRK15331 chaperone protein SicA; Provisional

Probab=98.45  E-value=1.9e-06  Score=61.72  Aligned_cols=98  Identities=12%  Similarity=0.212  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHH
Q 032655            2 REEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAA   79 (136)
Q Consensus         2 ~~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a   79 (136)
                      .++.++.+-+.-...-.+|++++|.-++.-|+..+| +++-|.-||-|+-..|+|..|+.+..-+ .+...+|...|-.|
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            378889999999999999999999999999999999 9999999999999999999999977443 44668888999999


Q ss_pred             HHHHHccChhhhhhhhhhhh
Q 032655           80 KCLEELRSGTSVCRCSVMLR   99 (136)
Q Consensus        80 ~c~~~l~~~~ea~~~~~~~~   99 (136)
                      .|++.+|+.++|.+......
T Consensus       113 qC~l~l~~~~~A~~~f~~a~  132 (165)
T PRK15331        113 QCQLLMRKAAKARQCFELVN  132 (165)
T ss_pred             HHHHHhCCHHHHHHHHHHHH
Confidence            99999999999998765443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.45  E-value=6.8e-06  Score=64.18  Aligned_cols=90  Identities=14%  Similarity=-0.066  Sum_probs=47.3

Q ss_pred             HHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhc--cc--chHhHHHHHHHHHHHHc
Q 032655           45 QAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL--LK--MISSAICFLRGKAYEAL  119 (136)
Q Consensus        45 la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~--~~--~~~a~i~~l~G~~~~~~  119 (136)
                      +|.++...|++.+|...+++. .+.+.++.....+|.++.+.|++++|+......+.  +.  ......+..+|.++..+
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~  199 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER  199 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence            344555555555555544332 22334444555555555555555555543332221  11  11223344678888888


Q ss_pred             CChHHHHHHHHHhhc
Q 032655          120 GNCAQARLWLVSCDE  134 (136)
Q Consensus       120 ~~~~~A~~~y~~AL~  134 (136)
                      |++++|...|.+++.
T Consensus       200 G~~~~A~~~~~~~~~  214 (355)
T cd05804         200 GDYEAALAIYDTHIA  214 (355)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            888888888877653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.44  E-value=1.5e-06  Score=52.78  Aligned_cols=86  Identities=12%  Similarity=0.064  Sum_probs=72.5

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      ..+...+...++++.|+.+.++++...| ++..++.+|.++...|+++.|+..++.. ...+.+....+..|.++...|+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            3455566778999999999999999998 5678899999999999999999988664 3355667889999999999999


Q ss_pred             hhhhhhhh
Q 032655           88 GTSVCRCS   95 (136)
Q Consensus        88 ~~ea~~~~   95 (136)
                      +++|.+..
T Consensus        84 ~~~a~~~~   91 (100)
T cd00189          84 YEEALEAY   91 (100)
T ss_pred             HHHHHHHH
Confidence            99987543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.44  E-value=2.1e-06  Score=65.34  Aligned_cols=113  Identities=17%  Similarity=0.051  Sum_probs=78.8

Q ss_pred             hhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcc
Q 032655           23 SSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLL  101 (136)
Q Consensus        23 ~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~  101 (136)
                      ..|.-.-=+.+..+|+..+++.++..++..|+-+..+.++.+..+ .+++.......|+..+..|+|.+|+....+....
T Consensus        50 ~~a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l  129 (257)
T COG5010          50 QGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL  129 (257)
T ss_pred             hHHHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence            334444445556667555567788888888887777777766543 3344445555788888888888887766655545


Q ss_pred             cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          102 KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       102 ~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .|..+..+..+|-+|.+.|++++|..-|.+|+++
T Consensus       130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L  163 (257)
T COG5010         130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL  163 (257)
T ss_pred             CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence            5667777778888888888888888888888775

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.41  E-value=6.8e-06  Score=65.03  Aligned_cols=98  Identities=11%  Similarity=-0.082  Sum_probs=84.9

Q ss_pred             ChHHHHH---HHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHH
Q 032655           38 DPADVYM---QAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGK  114 (136)
Q Consensus        38 ~~~~~~~---la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~  114 (136)
                      .-.||+|   +|.||++.|-+.+|-+-++++.-...+++-..++++.|...++.+.|+.....-+|..|..-++.+=+.+
T Consensus       219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR  298 (478)
T KOG1129|consen  219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR  298 (478)
T ss_pred             chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence            3568888   5889999999999999998765456899999999999999999999987666556667777777777899


Q ss_pred             HHHHcCChHHHHHHHHHhhcc
Q 032655          115 AYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       115 ~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++++||+.++|++.|+.+|+.
T Consensus       299 i~eam~~~~~a~~lYk~vlk~  319 (478)
T KOG1129|consen  299 IHEAMEQQEDALQLYKLVLKL  319 (478)
T ss_pred             HHHHHHhHHHHHHHHHHHHhc
Confidence            999999999999999999974

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.40  E-value=9.2e-06  Score=67.82  Aligned_cols=131  Identities=14%  Similarity=0.035  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCL   82 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~   82 (136)
                      ++.-+-=+.+++...|+++.|+.+.|+++..+| .++-.+..|.+|-..|++..|...++.+. ++..+--.-.-.++-+
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            344455566777788899999999999999999 67788888999999999999988886654 3333333334455667


Q ss_pred             HHccChhhhhhhhhhh-h---cc---cchHhHHHHHH--HHHHHHcCChHHHHHHHHHhhcc
Q 032655           83 EELRSGTSVCRCSVML-R---LL---KMISSAICFLR--GKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~~-~---~~---~~~~a~i~~l~--G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++.|+.++|.+...+. .   ++   ...--.+||..  |.+|.+.|++..|...|...+++
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            8889999988755432 1   11   12234467765  99999999999999999887764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.40  E-value=5.6e-06  Score=72.71  Aligned_cols=127  Identities=15%  Similarity=0.054  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCc------------
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDL------------   72 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~------------   72 (136)
                      .+-+..++..+.+.+++++|+-.++..+..+| .+.-.|.+|..++..+++.++.-+ +-..+.+.+.            
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHHHHH
Confidence            34566788888899999999999999999999 778899999999999999888664 2222223333            


Q ss_pred             -------chHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           73 -------RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        73 -------~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                             .+.+.+|.||-++|+++++.......+.-.|..+.+.-..|-.|... +.++|.+.|++|++
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~  177 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY  177 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence                   68899999999999999998765543322255666777889999888 99999999999985

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.38  E-value=6.2e-06  Score=66.48  Aligned_cols=123  Identities=12%  Similarity=0.082  Sum_probs=97.2

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc---Ccc---------------------
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS---SKI---------------------   67 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~---~~l---------------------   67 (136)
                      .+.++..++++.|+-..+++....| +|.....++.+|...|+|++|+.++..   ...                     
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999 888899999999999999999954422   111                     


Q ss_pred             -------------------cccCcchHHHHHHHHHHccChhhhhhhhh------------h---h---------------
Q 032655           68 -------------------VLRDLRFRYLAAKCLEELRSGTSVCRCSV------------M---L---------------   98 (136)
Q Consensus        68 -------------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~------------~---~---------------   98 (136)
                                         .+.++.....+|+.+...|+.++|.+...            .   .               
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~  319 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQ  319 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence                               11255677888999999999999853210            0   0               


Q ss_pred             -hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           99 -RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        99 -~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                       ....|..+...+.+|+++.+.|++.+|.++|+++++.
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~  357 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ  357 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             1134666777889999999999999999999999864

>TIGR00540 hemY_coli hemY protein

Probab=98.37  E-value=9.7e-06  Score=65.48  Aligned_cols=125  Identities=10%  Similarity=-0.050  Sum_probs=93.9

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCCChHHH---HHHHHHHhccCChHHHHHHHhcC-cccccCc--chHHHHHHHHH
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTNDPADV---YMQAQALFLGRHYRRPFHLLNSS-KIVLRDL--RFRYLAAKCLE   83 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~---~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~--~~~~l~a~c~~   83 (136)
                      ...+...+..|+++.|+-..++.+...|++...   .+........++.+.++..+++. +..+.++  .....+|+.++
T Consensus       267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~  346 (409)
T TIGR00540       267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM  346 (409)
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            345677888999999999999999999955531   23333334457888888888654 3356777  66778999999


Q ss_pred             HccChhhhhhhhh--hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           84 ELRSGTSVCRCSV--MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        84 ~l~~~~ea~~~~~--~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.|+|++|.+...  ......| ...++.-+|.++.++|+.++|.++|+++|..
T Consensus       347 ~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       347 KHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999988666  3333233 3333557799999999999999999999864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=5e-06  Score=69.41  Aligned_cols=127  Identities=16%  Similarity=0.110  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~   83 (136)
                      .++.|-+-+..+..++.|+.|+..++|++...| ++++++..-.|+...++|+.|+.+++....+.....+.+=.|=|.+
T Consensus        11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY   90 (652)
T ss_pred             cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence            345677778888899999999999999999999 5556888899999999999999999877653444444478999999


Q ss_pred             HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++++.+||+..... .+  +..-.+..|+++++-++|++++|...|+.-++
T Consensus        91 rlnk~Dealk~~~~-~~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k  138 (652)
T KOG2376|consen   91 RLNKLDEALKTLKG-LD--RLDDKLLELRAQVLYRLERYDEALDIYQHLAK  138 (652)
T ss_pred             HcccHHHHHHHHhc-cc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999876551 11  11233567999999999999999999987654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.36  E-value=9.2e-06  Score=65.75  Aligned_cols=119  Identities=18%  Similarity=0.098  Sum_probs=98.4

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChh
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      .++......+.++.|+-+.+++....|  +.++.+|.++...++-.+|+.++.+.-. .+.+.....+.|+.|.+.|+|+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDP--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCC--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            344555556899999999999998775  5678899999999999999999976542 4567788889999999999999


Q ss_pred             hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655           90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVS  131 (136)
Q Consensus        90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~  131 (136)
                      .|+........-.|..-..|+.++++|..+|++++|......
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            999877766555677778899999999999999999876543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.33  E-value=6.3e-06  Score=54.07  Aligned_cols=89  Identities=11%  Similarity=-0.001  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc---CcchHHHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR---DLRFRYLAA   79 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~---~~~~~~l~a   79 (136)
                      -+-.+......+++++.|+-..+++...+|+    ++..+.+|.+++..|+|.+|+..++... ..+.   .+.+++..|
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3556777888899999999999999999883    4578999999999999999999887643 2233   367899999


Q ss_pred             HHHHHccChhhhhhhhh
Q 032655           80 KCLEELRSGTSVCRCSV   96 (136)
Q Consensus        80 ~c~~~l~~~~ea~~~~~   96 (136)
                      .++.++|++++|.....
T Consensus        84 ~~~~~~~~~~~A~~~~~  100 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQ  100 (119)
T ss_pred             HHHHHhCChHHHHHHHH
Confidence            99999999999987554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.33  E-value=1.8e-05  Score=69.36  Aligned_cols=122  Identities=7%  Similarity=-0.146  Sum_probs=70.5

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHH--HHHHHHccC
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLA--AKCLEELRS   87 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~--a~c~~~l~~   87 (136)
                      .......++|+++.|+...++++...| ++..++.++..+...|++.+|+.+++++. .+.+....-+.  |..+...|+
T Consensus        39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCC
Confidence            333445566888888888888888777 44455577777777788888887777765 33444444455  667777788


Q ss_pred             hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      |++|++.....+...|..+.+++-++.+|-..++.++|++.+++++
T Consensus       118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~  163 (822)
T PRK14574        118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA  163 (822)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence            8877654332222222222333333444444444444444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.31  E-value=4.2e-06  Score=59.43  Aligned_cols=96  Identities=13%  Similarity=0.101  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc---CcchHHHHHHHHHHccChhhhhhhhhhhhcccc-------hHhH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR---DLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM-------ISSA  107 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~---~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~-------~~a~  107 (136)
                      ...++.+|.++..+|+|..|+..+++.. +.+.   .+...+.+|.++...|++++|++.....+...|       .-+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4467888999999999999999887652 2222   234788999999999999999875543222111       2333


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655          108 ICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       108 i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++.++|..+..+|++++|...|.+|+.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~~  141 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAAE  141 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence            444555555599998877777776654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.26  E-value=1.6e-06  Score=52.08  Aligned_cols=53  Identities=15%  Similarity=0.248  Sum_probs=43.7

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      -..++..++|+.|+-..++++...| +++.++.+|.|++..|++.+|+..++..
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556778899999999999999988 7788889999999999999998887664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=9.6e-06  Score=66.97  Aligned_cols=113  Identities=15%  Similarity=0.047  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhhhhhhhhc
Q 032655           23 SSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL  100 (136)
Q Consensus        23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~  100 (136)
                      +.++--.++...+.| -.+.--..|+++|..|+|..|+..+.+ ...+|.+...+...|.|+.++|.+.+|+......+.
T Consensus       341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  341 EKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            344444444444444 223345569999999999999987755 344678888999999999999999999875544333


Q ss_pred             ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          101 LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       101 ~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      -.|.....|+-+|.++..+.++.+|.++|.++|++
T Consensus       421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34566777888899999999999999999999975

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.24  E-value=1.9e-05  Score=65.93  Aligned_cols=114  Identities=15%  Similarity=-0.072  Sum_probs=84.6

Q ss_pred             ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC--------hHHHHHHHhcC-c--ccccCcchHHHHHHHHHHccCh
Q 032655           21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH--------YRRPFHLLNSS-K--IVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~--------~~~A~~~l~~~-~--l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      ....|+-+.+++++++| ....+-.++.|+.....        ...+...+++. .  .++..+..+..+|......|++
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~  436 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT  436 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence            37799999999999999 55556666666655422        23444444432 1  1445667788888898999999


Q ss_pred             hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++|.......++-.| .+..+.++|+++...|+.++|++.|++|+.+
T Consensus       437 ~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        437 DEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999987766554344 4667789999999999999999999999875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.22  E-value=3.3e-05  Score=60.90  Aligned_cols=128  Identities=15%  Similarity=0.042  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCCChH------HHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTNDPA------DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAK   80 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~------~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~   80 (136)
                      -++.++.-|=..-.|+.|+-.|+++..+.|.+-      -..-+|+.+....+.++|..+++++- .++++...-.+.|+
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~  222 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR  222 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence            355566666667889999999999999998432      24558999999999999999997754 47788899999999


Q ss_pred             HHHHccChhhhhhhhhhhhccc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           81 CLEELRSGTSVCRCSVMLRLLK-MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        81 c~~~l~~~~ea~~~~~~~~~~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .....|+|+.|++.......++ ...+.+.-.+-.||..+|+.++...+.+++.+.
T Consensus       223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            9999999999998766544433 345666667889999999999999999987653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.22  E-value=3.6e-06  Score=51.46  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=52.0

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHH
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYL   77 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l   77 (136)
                      .-++.+++|+.|+.+.++++.++| ++..++.+|.|++..|+|..|+..++..- ..+.++...-+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            346789999999999999999999 78889999999999999999999887653 23444444433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.21  E-value=1.5e-06  Score=68.60  Aligned_cols=121  Identities=9%  Similarity=-0.055  Sum_probs=98.0

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhh
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      +-+-..+++++|+.+-..++.+.| +.|.+-..|.-||-.|+++-|+.+.++... --.+++-....|.||+-.++++-+
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence            334455789999999999999999 899999999999999999999998876432 237889999999999999999998


Q ss_pred             hhhhhhhhc---ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           92 CRCSVMLRL---LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        92 ~~~~~~~~~---~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +......+.   +....+.+||++|.+.-..|++..|..||+-||.
T Consensus       378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~  423 (478)
T KOG1129|consen  378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT  423 (478)
T ss_pred             HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence            764433222   2346788899999988889999999999888874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.21  E-value=2.8e-05  Score=60.67  Aligned_cols=120  Identities=10%  Similarity=-0.088  Sum_probs=86.7

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhc----cCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccCh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFL----GRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~----~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      .....++++.|+-+.++++...| ++..+.. +..++.    .|+...+...++... ..+.........|.++...|++
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~  130 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY  130 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence            45667999999999999999999 4444442 444433    455566666665421 1233445666788899999999


Q ss_pred             hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++|+......+...|.....+..+|.++..+|+.++|+.+|.++++.
T Consensus       131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            99988766554444545667788899999999999999999998864

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.21  E-value=2.7e-05  Score=64.85  Aligned_cols=131  Identities=10%  Similarity=-0.040  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhcc--------CCChHHHHH-HHHHHhccCChHHHHHHHhcCccc------c
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAAL--------TNDPADVYM-QAQALFLGRHYRRPFHLLNSSKIV------L   69 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~--------~~~~~~~~~-la~~l~~~g~~~~A~~~l~~~~l~------~   69 (136)
                      ...-++-+...|..+++|+.|+-++.+++..        .|....... +|..|...++|.+|+.+++++.-+      +
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3445667899999999999999999999987        454445444 999999999999999988774321      1


Q ss_pred             cCc---chHHHHHHHHHHccChhhhhhhhh----hh--hc--ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           70 RDL---RFRYLAAKCLEELRSGTSVCRCSV----ML--RL--LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        70 ~~~---~~~~l~a~c~~~l~~~~ea~~~~~----~~--~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .|+   .....+|..+.+.|+|+||.....    +.  ..  ..|.-+..+...|.+++.++.+++|+..|+++|++
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            233   457788999999999999975322    11  11  23456666778999999999999999999999986

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=3.1e-06  Score=69.42  Aligned_cols=116  Identities=13%  Similarity=0.127  Sum_probs=89.5

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~   97 (136)
                      -.+.+|-.+||.++..+- ++......|..-|.+|+++.|.+..+.+.- +.++....|..|..+.++|+.+||++...+
T Consensus       470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k  549 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK  549 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence            467889999999999887 899999999999999999999998876543 447778899999999999999999986432


Q ss_pred             hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      --......+.+.+.+..+|+-+++...|+++|.++..+
T Consensus       550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~sl  587 (840)
T KOG2003|consen  550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL  587 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence            11011135556667777777777777777777776543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.18  E-value=4.7e-05  Score=63.46  Aligned_cols=125  Identities=12%  Similarity=0.003  Sum_probs=94.4

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccC----C--ChH---HHHHHHHHHhccCChHHHHHHHhcCc-c--------cccCc
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALT----N--DPA---DVYMQAQALFLGRHYRRPFHLLNSSK-I--------VLRDL   72 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~----~--~~~---~~~~la~~l~~~g~~~~A~~~l~~~~-l--------~~~~~   72 (136)
                      .+-..+..+++|+.|++..++++++.    +  +|.   ....||..|+..|+|.+|..+++++- +        .+.-.
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            46667888999999999999999886    2  333   36678999999999999988886632 1        11122


Q ss_pred             chHHHHHHHHHHccChhhhhhhhh----hhhc----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           73 RFRYLAAKCLEELRSGTSVCRCSV----MLRL----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        73 ~~~~l~a~c~~~l~~~~ea~~~~~----~~~~----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ......+..+--.+++++|.....    +..+    .++..+.+.-.+|.+|..+|++++|.+.|++|+..
T Consensus       326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~  396 (508)
T KOG1840|consen  326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI  396 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            345666777778899999976332    1221    23467788889999999999999999999999864

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.17  E-value=3.7e-05  Score=59.14  Aligned_cols=89  Identities=8%  Similarity=-0.035  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcC----cccccCcchHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSS----KIVLRDLRFRYLAAK   80 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~----~l~~~~~~~~~l~a~   80 (136)
                      +...+...+..++|+.|+..+++.+...| +   |+..|++|.+|+..|+|..|+..+++.    ...+..+.+++..|.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            33444444567999999999999999999 3   578999999999999999999877553    334567889999999


Q ss_pred             HHHHccChhhhhhhhhh
Q 032655           81 CLEELRSGTSVCRCSVM   97 (136)
Q Consensus        81 c~~~l~~~~ea~~~~~~   97 (136)
                      |+.++|++++|......
T Consensus       226 ~~~~~g~~~~A~~~~~~  242 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQ  242 (263)
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            99999999999876543

>TIGR00540 hemY_coli hemY protein

Probab=98.14  E-value=4.3e-05  Score=61.73  Aligned_cols=119  Identities=13%  Similarity=0.034  Sum_probs=96.2

Q ss_pred             HHcCChhhHHHHHHHHhccCCChH-HHHHHHHHHhccCChHHHHHHHhcCc-ccccC-cchHHHHHHHHHHccChhhhhh
Q 032655           17 VSKHLYSSAIFFANEVAALTNDPA-DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD-LRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~~~~-~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~-~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      +..|+|+.|.-...+.....|+|. .....|......|++.+|.+++++.. ..+.+ .......++.+...|++++|.+
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            446999999999999999999654 56677999999999999999997742 12222 2455667999999999999988


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ....-....|....+..+.|.+|..+|+.++|.+.+.+.++.
T Consensus       175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            766544445667788899999999999999999999887753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.13  E-value=7.8e-05  Score=56.83  Aligned_cols=119  Identities=10%  Similarity=-0.044  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +...+...+.+|+|..|+-.+.|+..+.| +.+.+-.+|-+|-+.|++..|-..+ +...+.+..+......|-.++--|
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g  182 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG  182 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence            44466667778888888888888888887 7777888888888888888886544 555666677778888888888888


Q ss_pred             ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655           87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL  127 (136)
Q Consensus        87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~  127 (136)
                      +++.|...........+..+.+..++..+.-.+|++.+|..
T Consensus       183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            88887654433222223355666677777777777777754

>PLN02789 farnesyltranstransferase

Probab=98.13  E-value=5.2e-05  Score=59.84  Aligned_cols=126  Identities=9%  Similarity=-0.076  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCCh--HHHHHHHhc-CcccccCcchHHHHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHY--RRPFHLLNS-SKIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~--~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~   84 (136)
                      .|..+-..+. ..+++|+-+.++++..+| +...|++.+.++...|++  .+++.++++ ...++++..+++-.+.++..
T Consensus        76 ~R~~iL~~L~-~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~  154 (320)
T PLN02789         76 FRRLCLEALD-ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT  154 (320)
T ss_pred             HHHHHHHHcc-hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            3444443331 258999999999999999 888999999999988874  678888844 45577999999999999999


Q ss_pred             ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc---CCh----HHHHHHHHHhhcc
Q 032655           85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL---GNC----AQARLWLVSCDEF  135 (136)
Q Consensus        85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~---~~~----~~A~~~y~~AL~~  135 (136)
                      +|+|+++++.....+...+...++++.+|.+..++   |..    ++++++.++++++
T Consensus       155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~  212 (320)
T PLN02789        155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA  212 (320)
T ss_pred             hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence            99999998866554443445677888999998877   333    4678888888753

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.13  E-value=0.00011  Score=52.39  Aligned_cols=85  Identities=8%  Similarity=-0.045  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~   82 (136)
                      -+..+...+...+++++|+.+.++++...|+    +..++.+|.++...|+|++|+..+++. ...+.+......+|.++
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  116 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3455566778889999999999999988873    246888999999999999999988654 44567788889999999


Q ss_pred             HHccChhhhh
Q 032655           83 EELRSGTSVC   92 (136)
Q Consensus        83 ~~l~~~~ea~   92 (136)
                      ..+|+...+.
T Consensus       117 ~~~g~~~~a~  126 (172)
T PRK02603        117 HKRGEKAEEA  126 (172)
T ss_pred             HHcCChHhHh
Confidence            9999876653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.13  E-value=5.5e-05  Score=55.66  Aligned_cols=129  Identities=13%  Similarity=0.019  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcC----cccccCcchHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSS----KIVLRDLRFRYL   77 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~----~l~~~~~~~~~l   77 (136)
                      -+.+-..-...+..|+|..|+-..+++....| +   ++..+.+|.++|..|+|..|+..++..    .-.+..+.+.|+
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            34566667788899999999999999999998 2   567999999999999999999877663    223344568999


Q ss_pred             HHHHHHHccChh-----------hhhhhhhhh----------------hccc-chHhHHHHHHHHHHHHcCChHHHHHHH
Q 032655           78 AAKCLEELRSGT-----------SVCRCSVML----------------RLLK-MISSAICFLRGKAYEALGNCAQARLWL  129 (136)
Q Consensus        78 ~a~c~~~l~~~~-----------ea~~~~~~~----------------~~~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y  129 (136)
                      .|.|.+++.+--           +|.......                +..+ ...+.--+.+|+.|.+.|++..|+..|
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~  164 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF  164 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            999998875322           232211100                0011 123333456688888888888888888


Q ss_pred             HHhhc
Q 032655          130 VSCDE  134 (136)
Q Consensus       130 ~~AL~  134 (136)
                      +..++
T Consensus       165 ~~v~~  169 (203)
T PF13525_consen  165 QYVIE  169 (203)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.12  E-value=2.9e-06  Score=51.37  Aligned_cols=56  Identities=11%  Similarity=0.097  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc-Chhhhhhh
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR-SGTSVCRC   94 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~-~~~ea~~~   94 (136)
                      ++.++.+|.+++..|+|.+|+..+++. .+++.++..++.+|.|+.++| ++++|+..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~   60 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIED   60 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence            455667777777777777777766443 335566677777777777777 57776543

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.12  E-value=4.7e-05  Score=59.17  Aligned_cols=91  Identities=13%  Similarity=-0.051  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~   82 (136)
                      .-++|+.-=-.....++|..|+-.-++++.++| ++--....|.+|...|+|..|++-+++ ..+++.+...+.-+|.++
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            456677777778889999999999999999999 777777899999999999999996655 456888999999999999


Q ss_pred             HHccChhhhhhhh
Q 032655           83 EELRSGTSVCRCS   95 (136)
Q Consensus        83 ~~l~~~~ea~~~~   95 (136)
                      ..+|+|++|++..
T Consensus       160 ~~~gk~~~A~~ay  172 (304)
T KOG0553|consen  160 LALGKYEEAIEAY  172 (304)
T ss_pred             HccCcHHHHHHHH
Confidence            9999999998764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.11  E-value=6.1e-05  Score=51.43  Aligned_cols=104  Identities=14%  Similarity=-0.009  Sum_probs=75.7

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcCcc-ccc---CcchHHHHHHHHHH
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLR---DLRFRYLAAKCLEE   84 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~---~~~~~~l~a~c~~~   84 (136)
                      -+-+-..|+.+.|+-+.+++++..++    .+.+..+|.++...|++++|+.++++..- .+.   +......+|.++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            34455679999999999999987542    33588899999999999999999876432 233   55678889999999


Q ss_pred             ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      +|+++||++.....+.   ..             +..+++|+.+|.+-
T Consensus        88 ~gr~~eAl~~~l~~la---~~-------------~~~y~ra~~~ya~~  119 (120)
T PF12688_consen   88 LGRPKEALEWLLEALA---ET-------------LPRYRRAIRFYADE  119 (120)
T ss_pred             CCCHHHHHHHHHHHHH---HH-------------HHHHHHHHHHHHhh
Confidence            9999998875543222   01             11677777777654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.10  E-value=4e-05  Score=58.75  Aligned_cols=93  Identities=13%  Similarity=0.023  Sum_probs=75.7

Q ss_pred             HHHHHHHHhccCChHHHHHHH----hcCcccccCcchHHHHHHHHHHccChhhhhhhhhhh---hcccchHhHHHHHHHH
Q 032655           42 VYMQAQALFLGRHYRRPFHLL----NSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVML---RLLKMISSAICFLRGK  114 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l----~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~---~~~~~~~a~i~~l~G~  114 (136)
                      .|..|.-++++|+|..|...+    +++.-....+.+.|-+|.|++.+|+|++|.......   ....|-.+.+.+-+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            799999999999999997755    455445567889999999999999999997654322   2234556678889999


Q ss_pred             HHHHcCChHHHHHHHHHhhc
Q 032655          115 AYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       115 ~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +..++||.++|...|.+..+
T Consensus       224 ~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999998764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=1.6e-05  Score=65.51  Aligned_cols=120  Identities=10%  Similarity=-0.028  Sum_probs=66.9

Q ss_pred             HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655           16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      +++.++.+.-.-.++++..++| +|+-.|+-||.++..+||++|+.=+++. .+++.+.-...=++-..+++++++++..
T Consensus       370 y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~  449 (606)
T KOG0547|consen  370 YADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK  449 (606)
T ss_pred             HhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445555555555 4444444555555555555555544332 2333444333334444444454444433


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .........|..+.++-+-|.++-.++.+..|++.|..|.++
T Consensus       450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            222111134555666677899999999999999999999865

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.09  E-value=7.2e-05  Score=61.32  Aligned_cols=82  Identities=21%  Similarity=0.066  Sum_probs=73.4

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      .++-.+..++.++|+-.++|++++.| ++--++.+|+.|...|++.+|+..|+.... ++.++..+.++|++|-++|+-.
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence            45667889999999999999999999 577899999999999999999999977654 6789999999999999999988


Q ss_pred             hhhh
Q 032655           90 SVCR   93 (136)
Q Consensus        90 ea~~   93 (136)
                      ++..
T Consensus       426 ~a~~  429 (484)
T COG4783         426 EALL  429 (484)
T ss_pred             HHHH
Confidence            8754

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.08  E-value=5.7e-05  Score=64.78  Aligned_cols=119  Identities=13%  Similarity=0.047  Sum_probs=96.6

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHccChhhhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      -++..++.+.|.+.-..+..++| .+.-+|..|.++-..|++.+|...+ ....++|.|..+.--+|.|+.+.|+-.-|.
T Consensus       659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~  738 (799)
T KOG4162|consen  659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE  738 (799)
T ss_pred             HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence            34555667777778888888888 7778888999999999999999966 455668999999999999999999666666


Q ss_pred             hhhhh----hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           93 RCSVM----LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        93 ~~~~~----~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+-.    .+|  |.--.+||.+|.+++++|+.+.|++||..|+.+
T Consensus       739 ~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  739 KRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            54322    123  345568999999999999999999999999864

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.06  E-value=7.9e-06  Score=49.21  Aligned_cols=67  Identities=15%  Similarity=0.056  Sum_probs=50.0

Q ss_pred             HhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHH
Q 032655           49 LFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKA  115 (136)
Q Consensus        49 l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~  115 (136)
                      ++..|+|.+|+.++++. ...+.+...++.+|.|+++.|++++|...........|..+.+..+++++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            35689999999999775 34678999999999999999999999887654443344445666666653

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.05  E-value=7.1e-05  Score=65.55  Aligned_cols=116  Identities=13%  Similarity=0.067  Sum_probs=68.9

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc---CChHHHHHHHh-cCcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLG---RHYRRPFHLLN-SSKIVLRDLRFRYLAAKCLEELRSGTSVCRC   94 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~---g~~~~A~~~l~-~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~   94 (136)
                      ++.+.|+...+|++.++| +.+...-||..-...   ..|..++.++. .+...+.+|.....+|.=++..|+|+-+.+-
T Consensus       213 ~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l  292 (1018)
T KOG2002|consen  213 GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHL  292 (1018)
T ss_pred             cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence            555555555556555555 444333333332222   22445555442 2344556666666666666667777666542


Q ss_pred             h--hhhhc-ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           95 S--VMLRL-LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        95 ~--~~~~~-~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .  .+... .-+..|.-||.+|++|.++|++++|..+|.+|++.
T Consensus       293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~  336 (1018)
T KOG2002|consen  293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA  336 (1018)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence            2  11111 22456667899999999999999999999998864

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.04  E-value=1.3e-05  Score=65.49  Aligned_cols=67  Identities=6%  Similarity=-0.231  Sum_probs=51.2

Q ss_pred             ccCcchHHHHHHHHHHccChhhhhhhhhhhh--cccchHh-HHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           69 LRDLRFRYLAAKCLEELRSGTSVCRCSVMLR--LLKMISS-AICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~--~~~~~~a-~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.++..++.+|..|+++|+|++|++.....+  ++.+..+ ..++++|.+|..+|+.++|+++|++|+++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4566788899999999999999987655433  3322222 56889999999999999999999998874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.04  E-value=5e-05  Score=52.78  Aligned_cols=83  Identities=13%  Similarity=0.013  Sum_probs=69.9

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCCChH----HHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccC
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTNDPA----DVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~----~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      +...+.+.|+++.|+-..+++....|++.    ..+.+|.+++..|+|++|+..|+...-....+....+.|.++...|+
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~  133 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGD  133 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCC
Confidence            44667788999999999999999887543    57779999999999999999997754444566789999999999999


Q ss_pred             hhhhhhh
Q 032655           88 GTSVCRC   94 (136)
Q Consensus        88 ~~ea~~~   94 (136)
                      +++|...
T Consensus       134 ~~~A~~~  140 (145)
T PF09976_consen  134 YDEARAA  140 (145)
T ss_pred             HHHHHHH
Confidence            9999754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.04  E-value=0.00014  Score=63.31  Aligned_cols=119  Identities=13%  Similarity=0.085  Sum_probs=100.0

Q ss_pred             HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHH-HHhcCcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655           17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFH-LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRC   94 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~-~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~   94 (136)
                      -..|++++|+-.+.-+.-..| ++..++.+|.||-..|+...|+. -+..+-+.+++.+.+...+.--.++|.+++|.-+
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            334999999999999999999 89999999999999999999977 3344445688889999999999999999999876


Q ss_pred             hhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           95 SVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        95 ~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ....+.-.|..-...+-+..+|+++|...+|.+.|.+.+.+
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~  270 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL  270 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence            65544444455566678899999999999999999998864

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.03  E-value=8.7e-05  Score=65.14  Aligned_cols=124  Identities=10%  Similarity=-0.097  Sum_probs=93.1

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccCh
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      .++.-+...|+.+.|+.+++|++.-.| +......+|..+...|+|.+|+.++++.. ..+.++..++.++..+.+.+++
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~  152 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG  152 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence            566777788999999999999992222 33344445789999999999999997753 3667788888888999999999


Q ss_pred             hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++|++.........|. ......++.++..+++..+|++.|+++++.
T Consensus       153 ~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~  198 (822)
T PRK14574        153 GVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDALQASSEAVRL  198 (822)
T ss_pred             HHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence            9998876543322222 222245577777788888899999999864

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.03  E-value=4.6e-05  Score=52.05  Aligned_cols=96  Identities=17%  Similarity=0.023  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCc---c-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccc---hHhHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSK---I-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM---ISSAICFL  111 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~---l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~---~~a~i~~l  111 (136)
                      |+-.|..|.++-..|++.+|+.+.++..   + ......+..-+|.++..+|++++|+..........|   ....+...
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            4567899999999999999999887642   2 123346888899999999999999876543332222   36666777


Q ss_pred             HHHHHHHcCChHHHHHHHHHhhc
Q 032655          112 RGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       112 ~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .+.++..+|+.++|+.++-.+|.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            88999999999999999988764

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.01  E-value=7.7e-05  Score=52.90  Aligned_cols=88  Identities=11%  Similarity=-0.121  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCCh----HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDP----ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK   80 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~----~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~   80 (136)
                      ..-.-.+...+..+++|+.|+.+.++++.+.|++    ..++.+|.++...|++++|+..+++. .+.+.+....+.+|.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            3344556677788899999999999999998743    35888999999999999999988664 335566677777777


Q ss_pred             HHH-------HccChhhhhh
Q 032655           81 CLE-------ELRSGTSVCR   93 (136)
Q Consensus        81 c~~-------~l~~~~ea~~   93 (136)
                      ++.       ++|++++|..
T Consensus       115 i~~~~~~~~~~~g~~~~A~~  134 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEA  134 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHH
Confidence            777       7788887754

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.99  E-value=0.00041  Score=52.66  Aligned_cols=126  Identities=8%  Similarity=-0.087  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChH---HHHHHHHHHhccCChHHHHHHHhcC----cccccCcchHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPA---DVYMQAQALFLGRHYRRPFHLLNSS----KIVLRDLRFRYLAAK   80 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~---~~~~la~~l~~~g~~~~A~~~l~~~----~l~~~~~~~~~l~a~   80 (136)
                      +-......+..++|+.|+-..+++....| ++.   ..+++|.+++..|+|..|+..+++.    .-++..+.+.|+.|.
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            44455667788999999999999999999 433   4699999999999999999877653    324455678999999


Q ss_pred             HHHHccC-----h-------------hhhhhhhhhh----------------hccc-chHhHHHHHHHHHHHHcCChHHH
Q 032655           81 CLEELRS-----G-------------TSVCRCSVML----------------RLLK-MISSAICFLRGKAYEALGNCAQA  125 (136)
Q Consensus        81 c~~~l~~-----~-------------~ea~~~~~~~----------------~~~~-~~~a~i~~l~G~~~~~~~~~~~A  125 (136)
                      |...+++     +             .+|.+.....                +..+ ...+.--+..|+-|.+.|++.-|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA  194 (243)
T PRK10866        115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV  194 (243)
T ss_pred             hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            9877752     1             1222211100                0011 12333345678888888888888


Q ss_pred             HHHHHHhhc
Q 032655          126 RLWLVSCDE  134 (136)
Q Consensus       126 ~~~y~~AL~  134 (136)
                      +.-++..++
T Consensus       195 ~~r~~~v~~  203 (243)
T PRK10866        195 VNRVEQMLR  203 (243)
T ss_pred             HHHHHHHHH
Confidence            888777664

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.99  E-value=4.3e-05  Score=56.25  Aligned_cols=96  Identities=8%  Similarity=-0.047  Sum_probs=70.1

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCcc----cccCcchHHHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI----VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICF  110 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l----~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~  110 (136)
                      +++.+|..|..++..|+|.+|+..++....    .+..+.+.+.+|.++++.|+|++|.......+.   ..|....+.|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            567899999999999999999998876432    334557899999999999999999876654433   3345666788


Q ss_pred             HHHHHHHHcC-----------ChHHHHHHHHHhh
Q 032655          111 LRGKAYEALG-----------NCAQARLWLVSCD  133 (136)
Q Consensus       111 l~G~~~~~~~-----------~~~~A~~~y~~AL  133 (136)
                      ++|.++..+.           +..+|+..|+.-+
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li  117 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI  117 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence            9999875543           3347777777655

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.95  E-value=1.5e-05  Score=41.81  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          106 SAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+++.+|.+|..+|++++|+++|++||++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357889999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=6.1e-05  Score=62.76  Aligned_cols=119  Identities=8%  Similarity=-0.070  Sum_probs=96.8

Q ss_pred             HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhh
Q 032655           16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      .+++|...+|+-+.|.++..+| +.+.|-+||.+...+++=..|+..|++ .++++.+....-.+|.|+...|.=.+|+.
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            4678999999999999999999 889999999999999999999998866 46789999999999999999999988853


Q ss_pred             hhh--------------------------------------hhhc---ccc--hHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655           94 CSV--------------------------------------MLRL---LKM--ISSAICFLRGKAYEALGNCAQARLWLV  130 (136)
Q Consensus        94 ~~~--------------------------------------~~~~---~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~  130 (136)
                      ...                                      ..++   ..|  ..+.+..-+|.+|--.|.+++|+.||+
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~  454 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE  454 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence            110                                      0011   122  566677778888888888888888888


Q ss_pred             Hhhc
Q 032655          131 SCDE  134 (136)
Q Consensus       131 ~AL~  134 (136)
                      .||.
T Consensus       455 ~AL~  458 (579)
T KOG1125|consen  455 AALQ  458 (579)
T ss_pred             HHHh
Confidence            8875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=7.8e-05  Score=61.53  Aligned_cols=122  Identities=10%  Similarity=-0.041  Sum_probs=96.3

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhh
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      +-.+-.++|+.|+-=++|+.++.| +.-....++..+|+.+++..+.+.++.... .|.++++..++|..+...++|++|
T Consensus       402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A  481 (606)
T KOG0547|consen  402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA  481 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence            334556899999999999999999 666788899999999999999998866543 678999999999999999999999


Q ss_pred             hhhhh----------------------------hh--hc----------ccchHhHHHH-HHHHHHHHcCChHHHHHHHH
Q 032655           92 CRCSV----------------------------ML--RL----------LKMISSAICF-LRGKAYEALGNCAQARLWLV  130 (136)
Q Consensus        92 ~~~~~----------------------------~~--~~----------~~~~~a~i~~-l~G~~~~~~~~~~~A~~~y~  130 (136)
                      ++-.+                            |.  ++          .+++.+...+ -+|++-..+|+.++|++.|.
T Consensus       482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE  561 (606)
T KOG0547|consen  482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE  561 (606)
T ss_pred             HHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            63110                            00  00          2334444444 78999999999999999999


Q ss_pred             Hhhcc
Q 032655          131 SCDEF  135 (136)
Q Consensus       131 ~AL~~  135 (136)
                      +++.+
T Consensus       562 ksa~l  566 (606)
T KOG0547|consen  562 KSAQL  566 (606)
T ss_pred             HHHHH
Confidence            98643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.00018  Score=60.36  Aligned_cols=123  Identities=15%  Similarity=0.029  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCCChHHH--HHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADV--YMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~--~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +|+-|=--|...+|++|+.+-++-.+..  ...+  |..|.|.|+.|..++|+..++.  ++........|.|+.++++|
T Consensus        49 ~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~~~--~~~~~~~ll~L~AQvlYrl~  124 (652)
T KOG2376|consen   49 IRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALKTLKG--LDRLDDKLLELRAQVLYRLE  124 (652)
T ss_pred             HhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHHHHhc--ccccchHHHHHHHHHHHHHh
Confidence            4555555566899999995555433322  2223  5899999999999999999984  34556678999999999999


Q ss_pred             Chhhhhhhhh-------------h-----------hh------cccch-HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           87 SGTSVCRCSV-------------M-----------LR------LLKMI-SSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        87 ~~~ea~~~~~-------------~-----------~~------~~~~~-~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|+||.+...             .           ..      ...|. .=..+|+...++-..|++.+|++-+.+|+++
T Consensus       125 ~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  125 RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI  204 (652)
T ss_pred             hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999975320             0           00      02232 3346789999999999999999999999654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.88  E-value=2.2e-05  Score=65.36  Aligned_cols=98  Identities=12%  Similarity=0.017  Sum_probs=82.4

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                      +|+--.-||..|+.+|+|+||+.+++.+.. .|.+...++=+|-.+..-.+..||++.....+.--|.--.+.|++|..|
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~  508 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC  508 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence            555566689999999999999999988754 6688899999999999999999999877655543344455669999999


Q ss_pred             HHcCChHHHHHHHHHhhcc
Q 032655          117 EALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+|-+++|+.+|-.||.+
T Consensus       509 mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  509 MNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHh
Confidence            9999999999999999864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.86  E-value=0.00022  Score=54.76  Aligned_cols=87  Identities=11%  Similarity=0.062  Sum_probs=71.1

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC----ChHHHHHHHHHHhccCChHHHHHHH----hcCcccccCcchHHHHHHH
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN----DPADVYMQAQALFLGRHYRRPFHLL----NSSKIVLRDLRFRYLAAKC   81 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~----~~~~~~~la~~l~~~g~~~~A~~~l----~~~~l~~~~~~~~~l~a~c   81 (136)
                      -..--+.+-.++|.+|.--+-.-+.-.|    .|+..||||+|+|..|+|.+|...+    +.+.-.++.|+..+-+|.|
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~  224 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS  224 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence            3334445556889999999999998888    4789999999999999999997754    4444456788999999999


Q ss_pred             HHHccChhhhhhhhh
Q 032655           82 LEELRSGTSVCRCSV   96 (136)
Q Consensus        82 ~~~l~~~~ea~~~~~   96 (136)
                      ..++|+.++|.....
T Consensus       225 ~~~l~~~d~A~atl~  239 (262)
T COG1729         225 LGRLGNTDEACATLQ  239 (262)
T ss_pred             HHHhcCHHHHHHHHH
Confidence            999999999976544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.85  E-value=0.00017  Score=63.33  Aligned_cols=127  Identities=14%  Similarity=-0.044  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC----ChHHHHHHHhcCcc-cccCcchHHHHHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGR----HYRRPFHLLNSSKI-VLRDLRFRYLAAKC   81 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g----~~~~A~~~l~~~~l-~~~~~~~~~l~a~c   81 (136)
                      .+.++.+.+|..+.++.|.|.+|+++...| +++++..+|..|...+    +-++|..++.+... .+.+...+..+|+.
T Consensus       344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql  423 (1018)
T KOG2002|consen  344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL  423 (1018)
T ss_pred             cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            356788999999999999999999999999 8999999999988886    56788888866532 45777888889988


Q ss_pred             HHHccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           82 LEELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        82 ~~~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +....-|.. ++......+     +.++..-+...+|..+-.+|++++|.+.|++|+..
T Consensus       424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~  481 (1018)
T KOG2002|consen  424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK  481 (1018)
T ss_pred             HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence            887777766 554332211     22345566778999999999999999999999864

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.00029  Score=57.35  Aligned_cols=129  Identities=15%  Similarity=0.065  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHH-HHHhcc-CChHHHHHHHhcC-cccccCcchHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQA-QALFLG-RHYRRPFHLLNSS-KIVLRDLRFRYLAAKC   81 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la-~~l~~~-g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c   81 (136)
                      ++-.+++|+.|+..+.+++|+..|.-..-..| +..++-++| .+++-. .--++|-+++++. .+.|.........|.-
T Consensus       368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL  447 (564)
T KOG1174|consen  368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAEL  447 (564)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHH
Confidence            45678999999999999999999999998888 888888886 444443 3346777777664 3456677888999999


Q ss_pred             HHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           82 LEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        82 ~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |..-|++++++.-.+..+-..+ .-..+-.+|.++.+++-+++|.+.|..||++
T Consensus       448 ~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  448 CQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            9999999999875555443222 3345567899999999999999999999975

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.00021  Score=57.33  Aligned_cols=80  Identities=15%  Similarity=0.037  Sum_probs=63.4

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCCChH--HHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTNDPA--DVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~~~~--~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      .++.+.+.+|+-|+-+-|-...+....+  --.|+|.|+|..|+|++|+...+...- +....+....+|-|.|-+|.|.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence            5678889999999999998886665333  367899999999999999886654322 2344566778999999999999


Q ss_pred             hhh
Q 032655           90 SVC   92 (136)
Q Consensus        90 ea~   92 (136)
                      ||.
T Consensus       109 eA~  111 (557)
T KOG3785|consen  109 EAK  111 (557)
T ss_pred             HHH
Confidence            985

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=4.3e-05  Score=61.43  Aligned_cols=94  Identities=16%  Similarity=0.100  Sum_probs=61.4

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcCcc----------------cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchH
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSSKI----------------VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMIS  105 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~~l----------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~  105 (136)
                      .-.-|+.||..|+|..|..-.++...                ...-..|...+|.|+.++++|.+|+..-...+..-|..
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            34456777777777766665443110                00123578888888888888888876544333211223


Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          106 SAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .-..|-+|+++..+|.++.|...|++|+++
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            334588888888888888888888888864

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.83  E-value=0.0003  Score=61.28  Aligned_cols=122  Identities=11%  Similarity=0.076  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHH
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAA   79 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a   79 (136)
                      ++..+-+-.+.+-.++.|.|.+|+-+...+....+  +..-|+.+|.||...|.|++|+...++. .+.|.|.+.+..++
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La  490 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA  490 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence            34556667777888888888888888888887776  3335777888888888888888877664 33677888888888


Q ss_pred             HHHHHccChhhhhhhhhhh---------hcccchHhHHHHHHHHHHHHcCChHH
Q 032655           80 KCLEELRSGTSVCRCSVML---------RLLKMISSAICFLRGKAYEALGNCAQ  124 (136)
Q Consensus        80 ~c~~~l~~~~ea~~~~~~~---------~~~~~~~a~i~~l~G~~~~~~~~~~~  124 (136)
                      -.+.++|++++|++.....         .+..+...-|.+.+-.++...|++++
T Consensus       491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            8888888888887754421         11234566677777888888888877

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.81  E-value=3.6e-05  Score=40.21  Aligned_cols=30  Identities=27%  Similarity=0.420  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          106 SAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+++.+|.+|..+|++++|.++|++|+++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            357899999999999999999999999874

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.81  E-value=0.00032  Score=49.20  Aligned_cols=84  Identities=12%  Similarity=0.079  Sum_probs=39.2

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCc----ccccCcchHHHHHHHHHHccChhhhhhhhhhhh--c-ccchHhHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSK----IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR--L-LKMISSAICF  110 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~----l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~--~-~~~~~a~i~~  110 (136)
                      ++.++|.-|+-.+..|+|.+|++.++...    ..+-.....+-+|-++++.|+|++|.......+  . ..|...-++|
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            34455555555555555555555443321    111233445555555555555555554433221  1 1233344455


Q ss_pred             HHHHHHHHcCC
Q 032655          111 LRGKAYEALGN  121 (136)
Q Consensus       111 l~G~~~~~~~~  121 (136)
                      ++|.++-.++.
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            55555555544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.00079  Score=51.61  Aligned_cols=125  Identities=11%  Similarity=-0.063  Sum_probs=69.1

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccC
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~   87 (136)
                      .+++.-.++.++...|-+.-..+...+| ++.-.-+.|.-+=-+|+|+.|++++++.-- +|.+...+-=.--..-.+|+
T Consensus        56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK  135 (289)
T KOG3060|consen   56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK  135 (289)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence            3344445555555556555555555555 444555555555555666666665554322 23333332222233334455


Q ss_pred             hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      --+|+.+...+++..+.....|.-+..+|-..|.+++|+-||++.+-
T Consensus       136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            55555444444444455666777777788888888888888777653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=9.7e-05  Score=61.16  Aligned_cols=92  Identities=15%  Similarity=0.054  Sum_probs=75.6

Q ss_pred             HHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCCh
Q 032655           44 MQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNC  122 (136)
Q Consensus        44 ~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~  122 (136)
                      -.|...+-.|+|..|+.+. +...+++.+.--+-...-|+..+|+|++|+.......+..|.-+-.+.-+|-.+..+|++
T Consensus         7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen    7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence            4577888899999998866 555666654444567788999999999999877776666777888888999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 032655          123 AQARLWLVSCDEF  135 (136)
Q Consensus       123 ~~A~~~y~~AL~~  135 (136)
                      ++|+..|++.|+.
T Consensus        87 ~eA~~ay~~GL~~   99 (539)
T KOG0548|consen   87 EEAILAYSEGLEK   99 (539)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999999875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00022  Score=57.86  Aligned_cols=116  Identities=12%  Similarity=-0.026  Sum_probs=87.6

Q ss_pred             CChhhHHHHHHHHhccCCCh-------------HHHHHHHHHHhccCChHHHHHHHh-cCccccc----CcchHHHHHHH
Q 032655           20 HLYSSAIFFANEVAALTNDP-------------ADVYMQAQALFLGRHYRRPFHLLN-SSKIVLR----DLRFRYLAAKC   81 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~~~-------------~~~~~la~~l~~~g~~~~A~~~l~-~~~l~~~----~~~~~~l~a~c   81 (136)
                      .+.+.|+....+.+.+.|+.             +.+=.-|.=.|.+|.|..|.+..+ ...++|.    +..|++..|..
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v  296 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV  296 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence            56788999999999999842             235556888999999999999774 4455553    44688999999


Q ss_pred             HHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           82 LEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        82 ~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ...+|+.+||+..-...+.-.+.-.-.++.+|.|+..++..++|++.|++|.+.
T Consensus       297 ~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  297 NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999986433322111122223567799999999999999999999865

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=6.1e-05  Score=39.14  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          106 SAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+++.+|.+|..+|++++|+++|++|+++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356889999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8)

Probab=97.70  E-value=0.00035  Score=49.06  Aligned_cols=84  Identities=25%  Similarity=0.350  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-------------------------------ChHHHHHHHHHHhc
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-------------------------------DPADVYMQAQALFL   51 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-------------------------------~~~~~~~la~~l~~   51 (136)
                      .++-..||..|+.|-+.|.+.+|-+.||.+..+.|                               ...+.|.+|..||.
T Consensus         7 ~~ir~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD   86 (142)
T PF04049_consen    7 KEIRSELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFD   86 (142)
T ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhc
Confidence            46778899999999999999999999999998871                               01279999999999


Q ss_pred             cCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhh
Q 032655           52 GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        52 ~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      .++|+||.++|++..    ++.+.||.-=+.+-.|+-+.
T Consensus        87 ~kEy~RaA~~L~~~~----s~~~~FL~lYs~YLa~EKr~  121 (142)
T PF04049_consen   87 CKEYDRAAHVLKDCK----SPKALFLRLYSRYLAGEKRK  121 (142)
T ss_pred             hhHHHHHHHHHccCC----CchHHHHHHHHHHHHHHHHH
Confidence            999999999998853    55555655555555444443

This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.69  E-value=0.0013  Score=52.66  Aligned_cols=86  Identities=12%  Similarity=0.084  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~   84 (136)
                      .+||+.+..+...|++.+|+-+-++++.++| +..-.-.-|.||..-|++..|++=++.. ++...+.+..|-.+.-++.
T Consensus       156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~  235 (504)
T KOG0624|consen  156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT  235 (504)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence            3677777778888999999999999999999 7777777899999999999999977553 4555677777888888888


Q ss_pred             ccChhhhh
Q 032655           85 LRSGTSVC   92 (136)
Q Consensus        85 l~~~~ea~   92 (136)
                      .|+.++++
T Consensus       236 vgd~~~sL  243 (504)
T KOG0624|consen  236 VGDAENSL  243 (504)
T ss_pred             hhhHHHHH
Confidence            88777753

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.69  E-value=6.4e-05  Score=40.28  Aligned_cols=27  Identities=15%  Similarity=0.162  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          109 CFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +..+|.+|..+|++++|+++|+++|.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            568899999999999999999998854

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.68  E-value=0.00081  Score=57.47  Aligned_cols=117  Identities=12%  Similarity=-0.083  Sum_probs=69.5

Q ss_pred             HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhh----
Q 032655           18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSV----   91 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea----   91 (136)
                      .+|..++=.-+..|+++.+| .+.-|..++.-....|+.-.|..+|.. +...+.+.+.++.+-+..++..+++.|    
T Consensus       562 ~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~ll  641 (913)
T KOG0495|consen  562 SHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLL  641 (913)
T ss_pred             hcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence            34555555555556666666 333455555555566665555555533 222344555555555555555555554    


Q ss_pred             -----------------------------hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           92 -----------------------------CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        92 -----------------------------~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                                                   ..-.+.-+...|.---+++.+|++++.+++.+.|.+.|..-++
T Consensus       642 akar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k  713 (913)
T KOG0495|consen  642 AKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK  713 (913)
T ss_pred             HHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence                                         2211111113456666788999999999999999999987655

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.68  E-value=0.00011  Score=44.75  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             HHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhh
Q 032655           46 AQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR   99 (136)
Q Consensus        46 a~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~   99 (136)
                      ...+...++|..|+.+++.. .+.|.++..++..|.|++++|+|++|.......+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            56778888888888888654 3467788888888888888888888877655443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00062  Score=52.89  Aligned_cols=122  Identities=9%  Similarity=-0.113  Sum_probs=87.3

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhh-
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTS-   90 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~e-   90 (136)
                      .+..+.+..+.-+--.+.-+..+| +.+.|..||..|..+|++..|...+.+ ..+.+.++.....+|..++-...-.. 
T Consensus       130 a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~t  209 (287)
T COG4235         130 AQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMT  209 (287)
T ss_pred             ccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCccc
Confidence            333444556666667777788888 889999999999999999999987755 46678899999989988876653322 


Q ss_pred             --hhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           91 --VCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        91 --a~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                        +.+-....+..-|..-...+++|..+...|++.+|+..+++-|+.
T Consensus       210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence              111111111122334445588899999999999999999887764

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.59  E-value=0.00031  Score=52.43  Aligned_cols=92  Identities=16%  Similarity=0.017  Sum_probs=65.5

Q ss_pred             HHHHHHhccCChHHHHHHHhcC-cccc-----cCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655           44 MQAQALFLGRHYRRPFHLLNSS-KIVL-----RDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE  117 (136)
Q Consensus        44 ~la~~l~~~g~~~~A~~~l~~~-~l~~-----~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~  117 (136)
                      -=|.=+|.+|.|..|..-...+ .+.+     ...-|+...|-|..++++++.|++.-.+.+.-.|.---...-++.+|+
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            3467799999998887644332 2222     123467789999999999999987655444323322223346699999


Q ss_pred             HcCChHHHHHHHHHhhcc
Q 032655          118 ALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       118 ~~~~~~~A~~~y~~AL~~  135 (136)
                      +++.+++|++-|++.|+.
T Consensus       180 k~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILES  197 (271)
T ss_pred             hhhhHHHHHHHHHHHHHh
Confidence            999999999999998864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.58  E-value=0.0013  Score=56.47  Aligned_cols=123  Identities=9%  Similarity=-0.065  Sum_probs=65.4

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccC--CChHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHHH
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALT--NDPADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~--~~~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~~   84 (136)
                      -.+|.-+..+|++++|+-+.++.....  |+......+..++...|..++|.++++...   ....+...+......+.+
T Consensus       395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r  474 (697)
T PLN03081        395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR  474 (697)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence            345555555666666666666655432  333334444445555555555555553321   011222334445555555


Q ss_pred             ccChhhhh--------------------------------hhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           85 LRSGTSVC--------------------------------RCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        85 l~~~~ea~--------------------------------~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      .|+++||.                                .....-+...|.....+.+++.+|.+.|+.++|.+.+++.
T Consensus       475 ~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m  554 (697)
T PLN03081        475 EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL  554 (697)
T ss_pred             cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence            55555553                                2221111112333445667888999999999999988764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.58  E-value=0.00063  Score=51.62  Aligned_cols=83  Identities=11%  Similarity=0.047  Sum_probs=64.3

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCc---chHHHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDL---RFRYLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICF  110 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~---~~~~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~  110 (136)
                      +++..|..|.-++..|+|.+|+..++...- .+.++   ...+.+|.+++++|+|++|+......+.   +.|....+.|
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            567799999999999999999998877532 23333   3348899999999999999987654332   4466777889


Q ss_pred             HHHHHHHHcC
Q 032655          111 LRGKAYEALG  120 (136)
Q Consensus       111 l~G~~~~~~~  120 (136)
                      ++|.++..++
T Consensus       111 ~~g~~~~~~~  120 (243)
T PRK10866        111 MRGLTNMALD  120 (243)
T ss_pred             HHHHhhhhcc
Confidence            9999976665

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.58  E-value=0.00037  Score=56.54  Aligned_cols=81  Identities=19%  Similarity=0.212  Sum_probs=70.3

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      +++-++..++-.+|+-+..+++..+| +.+-+...|..+...|+|+.|+.+.+++ .+.|....+++.+|+||.++|+|+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence            45556677888999999999999998 7778888999999999999999988665 446788899999999999999999


Q ss_pred             hhh
Q 032655           90 SVC   92 (136)
Q Consensus        90 ea~   92 (136)
                      +|+
T Consensus       286 ~AL  288 (395)
T PF09295_consen  286 NAL  288 (395)
T ss_pred             HHH
Confidence            996

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.54  E-value=0.0008  Score=47.23  Aligned_cols=81  Identities=12%  Similarity=0.074  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC----ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCc---chHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN----DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDL---RFRYLA   78 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~----~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~---~~~~l~   78 (136)
                      +.+-.--+..+..++|++|+...+.+.+-.|    .+..-..+|-++|.+|+|..|+..+++. .++|.|+   -+.|..
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            3455667788999999999999999999998    4667899999999999999999988775 4455555   578999


Q ss_pred             HHHHHHccC
Q 032655           79 AKCLEELRS   87 (136)
Q Consensus        79 a~c~~~l~~   87 (136)
                      |.+.+++..
T Consensus        91 gL~~~~~~~   99 (142)
T PF13512_consen   91 GLSYYEQDE   99 (142)
T ss_pred             HHHHHHHhh
Confidence            999999876

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.0015  Score=53.41  Aligned_cols=132  Identities=13%  Similarity=0.024  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHH
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKC   81 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c   81 (136)
                      .+.-+.....+-|.-.|.+..+.|..-...+..| |..-+--+|.|+|.+|++.+|+..+++.. +++-....-=++|--
T Consensus       196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L  275 (564)
T KOG1174|consen  196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL  275 (564)
T ss_pred             HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH
Confidence            3444555666677777888889888888888888 55567778999999999999988776643 344445555556666


Q ss_pred             HHHccChhhh----------------------------------hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655           82 LEELRSGTSV----------------------------------CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL  127 (136)
Q Consensus        82 ~~~l~~~~ea----------------------------------~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~  127 (136)
                      +-.-|.+++-                                  +.-.++.++-.|..-..+.++|.+...+|+.++|+-
T Consensus       276 L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I  355 (564)
T KOG1174|consen  276 LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI  355 (564)
T ss_pred             HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence            6666666653                                  111111122223344567899999999999999999


Q ss_pred             HHHHhhcc
Q 032655          128 WLVSCDEF  135 (136)
Q Consensus       128 ~y~~AL~~  135 (136)
                      .|+.|..+
T Consensus       356 aFR~Aq~L  363 (564)
T KOG1174|consen  356 AFRTAQML  363 (564)
T ss_pred             HHHHHHhc
Confidence            99998654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.48  E-value=0.00017  Score=61.02  Aligned_cols=119  Identities=8%  Similarity=-0.013  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l   85 (136)
                      .+|..+. |-+..||...+-+++.++.-+| .++++-..|..+...|+-++|+.+.+... .+.++.-|++.+|......
T Consensus        10 lF~~~lk-~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen   10 LFRRALK-CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHH-HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            3455444 5566899999999999999888 78899999999999999999999886643 3668888999999999999


Q ss_pred             cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655           86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL  127 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~  127 (136)
                      ++|+||+.+..-.+.--|....|+.=+..+--.++.++-..+
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~  130 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE  130 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence            999999876543332223455555544555555555554443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.48  E-value=0.0025  Score=48.22  Aligned_cols=78  Identities=5%  Similarity=-0.190  Sum_probs=50.4

Q ss_pred             HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccc---cCcchHHHHHHHHHHccChhhh
Q 032655           16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVL---RDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~---~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      +-..|..+.|---.++++++.| +-+-.-.+|.=+...|+|++|+..++.+..++   .....+-.+|.|-.+.|+++.|
T Consensus        79 Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A  158 (250)
T COG3063          79 YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQA  158 (250)
T ss_pred             HHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhH
Confidence            3445666777777777777777 33344556777777777777777666554433   3456666777777777777776


Q ss_pred             hh
Q 032655           92 CR   93 (136)
Q Consensus        92 ~~   93 (136)
                      .+
T Consensus       159 ~~  160 (250)
T COG3063         159 EE  160 (250)
T ss_pred             HH
Confidence            43

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.47  E-value=0.0032  Score=56.93  Aligned_cols=84  Identities=12%  Similarity=0.005  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhcc----CCChHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAAL----TNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCL   82 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~----~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~   82 (136)
                      ...+|.-+...++++.|..+.+.+...    .|+...+..+..+|.+.|++++|.++++...-  ...++..+..+..+|
T Consensus       545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay  624 (1060)
T PLN03218        545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC  624 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence            444555555555555555555555432    23333344445555555555555555543211  122334445555555


Q ss_pred             HHccChhhhh
Q 032655           83 EELRSGTSVC   92 (136)
Q Consensus        83 ~~l~~~~ea~   92 (136)
                      .+.|++++|.
T Consensus       625 ~k~G~~deAl  634 (1060)
T PLN03218        625 SQKGDWDFAL  634 (1060)
T ss_pred             HhcCCHHHHH
Confidence            5555555553

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.45  E-value=0.0005  Score=60.79  Aligned_cols=120  Identities=10%  Similarity=-0.081  Sum_probs=92.7

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      .+++.++...|+-|+.-++-.+| +.+.|.-+|.+|-..|.|..|++...++.+ .|.+.-.+|-.|...-.+|+|++++
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence            35677999999999999999999 888999999999999999999999977654 7788889999999999999999999


Q ss_pred             hhhhhhh---c-c--cchHhHHHH-HHHHHHHHcCChHHHHHHHHHhhc
Q 032655           93 RCSVMLR---L-L--KMISSAICF-LRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        93 ~~~~~~~---~-~--~~~~a~i~~-l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +..++..   . .  .-.+.+-++ ...+.+-..|-..+|+.+++++++
T Consensus       651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie  699 (1238)
T KOG1127|consen  651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE  699 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            8765321   0 1  112222233 336666666666777777766654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.45  E-value=0.00012  Score=38.93  Aligned_cols=31  Identities=10%  Similarity=0.086  Sum_probs=28.1

Q ss_pred             HHHHhccCC-ChHHHHHHHHHHhccCChHHHH
Q 032655           29 ANEVAALTN-DPADVYMQAQALFLGRHYRRPF   59 (136)
Q Consensus        29 aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~   59 (136)
                      .+|++.++| +++.++.+|.+|...|++++|.
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            578899999 8999999999999999999885

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.45  E-value=0.00074  Score=59.71  Aligned_cols=102  Identities=8%  Similarity=-0.116  Sum_probs=80.7

Q ss_pred             ccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhh---------h----h
Q 032655           34 ALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSV---------M----L   98 (136)
Q Consensus        34 ~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~---------~----~   98 (136)
                      ..+| +.+.+..++..+...|++++|+.+++.+. ..+..+.++|..|..++..+++.++.--..         +    +
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHH
Confidence            3345 77889999999999999999999997543 367899999999999999999999742110         0    0


Q ss_pred             ----hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           99 ----RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        99 ----~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                          +-..+....+++-+|.||+++|++++|...|.++|++
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~  145 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA  145 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence                0122334457789999999999999999999999986

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.44  E-value=0.0066  Score=44.86  Aligned_cols=119  Identities=13%  Similarity=0.032  Sum_probs=86.3

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcCccccc----CcchHHHHHHHHHHcc
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSSKIVLR----DLRFRYLAAKCLEELR   86 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~----~~~~~~l~a~c~~~l~   86 (136)
                      ..+....+ +..-.+++....+| +   .-....+|...+-.|+++.|..-|+...-.++    -+-...-+|+..+++|
T Consensus        62 ~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~  140 (207)
T COG2976          62 KAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQK  140 (207)
T ss_pred             HHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhh
Confidence            34444444 66677788777776 2   22466789999999999999998875432122    2235567899999999


Q ss_pred             ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++++|+....-..+ ....+.+.-++|.++-..|+.++|...|++||..
T Consensus       141 k~D~AL~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         141 KADAALKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             hHHHHHHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            99999876552221 1234555669999999999999999999999864

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.37  E-value=0.0051  Score=55.60  Aligned_cols=84  Identities=13%  Similarity=-0.010  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccC--CChHHHHHHHHHHhccCChHHHHHHHhcCcc----cccCcchHHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALT--NDPADVYMQAQALFLGRHYRRPFHLLNSSKI----VLRDLRFRYLAAKCL   82 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~--~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l----~~~~~~~~~l~a~c~   82 (136)
                      .-.+|.-+...++++.|+-+.++.....  |+...+..+...+...|++++|..+++....    ...+...+..+-.+|
T Consensus       510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay  589 (1060)
T PLN03218        510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC  589 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence            3444555555566666665555554332  4444555555555566666666555543210    112233444455555


Q ss_pred             HHccChhhhh
Q 032655           83 EELRSGTSVC   92 (136)
Q Consensus        83 ~~l~~~~ea~   92 (136)
                      .+.|++++|.
T Consensus       590 ~k~G~ldeA~  599 (1060)
T PLN03218        590 ANAGQVDRAK  599 (1060)
T ss_pred             HHCCCHHHHH
Confidence            5666666553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.37  E-value=0.014  Score=44.61  Aligned_cols=82  Identities=12%  Similarity=0.014  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC----ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc---chHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN----DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL---RFRYL   77 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~----~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~---~~~~l   77 (136)
                      .+.|-.-....++.|+|++|+-..+++....|    .+.....++.++|++|+|..|+..++.+- +.+.|+   -..|+
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            45677788899999999999999999999998    45689999999999999999999887753 344444   46899


Q ss_pred             HHHHHHHccC
Q 032655           78 AAKCLEELRS   87 (136)
Q Consensus        78 ~a~c~~~l~~   87 (136)
                      .|.+.+..=+
T Consensus       114 kgLs~~~~i~  123 (254)
T COG4105         114 KGLSYFFQID  123 (254)
T ss_pred             HHHHHhccCC
Confidence            9999765433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.00076  Score=53.14  Aligned_cols=125  Identities=10%  Similarity=-0.011  Sum_probs=96.6

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      +.|..-|.-+.|.+|+-.-.--..-+| +...+.++|.|||...+|..|..+.+.. .+.++-...++-.|+++++.+.+
T Consensus        15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~   94 (459)
T KOG4340|consen   15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY   94 (459)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence            345555667899999988777777778 7778999999999999999999988664 33566777889999999999999


Q ss_pred             hhhhhh---------h---------hh-h-----------hcccc--hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           89 TSVCRC---------S---------VM-L-----------RLLKM--ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        89 ~ea~~~---------~---------~~-~-----------~~~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+|+..         .         .+ +           +++.|  ..+......|.+.-+-|+++.|++-|..|+.+
T Consensus        95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv  173 (459)
T KOG4340|consen   95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV  173 (459)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence            998521         0         00 0           11223  45666677899999999999999999999864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.34  E-value=0.0023  Score=55.01  Aligned_cols=82  Identities=9%  Similarity=-0.096  Sum_probs=62.1

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHHccC
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~l~~   87 (136)
                      -.+|.-+...|++++|.-..++.-  .|+...+..+...|..+|++++|+.+++...-  ...+...+.....+|.++|+
T Consensus       263 n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~  340 (697)
T PLN03081        263 CALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL  340 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            356778888899999988888763  23666788888999999999999998865321  23445567778888899999


Q ss_pred             hhhhhh
Q 032655           88 GTSVCR   93 (136)
Q Consensus        88 ~~ea~~   93 (136)
                      +++|.+
T Consensus       341 ~~~a~~  346 (697)
T PLN03081        341 LEHAKQ  346 (697)
T ss_pred             hHHHHH
Confidence            998854

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.34  E-value=0.0032  Score=48.51  Aligned_cols=131  Identities=12%  Similarity=-0.029  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC---ChH----HHHHHHHHHhccCChHHHHHHHhcCcc-------c
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN---DPA----DVYMQAQALFLGRHYRRPFHLLNSSKI-------V   68 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~~~----~~~~la~~l~~~g~~~~A~~~l~~~~l-------~   68 (136)
                      ++..+-+...-..+-..++|+.|.....++....-   ++.    .....|.|+.. +++.+|+.+++++.-       .
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~  110 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRF  110 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-H
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcH
Confidence            45566666777777788999999999988876652   222    23444555544 488888887765321       1


Q ss_pred             ccCcchHHHHHHHHHHc-cChhhhhhhhhh----h-hcccchHhHHHH-HHHHHHHHcCChHHHHHHHHHhhc
Q 032655           69 LRDLRFRYLAAKCLEEL-RSGTSVCRCSVM----L-RLLKMISSAICF-LRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        69 ~~~~~~~~l~a~c~~~l-~~~~ea~~~~~~----~-~~~~~~~a~i~~-l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ..-..+...+|..+.+. |++++|++....    . .++.+..+.-++ ..|.++-.+|++++|++.|.+..+
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            23345667777777777 888888764432    1 123344445455 559999999999999999998754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.34  E-value=0.0049  Score=48.03  Aligned_cols=126  Identities=12%  Similarity=-0.102  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHH--HHHHhccC--ChHHHHHHHhcCcc-cccCcchHHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQ--AQALFLGR--HYRRPFHLLNSSKI-VLRDLRFRYLAAKC   81 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~l--a~~l~~~g--~~~~A~~~l~~~~l-~~~~~~~~~l~a~c   81 (136)
                      +-+--.|+-++..++++-|.--.++.-..+++ .-+..+  |++-+..|  +++.|+.+++...- .+.++...+..|.|
T Consensus       132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~  210 (290)
T PF04733_consen  132 ELLALAVQILLKMNRPDLAEKELKNMQQIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC  210 (290)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            34445678888888888887777666554432 334444  33444445  58888887765322 23566777888889


Q ss_pred             HHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           82 LEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        82 ~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      +..+|+|+||.+.....+...|.......++..+...+|+..+++.-|..-|
T Consensus       211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            9999999998765443333334445566678888888888866666555433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.33  E-value=0.0016  Score=44.98  Aligned_cols=63  Identities=16%  Similarity=0.150  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      +..++-++.++..++..+.++.|+.++++++..+| +...+..+..+|...|++..|+...++.
T Consensus        59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            44566778888889999999999999999999999 6667888999999999999999887663

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03077 Protein ECB2; Provisional

Probab=97.32  E-value=0.0066  Score=53.33  Aligned_cols=123  Identities=13%  Similarity=-0.002  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccC--CChHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALT--NDPADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~--~~~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~   83 (136)
                      .-.+|.-+..+|+.+.|+-+.++.....  |+......+-.++...|.+++|.++++...   ....+...+......+.
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~  636 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG  636 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            4456667777777777777777766533  444444444456667777777777665432   12234455666777777


Q ss_pred             HccChhhhhhhh--------------------------------hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655           84 ELRSGTSVCRCS--------------------------------VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVS  131 (136)
Q Consensus        84 ~l~~~~ea~~~~--------------------------------~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~  131 (136)
                      +.|+++||.+-.                                ..-+.-.|..++.+.+++.+|...|+.++|.+..+.
T Consensus       637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~  716 (857)
T PLN03077        637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT  716 (857)
T ss_pred             hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence            777777774311                                000112245566677889999999999999887764

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.30  E-value=0.0062  Score=49.11  Aligned_cols=124  Identities=10%  Similarity=-0.096  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      .-+.+.+.++.|.+++|.-+-+..+--.-+++ +..+.-++ .-|+++.=++.+++. ..++.+|.....+|+-|++-|.
T Consensus       266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~  343 (400)
T COG3071         266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL  343 (400)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence            44677888888999999998888887776666 44443333 334555545544332 2245677889999999999999


Q ss_pred             hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |.+|.+.....++.- .++.-+..+|.++.++|..++|.+++.++|..
T Consensus       344 w~kA~~~leaAl~~~-~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         344 WGKASEALEAALKLR-PSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHHHhcC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999987665444322 25555678899999999999999999999854

>PLN03077 Protein ECB2; Provisional

Probab=97.24  E-value=0.006  Score=53.61  Aligned_cols=118  Identities=10%  Similarity=-0.142  Sum_probs=85.4

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHHccCh
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      .+|.-+...|+.++|....+..   .|+...|-.+...|...|+.++|+.++++-.-  ...+...+...-.+|.+.|..
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v  605 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV  605 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence            5678888899999999988886   66888899999999999999999999975321  223444445555678899999


Q ss_pred             hhhhhhhhhh--hcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655           89 TSVCRCSVML--RLLKMISSAICFLRGKAYEALGNCAQARLWLVS  131 (136)
Q Consensus        89 ~ea~~~~~~~--~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~  131 (136)
                      ++|.+....-  ..++.+....+..+..+|.+.|+.++|.+.+++
T Consensus       606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9997644321  113333444555667777777777777777765

>PRK11906 transcriptional regulator; Provisional

Probab=97.21  E-value=0.0048  Score=50.80  Aligned_cols=113  Identities=9%  Similarity=0.016  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHh---ccCC-ChHHHHHHHHHHhcc------C---ChHHHHHHHhc-CcccccCcchHHHHHHHHHHccCh
Q 032655           23 SSAIFFANEVA---ALTN-DPADVYMQAQALFLG------R---HYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        23 ~~Alf~aekl~---~~~~-~~~~~~~la~~l~~~------g---~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      +.|+-.+++++   +++| .....-.+|.|++..      .   .-..|..+.++ -.+++.++.+..+.|....-.+++
T Consensus       275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~  354 (458)
T PRK11906        275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA  354 (458)
T ss_pred             HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence            35666777777   5555 344566666666544      1   11223333322 234567777777777777777777


Q ss_pred             hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.|....+....-+|..+.+++..|.+.---|+.++|.++..+||++
T Consensus       355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            77665544444445667777777777777777777777777777654

>PRK11906 transcriptional regulator; Provisional

Probab=97.16  E-value=0.0058  Score=50.33  Aligned_cols=89  Identities=11%  Similarity=-0.030  Sum_probs=73.0

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~   97 (136)
                      ..-..|+-.|+|+++++| +|-..+.+|..+...|++..|...++++. +.+.....+|..|..++-.|+.++|.+....
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345679999999999999 89999999999999999999999997765 4778899999999999999999999875443


Q ss_pred             --hhcccchHhHH
Q 032655           98 --LRLLKMISSAI  108 (136)
Q Consensus        98 --~~~~~~~~a~i  108 (136)
                        .+++....++|
T Consensus       398 alrLsP~~~~~~~  410 (458)
T PRK11906        398 SLQLEPRRRKAVV  410 (458)
T ss_pred             HhccCchhhHHHH
Confidence              23333444443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.16  E-value=0.019  Score=47.68  Aligned_cols=118  Identities=12%  Similarity=0.035  Sum_probs=78.7

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      .+-.+++.+.|+-++=|+.++-- +.+-++.+|..|-...++.+|++++-. .++.+.+|...--+|.-|-+-|+-.+|-
T Consensus       533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf  612 (840)
T KOG2003|consen  533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF  612 (840)
T ss_pred             cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence            34456777778877777776664 667777778888888888888776633 3446677777777777776666666653


Q ss_pred             hh----------------------------------hhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           93 RC----------------------------------SVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        93 ~~----------------------------------~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      ..                                  .+..--.-|..+---+++..|+++.||+++|.+.|+..
T Consensus       613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            21                                  11100011333333346699999999999999999864

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.15  E-value=0.0035  Score=53.32  Aligned_cols=97  Identities=9%  Similarity=0.087  Sum_probs=79.7

Q ss_pred             CCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhh--hhhhhcccchHhHHHH-H
Q 032655           36 TNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRC--SVMLRLLKMISSAICF-L  111 (136)
Q Consensus        36 ~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~--~~~~~~~~~~~a~i~~-l  111 (136)
                      .|...+.|.-+.=.|-.+||+..+++++...- .+.|.+..-+.|.-+..+|+-+||.+.  .+...|   ..|.+|. .
T Consensus         4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv   80 (700)
T KOG1156|consen    4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHV   80 (700)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHH
Confidence            34455788888889999999998887765422 468999999999999999999999873  333333   6788866 8


Q ss_pred             HHHHHHHcCChHHHHHHHHHhhcc
Q 032655          112 RGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       112 ~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .|.+++....+.+|+.||+.||++
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~  104 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKI  104 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhc
Confidence            899999999999999999999975

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.13  E-value=0.0013  Score=56.48  Aligned_cols=95  Identities=13%  Similarity=-0.030  Sum_probs=76.4

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG  120 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~  120 (136)
                      -..+|...+.+++|.++...++.+ .+.+-.++.+|-+|-|..++++++.|.+..-..+..-|.....+.++...|-+++
T Consensus       488 ~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~  567 (777)
T KOG1128|consen  488 QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK  567 (777)
T ss_pred             HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh
Confidence            355566677788999998888553 4566778899999999999999999988766555555677888889999999999


Q ss_pred             ChHHHHHHHHHhhccC
Q 032655          121 NCAQARLWLVSCDEFT  136 (136)
Q Consensus       121 ~~~~A~~~y~~AL~~~  136 (136)
                      ...+|-.++++||+.+
T Consensus       568 ~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  568 KKKRAFRKLKEALKCN  583 (777)
T ss_pred             hhHHHHHHHHHHhhcC
Confidence            9999999999998853

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.12  E-value=0.0014  Score=50.43  Aligned_cols=91  Identities=14%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             HHHHHHhccCChHHHHHHHhcCc-cc-----c-cCcchHHHHHHHHHHccChhhhhhhhhh----hhc-ccchHhHH-HH
Q 032655           44 MQAQALFLGRHYRRPFHLLNSSK-IV-----L-RDLRFRYLAAKCLEELRSGTSVCRCSVM----LRL-LKMISSAI-CF  110 (136)
Q Consensus        44 ~la~~l~~~g~~~~A~~~l~~~~-l~-----~-~~~~~~~l~a~c~~~l~~~~ea~~~~~~----~~~-~~~~~a~i-~~  110 (136)
                      ..|.+|...|+|.+|.+...+.. ..     + ....++...|.|+.+. ++++|++....    ... +.+..++. +.
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~  118 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK  118 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            35788888899998888665532 11     1 1223445566666555 88888764432    222 44444444 44


Q ss_pred             HHHHHHHHc-CChHHHHHHHHHhhcc
Q 032655          111 LRGKAYEAL-GNCAQARLWLVSCDEF  135 (136)
Q Consensus       111 l~G~~~~~~-~~~~~A~~~y~~AL~~  135 (136)
                      .+|.+|+.. |++++|+++|++|+++
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            779999999 9999999999999864

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.11  E-value=0.0011  Score=54.44  Aligned_cols=53  Identities=13%  Similarity=0.141  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcc---hHHHHHHHHHHccChhhhh
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLR---FRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~---~~~l~a~c~~~l~~~~ea~   92 (136)
                      +.++.+|..|+..|+|++|+..+++. .+.+.+..   .+|.+|.|+..+|++++|+
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAl  132 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAA  132 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34555555555555555555555442 22333332   2555555555555555554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.11  E-value=0.0043  Score=43.53  Aligned_cols=93  Identities=15%  Similarity=0.027  Sum_probs=74.7

Q ss_pred             HHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhhhhhhhhc--cc--chHhHHHHHHHHHH
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL--LK--MISSAICFLRGKAY  116 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~--~~--~~~a~i~~l~G~~~  116 (136)
                      +=+.|..+.-.|+.+.|++.+.+ ..+.+..+..++..|+.+.-.|+-++|+|.....++  +-  ...-..+..+|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            55678889999999999998855 455778999999999999999999999987655332  22  23344566899999


Q ss_pred             HHcCChHHHHHHHHHhhc
Q 032655          117 EALGNCAQARLWLVSCDE  134 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~  134 (136)
                      +.+||-+.|..-|..|-.
T Consensus       126 Rl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             HHhCchHHHHHhHHHHHH
Confidence            999999999999987743

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.11  E-value=0.022  Score=46.06  Aligned_cols=128  Identities=11%  Similarity=-0.013  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc---Ccccc--------------
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS---SKIVL--------------   69 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~---~~l~~--------------   69 (136)
                      ..-...+.-+..++++.|.---+.++.+.| +|+-+-+..++|...|.|...+.++.+   .++..              
T Consensus       155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g  234 (400)
T COG3071         155 VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG  234 (400)
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence            344556777889999999999999999999 788888889999999999999887754   22111              


Q ss_pred             --------------------------cCcchHHHHHHHHHHccChhhhhhh----h--------h---------------
Q 032655           70 --------------------------RDLRFRYLAAKCLEELRSGTSVCRC----S--------V---------------   96 (136)
Q Consensus        70 --------------------------~~~~~~~l~a~c~~~l~~~~ea~~~----~--------~---------------   96 (136)
                                                .+|...--++.=+..+|.+++|.+.    .        .               
T Consensus       235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~  314 (400)
T COG3071         235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLI  314 (400)
T ss_pred             HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHH
Confidence                                      1466666777778888888888421    0        0               


Q ss_pred             hh----hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           97 ML----RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        97 ~~----~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..    ....|....+++-+|.+|.+.+...+|..+|+.||+.
T Consensus       315 k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~  357 (400)
T COG3071         315 KAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL  357 (400)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            00    1133556677888999999999999999999999874

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.10  E-value=0.0019  Score=51.82  Aligned_cols=92  Identities=13%  Similarity=0.070  Sum_probs=71.0

Q ss_pred             HHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhh-hh-hhhhcccchHhHHHHHHHHHHHH
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCR-CS-VMLRLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~-~~-~~~~~~~~~~a~i~~l~G~~~~~  118 (136)
                      +--.|.-||..|+|++|+.+..+ ..+.+.++-..-..|.+|+++++|..|+. +. ...+|..  ---.+--+|.+-..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARES  177 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHH
Confidence            44578899999999999998744 45566788888899999999999998864 22 2333311  11234577999999


Q ss_pred             cCChHHHHHHHHHhhcc
Q 032655          119 LGNCAQARLWLVSCDEF  135 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL~~  135 (136)
                      +|+.++|.+-|..+|++
T Consensus       178 Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  178 LGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HhhHHHHHHhHHHHHhh
Confidence            99999999999999875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.04  E-value=0.017  Score=42.85  Aligned_cols=112  Identities=14%  Similarity=0.031  Sum_probs=49.7

Q ss_pred             HHcCChhhHHHHHHHHhc-cCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHHHccChhhh
Q 032655           17 VSKHLYSSAIFFANEVAA-LTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~-~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      .+.|.+.+|.-..+..++ ++. ++.-+.-+|+..+-.+++..|...|++..   -..+++.-..++|+.+-.+|++.+|
T Consensus       100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A  179 (251)
T COG4700         100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA  179 (251)
T ss_pred             HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence            344555555544444332 121 33334445555555555555555444321   1124444455555555555555555


Q ss_pred             hhhhhhhhcccc-hHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655           92 CRCSVMLRLLKM-ISSAICFLRGKAYEALGNCAQARLWLV  130 (136)
Q Consensus        92 ~~~~~~~~~~~~-~~a~i~~l~G~~~~~~~~~~~A~~~y~  130 (136)
                      +...+...+-.| ..+.  ..-|...-++|+..+|..-|.
T Consensus       180 esafe~a~~~ypg~~ar--~~Y~e~La~qgr~~ea~aq~~  217 (251)
T COG4700         180 ESAFEVAISYYPGPQAR--IYYAEMLAKQGRLREANAQYV  217 (251)
T ss_pred             HHHHHHHHHhCCCHHHH--HHHHHHHHHhcchhHHHHHHH
Confidence            544444333222 1222  222444455555555544443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.03  E-value=0.0098  Score=42.55  Aligned_cols=86  Identities=14%  Similarity=0.054  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHH
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAK   80 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~   80 (136)
                      ++++.-|..++.-.+..+..+++.-.-+.+-.+.| .++--..-|+.+...|+|..|+.+++...- .+..+.|.-|+|.
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            67788899999999999999999999999999999 777788889999999999999999988543 3467788999999


Q ss_pred             HHHHccCh
Q 032655           81 CLEELRSG   88 (136)
Q Consensus        81 c~~~l~~~   88 (136)
                      |++.+|+.
T Consensus        87 CL~~~~D~   94 (160)
T PF09613_consen   87 CLYALGDP   94 (160)
T ss_pred             HHHHcCCh
Confidence            99999986

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.01  E-value=0.0051  Score=47.90  Aligned_cols=89  Identities=16%  Similarity=0.086  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      .+-.-+||.-......+.+|.++.+.+...+| +|.-..-+|.|+...|+|.+|..+++.. ..++.++......+-|..
T Consensus       167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~  246 (290)
T PF04733_consen  167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL  246 (290)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            33445677777777789999999999888776 7778888999999999999999988664 446788999999999999


Q ss_pred             HccChhhhhhh
Q 032655           84 ELRSGTSVCRC   94 (136)
Q Consensus        84 ~l~~~~ea~~~   94 (136)
                      -+|+..++.++
T Consensus       247 ~~gk~~~~~~~  257 (290)
T PF04733_consen  247 HLGKPTEAAER  257 (290)
T ss_dssp             HTT-TCHHHHH
T ss_pred             HhCCChhHHHH
Confidence            99999776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.017  Score=45.87  Aligned_cols=90  Identities=8%  Similarity=-0.017  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cc-cCcchHHHHHH
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VL-RDLRFRYLAAK   80 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~-~~~~~~~l~a~   80 (136)
                      ++-+-.=++.+.++-..+.+.|++|..|++..+| +...-..+|.+....|+|..|++.+++..- ++ --+...-.+..
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~  257 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE  257 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            3444455677888888999999999999999999 788889999999999999999998877531 11 23356778889


Q ss_pred             HHHHccChhhhhh
Q 032655           81 CLEELRSGTSVCR   93 (136)
Q Consensus        81 c~~~l~~~~ea~~   93 (136)
                      ||-++|+.++++.
T Consensus       258 ~Y~~lg~~~~~~~  270 (389)
T COG2956         258 CYAQLGKPAEGLN  270 (389)
T ss_pred             HHHHhCCHHHHHH
Confidence            9999999999865

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.97  E-value=0.011  Score=51.93  Aligned_cols=119  Identities=8%  Similarity=-0.120  Sum_probs=76.5

Q ss_pred             HHHcCChhhHHHHHHHHhccCC--Ch----HHHHHHHHHHhccCChHHHHHHHhcCcc-------cccCcchHHHHHHHH
Q 032655           16 CVSKHLYSSAIFFANEVAALTN--DP----ADVYMQAQALFLGRHYRRPFHLLNSSKI-------VLRDLRFRYLAAKCL   82 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~--~~----~~~~~la~~l~~~g~~~~A~~~l~~~~l-------~~~~~~~~~l~a~c~   82 (136)
                      +...++++.|.-++++++...|  ++    .....+|.++...|++.+|...+....-       ......+....|..+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            4567899999999999887655  21    1346678888899999988887755321       001123556678888


Q ss_pred             HHccChhhhhhhhhhhhc--------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           83 EELRSGTSVCRCSVMLRL--------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~~~~--------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ...|++++|.......++        ..+..+.+...+|.++...|+.++|...+.+++.
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~  601 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE  601 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence            999999998653221110        1122233344667777777777777777777664

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.95  E-value=0.0039  Score=38.26  Aligned_cols=52  Identities=10%  Similarity=-0.026  Sum_probs=26.0

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcCc-c-------cccCcchHHHHHHHHHHccChhhhhh
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSSK-I-------VLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~~-l-------~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      ...+|.+|+..|+|++|+..+++.. +       .+....+.+.+|.|+..+|++++|++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   67 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE   67 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4455666666666666655554321 0       00123455556666666666666554

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.003  Score=51.38  Aligned_cols=63  Identities=16%  Similarity=0.154  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           73 RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ...+|.+.|+..+|+|.+|.++..-.+-..+......+++|+++--.+|-+.|+..|.++|++
T Consensus       170 ~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l  232 (486)
T KOG0550|consen  170 KAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL  232 (486)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc
Confidence            445666777777777777665443222122345666789999999999999999999999975

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.90  E-value=0.014  Score=41.36  Aligned_cols=86  Identities=12%  Similarity=0.004  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccc-cCcchHHHHHH
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVL-RDLRFRYLAAK   80 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~-~~~~~~~l~a~   80 (136)
                      .+++.-|.+.++..+....++++.-.-+.+--+.| .++--..-|..+...|+|.+|+.++++-.-.. ..+.+.-|++.
T Consensus         7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~   86 (153)
T TIGR02561         7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL   86 (153)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence            46677788889999999999999999999999999 67767777999999999999999998865433 44789999999


Q ss_pred             HHHHccCh
Q 032655           81 CLEELRSG   88 (136)
Q Consensus        81 c~~~l~~~   88 (136)
                      |++.+|+.
T Consensus        87 CL~al~Dp   94 (153)
T TIGR02561        87 CLNAKGDA   94 (153)
T ss_pred             HHHhcCCh
Confidence            99999986

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.89  E-value=0.0051  Score=49.37  Aligned_cols=97  Identities=11%  Similarity=-0.023  Sum_probs=73.9

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                      +.+.-+-+|.-++..||+..|+..... ..+++.+....|-.|-.++.+|+-+-|+......+..-|...+.-..+|.++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence            344567788888888888888886644 4557778888888888888888888887665554444456666677888888


Q ss_pred             HHcCChHHHHHHHHHhhc
Q 032655          117 EALGNCAQARLWLVSCDE  134 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~  134 (136)
                      .++|..+.|..-|...|.
T Consensus       117 lK~Gele~A~~DF~~vl~  134 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQ  134 (504)
T ss_pred             hhcccHHHHHHHHHHHHh
Confidence            888888888888887775

>smart00028 TPR Tetratricopeptide repeats

Probab=96.89  E-value=0.0017  Score=31.57  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          107 AICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       107 ~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..++.+|.++..+|+++.|+.+|++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35678999999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.0064  Score=47.31  Aligned_cols=84  Identities=18%  Similarity=0.112  Sum_probs=70.4

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChH---HHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYR---RPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~---~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      +-++.++++.+|+-...+++-+.| +|+-+--+|.+++....-+   ++-.++++. .+++.+...++++|..+++.|+|
T Consensus       164 ~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~  243 (287)
T COG4235         164 RAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDY  243 (287)
T ss_pred             HHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence            457889999999999999999999 8888999999887766533   556677664 45789999999999999999999


Q ss_pred             hhhhhhhhh
Q 032655           89 TSVCRCSVM   97 (136)
Q Consensus        89 ~ea~~~~~~   97 (136)
                      ++|...-.+
T Consensus       244 ~~A~~~Wq~  252 (287)
T COG4235         244 AEAAAAWQM  252 (287)
T ss_pred             HHHHHHHHH
Confidence            999865443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.045  Score=44.32  Aligned_cols=85  Identities=13%  Similarity=0.050  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHH-HHcCChhhHHHHHHHHhccC-CChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHH
Q 032655            4 EEIEKLRGLVRDC-VSKHLYSSAIFFANEVAALT-NDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKC   81 (136)
Q Consensus         4 ~~~~~lr~~i~~~-l~~~~~~~Alf~aekl~~~~-~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c   81 (136)
                      +-.+.+..||-+| ...|+|+.|+-.-+-+-..+ |+.+-+..+|.|+|-.|+|.+|-.+-.+..   ++|.|.-|+-..
T Consensus        54 EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~---k~pL~~RLlfhl  130 (557)
T KOG3785|consen   54 EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP---KTPLCIRLLFHL  130 (557)
T ss_pred             hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC---CChHHHHHHHHH
Confidence            3346889999887 46799999998888777644 367779999999999999999999887764   677777777777


Q ss_pred             HHHccChhhh
Q 032655           82 LEELRSGTSV   91 (136)
Q Consensus        82 ~~~l~~~~ea   91 (136)
                      -.++++-++-
T Consensus       131 ahklndEk~~  140 (557)
T KOG3785|consen  131 AHKLNDEKRI  140 (557)
T ss_pred             HHHhCcHHHH
Confidence            7777776664

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.021  Score=43.93  Aligned_cols=115  Identities=13%  Similarity=0.057  Sum_probs=80.6

Q ss_pred             HcCChhhHHHHHHHHhccCCChHHHHH-HHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhh
Q 032655           18 SKHLYSSAIFFANEVAALTNDPADVYM-QAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCS   95 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~~~~~~~~-la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~   95 (136)
                      ..++|++|+-+-|.+++.+|.....+- .--.+--.|+-..|+.-+.+. ...+.+.+.+.=++..|+..|+|++|.=+.
T Consensus        98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl  177 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL  177 (289)
T ss_pred             HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            358999999999999999984443332 233455678878888766443 224578899999999999999999996544


Q ss_pred             hhhhcccch-------HhHHHHHHHHHHHHcCChHHHHHHHHHhhccC
Q 032655           96 VMLRLLKMI-------SSAICFLRGKAYEALGNCAQARLWLVSCDEFT  136 (136)
Q Consensus        96 ~~~~~~~~~-------~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~~  136 (136)
                      +.-+-..|.       -+.+.|-.|-    ..|.+-|.++|.+||+++
T Consensus       178 EE~ll~~P~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  178 EELLLIQPFNPLYFQRLAEVLYTQGG----AENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhC
Confidence            322212222       3444444443    578899999999999874

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.70  E-value=0.0011  Score=54.11  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=18.6

Q ss_pred             HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655          105 SSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +...|+.+|..|-++|+.++|..+-...|+
T Consensus       314 e~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  314 ELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            444566666666666666666666665554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.70  E-value=0.007  Score=52.36  Aligned_cols=114  Identities=9%  Similarity=-0.089  Sum_probs=81.2

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-c-cccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-I-VLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      -....+++.-|+++...| ||..+|+++.=|...++...|+..++.+. + ...++.++.++|.|.-..+++.+|++.-+
T Consensus       458 ~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd  537 (799)
T KOG4162|consen  458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD  537 (799)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            456788999999999999 99999999999999999999999886653 3 34789999999999999999999987544


Q ss_pred             hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           97 MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        97 ~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      ..+++.+..-..-..+-.+-...+++++|+.-...-|
T Consensus       538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L  574 (799)
T KOG4162|consen  538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL  574 (799)
T ss_pred             HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence            3332111111111122223345666666666554443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.68  E-value=0.029  Score=49.41  Aligned_cols=90  Identities=11%  Similarity=-0.013  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC-hHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCL   82 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~   82 (136)
                      +.+|--.=|++.++.++++.|+--+++++.-+|+ +-...+.|.++++.|.+.+|+.+|+.... -..+....=.+-.|+
T Consensus         8 ~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y   87 (932)
T KOG2053|consen    8 MSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVY   87 (932)
T ss_pred             cHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHH
Confidence            4566666799999999999999999999999995 55799999999999999999999977544 234566677888999


Q ss_pred             HHccChhhhhhh
Q 032655           83 EELRSGTSVCRC   94 (136)
Q Consensus        83 ~~l~~~~ea~~~   94 (136)
                      .++|+++++...
T Consensus        88 ~d~~~~d~~~~~   99 (932)
T KOG2053|consen   88 RDLGKLDEAVHL   99 (932)
T ss_pred             HHHhhhhHHHHH
Confidence            999999999754

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.67  E-value=0.028  Score=46.58  Aligned_cols=113  Identities=9%  Similarity=-0.032  Sum_probs=82.1

Q ss_pred             ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-----cccCcchHHHHHHHHHHccChhhhhhh
Q 032655           21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-----VLRDLRFRYLAAKCLEELRSGTSVCRC   94 (136)
Q Consensus        21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-----~~~~~~~~~l~a~c~~~l~~~~ea~~~   94 (136)
                      ..+.|.-.-+......| ++--.+..|..+...|+.++|+..+++.-.     ...+.-|.+=+|-|+.-+.+|++|.+.
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            33445555555556667 455677789999999999999999985331     223557899999999999999999876


Q ss_pred             hhhhhcccch-HhHHHHHHHHHHHHcCCh-------HHHHHHHHHhh
Q 032655           95 SVMLRLLKMI-SSAICFLRGKAYEALGNC-------AQARLWLVSCD  133 (136)
Q Consensus        95 ~~~~~~~~~~-~a~i~~l~G~~~~~~~~~-------~~A~~~y~~AL  133 (136)
                      ...-.+.++- .+--.|+.|.|+..+|+.       ++|.+.|+++=
T Consensus       328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            5543333333 333345889999999999       88888888763

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.64  E-value=0.044  Score=44.30  Aligned_cols=98  Identities=14%  Similarity=0.076  Sum_probs=75.0

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCcc-----cccCcchHHHHHHHHHH---ccChhhhhhhhhhhh-cccchHhHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI-----VLRDLRFRYLAAKCLEE---LRSGTSVCRCSVMLR-LLKMISSAI  108 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-----~~~~~~~~~l~a~c~~~---l~~~~ea~~~~~~~~-~~~~~~a~i  108 (136)
                      +++-+..+=.+|-...+|+.=+.+.+...-     ...++...+++|.++.+   -|+.++|++.....+ ...+..+.+
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            456688888889999999988887766432     22577789999999999   999999988765422 233457778


Q ss_pred             HHHHHHHHHHc---------CChHHHHHHHHHhhcc
Q 032655          109 CFLRGKAYEAL---------GNCAQARLWLVSCDEF  135 (136)
Q Consensus       109 ~~l~G~~~~~~---------~~~~~A~~~y~~AL~~  135 (136)
                      +.+.|.+|+.+         +..++|+++|+++.++
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~  255 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI  255 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence            99999999653         3578999999998764

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.0066  Score=46.36  Aligned_cols=93  Identities=12%  Similarity=0.099  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC-hHHHHHHHHHHhccCChHHHHH-HHhcCcccccCcchHHHHHHH
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFH-LLNSSKIVLRDLRFRYLAAKC   81 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~~~~~~la~~l~~~g~~~~A~~-~l~~~~l~~~~~~~~~l~a~c   81 (136)
                      ++.+|+..--..|...-.|..|+-.--|++.++|. +.-+-.-|.|++...+|+.+.+ ..+...+++......|.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            34444444444444455555555555555555552 2334444555555555555544 333334444555555555666


Q ss_pred             HHHccChhhhhhhhh
Q 032655           82 LEELRSGTSVCRCSV   96 (136)
Q Consensus        82 ~~~l~~~~ea~~~~~   96 (136)
                      ....+.|.+|+....
T Consensus        88 ~l~s~~~~eaI~~Lq  102 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQ  102 (284)
T ss_pred             HHhhccccHHHHHHH
Confidence            666555555554443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.62  E-value=0.0068  Score=33.54  Aligned_cols=37  Identities=24%  Similarity=0.107  Sum_probs=22.1

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHH
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQ   47 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~   47 (136)
                      .+.+-+...|+++.|+-+.++++..+| +++.+..+|.
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            344555666666666666666666666 5555555553

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.61  E-value=0.13  Score=38.36  Aligned_cols=117  Identities=16%  Similarity=0.018  Sum_probs=91.3

Q ss_pred             cCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc--ccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK--IVLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~--l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      .-+++.++-=+.+-++..|...+-+-+|..+...|+|++|....+.+.  +.-.++....-+|+..+.++++.+|....+
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe  148 (251)
T COG4700          69 KLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE  148 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            345777888888889999988999999999999999999999886643  233566777888999999999999976554


Q ss_pred             hhhcccc--hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           97 MLRLLKM--ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        97 ~~~~~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .-..-+|  -...-.++.|+.+-.+|+++.|...|+.|+..
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence            3221111  12334578899999999999999999988753

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.57  E-value=0.026  Score=47.46  Aligned_cols=86  Identities=13%  Similarity=0.018  Sum_probs=51.5

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh--hhcccchHhHHHHHHHHHHHH
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM--LRLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~--~~~~~~~~a~i~~l~G~~~~~  118 (136)
                      +|++|++|-..|++.+|+++++++ ...|..++.+++.|+++-..|++++|.+..+.  .+|.  ..--+.-.-.+-+.+
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence            366677777777777777777543 33556677777777777777777777664432  2331  011111222555556


Q ss_pred             cCChHHHHHHH
Q 032655          119 LGNCAQARLWL  129 (136)
Q Consensus       119 ~~~~~~A~~~y  129 (136)
                      -|+.++|.+-.
T Consensus       275 a~~~e~A~~~~  285 (517)
T PF12569_consen  275 AGRIEEAEKTA  285 (517)
T ss_pred             CCCHHHHHHHH
Confidence            67777776544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.54  E-value=0.0023  Score=35.47  Aligned_cols=42  Identities=19%  Similarity=0.004  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK   80 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~   80 (136)
                      |+.++.+|..|...|++++|..++++. ...+.++..+..+|+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            567888999999999999999988665 336677777777665

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.50  E-value=0.14  Score=34.68  Aligned_cols=125  Identities=16%  Similarity=-0.020  Sum_probs=66.0

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhc--cCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHH-HHHH
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAA--LTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAK-CLEE   84 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~--~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~-c~~~   84 (136)
                      ..........+.+..++...+....  ..+ .....+..+......+++..++..+.+... ...........+. ++..
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (291)
T COG0457          63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE  142 (291)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence            3444555556666667666666665  334 444566667777777777777776655432 1222334444555 6777


Q ss_pred             ccChhhhhhhhhhhhcccc---hHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           85 LRSGTSVCRCSVMLRLLKM---ISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        85 l~~~~ea~~~~~~~~~~~~---~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .|+++++.+.....+...+   ..+...+..+..+...++++.|+..+.++++
T Consensus       143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            7777776543332111111   2233333444445555555555555555544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.48  E-value=0.0076  Score=49.46  Aligned_cols=95  Identities=11%  Similarity=0.072  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhcCcccc-------cCcchHHHHHHHHHHccChhhhhhhhhh------hhcccchHhH
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNSSKIVL-------RDLRFRYLAAKCLEELRSGTSVCRCSVM------LRLLKMISSA  107 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~~~l~~-------~~~~~~~l~a~c~~~l~~~~ea~~~~~~------~~~~~~~~a~  107 (136)
                      ..-.+|..||..|+|+.|++.=+....+.       ..-.+.-.+|.|+.-+|+++.|.+....      ++.+..+++.
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            46778999999999999998654322111       1224556789999999999999875432      2324467999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          108 ICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       108 i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .||.+|..|--+..+++|+.++.+=|+|
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.38  E-value=0.051  Score=47.71  Aligned_cols=120  Identities=13%  Similarity=0.031  Sum_probs=84.9

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC---Ch----HHHHHHHHHHhccCChHHHHHHHhcCcc-cc-----c---CcchHHHH
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN---DP----ADVYMQAQALFLGRHYRRPFHLLNSSKI-VL-----R---DLRFRYLA   78 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~---~~----~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~-----~---~~~~~~l~   78 (136)
                      .....|+++.|.-+.++++....   ++    .....+|.+++..|++.+|...++...- ..     .   ........
T Consensus       500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  579 (903)
T PRK04841        500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR  579 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            34568999999999999987753   21    2356679999999999999887755321 01     1   11234577


Q ss_pred             HHHHHHccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           79 AKCLEELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        79 a~c~~~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |..+...|++++|.........     +.......+..+|.++...|+.+.|...+.+++.
T Consensus       580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8899999999999764332111     1122344455789999999999999999998865

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.36  E-value=0.0073  Score=32.24  Aligned_cols=30  Identities=23%  Similarity=0.141  Sum_probs=25.1

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          106 SAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +..+..+|.+|..+|++++|..++++++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            345668999999999999999999999864

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.073  Score=43.18  Aligned_cols=85  Identities=9%  Similarity=0.009  Sum_probs=67.5

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-----ChHH-----------HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHH
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-----DPAD-----------VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRY   76 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-----~~~~-----------~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~   76 (136)
                      -.+...++|..|+---+|++..-+     +++.           ...+|-|+...+.|..|+..+.+. ...+.|....|
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy  295 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY  295 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence            356677999999999888775542     2221           456899999999999999988665 34778999999


Q ss_pred             HHHHHHHHccChhhhhhhhhhh
Q 032655           77 LAAKCLEELRSGTSVCRCSVML   98 (136)
Q Consensus        77 l~a~c~~~l~~~~ea~~~~~~~   98 (136)
                      =.|+|+..+++|+.|.+...+.
T Consensus       296 RrG~A~l~~~e~~~A~~df~ka  317 (397)
T KOG0543|consen  296 RRGQALLALGEYDLARDDFQKA  317 (397)
T ss_pred             HHHHHHHhhccHHHHHHHHHHH
Confidence            9999999999999998866543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.12  E-value=0.0085  Score=32.64  Aligned_cols=30  Identities=20%  Similarity=-0.039  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          106 SAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |.++.++|.+....+|++.|++-|++||++
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            346778999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.09  E-value=0.0082  Score=30.74  Aligned_cols=27  Identities=15%  Similarity=0.282  Sum_probs=21.5

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      |+.++.+|.+++..|+|.+|+..+++.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~a   27 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKA   27 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            466888999999999999999888654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.024  Score=43.35  Aligned_cols=97  Identities=12%  Similarity=0.028  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE  117 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~  117 (136)
                      .+-+=-.|.++|....|..|+..+.++ -+.+..+...-..|.|++++++|+.+...-...++-+|...-.+|-+|....
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            344556789999999999999977443 4455666777789999999999999876443333333445556789999999


Q ss_pred             HcCChHHHHHHHHHhhcc
Q 032655          118 ALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       118 ~~~~~~~A~~~y~~AL~~  135 (136)
                      .+.++.+|+.++++|..+
T Consensus        90 ~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   90 QSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             hhccccHHHHHHHHHHHH
Confidence            999999999999999653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.00  E-value=0.076  Score=36.42  Aligned_cols=108  Identities=20%  Similarity=0.027  Sum_probs=59.9

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-C-hHHHHHHHHHHhccCChHHH-HHHHhcCcccccCcchHHHHHHHHHHccChh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-D-PADVYMQAQALFLGRHYRRP-FHLLNSSKIVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~-~~~~~~la~~l~~~g~~~~A-~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      .......+..+.++-..++++.+.. + ..++..        ..|-.. ...+++     ....+.--++..+...|+++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~-----~~~~~~~~l~~~~~~~~~~~   79 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRE-----LYLDALERLAEALLEAGDYE   79 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHH-----HHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCHH
Confidence            3344667899999999999998873 1 001000        111111 111221     22345556666777777777


Q ss_pred             hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      +|+.....-+...|....++..+-++|..+|++.+|+..|.+.-
T Consensus        80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            77765544443445566666777777777788877777777653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.32  Score=38.15  Aligned_cols=113  Identities=9%  Similarity=0.006  Sum_probs=57.4

Q ss_pred             HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhh-
Q 032655           18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCS-   95 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~-   95 (136)
                      ..+++.+|.-..+-++...| +.+....+|.||...|+.+.|..+|......-......-+.++    +.-.++|.+.. 
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~----i~ll~qaa~~~~  221 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ----IELLEQAAATPE  221 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH----HHHHHHHhcCCC
Confidence            34566666666666666665 5555666666666666666666666554321111111111110    01111111100 


Q ss_pred             ----hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           96 ----VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        96 ----~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                          ....+..|..-.+-+-+++.+-..|+++.|.+.+-.-|+
T Consensus       222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                001123344555667788888888888888877655543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.019  Score=45.45  Aligned_cols=100  Identities=14%  Similarity=0.006  Sum_probs=70.2

Q ss_pred             HHhccCC---ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhh-hhh--------
Q 032655           31 EVAALTN---DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRC-SVM--------   97 (136)
Q Consensus        31 kl~~~~~---~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~-~~~--------   97 (136)
                      -++..-|   +.+.....|..+|..|||+.|++-++.+. ...-.+...|..|.|++.-|+|..|++. +++        
T Consensus       133 sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~H  212 (459)
T KOG4340|consen  133 SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQH  212 (459)
T ss_pred             HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcC
Confidence            3444445   23457778999999999999998775543 2346788899999999999999999752 111        


Q ss_pred             -h------h---c----ccc---hHhH---HHHHHHHHHHHcCChHHHHHHHH
Q 032655           98 -L------R---L----LKM---ISSA---ICFLRGKAYEALGNCAQARLWLV  130 (136)
Q Consensus        98 -~------~---~----~~~---~~a~---i~~l~G~~~~~~~~~~~A~~~y~  130 (136)
                       +      .   |    +++   ..|+   .+.|+.-|+-..+|++.|.+...
T Consensus       213 PElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  213 PELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             CccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence             0      0   1    221   1222   35588999999999999988764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.97  E-value=0.01  Score=30.13  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655          108 ICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       108 i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +.+.+|.+|.++|+.++|+..|++.++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            457889999999999999999998775

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.87  E-value=0.16  Score=35.06  Aligned_cols=64  Identities=19%  Similarity=0.015  Sum_probs=43.3

Q ss_pred             CcchHHHHHHHHHHccChhhhhhhhhh---hhc---c-c----chHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           71 DLRFRYLAAKCLEELRSGTSVCRCSVM---LRL---L-K----MISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        71 ~~~~~~l~a~c~~~l~~~~ea~~~~~~---~~~---~-~----~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +..|.--++.++..+|+|+|++...+.   +++   + .    +.=-++-+.+|..++.+|+.++|...|++|-+
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            345777788889999999998754322   221   1 1    11122346899999999999999999999854

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.86  E-value=0.061  Score=41.21  Aligned_cols=81  Identities=7%  Similarity=0.001  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCc----ccccCcchHHHHHHHHHHccChhhhhhhhhhhh---cccchHhHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSK----IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR---LLKMISSAICF  110 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~----l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~---~~~~~~a~i~~  110 (136)
                      +++-+|.-|+.-.+.|+|.+|...+++..    ..+-........+.++++.++|++|+...+..+   ...|...-+.|
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            35569999999999999999999876633    233345788999999999999999987665443   24567778889


Q ss_pred             HHHHHHHH
Q 032655          111 LRGKAYEA  118 (136)
Q Consensus       111 l~G~~~~~  118 (136)
                      ++|.++-.
T Consensus       113 lkgLs~~~  120 (254)
T COG4105         113 LKGLSYFF  120 (254)
T ss_pred             HHHHHHhc
Confidence            99999643

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.049  Score=42.02  Aligned_cols=94  Identities=17%  Similarity=0.046  Sum_probs=69.2

Q ss_pred             HHHHHHHHhccCChHHHHHHHhc-------Ccc------------cccCcchHHHHHHHHHHccChhhhhhhhhhhhccc
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNS-------SKI------------VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLK  102 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~-------~~l------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~  102 (136)
                      +..-|+-+|..|+|++|....+.       ..+            +.....-...+.+|++..|+|-|+++.....+...
T Consensus       181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~  260 (329)
T KOG0545|consen  181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH  260 (329)
T ss_pred             HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence            66679999999998887654433       211            11233457889999999999999988544333223


Q ss_pred             chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          103 MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |..--++|.+|+++-.-=|..+|..-|+++|++
T Consensus       261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            344456789999999999999999999999875

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.75  E-value=0.36  Score=32.58  Aligned_cols=116  Identities=16%  Similarity=0.000  Sum_probs=87.0

Q ss_pred             cCChhhHHHHHHHHhccCCC---hHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHHHccChhhhh
Q 032655           19 KHLYSSAIFFANEVAALTND---PADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~~---~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      .+.+..+.......+...+.   .......+..+...|.+..+........   .........+..+......+++.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            46777788888888877774   5788999999999999999988776543   33456677888999999999999988


Q ss_pred             hhhhhhhcccchHhHHHHHHHH-HHHHcCChHHHHHHHHHhhc
Q 032655           93 RCSVMLRLLKMISSAICFLRGK-AYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        93 ~~~~~~~~~~~~~a~i~~l~G~-~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +.........+.........+. ++...|+++.|..+|.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  158 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE  158 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7655433211111233344555 99999999999999999865

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.71  E-value=0.059  Score=40.24  Aligned_cols=31  Identities=23%  Similarity=0.428  Sum_probs=27.7

Q ss_pred             hHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655          104 ISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       104 ~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ....+.||+|.++.++|++++|+.||.+.+.
T Consensus       163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            3677889999999999999999999998764

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=95.63  E-value=0.073  Score=46.11  Aligned_cols=119  Identities=14%  Similarity=-0.015  Sum_probs=87.9

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChh
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      |.+..-.+..|...+|+-.+||+...       --...||...|+.+.|-.++....-.+..+.-+.++|...-+..-|+
T Consensus       402 ~~laell~slGitksAl~I~Erlemw-------~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE  474 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLEMW-------DPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE  474 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHHHH-------HHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence            34556667789999999999987654       44577999999988887766442213466667778888877777777


Q ss_pred             hhhhhh----------------------------hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           90 SVCRCS----------------------------VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        90 ea~~~~----------------------------~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .|.+.+                            ...+..+|..-..+|-+|.+..++++.+.|+.+|..++.+
T Consensus       475 kawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL  548 (777)
T KOG1128|consen  475 KAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL  548 (777)
T ss_pred             HHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence            774311                            0011234677788999999999999999999999998754

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=95.35  E-value=0.33  Score=42.15  Aligned_cols=122  Identities=9%  Similarity=-0.091  Sum_probs=83.4

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHh-ccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhh
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALF-LGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~-~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      +.|.....++-|.-...+++..+|...++++-+.-+- .-|.-+.-..+|+++-. .++.+..+.+++......|+.-+|
T Consensus       524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~a  603 (913)
T KOG0495|consen  524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAA  603 (913)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHH
Confidence            4567778889999999999999997776665554333 33444444456666533 567788899999999999999887


Q ss_pred             hhhhhh------------------h-----hc----------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           92 CRCSVM------------------L-----RL----------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        92 ~~~~~~------------------~-----~~----------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ......                  +     ++          .......+++--...-.-+||.++|.....+||+.
T Consensus       604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~  680 (913)
T KOG0495|consen  604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS  680 (913)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence            432100                  0     00          11223445555567778899999999999999975

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.14  E-value=0.14  Score=32.93  Aligned_cols=57  Identities=5%  Similarity=-0.226  Sum_probs=41.1

Q ss_pred             HHHHHHccChhhhhhhhhhhhc----cc--c---hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           79 AKCLEELRSGTSVCRCSVMLRL----LK--M---ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        79 a~c~~~l~~~~ea~~~~~~~~~----~~--~---~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      -.-....|+|.+|.+.....+|    ..  +   .-....+.+|.++...|++++|+..+++|+++
T Consensus         5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3445678899998876554333    11  1   23344567899999999999999999999875

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.07  E-value=0.036  Score=40.51  Aligned_cols=69  Identities=13%  Similarity=0.056  Sum_probs=44.7

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHH---HHHHHhc--------CcccccCcchHHHHHHHHHHccC
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRR---PFHLLNS--------SKIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~---A~~~l~~--------~~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      -.|+.|.--++..+..+| ++++++.-|.+|....|++.   +..+++.        ..++|.....++..|.++..++.
T Consensus         5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            347788888999999999 88888888888877766643   4344432        12345555677777777777765


Q ss_pred             h
Q 032655           88 G   88 (136)
Q Consensus        88 ~   88 (136)
                      .
T Consensus        85 l   85 (186)
T PF06552_consen   85 L   85 (186)
T ss_dssp             H
T ss_pred             h
Confidence            3

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.99  E-value=0.064  Score=47.33  Aligned_cols=85  Identities=16%  Similarity=0.117  Sum_probs=58.7

Q ss_pred             hccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHH
Q 032655           50 FLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLW  128 (136)
Q Consensus        50 ~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~  128 (136)
                      ...+||+.|+..+.+-.- .++.+-++-+.|..++++|+++||....+..-..-+......--+--+|+.+|..++|+.+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            345888988876544211 3466778889999999999999998544321111111222233557899999999999999


Q ss_pred             HHHhhc
Q 032655          129 LVSCDE  134 (136)
Q Consensus       129 y~~AL~  134 (136)
                      |..++.
T Consensus       100 Ye~~~~  105 (932)
T KOG2053|consen  100 YERANQ  105 (932)
T ss_pred             HHHHHh
Confidence            999864

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.95  E-value=0.037  Score=28.39  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcC
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      +.++.+|.+++..|+|..|+..+++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~a   27 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRA   27 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            45677778888888888877777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.90  E-value=0.78  Score=38.53  Aligned_cols=91  Identities=20%  Similarity=0.111  Sum_probs=48.5

Q ss_pred             HHHHHhccCChHHHHHHHhcC-cc--cccCcchHHHHHHHHHHccChhhhhhhhhhhhc-ccchHhHHHHHHHHHH-HHc
Q 032655           45 QAQALFLGRHYRRPFHLLNSS-KI--VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL-LKMISSAICFLRGKAY-EAL  119 (136)
Q Consensus        45 la~~l~~~g~~~~A~~~l~~~-~l--~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~-~~~~~a~i~~l~G~~~-~~~  119 (136)
                      +|.|.-..|+.++|++..+.. +.  ...+...++++-.|+.+++.|.|+..-..++-| ..|..+++||-...+- ++-
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav  344 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV  344 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence            556666666666665544332 11  113445666666666666666665444433322 2367888888554432 212


Q ss_pred             CC---------------hHHHHHHHHHhhcc
Q 032655          120 GN---------------CAQARLWLVSCDEF  135 (136)
Q Consensus       120 ~~---------------~~~A~~~y~~AL~~  135 (136)
                      +.               -..|++...+|.++
T Consensus       345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvef  375 (539)
T PF04184_consen  345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEF  375 (539)
T ss_pred             ccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence            21               13467777777654

The molecular function of this protein is uncertain.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.86  E-value=0.11  Score=43.71  Aligned_cols=98  Identities=14%  Similarity=0.002  Sum_probs=69.9

Q ss_pred             CChHHHHHHHHHHhccCChHHHHHHHhcCccccc--------Ccc--hHHHHHHHHHHccChhhhhhh-------h--hh
Q 032655           37 NDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLR--------DLR--FRYLAAKCLEELRSGTSVCRC-------S--VM   97 (136)
Q Consensus        37 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~--------~~~--~~~l~a~c~~~l~~~~ea~~~-------~--~~   97 (136)
                      +++...++.++-.|..|+|..|.++|-..++...        ...  +++.+|-.+++++.|.-+.--       .  ..
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            3788999999999999999999998866554211        112  345777788888888775321       1  11


Q ss_pred             h--hccc-------chHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           98 L--RLLK-------MISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        98 ~--~~~~-------~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .  +.+.       .-.-.|.|+.|..|...|+.-.|.+||.+|..
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            0  1111       11345788999999999999999999999875

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.69  E-value=0.093  Score=44.13  Aligned_cols=77  Identities=12%  Similarity=-0.000  Sum_probs=59.1

Q ss_pred             CChhhHHHHHHHHhcc--CC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           20 HLYSSAIFFANEVAAL--TN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~--~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      .+...|.-.++++.++  .| +|....-+|......|++.+|...++++--...+...++++|+++...|++++|++...
T Consensus       398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4567778888887775  44 55555557888888999999999997754323367789999999999999999987543

>PRK10941 hypothetical protein; Provisional

Probab=94.68  E-value=0.24  Score=38.31  Aligned_cols=71  Identities=10%  Similarity=-0.032  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLA   78 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~   78 (136)
                      -++.+-.-+++.++++.|+-.+|+++.+.| +|..+-.-|..|++.|.++.|..=++.+- ..+..+..-.+.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            356677778999999999999999999999 88889999999999999999988665542 133455444433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.36  E-value=0.34  Score=39.10  Aligned_cols=80  Identities=10%  Similarity=-0.070  Sum_probs=63.9

Q ss_pred             HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc--ccc---CcchHHHHHHHHHHccChhh
Q 032655           17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLR---DLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~---~~~~~~l~a~c~~~l~~~~e   90 (136)
                      ++.|-|++|.-.|+|++.++| +.=..+-++.++-++|+++++.+...+..-  ...   ...-+--.|.|+.+-++|+.
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~  265 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK  265 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence            346899999999999999999 555889999999999999999998876542  111   11234567999999999999


Q ss_pred             hhhhhh
Q 032655           91 VCRCSV   96 (136)
Q Consensus        91 a~~~~~   96 (136)
                      |++..+
T Consensus       266 aleIyD  271 (491)
T KOG2610|consen  266 ALEIYD  271 (491)
T ss_pred             HHHHHH
Confidence            987554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.33  E-value=0.21  Score=39.93  Aligned_cols=87  Identities=22%  Similarity=0.198  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccC-CChH--HH--HHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALT-NDPA--DV--YMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAK   80 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~-~~~~--~~--~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~   80 (136)
                      +..+.-=-.|...-.|..|+....+.+... |+|+  .+  ..-|-|.+..|+|.+|+.=+ +...+.+.|..|++=-|.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            333444444556667999998888877655 4443  33  33578999999999999854 555668899999999999


Q ss_pred             HHHHccChhhhhh
Q 032655           81 CLEELRSGTSVCR   93 (136)
Q Consensus        81 c~~~l~~~~ea~~   93 (136)
                      |+++|+++.+|.+
T Consensus       162 c~~eLe~~~~a~n  174 (390)
T KOG0551|consen  162 CLLELERFAEAVN  174 (390)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999864

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.29  E-value=0.27  Score=33.12  Aligned_cols=91  Identities=13%  Similarity=0.008  Sum_probs=51.3

Q ss_pred             HHHHhccCChHHHHHHHhcCcc-cccCc---chHHHHHHHHHHccChhh-----------hhhhhhhhhcccchHhHHHH
Q 032655           46 AQALFLGRHYRRPFHLLNSSKI-VLRDL---RFRYLAAKCLEELRSGTS-----------VCRCSVMLRLLKMISSAICF  110 (136)
Q Consensus        46 a~~l~~~g~~~~A~~~l~~~~l-~~~~~---~~~~l~a~c~~~l~~~~e-----------a~~~~~~~~~~~~~~a~i~~  110 (136)
                      |.-++..|++-+|+++++..-+ ...+.   ....+.|..++++..--|           +++.......-.|..+...|
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            4556677777777776655332 11222   345556666655544433           11111111112355566677


Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhccC
Q 032655          111 LRGKAYEALGNCAQARLWLVSCDEFT  136 (136)
Q Consensus       111 l~G~~~~~~~~~~~A~~~y~~AL~~~  136 (136)
                      .+|.=+...--+++++.-=+++|.+|
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            78887777777778887777777764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.91  E-value=0.051  Score=27.35  Aligned_cols=24  Identities=13%  Similarity=0.286  Sum_probs=17.6

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhc
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNS   64 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~   64 (136)
                      ..|.+|.|++..|++.+|...++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~   25 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQR   25 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHH
Confidence            467777777777777777776655

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.68  E-value=0.06  Score=28.23  Aligned_cols=24  Identities=13%  Similarity=0.008  Sum_probs=11.6

Q ss_pred             chHhHHHHHHHHHHHHcCChHHHH
Q 032655          103 MISSAICFLRGKAYEALGNCAQAR  126 (136)
Q Consensus       103 ~~~a~i~~l~G~~~~~~~~~~~A~  126 (136)
                      |..+..++.+|.+|...|+.++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            334444445555555555555443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.50  E-value=0.18  Score=41.63  Aligned_cols=77  Identities=14%  Similarity=0.111  Sum_probs=61.3

Q ss_pred             HHHcCChhhHHHHHHHHhccC-C---ChHHHHH--------HHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHH
Q 032655           16 CVSKHLYSSAIFFANEVAALT-N---DPADVYM--------QAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCL   82 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~-~---~~~~~~~--------la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~   82 (136)
                      ....++|.+|+-+++|..++. |   +++|++-        +..||.+.++++-|+... ++..+++.++.-..-.|-|.
T Consensus       193 a~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavf  272 (569)
T PF15015_consen  193 AVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVF  272 (569)
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHH
Confidence            344588999999999988776 3   5666554        567999999999998855 66566777777777789999


Q ss_pred             HHccChhhhh
Q 032655           83 EELRSGTSVC   92 (136)
Q Consensus        83 ~~l~~~~ea~   92 (136)
                      ..+.+|.||.
T Consensus       273 R~LeRy~eAa  282 (569)
T PF15015_consen  273 RRLERYSEAA  282 (569)
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.45  E-value=1.1  Score=40.05  Aligned_cols=130  Identities=15%  Similarity=0.111  Sum_probs=72.8

Q ss_pred             ChHHHHHHHHHHHHHHHH------cCChhhHHHHHHHHhccCC-C-hHHHHHHHHHHhccCChHHHHHHHhcCcccc---
Q 032655            1 MREEEIEKLRGLVRDCVS------KHLYSSAIFFANEVAALTN-D-PADVYMQAQALFLGRHYRRPFHLLNSSKIVL---   69 (136)
Q Consensus         1 ~~~~~~~~lr~~i~~~l~------~~~~~~Alf~aekl~~~~~-~-~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~---   69 (136)
                      |.|+..+-.|..-++-+-      +|.|++|+-.||.   .+- . ....|.+|+-+-..++.++|+++.++.+...   
T Consensus       815 MlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~---~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev  891 (1416)
T KOG3617|consen  815 MLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAET---KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV  891 (1416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhh---ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence            345555555555444443      3555555555442   111 2 2357778888888899999999888765311   


Q ss_pred             -----cCcch-------------HHHHHHHHHHccChhhhhhhhhhh---------------hc------ccchHhHHHH
Q 032655           70 -----RDLRF-------------RYLAAKCLEELRSGTSVCRCSVML---------------RL------LKMISSAICF  110 (136)
Q Consensus        70 -----~~~~~-------------~~l~a~c~~~l~~~~ea~~~~~~~---------------~~------~~~~~a~i~~  110 (136)
                           .+|..             +---|+=+.-.|+-+-|+......               .+      .-.-.-+.||
T Consensus       892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcY  971 (1416)
T KOG3617|consen  892 FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACY  971 (1416)
T ss_pred             HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHH
Confidence                 01111             111122223333333333211100               00      1123456799


Q ss_pred             HHHHHHHHcCChHHHHHHHHHhh
Q 032655          111 LRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus       111 l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      .+|+-|+..|...+|+.+|.+|=
T Consensus       972 hlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  972 HLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999874

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.32  E-value=1.2  Score=37.48  Aligned_cols=119  Identities=14%  Similarity=0.039  Sum_probs=82.9

Q ss_pred             HHHHcCChhhHHHHHHHHhccCCChH----HHHHHHHHHhccCChHHHHHHHhcCcccccC--------cchHHHHHHHH
Q 032655           15 DCVSKHLYSSAIFFANEVAALTNDPA----DVYMQAQALFLGRHYRRPFHLLNSSKIVLRD--------LRFRYLAAKCL   82 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~~~~----~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~--------~~~~~l~a~c~   82 (136)
                      +|..-+.|++|.|.+--+..++.+.+    -...+|..|.++|+-..-.++++..+-..++        ..+.|+.|.-.
T Consensus       376 ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa  455 (629)
T KOG2300|consen  376 YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA  455 (629)
T ss_pred             HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence            34455889999999999888886433    2456789999999977777777665432222        25689999999


Q ss_pred             HHccChhhhhhhhhh----h--hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           83 EELRSGTSVCRCSVM----L--RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~----~--~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      +..+++.||-..+..    .  -|-+...+--..|+|.++.-.||..++.+--+-|+
T Consensus       456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam  512 (629)
T KOG2300|consen  456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM  512 (629)
T ss_pred             HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence            999999999543222    1  11233445555588999999999988876544443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=93.27  E-value=0.72  Score=35.22  Aligned_cols=118  Identities=13%  Similarity=-0.074  Sum_probs=86.4

Q ss_pred             HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655           17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCRC   94 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~   94 (136)
                      -+.|.+.=|-.=++..+++.| -|+-.-++|.-+...|+|+-|++.+.+ ..+++...-.....|..++--|+|.-|.+.
T Consensus        76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d  155 (297)
T COG4785          76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD  155 (297)
T ss_pred             hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH
Confidence            345677777777888999999 455666789999999999999998865 456777767777788888888888776321


Q ss_pred             h---------------------------------------------hh-----hhc----------------cc----ch
Q 032655           95 S---------------------------------------------VM-----LRL----------------LK----MI  104 (136)
Q Consensus        95 ~---------------------------------------------~~-----~~~----------------~~----~~  104 (136)
                      .                                             ++     .++                ++    ..
T Consensus       156 ~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~  235 (297)
T COG4785         156 LLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEH  235 (297)
T ss_pred             HHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHH
Confidence            0                                             00     000                11    23


Q ss_pred             HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655          105 SSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      -+..++.+|+-|..+|...+|..-||-|+.
T Consensus       236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         236 LTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            445688999999999999999999998764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.00  E-value=3.3  Score=31.81  Aligned_cols=92  Identities=14%  Similarity=0.075  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHcC-ChhhHHHHHHHHhccC----C----ChH-------HHHHHHHHHhccCChHH---HHHHHh
Q 032655            3 EEEIEKLRGLVRDCVSKH-LYSSAIFFANEVAALT----N----DPA-------DVYMQAQALFLGRHYRR---PFHLLN   63 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~-~~~~Alf~aekl~~~~----~----~~~-------~~~~la~~l~~~g~~~~---A~~~l~   63 (136)
                      +++.+.+-..-.+-+..+ ++++|++|-++++...    +    .++       -...++.++...+.++.   |..+++
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            456666667777778888 9999999999999883    1    111       26678999999998764   444443


Q ss_pred             cCcc-cccCcchHHHHHHHHHHccChhhhhhh
Q 032655           64 SSKI-VLRDLRFRYLAAKCLEELRSGTSVCRC   94 (136)
Q Consensus        64 ~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~   94 (136)
                      -... .+.++....+.-+.+.+.++.+++.+.
T Consensus       112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~  143 (278)
T PF08631_consen  112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEI  143 (278)
T ss_pred             HHHHhCCCCcHHHHHHHHHHhccCChhHHHHH
Confidence            3321 346777877888888886666666543

It is also involved in sporulation [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.95  E-value=0.99  Score=37.67  Aligned_cols=48  Identities=13%  Similarity=0.313  Sum_probs=25.5

Q ss_pred             HcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655           18 SKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      .+|+|..+..++.=+..+.|+|...=++|.|++-+..|.+|..++.+.
T Consensus       474 sqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  474 SQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             hcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            345555555555555555555555555555555555555555555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.63  E-value=0.069  Score=42.69  Aligned_cols=87  Identities=16%  Similarity=0.059  Sum_probs=42.2

Q ss_pred             HHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHH
Q 032655           48 ALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQAR  126 (136)
Q Consensus        48 ~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~  126 (136)
                      --+..|.+..|++++.+. .+.+......--.|..++++++...|+......+..++..+.-+-.+|...+.+|+.++|.
T Consensus       123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            344445555555544332 2222333333334455556666655554333222222333333445666666666666666


Q ss_pred             HHHHHhhc
Q 032655          127 LWLVSCDE  134 (136)
Q Consensus       127 ~~y~~AL~  134 (136)
                      ..+..|++
T Consensus       203 ~dl~~a~k  210 (377)
T KOG1308|consen  203 HDLALACK  210 (377)
T ss_pred             HHHHHHHh
Confidence            66666654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.61  E-value=0.3  Score=40.54  Aligned_cols=75  Identities=16%  Similarity=0.047  Sum_probs=57.3

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC---C--hHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHHcc
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN---D--PADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~---~--~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~l~   86 (136)
                      +-...+++.+.|+-+.+++....+   .  .--+|-+|+|+...++|++|.+......-  .-++.-..|+.|-|+..++
T Consensus       275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~  354 (468)
T PF10300_consen  275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG  354 (468)
T ss_pred             HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence            344556999999999998774332   2  23588899999999999999986654321  1246678899999999999


Q ss_pred             Ch
Q 032655           87 SG   88 (136)
Q Consensus        87 ~~   88 (136)
                      +.
T Consensus       355 ~~  356 (468)
T PF10300_consen  355 RE  356 (468)
T ss_pred             cc
Confidence            99

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=92.56  E-value=0.38  Score=33.91  Aligned_cols=62  Identities=18%  Similarity=-0.077  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           74 FRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        74 ~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      -.-+.|..+.+.|+.++|++.....+.-.|..++++.++.+.++-+|+.++|.+-+.+||++
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL  106 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL  106 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence            45678889999999999998776655555678888999999999999999999999999976

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.53  E-value=1.6  Score=37.05  Aligned_cols=111  Identities=15%  Similarity=0.087  Sum_probs=70.8

Q ss_pred             CChhhHHHHHHHHhcc------CCChHHHHHHHHHHhccC-----ChHHHHHHHhcCcccccCcchHHHHHHHHHHcc--
Q 032655           20 HLYSSAIFFANEVAAL------TNDPADVYMQAQALFLGR-----HYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELR--   86 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~------~~~~~~~~~la~~l~~~g-----~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~--   86 (136)
                      .+.+.|++|..++...      ...+...+-+|.||....     ++..|+.++.+.. ...++.+.+++|.|+..--  
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-~~g~~~a~~~lg~~~~~g~~~  341 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-ELGNPDAQYLLGVLYETGTKE  341 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-hcCCchHHHHHHHHHHcCCcc
Confidence            5889999999998661      235667888999999864     5677988775543 2478899999999998876  


Q ss_pred             -ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc----CChHHHHHHHHHhh
Q 032655           87 -SGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL----GNCAQARLWLVSCD  133 (136)
Q Consensus        87 -~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~----~~~~~A~~~y~~AL  133 (136)
                       ++..|.+.......  .-.....+.+|.||+.-    -+.++|+.||++|-
T Consensus       342 ~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA  391 (552)
T KOG1550|consen  342 RDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAA  391 (552)
T ss_pred             ccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence             23344332211110  01122234445555432    46777777777763

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=92.52  E-value=0.099  Score=43.28  Aligned_cols=84  Identities=10%  Similarity=0.069  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHH-HHhcCcccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFH-LLNSSKIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~-~l~~~~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +..-....+--+.|+.|+-.+-|++.+.| ...-.-.-++.+...+.|+.|++ +++...+++....|++..|.+|.+++
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            34444556667899999999999999999 44455556789999999999988 77777888889999999999999999


Q ss_pred             Chhhhh
Q 032655           87 SGTSVC   92 (136)
Q Consensus        87 ~~~ea~   92 (136)
                      ++.+|.
T Consensus        87 ~~~~A~   92 (476)
T KOG0376|consen   87 EFKKAL   92 (476)
T ss_pred             HHHHHH
Confidence            999985

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.47  E-value=0.22  Score=26.65  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHh
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLN   63 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~   63 (136)
                      ++.++-+|-++++.|+|++|+++++
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~   25 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQ   25 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5788999999999999999998843

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.41  E-value=0.2  Score=35.07  Aligned_cols=69  Identities=22%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             hHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhh
Q 032655           24 SAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        24 ~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      .-.-.|.+.+.+-++++.+...|+-.+..|+|.-|.++++..-. ++.+...+.+.+.++.++|.-.+..
T Consensus        55 ~p~~~A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~  124 (141)
T PF14863_consen   55 PPEEEAKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA  124 (141)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred             ChHHHHHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence            34456778888888899999999999999999999999877543 6788899999999999999877643

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.36  E-value=2.2  Score=33.12  Aligned_cols=81  Identities=14%  Similarity=0.103  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHH
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKC   81 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c   81 (136)
                      |+++-.+..+.-|.++|.+++|.-.-||+.-+..  +|++...         -|.||+.+++.......-.+...-.++.
T Consensus        89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~Alq---------lYqralavve~~dr~~ma~el~gk~sr~  159 (308)
T KOG1585|consen   89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQ---------LYQRALAVVEEDDRDQMAFELYGKCSRV  159 (308)
T ss_pred             HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHH---------HHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence            5566677777888888888888888888775543  6766443         2566667666554333334455566777


Q ss_pred             HHHccChhhhhh
Q 032655           82 LEELRSGTSVCR   93 (136)
Q Consensus        82 ~~~l~~~~ea~~   93 (136)
                      +.++++|.||.-
T Consensus       160 lVrl~kf~Eaa~  171 (308)
T KOG1585|consen  160 LVRLEKFTEAAT  171 (308)
T ss_pred             hhhhHHhhHHHH
Confidence            899999999753

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.27  E-value=0.22  Score=25.22  Aligned_cols=25  Identities=8%  Similarity=0.103  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhc
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNS   64 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~   64 (136)
                      +.++.+|.++...|+++.|++.+++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~   26 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEK   26 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3466777777777777777777655

...

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=92.27  E-value=4.9  Score=32.77  Aligned_cols=133  Identities=13%  Similarity=0.009  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHH-------HHHHHhccCCh--------------HHHHHH
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYM-------QAQALFLGRHY--------------RRPFHL   61 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~-------la~~l~~~g~~--------------~~A~~~   61 (136)
                      ++...++|.+-+.+...++|+.|.-.-+-+...+.+...|.+       .|.|+++.|..              +.|+..
T Consensus       205 ~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~  284 (414)
T PF12739_consen  205 DSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT  284 (414)
T ss_pred             CChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence            456778999999999999999999999999887765444444       35678888754              233332


Q ss_pred             HhcC-----cccccCcchHHHHHHHHHHccChhhhhhh--------h----h-------------hh--hcc-c--ch--
Q 032655           62 LNSS-----KIVLRDLRFRYLAAKCLEELRSGTSVCRC--------S----V-------------ML--RLL-K--MI--  104 (136)
Q Consensus        62 l~~~-----~l~~~~~~~~~l~a~c~~~l~~~~ea~~~--------~----~-------------~~--~~~-~--~~--  104 (136)
                      ..+.     ....-...|..+.+.++.-.+.|.++.+.        .    .             ..  ... .  +.  
T Consensus       285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~  364 (414)
T PF12739_consen  285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLT  364 (414)
T ss_pred             HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccch
Confidence            2221     11123456888999999999999886321        0    0             01  111 1  22  


Q ss_pred             ---HhHHHHHH-HHHHHHcCChHHHHHHHHHhhcc
Q 032655          105 ---SSAICFLR-GKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       105 ---~a~i~~l~-G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                         .++.++++ |.-|.+.|++..|..||..|+..
T Consensus       365 r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v  399 (414)
T PF12739_consen  365 RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQV  399 (414)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence               56677766 99999999999999999999853

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.02  E-value=3.4  Score=33.53  Aligned_cols=111  Identities=10%  Similarity=-0.062  Sum_probs=67.2

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-----cccCcchHHHHHHHHHHccChhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-----VLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-----~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      |.+-+|..-=||++.-.| +.-.|-.--..+|.+|....-...+++.--     .|-..-...+++.|+.++|-|++|+.
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk  196 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK  196 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence            444455555578888888 555555555567777776655555544210     11112345788999999999999986


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLV  130 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~  130 (136)
                      .....+..++..+=..+-+..+++.-++.++++++-.
T Consensus       197 ~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  197 QADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             HHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence            5544333334444444555666666666666666543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.81  E-value=0.18  Score=40.82  Aligned_cols=119  Identities=9%  Similarity=-0.049  Sum_probs=66.5

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHh---ccCChHH----HHHHHhcCcccc---------cCcchHHH
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALF---LGRHYRR----PFHLLNSSKIVL---------RDLRFRYL   77 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~---~~g~~~~----A~~~l~~~~l~~---------~~~~~~~l   77 (136)
                      ..-+..+|+.-+---|+=+...| .|++-..=....|   ..|++..    +-.-+++..+..         +..+ .-=
T Consensus        24 F~~DL~~WE~diK~KDkel~~Q~~~Pan~~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~dL~vd~I~~~LL~~~SE-iKE  102 (536)
T KOG4648|consen   24 FVKDLYSWEQDIKNKDKELQKQPLSPANKDLPVRSHFRTDKSGKESPSSKKARSPIEKQDLPVDPIAQQLLKKASE-IKE  102 (536)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhCCCCccccCCchhhhcccCCCCCcCcchhhhhcchhhccCCccHHHHHHHHhhHH-HHH
Confidence            34456778888888888776664 3322111111122   2455522    222233322211         0111 244


Q ss_pred             HHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           78 AAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        78 ~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .|.-+|+.|+|+||+|+.....+-.|..+..+-+++.+|.++.++..|..-...|+.
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia  159 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA  159 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            688899999999999987654432333333444778888888888777766666654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=91.79  E-value=1.3  Score=40.11  Aligned_cols=122  Identities=10%  Similarity=-0.040  Sum_probs=79.6

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC---ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN---DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~---~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      .++.+.+...|+.|.-..-+.-...|   -.++|...|.-+...++++.|+.-++++ ..+|++..|+--+|.+|...|+
T Consensus       532 ~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr  611 (1238)
T KOG1127|consen  532 SADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR  611 (1238)
T ss_pred             HHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc
Confidence            34444444555555444222222223   2346777888888888888888877654 3477888888889999999999


Q ss_pred             hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      |.-|+....+...-.|..-..-|-...+-+.+|.+++|+..+.+.+
T Consensus       612 y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  612 YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            9888765543221224444455667788888888888888777654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.60  E-value=1.4  Score=33.20  Aligned_cols=81  Identities=11%  Similarity=0.003  Sum_probs=64.1

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCCC----hHHHHH--HHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHcc
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTND----PADVYM--QAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~--la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      .....+|.|+.|.---..++.++|+    ..++.+  -|-|+...+.++.|+.-+ +...+.+....+.--.|..|-++.
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME  182 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence            3445679999999999999999982    224444  488999999999999966 555666777777777799999999


Q ss_pred             Chhhhhhh
Q 032655           87 SGTSVCRC   94 (136)
Q Consensus        87 ~~~ea~~~   94 (136)
                      +|++|++.
T Consensus       183 k~eealeD  190 (271)
T KOG4234|consen  183 KYEEALED  190 (271)
T ss_pred             hHHHHHHH
Confidence            99999753

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.42  E-value=0.27  Score=25.79  Aligned_cols=23  Identities=4%  Similarity=0.076  Sum_probs=14.9

Q ss_pred             HHHHHHHHhccCChHHHHHHHhc
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNS   64 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~   64 (136)
                      +..+|.++...|+|++|+++.++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            45567777777777777776655

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.39  E-value=0.29  Score=28.50  Aligned_cols=23  Identities=13%  Similarity=0.223  Sum_probs=12.2

Q ss_pred             HHHHHHHHhccCChHHHHHHHhc
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNS   64 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~   64 (136)
                      +|++|..+++.|+|.+|..+++.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~   26 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDA   26 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHH
Confidence            45555555555555555555544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.38  E-value=2.9  Score=32.63  Aligned_cols=83  Identities=16%  Similarity=0.045  Sum_probs=46.1

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccC-CChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccCh
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALT-NDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~-~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      +||.-.-....+.+|....+-+..-+ |.|.-.--+|.|....|+|++|..+++.+.. ..+.|+..-..-.|-.-+|+-
T Consensus       178 awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  178 AWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            45555555555666666666665533 3555555566666666666666665544332 334555555555555556665


Q ss_pred             hhhhh
Q 032655           89 TSVCR   93 (136)
Q Consensus        89 ~ea~~   93 (136)
                      .++.+
T Consensus       258 ~~~~~  262 (299)
T KOG3081|consen  258 AEVTE  262 (299)
T ss_pred             hHHHH
Confidence            55543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=91.34  E-value=2  Score=30.25  Aligned_cols=58  Identities=17%  Similarity=0.058  Sum_probs=44.0

Q ss_pred             CCChHHHHHHHHHHhccCChH---HHHHHHhcCc--c-cccCcchHHHHHHHHHHccChhhhhh
Q 032655           36 TNDPADVYMQAQALFLGRHYR---RPFHLLNSSK--I-VLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        36 ~~~~~~~~~la~~l~~~g~~~---~A~~~l~~~~--l-~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      +++.++-|.+|+|+-.+.+-.   +-+.+|+..-  - ....-.|.|.+|..++++|+|+.+..
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~   92 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLR   92 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHH
Confidence            557889999999999988855   4455664422  1 22556899999999999999999863

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.18  E-value=2  Score=33.00  Aligned_cols=117  Identities=16%  Similarity=0.085  Sum_probs=71.0

Q ss_pred             HHHcCChhhHHHHHHHHhccCC--ChHH-------HHHHHHHHhccC-ChHHHHHHHhcC-cc-------ccc-------
Q 032655           16 CVSKHLYSSAIFFANEVAALTN--DPAD-------VYMQAQALFLGR-HYRRPFHLLNSS-KI-------VLR-------   70 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~--~~~~-------~~~la~~l~~~g-~~~~A~~~l~~~-~l-------~~~-------   70 (136)
                      +..+|+.+-|..+..|+-.+-+  +|+.       .|..|..++..+ +|..|...++++ .+       ...       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            4578999999999999876652  4443       777899999999 998887776542 22       112       


Q ss_pred             CcchHHHHHHHHHHccChhhhhhhh---hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           71 DLRFRYLAAKCLEELRSGTSVCRCS---VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        71 ~~~~~~l~a~c~~~l~~~~ea~~~~---~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      ...+..+++.++.+.+.++......   ..-..+.|....++++.=++..+.++.+.+-+-+.+.
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m  147 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM  147 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence            2246788899999988886543321   1111123333444444444444455555555544443

It is also involved in sporulation [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.14  E-value=1.9  Score=34.67  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC--ChH-HHHHHHHHHhccCChHHHHHHHhcCcc------cccCcchHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN--DPA-DVYMQAQALFLGRHYRRPFHLLNSSKI------VLRDLRFRYLAA   79 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~-~~~~la~~l~~~g~~~~A~~~l~~~~l------~~~~~~~~~l~a   79 (136)
                      |-.-|+.-.+.|.|.||+-||.-+++++|  +|- ..+.+=.--.+.++|+=-+.+.++...      ...-|.+.|-.|
T Consensus       106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a  185 (360)
T PF04910_consen  106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA  185 (360)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence            45566777778999999999999999999  444 355555566778889888887776432      123578999999


Q ss_pred             HHHHHccCh
Q 032655           80 KCLEELRSG   88 (136)
Q Consensus        80 ~c~~~l~~~   88 (136)
                      .|++.+++-
T Consensus       186 LA~~~l~~~  194 (360)
T PF04910_consen  186 LAYFRLEKE  194 (360)
T ss_pred             HHHHHhcCc
Confidence            999999998

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.98  E-value=0.98  Score=35.01  Aligned_cols=77  Identities=14%  Similarity=0.073  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHH-HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHH
Q 032655            3 EEEIEKLRGLV-RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAA   79 (136)
Q Consensus         3 ~~~~~~lr~~i-~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a   79 (136)
                      .+++.||.... .-++...+++.|++.+++++.++| +|..+---|..|.+.|-++-|+.-+..+.- .+..+.|-.+.+
T Consensus       177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            34555554444 456677999999999999999999 898999999999999999999987766432 345555544433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.93  E-value=3  Score=34.57  Aligned_cols=28  Identities=14%  Similarity=-0.040  Sum_probs=24.5

Q ss_pred             HhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655          105 SSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus       105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      ....|-.+|....++||.+.|.+||+++
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            4457889999999999999999999886

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.87  E-value=3.5  Score=31.85  Aligned_cols=97  Identities=11%  Similarity=-0.073  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCcc-c----ccCcchHHHHHHHHHHccChhhhhhhhh--------hh-------
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSKI-V----LRDLRFRYLAAKCLEELRSGTSVCRCSV--------ML-------   98 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~----~~~~~~~~l~a~c~~~l~~~~ea~~~~~--------~~-------   98 (136)
                      ...+..++......|++..|...+....- .    ...+...+-.++.+.+.|+..+|+....        ..       
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~  225 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA  225 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence            34566667777777777777666654321 0    0155666667777777777777643210        00       


Q ss_pred             -----------------hc--ccchHhHHHHHHHHHHHHc------CChHHHHHHHHHhhcc
Q 032655           99 -----------------RL--LKMISSAICFLRGKAYEAL------GNCAQARLWLVSCDEF  135 (136)
Q Consensus        99 -----------------~~--~~~~~a~i~~l~G~~~~~~------~~~~~A~~~y~~AL~~  135 (136)
                                       .+  .....+-+++++|+-...+      +..+++...|++|.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~  287 (352)
T PF02259_consen  226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL  287 (352)
T ss_pred             HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh
Confidence                             00  1134566777889999888      9999999999998764

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.68  E-value=0.59  Score=28.23  Aligned_cols=27  Identities=15%  Similarity=0.131  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          109 CFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +...|.-++..|++++|+++|++|+..
T Consensus         8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    8 LIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            446799999999999999999999864

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.45  E-value=1.4  Score=33.84  Aligned_cols=61  Identities=10%  Similarity=-0.013  Sum_probs=36.8

Q ss_pred             chHHHHHHHHHHccChhhhhhhhhhhhc------ccchHhHHHHHHHHHHHHc-CChHHHHHHHHHhh
Q 032655           73 RFRYLAAKCLEELRSGTSVCRCSVMLRL------LKMISSAICFLRGKAYEAL-GNCAQARLWLVSCD  133 (136)
Q Consensus        73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~------~~~~~a~i~~l~G~~~~~~-~~~~~A~~~y~~AL  133 (136)
                      ...|.-|-=|++-.+.++|++.....++      .....+--+.-+|.+|+.- .++++|+.+|++|=
T Consensus        74 at~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa  141 (288)
T KOG1586|consen   74 ATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA  141 (288)
T ss_pred             HHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3345544445556677777765543221      1234444455778888755 88888888888763

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.41  E-value=0.88  Score=26.45  Aligned_cols=24  Identities=17%  Similarity=-0.043  Sum_probs=19.7

Q ss_pred             chHHHHHHHHHHccChhhhhhhhh
Q 032655           73 RFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        73 ~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      +|.|.+|..++++|+|++|.....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~   25 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCD   25 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHH
Confidence            588999999999999999976543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.33  E-value=0.46  Score=29.75  Aligned_cols=31  Identities=16%  Similarity=-0.002  Sum_probs=26.0

Q ss_pred             HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          105 SSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+..+..+..-+++.|++++|+.+|++|.+.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4455567799999999999999999999764

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.27  E-value=0.54  Score=22.84  Aligned_cols=23  Identities=22%  Similarity=0.106  Sum_probs=14.2

Q ss_pred             HHHHHHHHHhccCChHHHHHHHh
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLN   63 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~   63 (136)
                      ..+.+|..+...|++.+|..+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34566666666666666666553

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=89.80  E-value=0.89  Score=39.20  Aligned_cols=87  Identities=13%  Similarity=-0.082  Sum_probs=57.7

Q ss_pred             hccCChHHHHHHHhcCcc-cc-cCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655           50 FLGRHYRRPFHLLNSSKI-VL-RDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL  127 (136)
Q Consensus        50 ~~~g~~~~A~~~l~~~~l-~~-~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~  127 (136)
                      .-.|+.+.|..+|..+-+ .+ ..--....+|+.+.+-|-..+|-.-..-.+.-+..+.-.+|.+|..|..+.|...|++
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            346888999988866543 22 3333456778888887766665332221121122344456678999999999999999


Q ss_pred             HHHHhhccC
Q 032655          128 WLVSCDEFT  136 (136)
Q Consensus       128 ~y~~AL~~~  136 (136)
                      .|++|++.|
T Consensus       698 ~~~~a~~~~  706 (886)
T KOG4507|consen  698 AFRQALKLT  706 (886)
T ss_pred             HHHHHHhcC
Confidence            999999864

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.37  E-value=0.7  Score=37.83  Aligned_cols=52  Identities=13%  Similarity=0.128  Sum_probs=42.2

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcCccccc---------CcchHHHHHHHHHHccChhhhhh
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSSKIVLR---------DLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~~l~~~---------~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      +.-+...+-+.|+|+.|++.++...+..+         |....|-.|.|++.+++|.+|+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir  185 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIR  185 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHH
Confidence            34456688899999999999988765332         45568999999999999999974

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=89.36  E-value=0.67  Score=29.79  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=22.4

Q ss_pred             HHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHH
Q 032655           29 ANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLL   62 (136)
Q Consensus        29 aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l   62 (136)
                      .++.++.+| +++..|.+|..+...|+++.|++.+
T Consensus        11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~L   45 (90)
T PF14561_consen   11 LEAALAANPDDLDARYALADALLAAGDYEEALDQL   45 (90)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            455566677 6677777777777777777777644

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.13  E-value=0.39  Score=42.37  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=63.2

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCcccc------cCcchHHHHHHHHHHc---cChhhhhhhhhhhhc-ccchHhH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSKIVL------RDLRFRYLAAKCLEEL---RSGTSVCRCSVMLRL-LKMISSA  107 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~------~~~~~~~l~a~c~~~l---~~~~ea~~~~~~~~~-~~~~~a~  107 (136)
                      .++.|..+-..|....+|..-+.+.+..+-.+      .+....|.+|.++..-   |+-+.|++....-+. .-+..+.
T Consensus       200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD  279 (1226)
T KOG4279|consen  200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD  279 (1226)
T ss_pred             CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence            46778889889999999987777765533222      1223335555544433   333445554332222 2356778


Q ss_pred             HHHHHHHHHHHc---------CChHHHHHHHHHhhcc
Q 032655          108 ICFLRGKAYEAL---------GNCAQARLWLVSCDEF  135 (136)
Q Consensus       108 i~~l~G~~~~~~---------~~~~~A~~~y~~AL~~  135 (136)
                      ++++-|+||+.+         +.++-|++||++|.+.
T Consensus       280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev  316 (1226)
T KOG4279|consen  280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV  316 (1226)
T ss_pred             eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence            889999999765         6788999999999863

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.87  E-value=4.4  Score=34.37  Aligned_cols=107  Identities=11%  Similarity=-0.005  Sum_probs=71.4

Q ss_pred             HHHHHHHHhccCCChHHHHHHHHHHhcc-----CChHHHHHHHhcCcc------cccCcchHHHHHHHHHHcc-----Ch
Q 032655           25 AIFFANEVAALTNDPADVYMQAQALFLG-----RHYRRPFHLLNSSKI------VLRDLRFRYLAAKCLEELR-----SG   88 (136)
Q Consensus        25 Alf~aekl~~~~~~~~~~~~la~~l~~~-----g~~~~A~~~l~~~~l------~~~~~~~~~l~a~c~~~l~-----~~   88 (136)
                      ..|-.-+-.+..++....+.+|+|++.-     .+.+.|+.+++....      ..-++...+-+|.||.+-.     ++
T Consensus       230 ~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~  309 (552)
T KOG1550|consen  230 EAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDY  309 (552)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccH
Confidence            3444444455556778888999998876     568899998876521      2336778899999999964     23


Q ss_pred             hhhhhhhhhhhc-ccchHhHHHHHHHHHHHHcC---ChHHHHHHHHHhhc
Q 032655           89 TSVCRCSVMLRL-LKMISSAICFLRGKAYEALG---NCAQARLWLVSCDE  134 (136)
Q Consensus        89 ~ea~~~~~~~~~-~~~~~a~i~~l~G~~~~~~~---~~~~A~~~y~~AL~  134 (136)
                      +.|........+ +.|   ...+++|.+|....   |..+|.++|..|-+
T Consensus       310 ~~A~~~~~~aA~~g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  310 EKALKLYTKAAELGNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             HHHHHHHHHHHhcCCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence            334433222111 222   34478899998877   66899999998853

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=88.76  E-value=2.2  Score=38.00  Aligned_cols=110  Identities=15%  Similarity=0.056  Sum_probs=60.9

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCCChHH-HHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTNDPAD-VYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~~~~~-~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      |-.|-+.|.|++|+-.|+-.  -.|..+- ---+=+.+...||-.+|-++-.+-+ +  .    .-.-+-|.+.|+.-.|
T Consensus       564 igmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdg-d--~----laaiqlyika~~p~~a  634 (1636)
T KOG3616|consen  564 IGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDTGQDEKAAELKESDG-D--G----LAAIQLYIKAGKPAKA  634 (1636)
T ss_pred             HHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhcCchhhhhhhccccC-c--c----HHHHHHHHHcCCchHH
Confidence            34444556666666665532  1232221 1122345888999999888544322 1  1    1122345677888776


Q ss_pred             hhh----hhhhhc-----cc---chHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655           92 CRC----SVMLRL-----LK---MISSAICFLRGKAYEALGNCAQARLWLVS  131 (136)
Q Consensus        92 ~~~----~~~~~~-----~~---~~~a~i~~l~G~~~~~~~~~~~A~~~y~~  131 (136)
                      ...    .+...+     .+   -..+.++---|.+|++..++++|++||++
T Consensus       635 ~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkk  686 (1636)
T KOG3616|consen  635 ARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKK  686 (1636)
T ss_pred             HHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHc
Confidence            431    111111     11   12333333559999999999999999986

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.28  E-value=3.1  Score=30.94  Aligned_cols=86  Identities=13%  Similarity=-0.014  Sum_probs=63.5

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccC
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      +-....+.++++.|+---.-.+..+.+    +-.-..+|.+++..|+++.|+..|+...-..-.+...-+.|..+...|+
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~  174 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD  174 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence            344556778888887776666655542    2236778999999999999999998765322344457899999999999


Q ss_pred             hhhhhhhhhh
Q 032655           88 GTSVCRCSVM   97 (136)
Q Consensus        88 ~~ea~~~~~~   97 (136)
                      -++|......
T Consensus       175 k~~Ar~ay~k  184 (207)
T COG2976         175 KQEARAAYEK  184 (207)
T ss_pred             hHHHHHHHHH
Confidence            9999765543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.24  E-value=0.99  Score=21.86  Aligned_cols=22  Identities=23%  Similarity=0.138  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHH
Q 032655          109 CFLRGKAYEALGNCAQARLWLV  130 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~  130 (136)
                      .+.+|.++..+|+.++|...+.
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            4566777777777777766554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=87.87  E-value=0.48  Score=39.37  Aligned_cols=91  Identities=15%  Similarity=0.043  Sum_probs=69.2

Q ss_pred             HHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChH
Q 032655           45 QAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCA  123 (136)
Q Consensus        45 la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~  123 (136)
                      .|...+.-+.|..|+.+. +...+++.+....-+.+..+++.+.|..|+......+..-|...-.++.+|..+.+++.+.
T Consensus        10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~   89 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK   89 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence            355667778899998866 4456666777788889999999999999987655433222545555678899999999999


Q ss_pred             HHHHHHHHhhcc
Q 032655          124 QARLWLVSCDEF  135 (136)
Q Consensus       124 ~A~~~y~~AL~~  135 (136)
                      +|..-|....++
T Consensus        90 ~A~~~l~~~~~l  101 (476)
T KOG0376|consen   90 KALLDLEKVKKL  101 (476)
T ss_pred             HHHHHHHHhhhc
Confidence            999999876654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=87.86  E-value=4.8  Score=34.25  Aligned_cols=84  Identities=7%  Similarity=-0.040  Sum_probs=58.9

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      -|...++.|+...|-.-..-++--.| .|.-+.+.+...-..|.|+.++..+....- ........-..-+..+++|+|+
T Consensus       295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~  374 (831)
T PRK15180        295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR  374 (831)
T ss_pred             HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence            34555566666665444444444456 888899999999999999999998866532 2233344455678999999999


Q ss_pred             hhhhhh
Q 032655           90 SVCRCS   95 (136)
Q Consensus        90 ea~~~~   95 (136)
                      +|....
T Consensus       375 ~a~s~a  380 (831)
T PRK15180        375 EALSTA  380 (831)
T ss_pred             HHHHHH
Confidence            997644

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.64  E-value=2.7  Score=32.61  Aligned_cols=93  Identities=16%  Similarity=0.017  Sum_probs=53.9

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHH-------HccChhhhhhhhh----hhhc-ccchHhHHH
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLE-------ELRSGTSVCRCSV----MLRL-LKMISSAIC  109 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~-------~l~~~~ea~~~~~----~~~~-~~~~~a~i~  109 (136)
                      ...-+.|+....+|++|-..|.++.---.+...++-.|+.+.       +++++.|+.+-.+    .+.. +.|..+++-
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma  113 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA  113 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence            444567777788899987766543211123344455555543       4556666654322    2332 566666666


Q ss_pred             HHH-HHHHHHcCChHHHHHHHHHhhcc
Q 032655          110 FLR-GKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       110 ~l~-G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +=+ |++. ...+.++|+..|++++.+
T Consensus       114 leKAak~l-env~Pd~AlqlYqralav  139 (308)
T KOG1585|consen  114 LEKAAKAL-ENVKPDDALQLYQRALAV  139 (308)
T ss_pred             HHHHHHHh-hcCCHHHHHHHHHHHHHH
Confidence            644 4444 345678888888887754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.90  E-value=0.97  Score=23.54  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=15.5

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhc
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNS   64 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~   64 (136)
                      ....+|.+|...|+|.+|..++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~   27 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEE   27 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHH
Confidence            355677777777777777776654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=86.17  E-value=5.9  Score=32.54  Aligned_cols=122  Identities=7%  Similarity=-0.018  Sum_probs=75.1

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCCCh-------HHHHHHHHHHhccCChHHHHHHHhcC-------cccc----cCcch
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTNDP-------ADVYMQAQALFLGRHYRRPFHLLNSS-------KIVL----RDLRF   74 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~~~-------~~~~~la~~l~~~g~~~~A~~~l~~~-------~l~~----~~~~~   74 (136)
                      -.-++..+.++.++-.+|+++-...+.       .-..-+|..+.+..++++|+.+..++       .+..    -+-..
T Consensus       129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~  208 (518)
T KOG1941|consen  129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS  208 (518)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence            344555666777777777776554311       12455777778888888776655332       2111    12345


Q ss_pred             HHHHHHHHHHccChhhhhh---hhh-hhhc-cc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           75 RYLAAKCLEELRSGTSVCR---CSV-MLRL-LK-MISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        75 ~~l~a~c~~~l~~~~ea~~---~~~-~~~~-~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .|-.+.++..+|+.-+|-+   +.- ..+. +. +..+.-..-+|.||+..|..+.|-.-|.+|-.
T Consensus       209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence            6778888888888776644   221 1121 22 33333334669999999999999999998854

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.99  E-value=1  Score=28.43  Aligned_cols=31  Identities=10%  Similarity=-0.126  Sum_probs=26.2

Q ss_pred             HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          105 SSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .|-.+..+|..++..|..+.|+.+|++++..
T Consensus         7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~   37 (79)
T cd02679           7 QAFEEISKALRADEWGDKEQALAHYRKGLRE   37 (79)
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence            3445568899999999999999999999864

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.68  E-value=5.4  Score=25.28  Aligned_cols=57  Identities=12%  Similarity=0.047  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHH----HHHHHHHHhccCChHHHHHH
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPAD----VYMQAQALFLGRHYRRPFHL   61 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~----~~~la~~l~~~g~~~~A~~~   61 (136)
                      +.-+++..-++-| .++..+.|+---.+++.-.+++++    +-++.++|...|+|...+++
T Consensus         5 ~ak~~ie~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen    5 QAKQQIEKGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             HHHHHHHHHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666 678888888888888888875554    55677888888888888774

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=85.49  E-value=14  Score=28.01  Aligned_cols=111  Identities=12%  Similarity=0.057  Sum_probs=68.2

Q ss_pred             ChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcch---HHHHHHHHHHccChhhhhh
Q 032655           21 LYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRF---RYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        21 ~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~---~~l~a~c~~~l~~~~ea~~   93 (136)
                      +++.|+.|.. ..+..+.+...+.+|..+..    ..++.+|...++++-. .-++..   .+.+|.++..-+ -..+..
T Consensus        92 ~~~~A~~~~~-~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~-~~~~~~  168 (292)
T COG0790          92 DKTKAADWYR-CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGL-QALAVA  168 (292)
T ss_pred             cHHHHHHHHH-HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcCh-hhhccc
Confidence            4677888888 22333467788888888877    4488899888866532 234444   688888877754 111211


Q ss_pred             hh-----hhhhc-ccchHhHHHHHHHHHHHHc----CChHHHHHHHHHhhc
Q 032655           94 CS-----VMLRL-LKMISSAICFLRGKAYEAL----GNCAQARLWLVSCDE  134 (136)
Q Consensus        94 ~~-----~~~~~-~~~~~a~i~~l~G~~~~~~----~~~~~A~~~y~~AL~  134 (136)
                      ..     ..... ........++++|.+|..-    -|.++|+.||++|-+
T Consensus       169 ~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~  219 (292)
T COG0790         169 YDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE  219 (292)
T ss_pred             HHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence            11     00000 0012445567888888663    388999999998753

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.99  E-value=3.1  Score=33.02  Aligned_cols=87  Identities=14%  Similarity=0.019  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKC   81 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c   81 (136)
                      .++.++++|..+-.-...+.+--|||---.-..  -..-....+..+..+|.|.+|+++.++. .+++-+......+-+.
T Consensus       243 tide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~  322 (361)
T COG3947         243 TIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMAS  322 (361)
T ss_pred             CHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence            355666666666665666666666653222111  1122334455566666666666666543 2345555566666666


Q ss_pred             HHHccChhhh
Q 032655           82 LEELRSGTSV   91 (136)
Q Consensus        82 ~~~l~~~~ea   91 (136)
                      +..+|+--++
T Consensus       323 la~~gD~is~  332 (361)
T COG3947         323 LATLGDEISA  332 (361)
T ss_pred             HHHhccchhh
Confidence            6666664443

>smart00671 SEL1 Sel1-like repeats

Probab=84.86  E-value=2  Score=21.70  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHc----CChHHHHHHHHHhhc
Q 032655          108 ICFLRGKAYEAL----GNCAQARLWLVSCDE  134 (136)
Q Consensus       108 i~~l~G~~~~~~----~~~~~A~~~y~~AL~  134 (136)
                      .++.+|.+|..-    .|.++|..+|++|-+
T Consensus         3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~   33 (36)
T smart00671        3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE   33 (36)
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence            467778888654    389999999998753

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=84.68  E-value=22  Score=29.59  Aligned_cols=132  Identities=16%  Similarity=0.144  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC-hHHHHHHHHHHhccCChHHHHHHHhcCcc--------------
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNSSKI--------------   67 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~~~~~~la~~l~~~g~~~~A~~~l~~~~l--------------   67 (136)
                      |+-+-=||++--..-+.|..+.|.-+|+++....|. +=.+--.=......|+|+.|+.+++....              
T Consensus       151 EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rA  230 (531)
T COG3898         151 ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRA  230 (531)
T ss_pred             HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHH
Confidence            344456888888888999999999999999999883 22333333346678999999998865211              


Q ss_pred             ----------------------------cccCcchHHHHHHHHHHccChhhhhhh-------------------------
Q 032655           68 ----------------------------VLRDLRFRYLAAKCLEELRSGTSVCRC-------------------------   94 (136)
Q Consensus        68 ----------------------------~~~~~~~~~l~a~c~~~l~~~~ea~~~-------------------------   94 (136)
                                                  .+.-.......++.+++-|+..++...                         
T Consensus       231 vLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdt  310 (531)
T COG3898         231 VLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDT  310 (531)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCc
Confidence                                        111123457788888888888775210                         


Q ss_pred             ----h----------------hh-----hh---------------cccchHhHHHHHHHHHHHHc-CChHHHHHHHHHhh
Q 032655           95 ----S----------------VM-----LR---------------LLKMISSAICFLRGKAYEAL-GNCAQARLWLVSCD  133 (136)
Q Consensus        95 ----~----------------~~-----~~---------------~~~~~~a~i~~l~G~~~~~~-~~~~~A~~~y~~AL  133 (136)
                          .                ..     .+               +....-.++++|+..|-+.- |+-.++..|..+++
T Consensus       311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence                0                00     00               12234667788999998776 99999999999988


Q ss_pred             c
Q 032655          134 E  134 (136)
Q Consensus       134 ~  134 (136)
                      +
T Consensus       391 ~  391 (531)
T COG3898         391 K  391 (531)
T ss_pred             c
Confidence            6

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.41  E-value=18  Score=28.38  Aligned_cols=43  Identities=12%  Similarity=0.033  Sum_probs=30.7

Q ss_pred             cCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhh
Q 032655           52 GRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRC   94 (136)
Q Consensus        52 ~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~   94 (136)
                      .+++..|+.+.+...- -+..+....-.|.|+..+|+|+||+..
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l  229 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL  229 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence            3457788887766543 335566667788899999999998643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=84.28  E-value=3.3  Score=29.69  Aligned_cols=74  Identities=14%  Similarity=0.009  Sum_probs=52.8

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChH---HHHHHHhcCcccccCcchHHHHHHHHHHccCh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYR---RPFHLLNSSKIVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~---~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      .+-++..++|.+|+-..+.+..-.| .|-.--+++.|++..|++.   .|-+++...    .++..+. +.+.+.+...-
T Consensus        51 ~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~----~d~~a~~-Lv~~Ll~~~~~  125 (160)
T PF09613_consen   51 GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYADEVLESG----ADPDARA-LVRALLARADL  125 (160)
T ss_pred             HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcC----CChHHHH-HHHHHHHhccc
Confidence            4667889999999999999988888 7778899999999999954   445566653    2455543 33444444444


Q ss_pred             hhh
Q 032655           89 TSV   91 (136)
Q Consensus        89 ~ea   91 (136)
                      ..|
T Consensus       126 ~~a  128 (160)
T PF09613_consen  126 EPA  128 (160)
T ss_pred             cch
Confidence            443

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=84.28  E-value=2.1  Score=22.10  Aligned_cols=28  Identities=18%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             HHHHHHH--HHHHHcC-----ChHHHHHHHHHhhc
Q 032655          107 AICFLRG--KAYEALG-----NCAQARLWLVSCDE  134 (136)
Q Consensus       107 ~i~~l~G--~~~~~~~-----~~~~A~~~y~~AL~  134 (136)
                      ...+.+|  .+|....     |.++|++||++|-+
T Consensus         2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~   36 (39)
T PF08238_consen    2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE   36 (39)
T ss_dssp             HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence            3456777  6555554     57999999998854

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.65  E-value=1.9  Score=27.02  Aligned_cols=26  Identities=8%  Similarity=0.103  Sum_probs=22.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          110 FLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       110 ~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..++.-..+.|++++|+.+|+.|++.
T Consensus        10 a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681          10 ARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            35688899999999999999999864

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.59  E-value=1.7  Score=27.16  Aligned_cols=27  Identities=11%  Similarity=0.117  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          109 CFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +..++.-....|++++|+.+|.+||+.
T Consensus         9 l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           9 VLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            346689999999999999999999864

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=83.47  E-value=8  Score=30.21  Aligned_cols=63  Identities=13%  Similarity=0.067  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      |.-+.-+-+++...+..+.+++++---+++....| +...+..+-..|+++|....|+..+++.
T Consensus       150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l  213 (280)
T COG3629         150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            34456677788899999999999999999999999 7778888999999999999999888664

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=83.04  E-value=3.2  Score=29.94  Aligned_cols=47  Identities=19%  Similarity=0.114  Sum_probs=40.0

Q ss_pred             CChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc
Q 032655           20 HLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK   66 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~   66 (136)
                      ..-++.+-|+++.+...|+|.....++..+..+|+.++|-...+...
T Consensus       125 ~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~  171 (193)
T PF11846_consen  125 EMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR  171 (193)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34556778999999999999999999999999999999988776643

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=83.00  E-value=5.6  Score=32.93  Aligned_cols=55  Identities=11%  Similarity=0.184  Sum_probs=48.1

Q ss_pred             HHHHHHHHHcCChhhHHHHHHH--HhccCCChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655           10 RGLVRDCVSKHLYSSAIFFANE--VAALTNDPADVYMQAQALFLGRHYRRPFHLLNS   64 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aek--l~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~   64 (136)
                      ..+|+.|++.+.+++|+-.-.-  .+.++|++-+..++-..++..|+|..|..+...
T Consensus       107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~  163 (429)
T PF10037_consen  107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATE  163 (429)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHH
Confidence            5789999999999999988765  568889989999999999999999999886643

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.78  E-value=3.7  Score=28.72  Aligned_cols=48  Identities=13%  Similarity=0.025  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH   54 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~   54 (136)
                      +++-...+..++.++|.-|+-+++.++...| +.+...+.+.+|-..|.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            4455666778889999999999999999999 67778888887766654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=82.62  E-value=5.9  Score=32.53  Aligned_cols=124  Identities=10%  Similarity=0.043  Sum_probs=79.7

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCCC-------hHHHHHHHHHHhccCChHHHHHHHhcCcccc-cCc-----chHHHH
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTND-------PADVYMQAQALFLGRHYRRPFHLLNSSKIVL-RDL-----RFRYLA   78 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~~-------~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~-~~~-----~~~~l~   78 (136)
                      +++-.-+++.|+.++.+|--.....-+       -+....++..+-+.-+|++++.+-+...-.+ ..+     ......
T Consensus        49 l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~  128 (518)
T KOG1941|consen   49 LVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM  128 (518)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence            344555667777777666544333211       2345556777777778888888765532211 111     345668


Q ss_pred             HHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           79 AKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        79 a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |+++.-++.++++++..+..      .++...+-.+|.-+|..|-.+.++++|.-+-.+|+++
T Consensus       129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l  191 (518)
T KOG1941|consen  129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL  191 (518)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence            88888888888887754431      2233346667888899999999999998888888764

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=81.56  E-value=1.4  Score=36.81  Aligned_cols=51  Identities=14%  Similarity=0.094  Sum_probs=37.9

Q ss_pred             HHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           46 AQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        46 a~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      |.=+|..|+|+.|+-+..=-.-+..++..+=|+|.|++..++|+||.+...
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~  519 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQ  519 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            566889999999976431111012488999999999999999999977543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=81.25  E-value=3.2  Score=25.37  Aligned_cols=26  Identities=12%  Similarity=0.123  Sum_probs=22.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          110 FLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       110 ~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+|.-++..|++++|+.+|+.|++.
T Consensus        12 i~~Av~~d~~g~~~eAl~~Y~~a~e~   37 (77)
T smart00745       12 ISKALKADEAGDYEEALELYKKAIEY   37 (77)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35699999999999999999999864

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=80.99  E-value=4.8  Score=28.62  Aligned_cols=52  Identities=13%  Similarity=0.035  Sum_probs=43.2

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChH---HHHHHHhc
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYR---RPFHLLNS   64 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~---~A~~~l~~   64 (136)
                      .+-++..++|.+|+-..+.+..-.| .|-..-+++.|++..|++.   -|.+++..
T Consensus        51 g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A~~~le~  106 (153)
T TIGR02561        51 GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHADEVLAR  106 (153)
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence            4667889999999999999999887 5778899999999999943   44556655

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=80.91  E-value=5.8  Score=20.92  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhcc
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAAL   35 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~   35 (136)
                      ++.|..|+.....+....+|+.|..+=|++-.+
T Consensus         1 ~~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l   33 (36)
T PF02151_consen    1 EKLIKELEEKMEEAVENEDFEKAARLRDQIKAL   33 (36)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            467889999999999999999999998887654

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=80.83  E-value=2  Score=30.23  Aligned_cols=46  Identities=9%  Similarity=0.164  Sum_probs=36.7

Q ss_pred             CChhhHHHHHHHHhc-cCC--ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655           20 HLYSSAIFFANEVAA-LTN--DPADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus        20 ~~~~~Alf~aekl~~-~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      ......+-..|.++. .+|  ..+-+|++|..+|+.|+|.+++.+++..
T Consensus        49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l   97 (149)
T KOG3364|consen   49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL   97 (149)
T ss_pred             HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence            455667778888886 455  3456999999999999999999988763

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=80.52  E-value=19  Score=25.89  Aligned_cols=92  Identities=8%  Similarity=-0.113  Sum_probs=49.5

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcCcc----cccCcchHHHHHHHHHHccChhhhhhhhhh---hhc---ccchHhHHHHH
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSSKI----VLRDLRFRYLAAKCLEELRSGTSVCRCSVM---LRL---LKMISSAICFL  111 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~~l----~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~---~~~---~~~~~a~i~~l  111 (136)
                      +..+|.-|+..|++..|++.+.+..-    ........+..-+..+..++|.........   ..+   +.....-+-..
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~  118 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY  118 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            44566666666776666665544221    112334455556666666666665432211   011   11122233345


Q ss_pred             HHHHHHHcCChHHHHHHHHHhh
Q 032655          112 RGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus       112 ~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      .|..+...+++.+|.+.|-.++
T Consensus       119 ~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  119 EGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHhchHHHHHHHHHccC
Confidence            5777777788888887776654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=80.06  E-value=28  Score=27.58  Aligned_cols=77  Identities=9%  Similarity=0.004  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +..-|..++..|+..    -|+++...+.  +..-|++.-.+|..+|+|++-..+-++    .++|--+--+..+|.+.|
T Consensus       180 l~~Ti~~li~~~~~k----~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEK----QAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KKSPIGYEPFVEACLKYG  251 (319)
T ss_pred             HHHHHHHHHHCCCHH----HHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCCCChHHHHHHHHHCC
Confidence            344556666677765    4677776664  555788888889999998877776554    245666677788888888


Q ss_pred             Chhhhhh
Q 032655           87 SGTSVCR   93 (136)
Q Consensus        87 ~~~ea~~   93 (136)
                      ...+|..
T Consensus       252 ~~~eA~~  258 (319)
T PF04840_consen  252 NKKEASK  258 (319)
T ss_pred             CHHHHHH
Confidence            8888753

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-24

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 96.8 bits (241), Expect = 1e-24
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 2   REEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHL 61
                + LR    D + +  Y  A F   +V  +T +P D +  AQ       Y R   L
Sbjct: 80  SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCL 139

Query: 62  LNSSKIVLRDLRFRYLAAKCLEEL----------------RSGTSVCRCSVMLRLLKMIS 105
           L    +  R    RYLAA CL +L                R         +M      + 
Sbjct: 140 LTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE 199

Query: 106 SAICFLRGKAYEALGNCAQARLWL 129
           +++C+LRG+ Y  L N  +A+   
Sbjct: 200 ASMCYLRGQVYTNLSNFDRAKECY 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.59
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.52
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.5
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.48
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.48
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.48
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.47
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.46
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.44
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.44
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.43
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.43
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.43
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.43
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.41
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.41
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.41
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.41
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.41
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.39
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	99.38
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.37
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.37
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.37
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.35
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.35
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.34
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.34
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.33
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.33
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.33
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.33
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.32
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.31
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.3
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.3
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.29
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.29
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.28
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.28
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.28
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.28
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.27
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.27
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.26
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.26
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.25
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.25
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.25
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.24
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.23
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.22
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.22
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.21
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.21
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.2
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.2
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.19
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.19
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.18
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.18
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.17
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.17
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.16
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.11
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.1
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.09
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.09
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.03
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.01
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.01
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.01
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.98
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.96
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.94
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.93
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.92
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.92
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.89
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.88
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.88
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.88
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.85
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.85
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.85
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.84
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.83
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.82
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.81
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	98.81
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.79
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.78
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.76
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.74
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.69
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.68
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.66
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.65
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.62
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.62
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.6
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.59
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.58
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.56
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.54
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.54
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.46
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.41
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.4
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.37
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.36
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.34
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.32
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.32
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.3
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.28
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.23
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.22
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.2
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.19
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.05
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.05
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.03
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.99
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.99
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.97
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.89
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.81
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.8
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.65
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.54
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.49
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.35
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.29
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.26
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.21
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.97
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.9
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.53
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.48
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.47
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.34
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.76
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.52
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.48
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.4
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.25
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.75
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	93.16
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.02
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.96
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.52
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.42
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.15
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.81
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.68
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.63
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	90.6
2pm7_A	399	Protein WEB1, protein transport protein SEC31; bet	90.16
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.89
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.49
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.84
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	88.33
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	86.0
2p58_C	116	Putative type III secretion protein YSCG; type III	85.79
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.79
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	85.52
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	85.51
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	84.94
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	84.26
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	82.45
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	82.05
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	80.68

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.59  E-value=3e-15  Score=104.33  Aligned_cols=124  Identities=10%  Similarity=0.017  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      ++.+...+.+.+..+..      .++++.++| +++.++.+|.+++..|+|.+|+..+++. .++|.++..++.+|.|+.
T Consensus         8 ~~~~~~~l~~~~~~~~~------l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~   81 (151)
T 3gyz_A            8 NESISTAVIDAINSGAT------LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ   81 (151)
T ss_dssp             -CHHHHHHHHHHHTSCC------TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCC------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34555666666666643      567788888 7889999999999999999999999765 447789999999999999


Q ss_pred             HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+|+|++|++.....+.-.|....+++.+|.+|..+|++++|+.+|++|+++
T Consensus        82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A           82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999998776554444556678899999999999999999999999875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.58  E-value=5.8e-14  Score=97.75  Aligned_cols=127  Identities=11%  Similarity=-0.052  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~   86 (136)
                      .-.+=..+..+|+|+.|+-+.++++.++| +++.++.+|.++...|++++|+..+++.. ..+.++......|.++...+
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID   87 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC
Confidence            33445566778999999999999999999 78888999999999999999988776542 24456666677777777777


Q ss_pred             Chhhhhh----------------------------------hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           87 SGTSVCR----------------------------------CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        87 ~~~ea~~----------------------------------~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      +++++.+                                  .....+...|..+.+++.+|.+|..+|++++|+.+|++|
T Consensus        88 ~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  167 (184)
T 3vtx_A           88 EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA  167 (184)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7766642                                  211112234566778889999999999999999999999


Q ss_pred             hcc
Q 032655          133 DEF  135 (136)
Q Consensus       133 L~~  135 (136)
                      |++
T Consensus       168 l~~  170 (184)
T 3vtx_A          168 LEK  170 (184)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.57  E-value=3e-14  Score=103.16  Aligned_cols=126  Identities=13%  Similarity=0.019  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc-
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL-   85 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l-   85 (136)
                      +..+-..+...+++++|+-..++++..+| +++.++.+|.++...|++.+|+..+++. .+.|.++..++.+|.++..+ 
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~   87 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY   87 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence            34455566778889999999999998888 7888888899999999999998888664 34667788888889999888 


Q ss_pred             ----------cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 ----------RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 ----------~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                                |++++|++.....+...|..+.+++.+|.+|..+|++++|+.+|++|++
T Consensus        88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  146 (217)
T 2pl2_A           88 RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA  146 (217)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence                      8888887654433322333444555666666666666666666666654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.56  E-value=5.6e-14  Score=97.86  Aligned_cols=98  Identities=7%  Similarity=-0.010  Sum_probs=79.2

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh------------------h-
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV------------------M-   97 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~------------------~-   97 (136)
                      ++.-.+.+|.+++..|+|++|+..+++. .++|.++.+++.+|.|+.++|++++|++...                  . 
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            4555778999999999999999988664 4578899999999999999999999864210                  0 


Q ss_pred             -----------hh----cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           98 -----------LR----LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        98 -----------~~----~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                                 ..    ...|....++..+|.+|..+|++++|+++|++++++
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~  136 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI  136 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence                       00    123455667889999999999999999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.54  E-value=1.7e-14  Score=96.87  Aligned_cols=105  Identities=11%  Similarity=-0.000  Sum_probs=85.3

Q ss_pred             HHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHH
Q 032655           31 EVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAI  108 (136)
Q Consensus        31 kl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i  108 (136)
                      |+..++| ..+....+|.+++..|+|++|+..+++. .+.+.++..++.+|.|+.++|++++|++.....+.-.|..+.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            4556777 5667888999999999999999988664 4577888999999999999999999988665544333455667


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          109 CFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++.+|.+|..+|++++|+++|++||++
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            889999999999999999999999875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.52  E-value=2.3e-13  Score=97.89  Aligned_cols=129  Identities=12%  Similarity=0.079  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      +.+...-..+...++|+.|+-+.++++.+.|  ++..++.+|.|++..|+|.+|+..+++. ...+.++.+++.+|.++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            3455566678889999999999999999996  6778899999999999999999988664 446678889999999999


Q ss_pred             HccChhhhhhhhhhhhc--ccc-----hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           84 ELRSGTSVCRCSVMLRL--LKM-----ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~--~~~-----~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+|++++|++.....+.  +..     ..+.+++.+|.++..+|++++|+++|++|+++
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  146 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV  146 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence            99999999876543322  211     13366889999999999999999999999975

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.50  E-value=1.8e-14  Score=99.10  Aligned_cols=118  Identities=8%  Similarity=0.006  Sum_probs=95.8

Q ss_pred             HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhh
Q 032655           18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCS   95 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~   95 (136)
                      .+++++.|+-...+++...| ++...+.+|.+|+..|+|++|+..+++. .+.+.++.+++.+|.|+.++|++++|+...
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~   88 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY   88 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence            35678889988899888888 6777889999999999999999988664 457788899999999999999999998876


Q ss_pred             hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHH-HHhhcc
Q 032655           96 VMLRLLKMISSAICFLRGKAYEALGNCAQARLWL-VSCDEF  135 (136)
Q Consensus        96 ~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y-~~AL~~  135 (136)
                      ...+...|....+++.+|.+|..+|++++|++.| ++|+++
T Consensus        89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l  129 (150)
T 4ga2_A           89 RRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL  129 (150)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            6544444556677888999999999988877664 788864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.49  E-value=2.2e-13  Score=98.50  Aligned_cols=124  Identities=13%  Similarity=0.020  Sum_probs=103.0

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc-----------CChHHHHHHHhcC-cccccCcchHHH
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLG-----------RHYRRPFHLLNSS-KIVLRDLRFRYL   77 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~-----------g~~~~A~~~l~~~-~l~~~~~~~~~l   77 (136)
                      .+-.-+...++++.|+-..++++.++| +++.++.+|.++...           |++.+|+..+++. .+.+.++..++.
T Consensus        44 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~  123 (217)
T 2pl2_A           44 WLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ  123 (217)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            344556778999999999999999999 788899999999999           9999999988665 446788899999


Q ss_pred             HHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           78 AAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        78 ~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|.++..+|++++|++.....+... ....+++.+|.+|..+|++++|+.+|+++|++
T Consensus       124 lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999987654432211 35667788999999999999999999998863

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.49  E-value=2.3e-13  Score=97.85  Aligned_cols=129  Identities=12%  Similarity=0.002  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHH----------------HHHHHhccCChHHHHHHHhcC-ccc
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYM----------------QAQALFLGRHYRRPFHLLNSS-KIV   68 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~----------------la~~l~~~g~~~~A~~~l~~~-~l~   68 (136)
                      +.+-......+..++|+.|+-+.++++..+| +++.+++                +|.++...|+|++|+..+++. .+.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            3444455566789999999999999999999 7788888                999999999999999988665 446


Q ss_pred             ccCcchHHHHHHHHHHccChhhhhhhhhhh--------------------------------hc---ccchHhHHHHHHH
Q 032655           69 LRDLRFRYLAAKCLEELRSGTSVCRCSVML--------------------------------RL---LKMISSAICFLRG  113 (136)
Q Consensus        69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~--------------------------------~~---~~~~~a~i~~l~G  113 (136)
                      |.++..++.+|.++..+|++++|+......                                ..   ..+.....++.+|
T Consensus        85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g  164 (208)
T 3urz_A           85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG  164 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            788999999999999999999996421100                                00   1122334567889


Q ss_pred             HHHHHcCChHHHHHHHHHhhcc
Q 032655          114 KAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       114 ~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .++..+|++++|+.+|++|+++
T Consensus       165 ~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999999975

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.48  E-value=8e-13  Score=93.60  Aligned_cols=128  Identities=7%  Similarity=-0.076  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~   84 (136)
                      ...+..+-..+...++|+.|+...++++  .|++..++.+|.+++..|+|.+|+..+++. .+.+.++.+++.+|.++..
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            3345566777888999999999999985  668889999999999999999999988664 3456788899999999999


Q ss_pred             ccChhhhhhhhhhhhc----------------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           85 LRSGTSVCRCSVMLRL----------------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        85 l~~~~ea~~~~~~~~~----------------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|+|++|++.....+.                ..|....+++.+|.+|..+|++++|+.+|++++++
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            9999999875433221                12345678899999999999999999999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.48  E-value=4.1e-13  Score=113.94  Aligned_cols=128  Identities=10%  Similarity=-0.035  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l   85 (136)
                      -+..+=.-+..+|++++|+-..++++.++| +++.++.+|.+|...|++++|+..+++. .+.+.+..+++.+|.++.++
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~   90 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM   90 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            344555667789999999999999999999 7888999999999999999999988664 45678889999999999999


Q ss_pred             cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |++++|++.....+.-.|..+.+++.+|.+|..+|++++|+++|++||++
T Consensus        91 g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A           91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999988766544444556677888999999999999999999998874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.48  E-value=8.9e-13  Score=85.25  Aligned_cols=127  Identities=14%  Similarity=0.099  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~   86 (136)
                      ...+...+...++++.|+.+.++++...| ++..++.+|.++...|++++|..++++.. ..+.++...+.+|.++...|
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence            34566777889999999999999999998 77788999999999999999999886643 34566778899999999999


Q ss_pred             ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++++|.+.........|....+++.+|.++..+|+.++|..+|+++++.
T Consensus        84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            9999987655433323344567788999999999999999999999864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.47  E-value=4.9e-13  Score=97.51  Aligned_cols=127  Identities=11%  Similarity=-0.076  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcc----hHHHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLR----FRYLAAKCLE   83 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~----~~~l~a~c~~   83 (136)
                      +-.....+...++++.|+-..++++..+| +++.++.+|.+++..|+|++|+..+++..-.+.++.    +++.+|.++.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            34455677889999999999999999999 777899999999999999999998866432233333    3899999999


Q ss_pred             HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+|++++|++.....+...|....++..+|.+|..+|++++|+.+|++++++
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence            9999999988665544333445567788899999999999999999988864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.47  E-value=1.3e-12  Score=89.08  Aligned_cols=126  Identities=13%  Similarity=0.052  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +..+...+...++++.|+.+.++++...| ++..++.+|.++...|++++|+..+++. ...+.++.+.+.+|.++...|
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   90 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ   90 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence            33444444555555555555555555555 4444555555555555555555544332 112334445555555555555


Q ss_pred             Chhhh----------------------------------hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           87 SGTSV----------------------------------CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        87 ~~~ea----------------------------------~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      ++++|                                  .+.....+...|....+++.+|.++..+|++++|..+|+++
T Consensus        91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A           91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555                                  33222212122334556677788888888888888888877


Q ss_pred             hc
Q 032655          133 DE  134 (136)
Q Consensus       133 L~  134 (136)
                      ++
T Consensus       171 ~~  172 (186)
T 3as5_A          171 NE  172 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.46  E-value=1.5e-13  Score=94.47  Aligned_cols=108  Identities=12%  Similarity=0.124  Sum_probs=86.6

Q ss_pred             HHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchH
Q 032655           28 FANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMIS  105 (136)
Q Consensus        28 ~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~  105 (136)
                      ..++++.++| +++.++.+|.+++..|+|.+|+..+++. .+.+.++..++.+|.|+..+|+|++|++.....+...|..
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            4567788888 6778888999999999999999888664 3366788888999999999999999987665544333455


Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          106 SAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ...++.+|.+|..+|++++|+.+|++++++
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            667788899999999999999999998863

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.44  E-value=1.3e-12  Score=89.14  Aligned_cols=95  Identities=12%  Similarity=-0.062  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhh-------------------
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR-------------------   99 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~-------------------   99 (136)
                      ..++.+|.+++..|++.+|+..+++.. ..+.++.+.+.+|.++...|++++|.+......                   
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            457778999999999999999997753 355778899999999999999999964321110                   


Q ss_pred             ---------------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655          100 ---------------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       100 ---------------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                                     ...|....+++.+|.++..+|++++|+.+|+++++
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  138 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG  138 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence                           01233445566777777777777777777777664

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.44  E-value=1.9e-12  Score=92.50  Aligned_cols=124  Identities=11%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      +..-+...++++.|+...++++...| ++..++.+|.++...|++++|+..+++. ...+.++...+.+|.++...|+++
T Consensus        63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  142 (243)
T 2q7f_A           63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPK  142 (243)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence            33444445555555555555555555 4444555555555555555555544332 122334445555555555555555


Q ss_pred             hh----------------------------------hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           90 SV----------------------------------CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        90 ea----------------------------------~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|                                  ++.....+...|....+++.+|.+|..+|++++|..+|++++++
T Consensus       143 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            54                                  33322222222444567778899999999999999999988764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.9e-12  Score=92.98  Aligned_cols=130  Identities=11%  Similarity=-0.037  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhc--------------------------cCC-ChHHHHHHHHHHhccCChHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAA--------------------------LTN-DPADVYMQAQALFLGRHYRRP   58 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~--------------------------~~~-~~~~~~~la~~l~~~g~~~~A   58 (136)
                      ..-+..+..-+...+++++|+-+.++++.                          ..| ++..++.+|.+++..|+|.+|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            34455666777788999999999999888                          455 456688999999999999999


Q ss_pred             HHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           59 FHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        59 ~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +..+++. ...+.++.+++.+|.++..+|++++|+......+...|.....++.+|.+|..+|++++|+.+|++++++
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            9988765 3356788899999999999999999988665544334555677889999999999999999999999864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.43  E-value=4.1e-12  Score=89.42  Aligned_cols=127  Identities=8%  Similarity=-0.078  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l   85 (136)
                      -+..+...+...++++.|+-+.++++...| ++..++.+|.++...|++++|+..+++.. ..+.+....+.+|.++...
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~   89 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR   89 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            345556666777777777777777777777 56667777777777777777777665532 2445666777777777777


Q ss_pred             -cChhhhhhhhhhhhc--ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 -RSGTSVCRCSVMLRL--LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 -~~~~ea~~~~~~~~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                       |++++|++.....+.  ..|....+++.+|.++..+|++++|+.+|+++++
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  141 (225)
T 2vq2_A           90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA  141 (225)
T ss_dssp             TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             777777654332221  2233344455556666666666666665555553

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.43  E-value=2.8e-12  Score=94.18  Aligned_cols=129  Identities=12%  Similarity=0.058  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcCc-ccc---cCcchHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSSK-IVL---RDLRFRYLA   78 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~---~~~~~~~l~   78 (136)
                      +.+-..-..++..++|+.|+-..++++...| +   ++.++.+|.|++..|+|.+|+..+++.- +.+   ..+..++.+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l   95 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER   95 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence            4456667778889999999999999999999 5   6789999999999999999999887643 223   335678999


Q ss_pred             HHHHHH--------ccChhhhhhhhhhhhc--c-cch--------------HhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           79 AKCLEE--------LRSGTSVCRCSVMLRL--L-KMI--------------SSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        79 a~c~~~--------l~~~~ea~~~~~~~~~--~-~~~--------------~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      |.|+++        +|++++|+......+.  + .+.              .+..++.+|.+|..+|++++|+..|++++
T Consensus        96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A           96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999        9999999875543221  1 111              12223889999999999999999999998


Q ss_pred             cc
Q 032655          134 EF  135 (136)
Q Consensus       134 ~~  135 (136)
                      +.
T Consensus       176 ~~  177 (261)
T 3qky_A          176 DA  177 (261)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.43  E-value=3.3e-12  Score=102.76  Aligned_cols=131  Identities=25%  Similarity=0.331  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~   84 (136)
                      .+..+..+++.+..++++++|+.+.++++...|++.+++.+|.+++..|++.+|++++++....+.++.+++.+|.++.+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (597)
T 2xpi_A           83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK  162 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            34568899999999999999999999999999988999999999999999999999998875557888999999999999


Q ss_pred             ccChhhhhhhhhhhh----------------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           85 LRSGTSVCRCSVMLR----------------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        85 l~~~~ea~~~~~~~~----------------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .|++++|........                .+.+.....++.+|.+|.+.|++++|+..|+++++.
T Consensus       163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  229 (597)
T 2xpi_A          163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV  229 (597)
T ss_dssp             TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999986543110                023456788899999999999999999999999863

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.43  E-value=4.7e-12  Score=91.43  Aligned_cols=129  Identities=10%  Similarity=-0.097  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      .+-+..+...+...++++.|+-+.++++...| ++..++.+|.++...|++.+|+..+++. ...+.+....+.+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            44556666777788888888888888888888 6777888888888888888888877654 234556777888888888


Q ss_pred             HccChhhhhhhhhhhhc--ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           84 ELRSGTSVCRCSVMLRL--LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ..|++++|.+.....+.  ..|....+++.+|.+|..+|++++|+.+|+++++
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            88888888754433222  2233444555556666666666666666665554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.41  E-value=3.3e-13  Score=91.35  Aligned_cols=105  Identities=11%  Similarity=0.109  Sum_probs=64.0

Q ss_pred             HHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhH
Q 032655           30 NEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSA  107 (136)
Q Consensus        30 ekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~  107 (136)
                      ++++.++| +++.++.+|.+++..|+|.+|+..+++. ...+.++..++.+|.|+..+|+|++|+......+...|....
T Consensus         8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   87 (142)
T 2xcb_A            8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR   87 (142)
T ss_dssp             -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            44455555 4555666677777777777776666543 224556666667777777777777766654433322233445


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655          108 ICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       108 i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +++.+|.+|..+|++++|+.+|+++++
T Consensus        88 ~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           88 FPFHAAECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            556667777777777777777776664

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.41  E-value=3.9e-12  Score=94.38  Aligned_cols=120  Identities=9%  Similarity=-0.022  Sum_probs=55.4

Q ss_pred             HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-c---------ccCcchHHHHHHHHHH
Q 032655           16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-V---------LRDLRFRYLAAKCLEE   84 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~---------~~~~~~~~l~a~c~~~   84 (136)
                      +...++++.|+-+.++++...| ++..++.+|.++...|++++|+..+++..- .         +..+...+.+|.++..
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~  248 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK  248 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence            3334444444444444444444 333444444444444444444444332211 0         1223344444444444


Q ss_pred             ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|++++|.+.....+...|....+++.+|.+|..+|++++|+++|++++++
T Consensus       249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL  299 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred             hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence            444444443332222222334455566666666666666666666666653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.41  E-value=7.8e-13  Score=91.73  Aligned_cols=119  Identities=8%  Similarity=-0.045  Sum_probs=98.6

Q ss_pred             HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHH-HHHccCh--hhh
Q 032655           17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKC-LEELRSG--TSV   91 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c-~~~l~~~--~ea   91 (136)
                      ...++++.|+-..++++...| +++.++.+|.+++..|+|.+|+..+++. .+.+.++...+.+|.+ +...|++  ++|
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            457899999999999999999 7889999999999999999999988765 3456788899999999 8899999  999


Q ss_pred             hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +......+...|....+++.+|.+|..+|++++|+.+|++++++
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            87665444334455677889999999999999999999999875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.41  E-value=4.4e-12  Score=85.78  Aligned_cols=131  Identities=11%  Similarity=-0.007  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHH
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKC   81 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c   81 (136)
                      +..+.+..+...+...++|+.|+.+.++++...| ++..++.+|.++...|+|.+|+..+++. .+.+.++..++.+|.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            3455677778888899999999999999999999 7888999999999999999999988664 3456788899999999


Q ss_pred             HHHccChhhhhhhhhhhhc--ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           82 LEELRSGTSVCRCSVMLRL--LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        82 ~~~l~~~~ea~~~~~~~~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +..+|++++|.......+.  +........+.+|..+.++|++++|+..|.++..
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            9999999999876654332  2222333334556669999999999999998754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.41  E-value=2.6e-12  Score=92.31  Aligned_cols=124  Identities=8%  Similarity=-0.076  Sum_probs=105.8

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCc-------chHHHHHHHH
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDL-------RFRYLAAKCL   82 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~-------~~~~l~a~c~   82 (136)
                      +-.-+...++++.|+-+.++++..+| ++..++.+|.++...|+|++|+..+++. .+.+.++       .+++..|.++
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  127 (228)
T 4i17_A           48 CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF  127 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence            44556778999999999999999999 6778999999999999999999988764 3355666       6689999999


Q ss_pred             HHccChhhhhhhhhhhhcccch--HhHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHhh
Q 032655           83 EELRSGTSVCRCSVMLRLLKMI--SSAICFLRGKAYEALGNC---------------------------AQARLWLVSCD  133 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~~~~~~~~--~a~i~~l~G~~~~~~~~~---------------------------~~A~~~y~~AL  133 (136)
                      ..+|++++|++.....+...|.  .+.+++.+|.+|..+|+.                           ++|+.+|++|+
T Consensus       128 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  207 (228)
T 4i17_A          128 QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAV  207 (228)
T ss_dssp             HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999877665544566  678888999999999988                           99999999998


Q ss_pred             cc
Q 032655          134 EF  135 (136)
Q Consensus       134 ~~  135 (136)
                      ++
T Consensus       208 ~l  209 (228)
T 4i17_A          208 TL  209 (228)
T ss_dssp             HH
T ss_pred             hc
Confidence            74

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=2.2e-12  Score=101.90  Aligned_cols=120  Identities=6%  Similarity=-0.091  Sum_probs=86.6

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC-hHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH-YRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~-~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      -+...++++.|+-..++++.++| ++..++.+|.++...|+ +++|+..+++. .+.+.+..+++.+|.++..+|++++|
T Consensus       106 ~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eA  185 (382)
T 2h6f_A          106 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE  185 (382)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             HHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Confidence            34567888888888888888888 67788888888888886 88888887654 34667888888888888888888888


Q ss_pred             hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +......+...|....+++.+|.++..+|++++|+.+|.+||+
T Consensus       186 l~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~  228 (382)
T 2h6f_A          186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  228 (382)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            7655443333334445556666666666666666666666654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.2e-11  Score=88.66  Aligned_cols=130  Identities=13%  Similarity=0.007  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC-------cchHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD-------LRFRY   76 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~-------~~~~~   76 (136)
                      ..+.+..+-..+...++|++|+-+.++++...+++..++.+|.+++..|+|++|+..+++.. +.+.+       +.+.+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            34567777788888899999999999988877777788888999999999999988886643 23333       57888


Q ss_pred             HHHHHHHHccChhhhhhhhhhh--------------------------hcccchHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655           77 LAAKCLEELRSGTSVCRCSVML--------------------------RLLKMISSAICFLRGKAYEALGNCAQARLWLV  130 (136)
Q Consensus        77 l~a~c~~~l~~~~ea~~~~~~~--------------------------~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~  130 (136)
                      .+|.++..+|++++|++.....                          ....|..+.+++.+|.++..+|++++|+.+|+
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  163 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT  163 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            8999999999998886422110                          00224455556666777777777777777776


Q ss_pred             Hhhc
Q 032655          131 SCDE  134 (136)
Q Consensus       131 ~AL~  134 (136)
                      ++++
T Consensus       164 ~a~~  167 (258)
T 3uq3_A          164 EMIK  167 (258)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6664

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=99.38  E-value=1.6e-12  Score=92.22  Aligned_cols=105  Identities=20%  Similarity=0.282  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChH---------HHHHHHHHHhccCChHHHHHHHhc----CcccccCc--
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPA---------DVYMQAQALFLGRHYRRPFHLLNS----SKIVLRDL--   72 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~---------~~~~la~~l~~~g~~~~A~~~l~~----~~l~~~~~--   72 (136)
                      |+++|+..++.++|++|++.++.++++.+ +++         ..+++|.++|..|+|.+|...+++    .+..++++  
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            67888888899999999999999999985 333         579999999999999999998876    22211111  


Q ss_pred             --------------------chHHHHHHHHHHccChhhhhhhhhhhhcccch---HhHHHHHHHHHHH
Q 032655           73 --------------------RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMI---SSAICFLRGKAYE  117 (136)
Q Consensus        73 --------------------~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~---~a~i~~l~G~~~~  117 (136)
                                          +++|.+|.|+.++|++++|+...+    ++|.   ...|..++|++|+
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le----~Ip~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD----GIPSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH----TSCGGGCCHHHHHHHHHHCC
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh----cCCchhcCHHHHHHHHHHhc
Confidence                                699999999999999999988665    3332   4457889999885

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.37  E-value=1e-11  Score=88.72  Aligned_cols=86  Identities=9%  Similarity=-0.096  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +..+...+...++++.|+.+.++++...| ++..++.+|.+++..|++.+|+..+++. ...+.+..+.+.+|.++..+|
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  105 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE  105 (243)
T ss_dssp             ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence            44556667889999999999999999999 7888999999999999999999988764 335567889999999999999


Q ss_pred             Chhhhhhh
Q 032655           87 SGTSVCRC   94 (136)
Q Consensus        87 ~~~ea~~~   94 (136)
                      ++++|.+.
T Consensus       106 ~~~~A~~~  113 (243)
T 2q7f_A          106 MYKEAKDM  113 (243)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence            99999754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.37  E-value=1.2e-11  Score=91.64  Aligned_cols=121  Identities=7%  Similarity=0.021  Sum_probs=69.8

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC-ChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGR-HYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g-~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      .-+...+++++|+.++++++...| ++..++.+|.++...| ++.+|+..+++. .+.+.++.+++.+|.++...|++++
T Consensus        64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  143 (330)
T 3hym_B           64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ  143 (330)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence            344555666666666666666666 5566666666666666 666666665443 2344555666666666666666666


Q ss_pred             hhhhhhh----------------------------------hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           91 VCRCSVM----------------------------------LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        91 a~~~~~~----------------------------------~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |++....                                  .+...|....+++.+|.+|..+|++++|+.+|+++++
T Consensus       144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            6432111                                  0112233445555666666666666666666666654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=2.2e-12  Score=84.88  Aligned_cols=113  Identities=16%  Similarity=-0.025  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~   84 (136)
                      +.+...-..+...++|+.|+-+.++++.++| ++..++.+|.|++..|+|.+|+..+++. .+.+.++..++.+|.|+..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3455555666667777777777777777777 5666777777777777777777766443 3345566667777777777


Q ss_pred             ccChhhhhhhhhhhhc------ccchHhHHHHHHHHHHHHc
Q 032655           85 LRSGTSVCRCSVMLRL------LKMISSAICFLRGKAYEAL  119 (136)
Q Consensus        85 l~~~~ea~~~~~~~~~------~~~~~a~i~~l~G~~~~~~  119 (136)
                      +|++++|++.....+.      ..|....+...++.+.+++
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            7777777654433222      1255555555666665543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=3.6e-12  Score=106.85  Aligned_cols=125  Identities=14%  Similarity=-0.027  Sum_probs=108.8

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      ..+..-++..++++.|+-..++++.++| +++.++.+|.+++..|+|++|+..+++. .+.+.++..++.+|.++.++|+
T Consensus       437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~  516 (681)
T 2pzi_A          437 LMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN  516 (681)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence            3444567788999999999999999999 7889999999999999999999988765 4577899999999999999999


Q ss_pred             hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |++ ++.....+...|....+++.+|.+|.++|++++|+.+|++|+++
T Consensus       517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  563 (681)
T 2pzi_A          517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT  563 (681)
T ss_dssp             CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred             hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence            999 87666544444556678899999999999999999999999874

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.35  E-value=2.3e-11  Score=85.52  Aligned_cols=126  Identities=4%  Similarity=-0.181  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc-CChHHHHHHHhcCcc---cccCcchHHHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLG-RHYRRPFHLLNSSKI---VLRDLRFRYLAAKCLE   83 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~-g~~~~A~~~l~~~~l---~~~~~~~~~l~a~c~~   83 (136)
                      +..+..-+...++++.|+.+.++++...| ++..++.+|.++... |++++|+..+++..-   .+.....++..|.++.
T Consensus        45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (225)
T 2vq2_A           45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA  124 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence            34455667788999999999999999999 778899999999999 999999998866432   2334578899999999


Q ss_pred             HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ..|++++|++.....+...|....+++.+|.++..+|++++|...|+++++
T Consensus       125 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  175 (225)
T 2vq2_A          125 KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS  175 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999998765443332334456677888888888999999888888875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.35  E-value=2.2e-11  Score=90.88  Aligned_cols=130  Identities=9%  Similarity=-0.086  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      ++.+..+...+...++|++|+-..++++...| +++.++.+|.+++..|++.+|+..+++. .+.+.++.+++.+|.++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            34566777888899999999999999999999 7889999999999999999999988664 335678899999999999


Q ss_pred             HccChhhhhhhhhhhhcccc---hHhHHHHH------------HHHHHHHcCChHHHHHHHHHhhcc
Q 032655           84 ELRSGTSVCRCSVMLRLLKM---ISSAICFL------------RGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~---~~a~i~~l------------~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..|++++|.......+...|   .....+..            +|.++...|++++|+.+|.++++.
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  149 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV  149 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999876554333223   33333333            389999999999999999998863

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.34  E-value=4.1e-11  Score=86.97  Aligned_cols=130  Identities=13%  Similarity=-0.087  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~   83 (136)
                      ..-+..+..-+...++++.|+-+.++++..+| ++..++.+|.++...|+|++|+..+++.. +.+.++..++.+|.++.
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  122 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  122 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence            34456667778889999999999999999999 78889999999999999999999886653 35678899999999999


Q ss_pred             HccChhhhhhhhh---------------------------------h--h------------------------h-----
Q 032655           84 ELRSGTSVCRCSV---------------------------------M--L------------------------R-----   99 (136)
Q Consensus        84 ~l~~~~ea~~~~~---------------------------------~--~------------------------~-----   99 (136)
                      .+|++++|.+...                                 .  .                        .     
T Consensus       123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  202 (275)
T 1xnf_A          123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA  202 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999853100                                 0  0                        0     


Q ss_pred             --cccc----hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          100 --LLKM----ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       100 --~~~~----~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                        ...|    ..+.+++.+|.+|..+|++++|+.+|++++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          203 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence              0001    12567789999999999999999999999875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.34  E-value=3.9e-11  Score=86.53  Aligned_cols=124  Identities=8%  Similarity=-0.068  Sum_probs=79.6

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHHHc
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~~l   85 (136)
                      ..+..-+...++++.|+-+.++++...| ++..++.+|.+++..|++++|+.++++..   ..+.+....+.+|.++...
T Consensus        75 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  154 (252)
T 2ho1_A           75 AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM  154 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc
Confidence            3455566777888888888888888888 66777888888888888888888775542   2344566778888888888


Q ss_pred             cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      |++++|.+.....+...|....+++.+|.+|..+|++++|..+|++++
T Consensus       155 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  202 (252)
T 2ho1_A          155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA  202 (252)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888888654332211112223333444444444444444444444444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.33  E-value=1.9e-11  Score=93.81  Aligned_cols=120  Identities=13%  Similarity=-0.077  Sum_probs=67.8

Q ss_pred             HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655           16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      +...++++.|+-+.++++...| +++.++.+|.++...|++++|+..+++. .+.+.++..++.+|.++.+.|++++|.+
T Consensus       247 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  326 (388)
T 1w3b_A          247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR  326 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            3444555555555555555554 3444444555555555555555544332 1233444444555555555555555544


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .....+...|....+++.+|.+|.++|++++|+.+|++++++
T Consensus       327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            333222233555667888899999999999999999998864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.33  E-value=1.2e-11  Score=82.85  Aligned_cols=111  Identities=12%  Similarity=0.011  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~   82 (136)
                      ..+..+..=..+..+|+|+.|+...++++.++| ++..++.+|.|++..|++++|+..+++. .+++.++.+++.+|.|+
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            345566666778899999999999999999999 8889999999999999999999988664 45778899999999999


Q ss_pred             HHccChhhhhhhhhhhhcccchHhHHHHHHHHH
Q 032655           83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKA  115 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~  115 (136)
                      ..+|+|++|++.....+.-.|....+...+|.+
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999987655443334444455555655

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.33  E-value=1.4e-11  Score=91.28  Aligned_cols=127  Identities=13%  Similarity=-0.013  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +..+..-+...++++.|+.+.++++...| ++..++.+|.++...|++++|+..+++. ...+.++.+++.+|.++..+|
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            44455667788999999999999999988 6778888999999999999999888664 335567788899999999999


Q ss_pred             Chhhhhhhhhhhhcccch------------HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           87 SGTSVCRCSVMLRLLKMI------------SSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        87 ~~~ea~~~~~~~~~~~~~------------~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++++|.......+...|.            ...++..+|.++..+|+.++|...|+++++.
T Consensus       255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            999987654432211111            5667788999999999999999999888753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.33  E-value=4.5e-11  Score=90.02  Aligned_cols=126  Identities=11%  Similarity=-0.023  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc--------------------
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI--------------------   67 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--------------------   67 (136)
                      +..+-..++..|+++.|+-..++++..+| +++..+.+|.++...|++++|+..+++..-                    
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~  199 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA  199 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence            44556677889999999999999999999 888999999999999999999998877521                    


Q ss_pred             ---------------cccCcchHHHHHHHHHHccChhhhhhhhhhhhc--ccchHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655           68 ---------------VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL--LKMISSAICFLRGKAYEALGNCAQARLWLV  130 (136)
Q Consensus        68 ---------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~  130 (136)
                                     .+.++..++.+|.++...|++++|++.....+.  +......+...+|.++..+|+.++|+..|+
T Consensus       200 ~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r  279 (287)
T 3qou_A          200 ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR  279 (287)
T ss_dssp             TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence                           234567788888888888888888776543332  222346778888999999999999999999


Q ss_pred             Hhhc
Q 032655          131 SCDE  134 (136)
Q Consensus       131 ~AL~  134 (136)
                      ++|.
T Consensus       280 ~al~  283 (287)
T 3qou_A          280 RQLY  283 (287)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9885

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.33  E-value=4.2e-12  Score=96.67  Aligned_cols=124  Identities=11%  Similarity=0.045  Sum_probs=103.0

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCCC---hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTND---PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~~---~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      +..-+...++++.|+-+.++++...|+   +..++.+|.++...|++.+|+..+++. ...+.++..++.+|.++.++|+
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  262 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR  262 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            345667789999999999999999984   678999999999999999999988764 3456788899999999999999


Q ss_pred             hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +++|+......+...|....+++.+|.+|..+|++++|+.+|++|+++
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999998766544334555778889999999999999999999999864

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.32  E-value=3.7e-11  Score=78.20  Aligned_cols=116  Identities=12%  Similarity=-0.028  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      ...+..+...+...++|+.|+...++++...| ++..++.+|.+++..|++++|+..+++. ...+.++.+++.+|.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            45567777888889999999999999999998 7788999999999999999999988664 335677888999999999


Q ss_pred             HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCC
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGN  121 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~  121 (136)
                      .+|++++|.......+...|....++..+|.++..+||
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999876654433334456677888999988775

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.32  E-value=1.1e-11  Score=99.55  Aligned_cols=123  Identities=10%  Similarity=-0.026  Sum_probs=80.1

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhcc---------CChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLG---------RHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL   82 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~---------g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~   82 (136)
                      -.-+...++++.|+-+.++++.++|++..++.+|.++...         |++++|+..+++. .+.+.+...++.+|.++
T Consensus       144 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  223 (474)
T 4abn_A          144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY  223 (474)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3344555666666666666666666655566666666666         6666666655443 23445556666666666


Q ss_pred             HHc--------cChhhhhhhhhhhhcccc---hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           83 EEL--------RSGTSVCRCSVMLRLLKM---ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        83 ~~l--------~~~~ea~~~~~~~~~~~~---~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+        |++++|++.....+...|   ..+.+++.+|.+|..+|++++|+++|++|+++
T Consensus       224 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666        666666654433222234   56778889999999999999999999999864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.32  E-value=1e-11  Score=105.37  Aligned_cols=123  Identities=6%  Similarity=-0.125  Sum_probs=108.4

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      -.-+..+|++++|+-..++++.++| +++.++.+|.++...|++++|+..+++. .+.+.+...++.+|.++.++|++++
T Consensus        50 g~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e  129 (723)
T 4gyw_A           50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE  129 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3445678999999999999999999 7889999999999999999999988665 4577889999999999999999999


Q ss_pred             hhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           91 VCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        91 a~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |++.....+.-.|..+.+++.+|.+|..+|+.++|.+.|++++++
T Consensus       130 Ai~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l  174 (723)
T 4gyw_A          130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence            998776555444566778899999999999999999999999864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.31  E-value=1.1e-11  Score=82.81  Aligned_cols=95  Identities=8%  Similarity=0.019  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhh--hc-----ccchHhHHHHHH
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVML--RL-----LKMISSAICFLR  112 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~--~~-----~~~~~a~i~~l~  112 (136)
                      ....+|.+++..|+|++|+..++++ .++|.++.+++.+|.|++++|+|++|++.....  ++     ..+..+.+++.+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            3556899999999999999988654 456788888999999999999999998754322  11     123356678899


Q ss_pred             HHHHHHcCChHHHHHHHHHhhcc
Q 032655          113 GKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       113 G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |.+|..+|++++|+++|++||+.
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999999999863

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.30  E-value=1.7e-11  Score=92.66  Aligned_cols=126  Identities=13%  Similarity=-0.060  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +..+..-+...++++.|+-+.++++...| ++..++.+|.++...|++.+|+..+++. .+.+.++.+++.+|.++.++|
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  299 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG  299 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            34455666677888888888888888887 6677788888888888888888877654 334566777888888888888


Q ss_pred             Chhhhhhhhhhhhc--c---------cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           87 SGTSVCRCSVMLRL--L---------KMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        87 ~~~ea~~~~~~~~~--~---------~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++++|.+.....+.  +         .+....++..+|.+|..+|+.++|..+++++|+
T Consensus       300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  358 (368)
T 1fch_A          300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS  358 (368)
T ss_dssp             CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence            88888764432211  0         112256777888888888888888888887775

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.30  E-value=1.3e-11  Score=81.57  Aligned_cols=97  Identities=14%  Similarity=0.078  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                      +++.++.+|.+++..|+|.+|+..+++. ...+.++.+++.+|.|+..+|+|++|+......+...|....+++.+|.+|
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            4556666666677777776666666443 224455666666677777777776666544333222233445566667777


Q ss_pred             HHcCChHHHHHHHHHhhc
Q 032655          117 EALGNCAQARLWLVSCDE  134 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~  134 (136)
                      ..+|++++|+.+|+++++
T Consensus        88 ~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            777777777777766664

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.30  E-value=4.3e-11  Score=86.57  Aligned_cols=128  Identities=6%  Similarity=-0.092  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch---HHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcc---hHHHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP---ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLR---FRYLAA   79 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~---~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~---~~~l~a   79 (136)
                      .+-.....++..++|+.|+-..++++...| ++   +.++.+|.+++..|+|.+|+..+++.- ..+.++.   +++..|
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g   85 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG   85 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence            344556678889999999999999999998 43   579999999999999999999887642 3445554   789999


Q ss_pred             HHHHH------------------ccChhhhhhhhhhhhcccc-----------------hHhHHHHHHHHHHHHcCChHH
Q 032655           80 KCLEE------------------LRSGTSVCRCSVMLRLLKM-----------------ISSAICFLRGKAYEALGNCAQ  124 (136)
Q Consensus        80 ~c~~~------------------l~~~~ea~~~~~~~~~~~~-----------------~~a~i~~l~G~~~~~~~~~~~  124 (136)
                      .|+++                  .|++++|+......+...|                 ..+...+.+|.+|.+.|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~  165 (225)
T 2yhc_A           86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA  165 (225)
T ss_dssp             HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            99987                  5688888765433221111                 111223678999999999999


Q ss_pred             HHHHHHHhhcc
Q 032655          125 ARLWLVSCDEF  135 (136)
Q Consensus       125 A~~~y~~AL~~  135 (136)
                      |+..|+++++.
T Consensus       166 A~~~~~~~l~~  176 (225)
T 2yhc_A          166 VVNRVEGMLRD  176 (225)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998863

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.30  E-value=5.2e-11  Score=76.80  Aligned_cols=118  Identities=13%  Similarity=-0.029  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~   82 (136)
                      ....+..+...+...++++.|+.+.++++...| ++..++.+|.++...|++.+|+..+++. ...+.++.+++.+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            345566777888889999999999999999999 7888999999999999999999988664 33567788999999999


Q ss_pred             HHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCCh
Q 032655           83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNC  122 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~  122 (136)
                      ..+|++++|.......+...|....++..+|.++..+|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999998765543333344556778999999998875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.30  E-value=3.3e-11  Score=91.66  Aligned_cols=127  Identities=8%  Similarity=-0.050  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +-.+...+...++++.|+-+.++++...| ++..++.+|.++...|+|.+|+..+++. .+.+.++.+++.+|.++..+|
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence            34456677788999999999999999999 7888999999999999999999988765 345677889999999999999


Q ss_pred             Chhhhhhhhhhh--------------------------------------------hcccch--HhHHHHHHHHHHHHcC
Q 032655           87 SGTSVCRCSVML--------------------------------------------RLLKMI--SSAICFLRGKAYEALG  120 (136)
Q Consensus        87 ~~~ea~~~~~~~--------------------------------------------~~~~~~--~a~i~~l~G~~~~~~~  120 (136)
                      ++++|++.....                                            +...|.  .+.+++.+|.+|..+|
T Consensus       148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG  227 (365)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence            999986421100                                            001122  4667788899999999


Q ss_pred             ChHHHHHHHHHhhcc
Q 032655          121 NCAQARLWLVSCDEF  135 (136)
Q Consensus       121 ~~~~A~~~y~~AL~~  135 (136)
                      ++++|+.+|+++++.
T Consensus       228 ~~~~A~~~~~~al~~  242 (365)
T 4eqf_A          228 EFNRAIDAFNAALTV  242 (365)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998864

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.29  E-value=2.1e-11  Score=83.64  Aligned_cols=110  Identities=12%  Similarity=0.026  Sum_probs=92.6

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      +-.-+...++|+.|+-+.++++.++| +++.++.+|.|+...|++++|+..+++. .+.+.++..++.+|.++.++|+++
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence            44557788999999999999999999 8899999999999999999999988664 457789999999999999999999


Q ss_pred             hhhhhh-hhhhcccchHhHHHHHHHHHHHHcCC
Q 032655           90 SVCRCS-VMLRLLKMISSAICFLRGKAYEALGN  121 (136)
Q Consensus        90 ea~~~~-~~~~~~~~~~a~i~~l~G~~~~~~~~  121 (136)
                      +|.... ...+.-.|..+.++.++++++...|.
T Consensus       117 ~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          117 GRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             SHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            987643 33333335566778899999998885

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.29  E-value=1.9e-11  Score=90.52  Aligned_cols=120  Identities=9%  Similarity=-0.010  Sum_probs=102.7

Q ss_pred             HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655           16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      +...++++.|+-+.++++...| ++..++.+|.++...|++++|+..+++. ...+.++.+++.+|.++...|++++|.+
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  227 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD  227 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            5667889999999999999999 7888999999999999999999988764 3356778899999999999999999987


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .....+...|....+++.+|.+|..+|++++|+.+|+++++.
T Consensus       228 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM  269 (327)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            665433333445667889999999999999999999999863

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.29  E-value=3.8e-11  Score=97.63  Aligned_cols=127  Identities=9%  Similarity=-0.064  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +..+-.-+...+++++|+-..++++.+.| +++.++.+|.++...|++++|+..+++. .+.+.+...++.+|.++.++|
T Consensus        26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  105 (568)
T 2vsy_A           26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG  105 (568)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            44556667788999999999999999999 7888999999999999999999988664 346678889999999999999


Q ss_pred             ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc---CChHHHHHHHHHhhcc
Q 032655           87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL---GNCAQARLWLVSCDEF  135 (136)
Q Consensus        87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~---~~~~~A~~~y~~AL~~  135 (136)
                      ++++|.+.....+...|....+++.+|.++..+   |+.++|.+.|+++++.
T Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            999998866554433344567788999999999   9999999999999864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.29  E-value=1.6e-11  Score=96.93  Aligned_cols=120  Identities=6%  Similarity=-0.064  Sum_probs=103.9

Q ss_pred             HHHcCC-hhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhh
Q 032655           16 CVSKHL-YSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        16 ~l~~~~-~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      +...++ ++.|+-+.++++.++| ++..++.+|.++...|+|.+|+..+++. .+++.+..+++.+|.++..+|++++|+
T Consensus       141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl  220 (382)
T 2h6f_A          141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL  220 (382)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence            445686 9999999999999999 8889999999999999999999988665 457889999999999999999999999


Q ss_pred             hhhhhhhcccchHhHHHHHHHHHHHH-cCChHHH-----HHHHHHhhcc
Q 032655           93 RCSVMLRLLKMISSAICFLRGKAYEA-LGNCAQA-----RLWLVSCDEF  135 (136)
Q Consensus        93 ~~~~~~~~~~~~~a~i~~l~G~~~~~-~~~~~~A-----~~~y~~AL~~  135 (136)
                      +.....+...|....+++.+|.++.. .|..++|     +.+|++||++
T Consensus       221 ~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l  269 (382)
T 2h6f_A          221 QYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL  269 (382)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            87766555456677889999999999 5554888     5999999864

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.28  E-value=2.6e-11  Score=88.96  Aligned_cols=127  Identities=13%  Similarity=-0.021  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhc--------cCChHHHHHHHhcCc-ccccCcchH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFL--------GRHYRRPFHLLNSSK-IVLRDLRFR   75 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~--------~g~~~~A~~~l~~~~-l~~~~~~~~   75 (136)
                      +-.+-.-+...++|+.|+-+.++++...| +   ++.++.+|.|++.        .|++.+|+..+++.. ..+.++...
T Consensus        55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           55 QFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            33445567788999999999999999988 3   4468999999999        999999999887643 244555555


Q ss_pred             -----------------HHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHHHHHHHHHHc----------CChHHH
Q 032655           76 -----------------YLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICFLRGKAYEAL----------GNCAQA  125 (136)
Q Consensus        76 -----------------~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~l~G~~~~~~----------~~~~~A  125 (136)
                                       +.+|.++++.|+|++|+......+.   ..+....+++.+|.+|..+          |++++|
T Consensus       135 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A  214 (261)
T 3qky_A          135 DATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA  214 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence                             8889999999999999986654333   2233667888999999988          899999


Q ss_pred             HHHHHHhhcc
Q 032655          126 RLWLVSCDEF  135 (136)
Q Consensus       126 ~~~y~~AL~~  135 (136)
                      +..|+++++.
T Consensus       215 ~~~~~~~~~~  224 (261)
T 3qky_A          215 VELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999863

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.28  E-value=3.4e-11  Score=87.05  Aligned_cols=131  Identities=11%  Similarity=-0.104  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccC-----C----ChHHHHHHHHHHhccCChHHHHHHHhcCcc--------
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALT-----N----DPADVYMQAQALFLGRHYRRPFHLLNSSKI--------   67 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~-----~----~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--------   67 (136)
                      ...-+..+..-+...++++.|+-+.++++.+.     +    .+..+..+|.++...|++++|+.++++..-        
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            34445667777888999999999999999884     2    344688899999999999999998866432        


Q ss_pred             -cccCcchHHHHHHHHHHccChhhhhhhhhhhh--------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           68 -VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR--------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        68 -~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~--------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                       .+....+.+.+|.++..+|++++|++.....+        ...|..+.++..+|.+|..+|++++|+.+|++++++
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             14456788999999999999999987543221        124556777889999999999999999999999864

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.28  E-value=4.1e-11  Score=89.78  Aligned_cols=124  Identities=13%  Similarity=-0.027  Sum_probs=70.7

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCCC-h------HHHHHHHHHHhccCChHHHHHHHhcCc-------c-cccCcchHH
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTND-P------ADVYMQAQALFLGRHYRRPFHLLNSSK-------I-VLRDLRFRY   76 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~~-~------~~~~~la~~l~~~g~~~~A~~~l~~~~-------l-~~~~~~~~~   76 (136)
                      +...+...++++.|+...++++.+.+. +      .....+|.+|+..|+|++|+.++++..       . .+....+.+
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            333444455666666666666665431 1      124556666666666666666554432       0 112223556


Q ss_pred             HHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCC-hHHHHHHHHHhhcc
Q 032655           77 LAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGN-CAQARLWLVSCDEF  135 (136)
Q Consensus        77 l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~-~~~A~~~y~~AL~~  135 (136)
                      .+|.++.++|+|++|++.....      ....+..+.+++.+|.+|.++|+ +++|+++|++|+.+
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            6666666666666665433211      11223446677788888888885 58888888888764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.28  E-value=5.2e-11  Score=91.39  Aligned_cols=78  Identities=10%  Similarity=-0.118  Sum_probs=45.6

Q ss_pred             HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655           16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      +...++++.|+-+.++++.++| +++.++.+|.++...|++++|+..+++. .+.+.++..++.+|.++.+.|++++|++
T Consensus       179 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  258 (388)
T 1w3b_A          179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID  258 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            4455666666666666666666 4555566666666666666666655433 2244455566666666666666666643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.28  E-value=8.9e-12  Score=90.55  Aligned_cols=118  Identities=9%  Similarity=-0.143  Sum_probs=99.4

Q ss_pred             HcCChhhHHHHHHHHhccCC-----ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhh
Q 032655           18 SKHLYSSAIFFANEVAALTN-----DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~-----~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      ..++++.|+-..++++...|     ++..++.+|.+++..|++.+|+..+++. .+.+.++.+++.+|.++...|++++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            35789999999999999853     3456899999999999999999988664 34567889999999999999999999


Q ss_pred             hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++.....+...|....+++.+|.+|..+|++++|+.+|++++++
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  140 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  140 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            98665544334445678889999999999999999999999864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.27  E-value=1.7e-11  Score=84.34  Aligned_cols=90  Identities=10%  Similarity=0.018  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~   84 (136)
                      +.+..+-..+...++|+.|+-+.++++.++| ++..++.+|.|++..|+|.+|+..+++. .+.+.+...++.+|.|+..
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   91 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3444555555556666666666666666666 5555566666666666666666655443 2244555556666666666


Q ss_pred             ccChhhhhhhhh
Q 032655           85 LRSGTSVCRCSV   96 (136)
Q Consensus        85 l~~~~ea~~~~~   96 (136)
                      +|++++|++...
T Consensus        92 ~g~~~~A~~~~~  103 (164)
T 3sz7_A           92 MADYKGAKEAYE  103 (164)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHH
Confidence            666666655443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.27  E-value=2.1e-11  Score=92.23  Aligned_cols=121  Identities=11%  Similarity=0.016  Sum_probs=103.0

Q ss_pred             HHHHcCChhhHHHHHHHHhccCCC---hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTND---PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~~---~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      .....++++.|+-+.++++...|+   +..++.+|.++...|++++|+..+++. .+.+.++.+++.+|.++..+|++++
T Consensus       190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence            344789999999999999999995   567889999999999999999988764 3356778899999999999999999


Q ss_pred             hhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           91 VCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        91 a~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |++.....+...|....+++.+|.+|.++|++++|+.+|++++++
T Consensus       270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            988665443333455677889999999999999999999999864

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.27  E-value=8.5e-11  Score=87.70  Aligned_cols=125  Identities=12%  Similarity=-0.053  Sum_probs=83.1

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccc---cCcchHHHH------
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVL---RDLRFRYLA------   78 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~---~~~~~~~l~------   78 (136)
                      ..+..-+...++++.|+.+.++++...| ++..++.+|.++...|++++|+..+++. ...+   .++...+.+      
T Consensus        41 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  120 (359)
T 3ieg_A           41 YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM  120 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH
Confidence            3444556677888888888888888888 6777888888888888888888877654 2234   445555444      


Q ss_pred             ------HHHHHHccChhhhhhhhhhh----------------------------------hcccchHhHHHHHHHHHHHH
Q 032655           79 ------AKCLEELRSGTSVCRCSVML----------------------------------RLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        79 ------a~c~~~l~~~~ea~~~~~~~----------------------------------~~~~~~~a~i~~l~G~~~~~  118 (136)
                            |.++...|++++|++.....                                  +...|....+++.+|.+|..
T Consensus       121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  200 (359)
T 3ieg_A          121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ  200 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                  67777788877775432111                                  11223445556666777777


Q ss_pred             cCChHHHHHHHHHhhc
Q 032655          119 LGNCAQARLWLVSCDE  134 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL~  134 (136)
                      +|++++|+..|+++++
T Consensus       201 ~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          201 LGDHELSLSEVRECLK  216 (359)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            7777777777776664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.2e-10  Score=76.43  Aligned_cols=98  Identities=13%  Similarity=-0.033  Sum_probs=83.7

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                      +++.++.+|.+++..|+|.+|+..+++. .+.+.++.+++.+|.|+.++|+|++|++.....+...|.....++.+|.+|
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3567889999999999999999988664 446788899999999999999999999876654443455567889999999


Q ss_pred             HHcCChHHHHHHHHHhhcc
Q 032655          117 EALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+|++++|+.+|++++++
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            9999999999999999864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.26  E-value=6e-11  Score=78.80  Aligned_cols=131  Identities=13%  Similarity=0.101  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC---Ch----HHHHHHHHHHhccCChHHHHHHHhcCc-cccc------
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN---DP----ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR------   70 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~~----~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~------   70 (136)
                      ...-+..+-..+...+++++|+.+.++++.+.|   ++    ...+.+|.+++..|+|.+|+..+++.. +.+.      
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            344456677778889999999999999999876   22    257789999999999999999886642 2122      


Q ss_pred             CcchHHHHHHHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           71 DLRFRYLAAKCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        71 ~~~~~~l~a~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ...+.+.+|.++..+|++++|.+.....+      ...+..+.++..+|.+|..+|++++|..+|++++++
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            24678899999999999999987543211      122345667779999999999999999999999874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.26  E-value=4.9e-11  Score=83.12  Aligned_cols=127  Identities=9%  Similarity=-0.022  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-c-----------------
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-V-----------------   68 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~-----------------   68 (136)
                      .+-.....++..++++.|+-..++++..+| +++.++.+|.++...|++++|+..+++..- .                 
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence            344566777889999999999999999999 788899999999999999999988866421 1                 


Q ss_pred             -----------------ccCcchHHHHHHHHHHccChhhhhhhhhhhhccc--chHhHHHHHHHHHHHHcCChHHHHHHH
Q 032655           69 -----------------LRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLK--MISSAICFLRGKAYEALGNCAQARLWL  129 (136)
Q Consensus        69 -----------------~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~--~~~a~i~~l~G~~~~~~~~~~~A~~~y  129 (136)
                                       +.++..++.+|.++...|++++|.+.....+...  +....++..+|.++..+|+.++|+.+|
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence                             2244566667777777777777766544333222  223557778888888888888888888


Q ss_pred             HHhhc
Q 032655          130 VSCDE  134 (136)
Q Consensus       130 ~~AL~  134 (136)
                      +++|.
T Consensus       168 ~~al~  172 (176)
T 2r5s_A          168 RRQLY  172 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.25  E-value=2.8e-10  Score=85.18  Aligned_cols=132  Identities=11%  Similarity=-0.070  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHH-----HH-HHHHHHhccCChHHHHHHHhcCcc-cccC----
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPAD-----VY-MQAQALFLGRHYRRPFHLLNSSKI-VLRD----   71 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~-----~~-~la~~l~~~g~~~~A~~~l~~~~l-~~~~----   71 (136)
                      +....+...+...+.+++|+.|+-..++++...| .++.     ++ .+|.++...|+|.+|+..++++.- ....    
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence            4456677778899999999999999999999877 4442     33 379999999999999998866431 1111    


Q ss_pred             --cchHHHHHHHHHHccChhhhhhhhhhhh-------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           72 --LRFRYLAAKCLEELRSGTSVCRCSVMLR-------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        72 --~~~~~l~a~c~~~l~~~~ea~~~~~~~~-------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                        ..+.+.+|.++..+|+|++|++.....+       ...+..+.+++.+|.+|..+|++++|+++|.+||++
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence              2378999999999999999987544322       223456778899999999999999999999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.25  E-value=7.8e-11  Score=94.70  Aligned_cols=124  Identities=10%  Similarity=-0.070  Sum_probs=71.0

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-------cccC-cchHHHHHHHH
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-------VLRD-LRFRYLAAKCL   82 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-------~~~~-~~~~~l~a~c~   82 (136)
                      +..-+...|+++.|+.+.++++...| ++..+..+|.++...|++++|+.++++..-       .+.. ...++.+|.++
T Consensus       447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~  526 (597)
T 2xpi_A          447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY  526 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence            33444555666666666666665555 455555666666666666666665544311       1111 34555666666


Q ss_pred             HHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+.|++++|.+.....+...|....++..+|.+|..+|+.++|.++|++++++
T Consensus       527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            66666666655443322222345566677777777788888888777777653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.25  E-value=1.5e-11  Score=98.79  Aligned_cols=122  Identities=11%  Similarity=0.033  Sum_probs=103.4

Q ss_pred             HHHHHHcCCh-hhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc----
Q 032655           13 VRDCVSKHLY-SSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL----   85 (136)
Q Consensus        13 i~~~l~~~~~-~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l----   85 (136)
                      -.-+...++| +.|+-+.++++.++| +++.++.+|.+++..|+|.+|+..+++.- +.+. ...++.+|.++..+    
T Consensus       109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~  187 (474)
T 4abn_A          109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS  187 (474)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSC
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCC
Confidence            3445567899 999999999999999 78899999999999999999999887653 3334 68899999999999    


Q ss_pred             -----cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc--------CChHHHHHHHHHhhcc
Q 032655           86 -----RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL--------GNCAQARLWLVSCDEF  135 (136)
Q Consensus        86 -----~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~--------~~~~~A~~~y~~AL~~  135 (136)
                           |++++|++.....+...|....+++.+|.+|..+        |++++|+.+|++|+++
T Consensus       188 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          188 GDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence                 9999998876654443455677889999999999        9999999999999874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.25  E-value=1.2e-10  Score=84.22  Aligned_cols=130  Identities=9%  Similarity=-0.081  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccC--------C-ChHHHHHHHHHHhccCChHHHHHHHhcCc-c--------
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALT--------N-DPADVYMQAQALFLGRHYRRPFHLLNSSK-I--------   67 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~--------~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l--------   67 (136)
                      ..-+..+..-+...++++.|+-+.++++.+.        | .+..++.+|.+++..|++++|+.++++.. +        
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  164 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD  164 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4445666777888999999999999999883        3 34468889999999999999999886642 2        


Q ss_pred             cccCcchHHHHHHHHHHccChhhhhhhhhhh---------------------------------------------h---
Q 032655           68 VLRDLRFRYLAAKCLEELRSGTSVCRCSVML---------------------------------------------R---   99 (136)
Q Consensus        68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~---------------------------------------------~---   99 (136)
                      .+....+.+.+|.++..+|++++|.+.....                                             .   
T Consensus       165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (283)
T 3edt_B          165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC  244 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence            2345578899999999999999996421100                                             0   


Q ss_pred             -cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          100 -LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       100 -~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                       ...|....++..+|.+|..+|++++|..+|++|+++
T Consensus       245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             012455667779999999999999999999999975

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.24  E-value=2e-11  Score=99.28  Aligned_cols=117  Identities=9%  Similarity=-0.096  Sum_probs=84.7

Q ss_pred             cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      .++++.|+-+.++++..+| +++.++.+|.++...|+|++|+..+++. .+.+.+...++.+|.++..+|++++|.+...
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4789999999999999999 7888999999999999999999988664 4467788999999999999999999988665


Q ss_pred             hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           97 MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        97 ~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+...|.....++.+|.+|..+|++++|+++|++++++
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  120 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL  120 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            544334555678889999999999999999999999874

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.24  E-value=7.7e-11  Score=90.83  Aligned_cols=129  Identities=6%  Similarity=-0.101  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C---------------hHHHHHHHHHHhccCChHHHHHHHhcC-ccc
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D---------------PADVYMQAQALFLGRHYRRPFHLLNSS-KIV   68 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---------------~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~   68 (136)
                      ...+..+-..+...++|+.|+-..++++.+.| +               ...++.+|.|++..|+|.+|+..+++. .+.
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566667778889999999999999999999 4               367899999999999999999988665 446


Q ss_pred             ccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHH-HHHHHHhhc
Q 032655           69 LRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQA-RLWLVSCDE  134 (136)
Q Consensus        69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A-~~~y~~AL~  134 (136)
                      +.++..++.+|.++..+|+|++|+......+...|....++..+|.++..+|+.++| ...|++.+.
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999876654433444566788999999999999999 667777664

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.24  E-value=2.9e-11  Score=85.34  Aligned_cols=63  Identities=19%  Similarity=0.067  Sum_probs=54.3

Q ss_pred             chHHHHHHHHHHccChhhhhhhhhhhhcc-------cchHhHHH----HHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           73 RFRYLAAKCLEELRSGTSVCRCSVMLRLL-------KMISSAIC----FLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~~-------~~~~a~i~----~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+++..|.|+.++|+|+||++.....+.-       .|..+..+    +.+|.++..+|++++|+.+|++||++
T Consensus        58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            49999999999999999998765543332       56777888    99999999999999999999999975

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.24  E-value=6.7e-11  Score=93.62  Aligned_cols=127  Identities=11%  Similarity=-0.065  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      -+..+-..+...++++.|+-+.++++...|++..++.+|.++...|++.+|+..+++. ...+.++.+++.+|.++..+|
T Consensus       245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  324 (537)
T 3fp2_A          245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ  324 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Confidence            3445555666777777777777777777777667777777777777777777776553 234566677777777777777


Q ss_pred             Chhhhhhhhh----------------------------------hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           87 SGTSVCRCSV----------------------------------MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        87 ~~~ea~~~~~----------------------------------~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      ++++|++...                                  ..+...|....+++.+|.++..+|++++|+.+|+++
T Consensus       325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            7777753211                                  111122444556677788888888888888888877


Q ss_pred             hc
Q 032655          133 DE  134 (136)
Q Consensus       133 L~  134 (136)
                      ++
T Consensus       405 ~~  406 (537)
T 3fp2_A          405 KR  406 (537)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.23  E-value=1.4e-10  Score=91.81  Aligned_cols=93  Identities=14%  Similarity=0.032  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~  118 (136)
                      ..++.+|.++...|++.+|+..+++..- .+. +..++.+|.++...|++++|++.....+...|....+++.+|.+|..
T Consensus       244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence            4578899999999999999998876533 334 78899999999999999999764432222122233334444555555


Q ss_pred             cCChHHHHHHHHHhh
Q 032655          119 LGNCAQARLWLVSCD  133 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL  133 (136)
                      +|++++|+..|++++
T Consensus       323 ~~~~~~A~~~~~~a~  337 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQ  337 (537)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            555555555555444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.23  E-value=1.5e-10  Score=84.25  Aligned_cols=85  Identities=7%  Similarity=-0.132  Sum_probs=57.2

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCCChH----HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTNDPA----DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~----~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l   85 (136)
                      .+..-+...+++++|+.+.++++...++++    .++.+|.++...|++++|+..+++. ...+.++..++.+|.++..+
T Consensus        42 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  121 (272)
T 3u4t_A           42 RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK  121 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence            344456667777777777777777332333    3677777777777777777777553 33456667777777777777


Q ss_pred             cChhhhhhhh
Q 032655           86 RSGTSVCRCS   95 (136)
Q Consensus        86 ~~~~ea~~~~   95 (136)
                      |++++|++..
T Consensus       122 ~~~~~A~~~~  131 (272)
T 3u4t_A          122 GNFPLAIQYM  131 (272)
T ss_dssp             TCHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            7777776543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.22  E-value=7.6e-11  Score=83.34  Aligned_cols=127  Identities=10%  Similarity=-0.058  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch----------------HHHHHHHHHHhccCChHHHHHHHhcC-c
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP----------------ADVYMQAQALFLGRHYRRPFHLLNSS-K   66 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~----------------~~~~~la~~l~~~g~~~~A~~~l~~~-~   66 (136)
                      ..+.+..+-..+...++|+.|+-+.++++.+.| ++                ..++.+|.|++..|+|.+|+..+++. .
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            455677777888899999999999999999998 55                67888999999999999999988664 3


Q ss_pred             ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHH-HHHHH
Q 032655           67 IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQAR-LWLVS  131 (136)
Q Consensus        67 l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~-~~y~~  131 (136)
                      +.+.+..+++.+|.++..+|+|++|.+.....+...|....+...+|.++..+++.+++. ..|+.
T Consensus       117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  182 (198)
T 2fbn_A          117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGG  182 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--------
T ss_pred             hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788999999999999999999988665444333445667788899999998888877 44443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.22  E-value=3.3e-11  Score=76.00  Aligned_cols=100  Identities=11%  Similarity=0.204  Sum_probs=81.4

Q ss_pred             CC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccch--HhHHHHH
Q 032655           36 TN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMI--SSAICFL  111 (136)
Q Consensus        36 ~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~--~a~i~~l  111 (136)
                      +| +++.++.+|.+++..|++.+|+..+++. ...+.+...++.+|.++..+|++++|+......+...|.  ...+++.
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            46 5677888999999999999999988664 335567788899999999999999998766544433344  5678889


Q ss_pred             HHHHHHHc-CChHHHHHHHHHhhcc
Q 032655          112 RGKAYEAL-GNCAQARLWLVSCDEF  135 (136)
Q Consensus       112 ~G~~~~~~-~~~~~A~~~y~~AL~~  135 (136)
                      +|.++..+ |++++|+++|+++++.
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            99999999 9999999999998864

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.22  E-value=4.7e-11  Score=78.03  Aligned_cols=83  Identities=8%  Similarity=-0.043  Sum_probs=42.0

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-Ch---HHHHHHHHHHhccCChHHHHHHHhcCc-ccccC---cchHHHHHHHHHHc
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DP---ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD---LRFRYLAAKCLEEL   85 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~---~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~---~~~~~l~a~c~~~l   85 (136)
                      ..+...++|+.|+...++++...| ++   +.++.+|.+++..|+|.+|+..+++.. ..+.+   +...+.+|.|+.++
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~   89 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE   89 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence            344455555555555555555555 33   345555555555555555555544321 12333   34455555555555


Q ss_pred             cChhhhhhhhh
Q 032655           86 RSGTSVCRCSV   96 (136)
Q Consensus        86 ~~~~ea~~~~~   96 (136)
                      |++++|.+...
T Consensus        90 g~~~~A~~~~~  100 (129)
T 2xev_A           90 GKNTEAQQTLQ  100 (129)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            55555554433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.22  E-value=1.1e-10  Score=85.70  Aligned_cols=130  Identities=10%  Similarity=-0.058  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccC-----C----ChHHHHHHHHHHhccCChHHHHHHHhcCc-c--------
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALT-----N----DPADVYMQAQALFLGRHYRRPFHLLNSSK-I--------   67 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~-----~----~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l--------   67 (136)
                      ..-+..+..-+...++++.|+-+.++++.+.     +    ....++.+|.++...|++++|+.++++.. +        
T Consensus       111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  190 (311)
T 3nf1_A          111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD  190 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            3445566677888999999999999999885     2    23457889999999999999999886642 1        


Q ss_pred             cccCcchHHHHHHHHHHccChhhhhhhhhhhh------------------------------------------------
Q 032655           68 VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR------------------------------------------------   99 (136)
Q Consensus        68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~------------------------------------------------   99 (136)
                      .+....+.+.+|.++..+|++++|.+.....+                                                
T Consensus       191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  270 (311)
T 3nf1_A          191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC  270 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC------
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc
Confidence            23455688999999999999999964221000                                                


Q ss_pred             -cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          100 -LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       100 -~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                       ...|..+.+++.+|.+|..+|++++|..+|++|+++
T Consensus       271 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             012556677889999999999999999999999874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.21  E-value=2.8e-10  Score=85.22  Aligned_cols=123  Identities=13%  Similarity=-0.003  Sum_probs=90.4

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC---C----hHHHHHHHHHHhccCChHHHHHHHhcCc-c---ccc----CcchHHH
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN---D----PADVYMQAQALFLGRHYRRPFHLLNSSK-I---VLR----DLRFRYL   77 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~---~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l---~~~----~~~~~~l   77 (136)
                      ...+...++++.|+...++++...+   +    ....+.+|.+|+..|+|++|+.+++++. +   .+.    ...+.+.
T Consensus       122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence            3445667799999999999887664   1    2356788999999999999988886642 1   111    1258889


Q ss_pred             HHHHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHH-HHHHHHhhcc
Q 032655           78 AAKCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQA-RLWLVSCDEF  135 (136)
Q Consensus        78 ~a~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A-~~~y~~AL~~  135 (136)
                      .|.++.++|+|++|++.....+      +.....+.+++.+|.+|.++|++++| ..+|++|+.+
T Consensus       202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            9999999999999986543221      11233567788999999999999999 7889998864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.21  E-value=1.4e-10  Score=78.27  Aligned_cols=93  Identities=14%  Similarity=0.088  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~   82 (136)
                      -.+.+..+...+...++|+.|+-+.++++...| ++..++.+|.|+...|+|++|+..+++. .+.+.++..++.+|.|+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            345566677788899999999999999999999 8889999999999999999999988664 44678999999999999


Q ss_pred             HHccChhhhhhhhhh
Q 032655           83 EELRSGTSVCRCSVM   97 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~   97 (136)
                      ..+|++++|......
T Consensus        97 ~~~g~~~~A~~~~~~  111 (142)
T 2xcb_A           97 LQLGDLDGAESGFYS  111 (142)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            999999999876543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.21  E-value=3.2e-10  Score=87.98  Aligned_cols=130  Identities=10%  Similarity=-0.056  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      .+.+..+...+...++++.|+-+.++++...| ++..++.+|.+++..|++.+|+..+++. ...+.+..+++.+|.++.
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            44566778888999999999999999999999 7889999999999999999999988764 335677889999999999


Q ss_pred             HccChhhhhhhhhhhhcccchHh---H------------HHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISS---A------------ICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a---~------------i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+|++++|.......+...|...   .            ..+.+|.++...|++++|+.+|.++++.
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  172 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV  172 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999875543322112111   1            2446688899999999999999998863

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.21  E-value=4e-10  Score=85.17  Aligned_cols=126  Identities=10%  Similarity=-0.043  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhcc--CC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAAL--TN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~--~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~   82 (136)
                      ..-++.+...+...++++.|+-..+++++.  +| ++..++.+|.++...|++++|+..+++    +.++.+++..|.++
T Consensus        65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~  140 (291)
T 3mkr_A           65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQIL  140 (291)
T ss_dssp             HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence            456778888888999999999999999876  48 777899999999999999999999987    57889999999999


Q ss_pred             HHccChhhhhhhhh-----------------h-h------------------hcccchHhHHHHHHHHHHHHcCChHHHH
Q 032655           83 EELRSGTSVCRCSV-----------------M-L------------------RLLKMISSAICFLRGKAYEALGNCAQAR  126 (136)
Q Consensus        83 ~~l~~~~ea~~~~~-----------------~-~------------------~~~~~~~a~i~~l~G~~~~~~~~~~~A~  126 (136)
                      .++|++++|.....                 + .                  +...|....+++.+|.++..+|++++|.
T Consensus       141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~  220 (291)
T 3mkr_A          141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE  220 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999853110                 0 0                  0123556677889999999999999999


Q ss_pred             HHHHHhhcc
Q 032655          127 LWLVSCDEF  135 (136)
Q Consensus       127 ~~y~~AL~~  135 (136)
                      ..|++||+.
T Consensus       221 ~~l~~al~~  229 (291)
T 3mkr_A          221 GVLQEALDK  229 (291)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999864

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.20  E-value=2.3e-11  Score=80.73  Aligned_cols=96  Identities=7%  Similarity=-0.154  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~  118 (136)
                      ..++.+|.+++..|++.+|+..+++. ...+.+...++.+|.++..+|++++|+......+...|....+++.+|.+|..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46888999999999999999988665 34677888999999999999999999876655443344556678899999999


Q ss_pred             cCChHHHHHHHHHhhcc
Q 032655          119 LGNCAQARLWLVSCDEF  135 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL~~  135 (136)
                      +|++++|+.+|++++++
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999999864

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.20  E-value=2.6e-10  Score=88.49  Aligned_cols=127  Identities=12%  Similarity=-0.067  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHH--------
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLA--------   78 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~--------   78 (136)
                      +..+..-+...++++.|+-+.++++..+| ++..++.+|.++...|++.+|+..+++. .+.+.+..+...+        
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  259 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK  259 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            33445555666666666666666666666 5566666666666666666666666443 2233444444444        


Q ss_pred             ----HHHHHHccChhhhhh--------------------------------------hhhhhhcccchHhHHHHHHHHHH
Q 032655           79 ----AKCLEELRSGTSVCR--------------------------------------CSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        79 ----a~c~~~l~~~~ea~~--------------------------------------~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                          |.++...|++++|.+                                      .....+...|....+++.+|.+|
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence                666666666666542                                      22111112244556777888888


Q ss_pred             HHcCChHHHHHHHHHhhcc
Q 032655          117 EALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+|++++|+.+|++++++
T Consensus       340 ~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            8888888888888888764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.1e-10  Score=91.51  Aligned_cols=125  Identities=8%  Similarity=-0.099  Sum_probs=68.7

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG   88 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~   88 (136)
                      .+..-+...++++.|+.+.++++...| ++..++.+|.++...|++.+|+..+++. ...+.++..++.+|.++...|++
T Consensus       309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  388 (514)
T 2gw1_A          309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF  388 (514)
T ss_dssp             HHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCH
Confidence            334444555566666666666655555 4555555555666666665555555442 12334455555555555555555


Q ss_pred             hhhh-------------------------------------------hhhhhhhcccchHhHHHHHHHHHHHHcCChHHH
Q 032655           89 TSVC-------------------------------------------RCSVMLRLLKMISSAICFLRGKAYEALGNCAQA  125 (136)
Q Consensus        89 ~ea~-------------------------------------------~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A  125 (136)
                      ++|.                                           ......+...|....+++.+|.+|..+|++++|
T Consensus       389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  468 (514)
T 2gw1_A          389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA  468 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence            5554                                           322221111233445566777777777777777


Q ss_pred             HHHHHHhhcc
Q 032655          126 RLWLVSCDEF  135 (136)
Q Consensus       126 ~~~y~~AL~~  135 (136)
                      +.+|++++++
T Consensus       469 ~~~~~~a~~~  478 (514)
T 2gw1_A          469 ITLFEESADL  478 (514)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777777653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.19  E-value=2.5e-10  Score=87.96  Aligned_cols=78  Identities=14%  Similarity=0.123  Sum_probs=39.0

Q ss_pred             HHHcCChhhHHHHHHHHhccC---CC----hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc-------CcchHHHHHH
Q 032655           16 CVSKHLYSSAIFFANEVAALT---ND----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR-------DLRFRYLAAK   80 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~---~~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~-------~~~~~~l~a~   80 (136)
                      +...++|+.|+.+.++++.+.   |+    +...+.+|.+++..|++.+|+..++++. +.+.       ...+.+.+|.
T Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  192 (383)
T 3ulq_A          113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT  192 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            344556666666666655542   21    2235555666666666655555543321 1111       1235555555


Q ss_pred             HHHHccChhhhhh
Q 032655           81 CLEELRSGTSVCR   93 (136)
Q Consensus        81 c~~~l~~~~ea~~   93 (136)
                      ++..+|+|++|++
T Consensus       193 ~~~~~g~~~~A~~  205 (383)
T 3ulq_A          193 NFLDLKQYEDAIS  205 (383)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHhcCHHHHHH
Confidence            6666666655543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.19  E-value=3.3e-10  Score=71.78  Aligned_cols=112  Identities=11%  Similarity=-0.096  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      .+.+..+...+...+++++|+-+.++++...| ++..++.+|.+++..|+|.+|+..+++. ...+.++.+.+.+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34566677777888888888888888888888 7777888888888888888888877654 334567778888888888


Q ss_pred             HccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE  117 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~  117 (136)
                      .+|++++|.+.....+...|....++..+|.+.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            8888888877655433333444455566666543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.19  E-value=5.8e-11  Score=81.44  Aligned_cols=116  Identities=10%  Similarity=-0.090  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhcc------------------CC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAAL------------------TN-DPADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~------------------~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      ..+.++..-..+...++|+.|+-..++++.+                  .| .+..++.+|.|++..|+|.+|+..+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3455666667777788888888888888877                  22 2234666777777777777777766443


Q ss_pred             -cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHh-HHHHHHHHHHHHcC
Q 032655           66 -KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISS-AICFLRGKAYEALG  120 (136)
Q Consensus        66 -~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a-~i~~l~G~~~~~~~  120 (136)
                       .+++.++.+++.+|.|+..+|+|++|.......+...|... .+...++.+.+.++
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence             33566677777777777777777777765543332222222 44445555555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.19  E-value=1.6e-10  Score=84.89  Aligned_cols=132  Identities=11%  Similarity=-0.053  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhcc--------CC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-------
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAAL--------TN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-------   67 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~--------~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-------   67 (136)
                      +..+-+..+...+...++++.|+.+.++++.+        .| .+..++.+|.++...|++++|+..+++..-       
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34556778888899999999999999999986        23 455688899999999999999998866431       


Q ss_pred             --cccCcchHHHHHHHHHHccChhhhhhhhhhhh--------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           68 --VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR--------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        68 --~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~--------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                        .+....+.+.+|.++..+|++++|.+.....+        ...+..+.++..+|.+|..+|++++|+++|++++++
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              13456788999999999999999987543211        123556777889999999999999999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.18  E-value=3e-10  Score=89.13  Aligned_cols=91  Identities=12%  Similarity=0.039  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHH
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKC   81 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c   81 (136)
                      .+..+.+...-..+...++|+.|+-..++++...|++..++.+|.|++..|+|++|+..+++. .+.+.++.+++.+|.+
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~   82 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            456677888888999999999999999999999999999999999999999999999988764 3467788899999999


Q ss_pred             HHHccChhhhhh
Q 032655           82 LEELRSGTSVCR   93 (136)
Q Consensus        82 ~~~l~~~~ea~~   93 (136)
                      +..+|++++|..
T Consensus        83 ~~~~g~~~~A~~   94 (514)
T 2gw1_A           83 NEGLGKFADAMF   94 (514)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHHhhHHHHHH
Confidence            999999999964

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.18  E-value=2.9e-10  Score=87.60  Aligned_cols=129  Identities=9%  Similarity=-0.008  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C-------hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc-----
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D-------PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL-----   72 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~-------~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~-----   72 (136)
                      .-+..+-.-+...++++.|+.+.++++.+.+ .       ......+|.++...|+|++|+..++++. +.+...     
T Consensus       144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  223 (383)
T 3ulq_A          144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM  223 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            4455566677788999999999999999875 2       1247789999999999999999886643 222222     


Q ss_pred             -chHHHHHHHHHHccChhhhhhhhhhhhc-----cc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           73 -RFRYLAAKCLEELRSGTSVCRCSVMLRL-----LK-MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        73 -~~~~l~a~c~~~l~~~~ea~~~~~~~~~-----~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                       .+++.+|.|+..+|++++|++.....+.     .. |..+.+++.+|.+|..+|++++|..+|++|+++
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             4889999999999999999998777666     44 777778889999999999999999999999874

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.17  E-value=5.1e-10  Score=80.86  Aligned_cols=124  Identities=15%  Similarity=0.011  Sum_probs=97.3

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-Ch---HHHHHHHHHHhc------------------cCChHHHHHHHhcCc-c
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DP---ADVYMQAQALFL------------------GRHYRRPFHLLNSSK-I   67 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~---~~~~~la~~l~~------------------~g~~~~A~~~l~~~~-l   67 (136)
                      .+..-+...++|+.|+-..++++..+| ++   ..++.+|.+++.                  .|++.+|+..+++.- .
T Consensus        46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  125 (225)
T 2yhc_A           46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG  125 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence            344566778999999999999999999 44   368899999986                  678999999886642 2


Q ss_pred             cccCcchH-----------------HHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655           68 VLRDLRFR-----------------YLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICFLRGKAYEALGNCAQARL  127 (136)
Q Consensus        68 ~~~~~~~~-----------------~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~l~G~~~~~~~~~~~A~~  127 (136)
                      .|.++...                 +..|.++++.|+|++|+......+.   +.+....+++.+|.+|.++|+.++|+.
T Consensus       126 ~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~  205 (225)
T 2yhc_A          126 YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK  205 (225)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence            34444333                 6789999999999999886654333   233455678899999999999999999


Q ss_pred             HHHHhhc
Q 032655          128 WLVSCDE  134 (136)
Q Consensus       128 ~y~~AL~  134 (136)
                      .|+.++.
T Consensus       206 ~~~~l~~  212 (225)
T 2yhc_A          206 VAKIIAA  212 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.17  E-value=8.9e-11  Score=76.32  Aligned_cols=98  Identities=13%  Similarity=0.014  Sum_probs=82.7

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                      ++..++.+|.+++..|+|.+|+..+++. ...+.+..+++.+|.++..+|++++|+......+...|....+++.+|.+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            4567999999999999999999988664 345678899999999999999999998866544433345667888999999


Q ss_pred             HHcCChHHHHHHHHHhhcc
Q 032655          117 EALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+|++++|+.+|+++++.
T Consensus        95 ~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHh
Confidence            9999999999999999864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.17  E-value=1.8e-10  Score=73.02  Aligned_cols=97  Identities=7%  Similarity=-0.099  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE  117 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~  117 (136)
                      ++.++.+|.+++..|+|.+|+..+++. ...+.++..++..|.|+..+|++++|.+.....+...|....+++.+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            567889999999999999999988765 3356788899999999999999999987665443333445677889999999


Q ss_pred             HcCChHHHHHHHHHhhcc
Q 032655          118 ALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       118 ~~~~~~~A~~~y~~AL~~  135 (136)
                      .+|++++|..+|+++++.
T Consensus        84 ~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHc
Confidence            999999999999999875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.17  E-value=1.4e-09  Score=81.40  Aligned_cols=131  Identities=11%  Similarity=-0.042  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChH------HHHHHHHHHhccCChHHHHHHHhcCc-cccc------
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPA------DVYMQAQALFLGRHYRRPFHLLNSSK-IVLR------   70 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~------~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~------   70 (136)
                      .++.+...+..++.+++|+.|+-..++.+...| .++      ..+.+|.++...|+|++|+..++++- ....      
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            345666778889999999999999999998877 332      25668899999999999999876532 1111      


Q ss_pred             CcchHHHHHHHHHHccChhhhhhhhhhhh---c--c-cc-hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           71 DLRFRYLAAKCLEELRSGTSVCRCSVMLR---L--L-KM-ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        71 ~~~~~~l~a~c~~~l~~~~ea~~~~~~~~---~--~-~~-~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ...+.+.+|.++..+|+|++|++.....+   .  + .+ ....+++.+|.+|..+|++++|+.+|++|+++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            13478899999999999999987544322   1  1 11 23367889999999999999999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.16  E-value=2.4e-10  Score=79.31  Aligned_cols=94  Identities=11%  Similarity=0.132  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~   82 (136)
                      -.+.+..+-..+...|+|++|+-+.++++.++| +++.++.+|.|+...|+|++|+..+++. .+.|.++..++.+|.|+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            344566667778889999999999999999999 8999999999999999999999988665 55788999999999999


Q ss_pred             HHccChhhhhhhhhhh
Q 032655           83 EELRSGTSVCRCSVML   98 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~~   98 (136)
                      .++|++++|+......
T Consensus       115 ~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A          115 LRLKAPLKAKECFELV  130 (151)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            9999999998866543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.16  E-value=6.9e-10  Score=70.83  Aligned_cols=114  Identities=12%  Similarity=0.053  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~   84 (136)
                      .-+..+...+...++++.|+-+.++++...| ++..++.+|.+++..|++++|+..+++.. ..+.++...+.+|.++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            3455566677788888888888888888888 66778888888888888888888776542 244566777888888888


Q ss_pred             ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655           85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG  120 (136)
Q Consensus        85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~  120 (136)
                      +|++++|.......+...|....+...+|.++..+|
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            888888877554433333445556677788776654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.15  E-value=9.8e-12  Score=95.89  Aligned_cols=116  Identities=13%  Similarity=0.009  Sum_probs=94.4

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccC---------------cchHHHHHHHH
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRD---------------LRFRYLAAKCL   82 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~---------------~~~~~l~a~c~   82 (136)
                      ..++.|+-..++.....| .+..++.+|.+++..|+|.+|+..+++. .+.+.+               ..+++.+|.|+
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666677 6678999999999999999999988665 334555               48999999999


Q ss_pred             HHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .++|+|++|++.....+...|....+++.+|.+|..+|++++|+.+|++||++
T Consensus       207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999998766544434556678899999999999999999999999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.15  E-value=1.4e-10  Score=74.93  Aligned_cols=95  Identities=5%  Similarity=-0.064  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcc-------cchHhHHHHH
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLL-------KMISSAICFL  111 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~-------~~~~a~i~~l  111 (136)
                      +.++.+|.+++..|+|.+|+..+++. ...+.++.+.+.+|.++...|++++|++.....+..       .+....+++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            44556666666666666666655443 223445556666666666666666665433221110       0112556667


Q ss_pred             HHHHHHHcCChHHHHHHHHHhhc
Q 032655          112 RGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       112 ~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +|.+|..+|++++|+.+|+++++
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH
Confidence            77777777777777777777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.13  E-value=4.1e-10  Score=77.07  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~   82 (136)
                      ..+.+..+...+...++|+.|+-..++++...| ++..++.+|.|+...|+|++|+..+++. .+.+.++..++.+|.|+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            344556677788899999999999999999999 8889999999999999999999988665 44678999999999999


Q ss_pred             HHccChhhhhhhhhh
Q 032655           83 EELRSGTSVCRCSVM   97 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~   97 (136)
                      ..+|++++|++....
T Consensus       100 ~~~g~~~~A~~~~~~  114 (148)
T 2vgx_A          100 LQXGELAEAESGLFL  114 (148)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            999999999876543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=3e-10  Score=75.18  Aligned_cols=98  Identities=16%  Similarity=0.099  Sum_probs=62.5

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC---cchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD---LRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRG  113 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~---~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G  113 (136)
                      +.+.++.+|.+++..|+|.+|+..+++.. ..+.+   ..+++.+|.|+..+|+|++|++.....+...|....+++.+|
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            34556777777777777777777665532 22333   566677777777777777776654433222233455666777


Q ss_pred             HHHHHcCChHHHHHHHHHhhcc
Q 032655          114 KAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       114 ~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+|..+|++++|+.+|++++++
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHc
Confidence            7777777777777777777653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.12  E-value=6.6e-10  Score=76.21  Aligned_cols=98  Identities=10%  Similarity=0.024  Sum_probs=84.1

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                      +++.++.+|.+++..|+|.+|+..+++. .+.+.++.+++.+|.|++.+|+|++|++.....+...|....+++.+|.+|
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4567899999999999999999988664 346678899999999999999999999876654443455677889999999


Q ss_pred             HHcCChHHHHHHHHHhhcc
Q 032655          117 EALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+|++++|+.+|++++++
T Consensus        90 ~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh
Confidence            9999999999999999864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.12  E-value=4.6e-10  Score=86.30  Aligned_cols=132  Identities=11%  Similarity=0.033  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch----HHHHHHHHHHhccCChHHHHHHHhcCc-c------cccC
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP----ADVYMQAQALFLGRHYRRPFHLLNSSK-I------VLRD   71 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~----~~~~~la~~l~~~g~~~~A~~~l~~~~-l------~~~~   71 (136)
                      .....+..+-..+...++|++|+-+.++++.+.| ++    ..++.+|.+++..|+|.+|+..+++.. +      .+..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3444566677788899999999999999999998 55    357889999999999999999876542 1      2455


Q ss_pred             cchHHHHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCC-----------------hHHHHHH
Q 032655           72 LRFRYLAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGN-----------------CAQARLW  128 (136)
Q Consensus        72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~-----------------~~~A~~~  128 (136)
                      ..+++.+|.++..+|++++|.+.....      ..+.+..+.++..+|.+|..+|+                 +++|+++
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            678999999999999999998754322      11234566778899999999999                 9999999


Q ss_pred             HHHhhcc
Q 032655          129 LVSCDEF  135 (136)
Q Consensus       129 y~~AL~~  135 (136)
                      |++++++
T Consensus       206 ~~~al~~  212 (411)
T 4a1s_A          206 YQENLKL  212 (411)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.11  E-value=6e-10  Score=81.88  Aligned_cols=128  Identities=13%  Similarity=0.092  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC---Ch----HHHHHHHHHHhccCChHHHHHHHhcCc-ccccC------cc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN---DP----ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD------LR   73 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~~----~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~------~~   73 (136)
                      -+..+..-+...++++.|+-+.++++.+.|   ++    ..++.+|.++...|++.+|+..+++.. +.+..      ..
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  264 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            344556667788999999999999998875   22    258889999999999999999886642 22222      56


Q ss_pred             hHHHHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           74 FRYLAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        74 ~~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+.+|.++..+|++++|.......      ....+..+.++..+|.+|..+|++++|..+|++|+++
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            7889999999999999998754321      1123445667789999999999999999999999975

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.11  E-value=4.3e-11  Score=96.63  Aligned_cols=116  Identities=12%  Similarity=-0.030  Sum_probs=93.8

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      .+..+++|++|+-..++++.+.| ++..++.+|.+++..|+|++|+..+++. .+.+.++..++.+|.++.++|++++|+
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            34568999999999999999999 7889999999999999999999988664 446788899999999999999999998


Q ss_pred             hhhhhhhcccchHhHHHHHHHHH--HHHcCChHHHHHHHH
Q 032655           93 RCSVMLRLLKMISSAICFLRGKA--YEALGNCAQARLWLV  130 (136)
Q Consensus        93 ~~~~~~~~~~~~~a~i~~l~G~~--~~~~~~~~~A~~~y~  130 (136)
                      +.....+...|....++..+|.+  +.++|++++|++.|+
T Consensus        95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            86654433334445566778888  899999999999999

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.11  E-value=6.6e-10  Score=84.50  Aligned_cols=128  Identities=13%  Similarity=0.064  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChH------HHHHHHHHHhccCChHHHHHHHhcCc-ccccC------cc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPA------DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD------LR   73 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~------~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~------~~   73 (136)
                      -+..+..-+...++++.|+-+.++++.+.| .++      .++.+|.++...|++++|+..+++.. +.+..      ..
T Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  268 (406)
T 3sf4_A          189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  268 (406)
T ss_dssp             HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence            345556677788999999999999998876 222      57889999999999999999886642 22222      56


Q ss_pred             hHHHHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           74 FRYLAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        74 ~~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+.+|.++...|++++|.......      ....+..+.++..+|.+|..+|++++|+.+|++|+++
T Consensus       269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7889999999999999998754321      1123445667789999999999999999999999874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.11  E-value=8.3e-11  Score=98.55  Aligned_cols=118  Identities=10%  Similarity=-0.123  Sum_probs=103.4

Q ss_pred             HHcCChhhHHHHHHHHh--------ccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655           17 VSKHLYSSAIFFANEVA--------ALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~--------~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +..++++.|+-..++++        ..+| +++.++.+|.+++..|+|++|+..+++. .+.+.+...++.+|.++..+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            67899999999999999        8888 7888999999999999999999988665 346788899999999999999


Q ss_pred             ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|++|++.....+...|.....++.+|.+|..+|++++ +++|++||++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~  529 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST  529 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence            99999987766554445667788999999999999999 9999999864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.11  E-value=2.1e-10  Score=82.20  Aligned_cols=98  Identities=7%  Similarity=-0.053  Sum_probs=84.5

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHH----------------HHHHHHHccChhhhhhhhhhhhc
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYL----------------AAKCLEELRSGTSVCRCSVMLRL  100 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l----------------~a~c~~~l~~~~ea~~~~~~~~~  100 (136)
                      +++.++..|..++..|+|.+|+..+++. .+.+.++..++.                +|.++.++|++++|+......+.
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5678899999999999999999988765 346678888888                99999999999999987665544


Q ss_pred             ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          101 LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       101 ~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..|....+++.+|.+|..+|++++|+.+|+++|++
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  117 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL  117 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            44566778899999999999999999999999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.10  E-value=7.7e-10  Score=88.65  Aligned_cols=128  Identities=7%  Similarity=-0.052  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C---------------hHHHHHHHHHHhccCChHHHHHHHhcC-cc
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D---------------PADVYMQAQALFLGRHYRRPFHLLNSS-KI   67 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---------------~~~~~~la~~l~~~g~~~~A~~~l~~~-~l   67 (136)
                      ....++.+-..+...++|+.|+-..++++.+.| +               ...++.+|.|++..|+|++|+..+++. .+
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            344566677778889999999999999999998 4               367888999999999999999988664 44


Q ss_pred             cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH-HHHHh
Q 032655           68 VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL-WLVSC  132 (136)
Q Consensus        68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~-~y~~A  132 (136)
                      .+.+...++.+|.|+..+|+|++|+......+...|....++..+|.++..+++.++|.. .|++.
T Consensus       347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678889999999999999999999887665554445566788899999999999988764 45444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.09  E-value=3.3e-11  Score=96.64  Aligned_cols=116  Identities=16%  Similarity=0.049  Sum_probs=93.1

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC---------------cchHHHHHHHH
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD---------------LRFRYLAAKCL   82 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~---------------~~~~~l~a~c~   82 (136)
                      .+++.|+-..++.....| ....++.+|.+++..|+|.+|+..++++- +.+.+               ..+++.+|.|+
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666 56678899999999999999999886653 34455               48899999999


Q ss_pred             HHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .++|+|++|+......+...|....+++.+|.+|..+|++++|+.+|++||++
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999998766544333455677899999999999999999999999975

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.09  E-value=9.4e-10  Score=84.53  Aligned_cols=128  Identities=9%  Similarity=0.032  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCCC-h------HHHHHHHHHHhccCChHHHHHHHhcCc-cccc------Ccc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTND-P------ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR------DLR   73 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~------~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~------~~~   73 (136)
                      -+..+..-+...++++.|+.+.++++.+.|. .      ..++.+|.++...|++++|+..+++.. +.+.      ...
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  304 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ  304 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3445566678889999999999999998862 1      257889999999999999999886643 2222      256


Q ss_pred             hHHHHHHHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           74 FRYLAAKCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        74 ~~~l~a~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+.+|.++..+|++++|.......+      ...+..+.+++.+|.+|..+|++++|..+|++|+++
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            78999999999999999987543221      123445667889999999999999999999999875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.09  E-value=1.5e-09  Score=81.50  Aligned_cols=125  Identities=9%  Similarity=-0.090  Sum_probs=75.5

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC---C----hHHHHHHHHHHhcc-CChHHHHHHHhcCc-ccccC------cchH
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN---D----PADVYMQAQALFLG-RHYRRPFHLLNSSK-IVLRD------LRFR   75 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~---~----~~~~~~la~~l~~~-g~~~~A~~~l~~~~-l~~~~------~~~~   75 (136)
                      .+-.-+...|+|+.|+.+.++++.+.|   +    ...+..+|.++... |+|++|+..++++. +.+..      ..++
T Consensus        82 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~  161 (292)
T 1qqe_A           82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF  161 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            344445556677777777777776664   2    12455667777764 77777776665432 22211      3456


Q ss_pred             HHHHHHHHHccChhhhhhhhhhhhc--c-cc----hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           76 YLAAKCLEELRSGTSVCRCSVMLRL--L-KM----ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        76 ~l~a~c~~~l~~~~ea~~~~~~~~~--~-~~----~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+|.++.++|+|++|++.....+.  + .+    .....++.+|.++..+|++++|+.+|++++++
T Consensus       162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6667777777777777654432211  1 11    12235567788888888888888888888764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.09  E-value=5.5e-10  Score=71.83  Aligned_cols=98  Identities=9%  Similarity=0.037  Sum_probs=81.9

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                      ++..++.+|.+++..|+|.+|+..+++.. ..+.++...+.+|.++...|++++|++.....+...|....+++.+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            45568899999999999999999887643 35567889999999999999999998866544433344567788999999


Q ss_pred             HHcCChHHHHHHHHHhhcc
Q 032655          117 EALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+|++++|+.+|+++++.
T Consensus        91 ~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhc
Confidence            9999999999999999864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.09  E-value=9e-10  Score=72.52  Aligned_cols=115  Identities=8%  Similarity=-0.062  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      .+.+..+...+...++|+.|+...++++..+| ++..++.+|.|++..|+|.+|+..+++. .+.+.++..++.+|.|+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34566777888899999999999999999999 7888999999999999999999988664 346778899999999999


Q ss_pred             HccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcC
Q 032655           84 ELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALG  120 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~  120 (136)
                      .+|++++|++.....+.     ..+....+.-.++.+..+..
T Consensus        89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999875443221     11224455555555555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.09  E-value=5e-10  Score=75.51  Aligned_cols=97  Identities=10%  Similarity=0.007  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE  117 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~  117 (136)
                      ++.++.+|.+++..|+|.+|+..+++. ...+.++.+++.+|.|+..+|+|++|++.....+...|....+++.+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            456889999999999999999988664 3356778899999999999999999988665444333455677889999999


Q ss_pred             HcCChHHHHHHHHHhhcc
Q 032655          118 ALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       118 ~~~~~~~A~~~y~~AL~~  135 (136)
                      .+|++++|+.+|++++++
T Consensus        93 ~~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHh
Confidence            999999999999999864

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.09  E-value=2.3e-09  Score=82.59  Aligned_cols=123  Identities=7%  Similarity=-0.025  Sum_probs=63.3

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC---C-----hHHHHHHHHHHhccCChHHHHHHHhcCc-ccc------cCcchHHH
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN---D-----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVL------RDLRFRYL   77 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~---~-----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~------~~~~~~~l   77 (136)
                      -.-+...++++.|+.+.++++.+.+   +     ......+|.++...|+|++|+..++++- +.+      ....+.+.
T Consensus       148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  227 (378)
T 3q15_A          148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN  227 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3344445555555555555555443   1     1123445555555555555555443321 100      11234455


Q ss_pred             HHHHHHHccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           78 AAKCLEELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        78 ~a~c~~~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|.|+..+|++++|++.....+.     ..|..+.+++.+|.+|.++|++++|..+|++|+++
T Consensus       228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            55555555555555543322111     33444556667777777777777777777777654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.09  E-value=1.2e-09  Score=75.96  Aligned_cols=129  Identities=5%  Similarity=-0.118  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-------ChHHHHHHHHHHhccCChHHHHHHHhcCc-cc------c-cC
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-------DPADVYMQAQALFLGRHYRRPFHLLNSSK-IV------L-RD   71 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~------~-~~   71 (136)
                      .-+..+-.-+...++++.|+.+.++++.+..       ....++.+|.++...|++++|+..+++.. +.      + ..
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  106 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA  106 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence            3455666777889999999999999998642       23457889999999999999999886632 21      1 22


Q ss_pred             cchHHHHHHHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           72 LRFRYLAAKCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+.+.+|.++..+|++++|.......+      ......+.++..+|.++..+|++++|..+|++|+++
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            3568899999999999999986543211      122334556679999999999999999999999874

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.08  E-value=3.6e-09  Score=77.61  Aligned_cols=120  Identities=8%  Similarity=0.037  Sum_probs=75.7

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~   84 (136)
                      ..+-..+...++++.|+.+.++++.  | +++.++.+|.++..    .|++.+|+..+++..- ..++.+.+.+|.++..
T Consensus        10 ~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~   86 (273)
T 1ouv_A           10 VGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LNYSNGCHLLGNLYYS   86 (273)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhC
Confidence            3444556667888888888888777  4 56678888888888    8888888887765431 2467777888888888


Q ss_pred             ----ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH----cCChHHHHHHHHHhhc
Q 032655           85 ----LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA----LGNCAQARLWLVSCDE  134 (136)
Q Consensus        85 ----l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL~  134 (136)
                          .+++++|++......+.  ..+..++.+|.+|..    .+++++|+++|++|++
T Consensus        87 g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~  142 (273)
T 1ouv_A           87 GQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD  142 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence                88888876543221111  022334444555555    5555555555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.08  E-value=5.6e-10  Score=83.83  Aligned_cols=85  Identities=7%  Similarity=0.004  Sum_probs=42.9

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      ..+-..+...++|+.|+-..++++...| ++..++.+|.|++..|+|++|+..+++. .+.+.+...++.+|.++..+|+
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   87 (281)
T 2c2l_A            8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   87 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3344444455555555555555555555 4444555555555555555555544332 2334444555555555555555


Q ss_pred             hhhhhhh
Q 032655           88 GTSVCRC   94 (136)
Q Consensus        88 ~~ea~~~   94 (136)
                      +++|+..
T Consensus        88 ~~~A~~~   94 (281)
T 2c2l_A           88 YDEAIAN   94 (281)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.07  E-value=1.8e-09  Score=81.04  Aligned_cols=133  Identities=11%  Similarity=-0.027  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC---C----hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc----
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN---D----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR----   70 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~----   70 (136)
                      ++.++-+.....-+...++|+.|+-..++++.+.+   +    ...+..+|.++...|+|++|+..++++. +.+.    
T Consensus        34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~  113 (292)
T 1qqe_A           34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            45666777777788889999999999999999864   3    3357789999999999999999886643 2221    


Q ss_pred             --CcchHHHHHHHHHHc-cChhhhhhhhhhhhc-----cc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           71 --DLRFRYLAAKCLEEL-RSGTSVCRCSVMLRL-----LK-MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        71 --~~~~~~l~a~c~~~l-~~~~ea~~~~~~~~~-----~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                        ...+...+|.++... |++++|+......+.     +. +..+.++..+|.+|..+|++++|+.+|++++++
T Consensus       114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  187 (292)
T 1qqe_A          114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence              135788999999995 999999875443221     11 223456778899999999999999999999874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.07  E-value=9.2e-10  Score=76.53  Aligned_cols=77  Identities=13%  Similarity=-0.036  Sum_probs=63.4

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccC--cchHHHHHHHHHHccChhhhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRD--LRFRYLAAKCLEELRSGTSVCRCS   95 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~--~~~~~l~a~c~~~l~~~~ea~~~~   95 (136)
                      +....|+-..++++..+| +++.++.+|.++...|++++|+..+++. ...+.+  ...++.+|.++..+|++++|....
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            344568889999999999 7889999999999999999999988664 233333  558999999999999999987654


Q ss_pred             h
Q 032655           96 V   96 (136)
Q Consensus        96 ~   96 (136)
                      .
T Consensus       168 ~  168 (176)
T 2r5s_A          168 R  168 (176)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.06  E-value=6.2e-10  Score=76.21  Aligned_cols=96  Identities=13%  Similarity=0.063  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcC-cc------------------cccCcchHHHHHHHHHHccChhhhhhhhhhhhc
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSS-KI------------------VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL  100 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l------------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~  100 (136)
                      +.+...|..++..|+|..|+..+++. .+                  .+.+..+++.+|.|++++|+|++|+......+.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            45778899999999999999988664 22                  334557899999999999999999986655443


Q ss_pred             ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          101 LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       101 ~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..|..+.+++.+|.+|..+|++++|+.+|++||++
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            34556678899999999999999999999999874

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.06  E-value=1e-09  Score=69.99  Aligned_cols=97  Identities=11%  Similarity=0.075  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE  117 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~  117 (136)
                      +..++.+|.++...|++.+|+..+++.. ..+.++...+.+|.++...|++++|+..........|.....++.+|.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            5678899999999999999999886643 345677888999999999999999987655433323344567789999999


Q ss_pred             HcCChHHHHHHHHHhhcc
Q 032655          118 ALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       118 ~~~~~~~A~~~y~~AL~~  135 (136)
                      .+|++++|..+|+++++.
T Consensus        89 ~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            999999999999999864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.06  E-value=1.5e-09  Score=69.93  Aligned_cols=115  Identities=11%  Similarity=-0.005  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC-------cchHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD-------LRFRY   76 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~-------~~~~~   76 (136)
                      .+.+..+...+...++++.|+.+.++++...| ++..++.+|.+++..|+|.+|+..+++.. ..+.+       ..+.+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            44566777888999999999999999999999 77889999999999999999999886643 23444       77899


Q ss_pred             HHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCC
Q 032655           77 LAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGN  121 (136)
Q Consensus        77 l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~  121 (136)
                      .+|.++..+|++++|.+.....+...| ...+...++.+.+.++.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            999999999999999886654333223 35556677777766543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.06  E-value=8e-10  Score=78.01  Aligned_cols=97  Identities=9%  Similarity=0.070  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc----------------chHHHHHHHHHHccChhhhhhhhhhhhcc
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL----------------RFRYLAAKCLEELRSGTSVCRCSVMLRLL  101 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~----------------~~~~l~a~c~~~l~~~~ea~~~~~~~~~~  101 (136)
                      .+.+..+|.+++..|+|.+|+..+++.. +.+.++                .+++.+|.|+.++|+|++|+......+..
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4458889999999999999999886643 344555                78999999999999999998866544433


Q ss_pred             cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          102 KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       102 ~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .|....+++.+|.+|..+|++++|+.+|++|+++
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3456677899999999999999999999999864

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.05  E-value=1.2e-09  Score=84.27  Aligned_cols=120  Identities=11%  Similarity=0.041  Sum_probs=95.3

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC---C----hHHHHHHHHHHhccCChHHHHHHHhcCc-ccc-------cCcchHHHHH
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN---D----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVL-------RDLRFRYLAA   79 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~---~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~-------~~~~~~~l~a   79 (136)
                      .+...++|+.|+-+.++++.+.+   +    .+..+.+|.+++..|++..|+..++++. +.+       ....+.+.+|
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            35678999999999999998763   2    2358889999999999999998876532 111       2356888999


Q ss_pred             HHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           80 KCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        80 ~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .++..+|+|++|++.....+      ...+..+.+++.+|.+|..+|++++|+.+|++|++
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999987543321      12234666788999999999999999999999987

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=5.5e-09  Score=75.11  Aligned_cols=120  Identities=16%  Similarity=0.101  Sum_probs=86.4

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccC----ChHHHHHHHhcCcccccCcchHHHHHHHHHH---
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGR----HYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE---   84 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g----~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~---   84 (136)
                      +-..+...++++.|+.|.+++... ++++..+.+|.+|.. |    ++.+|+.++++. ....++.+.+.+|.++..   
T Consensus        24 lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~g~~~a~~~Lg~~y~~g~g  100 (212)
T 3rjv_A           24 LADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKA-VEAGSKSGEIVLARVLVNRQA  100 (212)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTCGGG
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHcCCC
Confidence            334455578999999999998754 478889999999888 6    899999988765 245678888899999888   


Q ss_pred             -ccChhhhhhhhhhhhcccc--hHhHHHHHHHHHHHH----cCChHHHHHHHHHhhc
Q 032655           85 -LRSGTSVCRCSVMLRLLKM--ISSAICFLRGKAYEA----LGNCAQARLWLVSCDE  134 (136)
Q Consensus        85 -l~~~~ea~~~~~~~~~~~~--~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL~  134 (136)
                       .+++++|++......+.-+  ..+..++.+|.+|..    .++.++|+.+|++|++
T Consensus       101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A          101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence             8888888765444332111  234556677777777    6677777777777664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.03  E-value=3.9e-09  Score=68.70  Aligned_cols=97  Identities=12%  Similarity=-0.050  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc---chHHHHHHHHHHccChhhhhhhhhhhhcccc---hHhHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL---RFRYLAAKCLEELRSGTSVCRCSVMLRLLKM---ISSAICFL  111 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~---~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~---~~a~i~~l  111 (136)
                      ++.++.+|.+++..|+|.+|+..+++.. ..+.++   ...+.+|.|++++|+|++|++.....+...|   ....+++.
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            3467899999999999999999887643 245566   6899999999999999999886654433222   23677889


Q ss_pred             HHHHHHHcCChHHHHHHHHHhhcc
Q 032655          112 RGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       112 ~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|.+|..+|++++|+.+|+++++.
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999863

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.01  E-value=3.1e-09  Score=78.05  Aligned_cols=129  Identities=13%  Similarity=0.031  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch----HHHHHHHHHHhccCChHHHHHHHhcCc-c------cccCcch
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP----ADVYMQAQALFLGRHYRRPFHLLNSSK-I------VLRDLRF   74 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~----~~~~~la~~l~~~g~~~~A~~~l~~~~-l------~~~~~~~   74 (136)
                      ..+...-..+...+++++|+.+.++++...| ++    ..++.+|.+++..|+|.+|+..+++.. +      .+....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            3455566778889999999999999999998 53    457789999999999999999876532 1      2234568


Q ss_pred             HHHHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 032655           75 RYLAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGN--------------------CAQARLW  128 (136)
Q Consensus        75 ~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~--------------------~~~A~~~  128 (136)
                      .+.+|.++..+|++++|++.....      ....+..+.++..+|.+|..+|+                    +++|...
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            899999999999999998754321      11223456677899999999999                    9999999


Q ss_pred             HHHhhcc
Q 032655          129 LVSCDEF  135 (136)
Q Consensus       129 y~~AL~~  135 (136)
                      |++++++
T Consensus       166 ~~~a~~~  172 (338)
T 3ro2_A          166 YEENLSL  172 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.01  E-value=1.7e-09  Score=84.70  Aligned_cols=123  Identities=11%  Similarity=-0.032  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhc----------------cCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-c
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAA----------------LTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-K   66 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~----------------~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~   66 (136)
                      ..+.+..+-..+...++|+.|+...++++.                ..| ++..++.+|.|++..|+|++|+..+++. .
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            445577777888899999999999999998                555 5667889999999999999999988664 4


Q ss_pred             ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655           67 IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL  127 (136)
Q Consensus        67 l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~  127 (136)
                      +.+.+..+++.+|.|+..+|+|++|++.....+...|....+...++.++..+++.++|..
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667889999999999999999999887655443334456677889999999998888754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=3.4e-09  Score=70.00  Aligned_cols=112  Identities=13%  Similarity=-0.018  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK   80 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~   80 (136)
                      .+.+..+...+...++|+.|+-+.++++...|+    +..++.+|.+++..|+|.+|+..+++. ...+.++..++.+|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            456677888899999999999999999999996    567899999999999999999988664 335677889999999


Q ss_pred             HHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655           81 CLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE  117 (136)
Q Consensus        81 c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~  117 (136)
                      ++..+|++++|.......+...|....+...++.+.+
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            9999999999987655433322334444555565544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.00  E-value=2.7e-09  Score=75.19  Aligned_cols=93  Identities=10%  Similarity=-0.028  Sum_probs=79.6

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG  120 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~  120 (136)
                      ..+.+|.+++..|+|.+|+..+++..  +.++.+++.+|.++..+|+|++|++.....+...|....+++.+|.+|..+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence            57889999999999999999998873  4577899999999999999999988665444333456678889999999999


Q ss_pred             ChHHHHHHHHHhhcc
Q 032655          121 NCAQARLWLVSCDEF  135 (136)
Q Consensus       121 ~~~~A~~~y~~AL~~  135 (136)
                      ++++|+.+|+++++.
T Consensus        86 ~~~~A~~~~~~al~~  100 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQ  100 (213)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999999999874

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.00  E-value=5.8e-09  Score=76.52  Aligned_cols=73  Identities=7%  Similarity=0.014  Sum_probs=39.1

Q ss_pred             cCChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhh
Q 032655           19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTS   90 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~e   90 (136)
                      .++++.|+.+.++++.. ++++..+.+|.++..    .|++++|+..+++..- ..++.+.+.+|.++..    .+++++
T Consensus        91 ~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~~~~~~~~~~~  168 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LNDGDGCTILGSLYDAGRGTPKDLKK  168 (273)
T ss_dssp             CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHcCCCCCCCHHH
Confidence            55666666666655554 245555555665555    5566666555544321 1244455555555555    555555


Q ss_pred             hhh
Q 032655           91 VCR   93 (136)
Q Consensus        91 a~~   93 (136)
                      |.+
T Consensus       169 A~~  171 (273)
T 1ouv_A          169 ALA  171 (273)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.98  E-value=9e-10  Score=84.96  Aligned_cols=131  Identities=10%  Similarity=-0.115  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC-h-----------------HHHHHHHHHHhccCChHHHHHHHhcC-
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-P-----------------ADVYMQAQALFLGRHYRRPFHLLNSS-   65 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~-----------------~~~~~la~~l~~~g~~~~A~~~l~~~-   65 (136)
                      ..+.++.+-..+...++|+.|+...++++.+.|+ +                 ..++.+|.|++..|+|.+|+..+++. 
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455666667777889999999999999999983 3                 26788999999999999999988664 


Q ss_pred             cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHH-HHHcCChHHHHHHHHHhhcc
Q 032655           66 KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKA-YEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        66 ~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~-~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+.+.+..+++.+|.++..+|+|++|.......+...|....+...++.+ ....+..++|...|+++|..
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            34567888999999999999999999877665443334455666777877 45567788888888888753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.97  E-value=2.7e-09  Score=70.58  Aligned_cols=88  Identities=7%  Similarity=-0.116  Sum_probs=77.7

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      -.+...++..++++.|+-..++++...| +++.++.+|.++...|++.+|+..+++. .+.+.++..++.+|.++..+|+
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3445667889999999999999999999 8899999999999999999999998665 4467888999999999999999


Q ss_pred             hhhhhhhhhh
Q 032655           88 GTSVCRCSVM   97 (136)
Q Consensus        88 ~~ea~~~~~~   97 (136)
                      +++|++....
T Consensus       101 ~~~A~~~~~~  110 (121)
T 1hxi_A          101 ANAALASLRA  110 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999875543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.96  E-value=3.4e-09  Score=79.49  Aligned_cols=98  Identities=14%  Similarity=0.084  Sum_probs=83.6

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                      +++.++.+|..++..|+|.+|+..+++. ...+.++..++.+|.|+.++|+|++|+......+...|....+++.+|.+|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5677899999999999999999988765 336678899999999999999999998876655444455667888999999


Q ss_pred             HHcCChHHHHHHHHHhhcc
Q 032655          117 EALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       117 ~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+|++++|+..|++|+++
T Consensus        83 ~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999864

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.96  E-value=1.1e-08  Score=77.24  Aligned_cols=127  Identities=9%  Similarity=-0.071  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCCChH-HHHHHH--HHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPA-DVYMQA--QALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~-~~~~la--~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~   84 (136)
                      ...+++-++..|+++.|+-..++++...|+.. .....+  ..+...|++.+|+.++++.. ..+.++..++.+|.|+.+
T Consensus       133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~  212 (291)
T 3mkr_A          133 MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA  212 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34456677888999999999999999988432 222222  33345588999999886643 256778889999999999


Q ss_pred             ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHH-HHHHHHhhcc
Q 032655           85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQA-RLWLVSCDEF  135 (136)
Q Consensus        85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A-~~~y~~AL~~  135 (136)
                      +|++++|+......+...|..+.+++.+|.++..+|+..++ ..++++++++
T Consensus       213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999876654444456677789999999999999875 5788888753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.94  E-value=5.2e-09  Score=79.47  Aligned_cols=81  Identities=11%  Similarity=0.021  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-------ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC------c
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-------DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD------L   72 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~------~   72 (136)
                      .-+..+..-+...+++++|+.+.++++.+.+       .+..++.+|.++...|++++|+..+++.. +.+..      .
T Consensus        48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  127 (406)
T 3sf4_A           48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA  127 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence            3455666777788999999999999887742       23357778999999999999988776542 22222      3


Q ss_pred             chHHHHHHHHHHccC
Q 032655           73 RFRYLAAKCLEELRS   87 (136)
Q Consensus        73 ~~~~l~a~c~~~l~~   87 (136)
                      .+.+.+|.++...|+
T Consensus       128 ~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A          128 RALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC
Confidence            478888999999999

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.93  E-value=2.7e-09  Score=83.64  Aligned_cols=96  Identities=10%  Similarity=0.107  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcCc-----------------ccccCcchHHHHHHHHHHccChhhhhhhhhhhhccc
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSSK-----------------IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLK  102 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~~-----------------l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~  102 (136)
                      +.+..+|.+++..|+|++|+..++++.                 +.+.+..+++.+|.|++++|+|++|++.....+...
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            347889999999999999999886643                 344567899999999999999999998766555444


Q ss_pred             chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          103 MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |..+.+++.+|.+|..+|++++|+.+|++|+++
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            556778899999999999999999999999875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.92  E-value=7.7e-10  Score=72.16  Aligned_cols=80  Identities=14%  Similarity=0.008  Sum_probs=65.9

Q ss_pred             HcCChhhHHHHHHHHhccC---C-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhh
Q 032655           18 SKHLYSSAIFFANEVAALT---N-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~---~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      ..|+++.|+-+.++++.+.   | ++..++.+|.+++..|+|.+|+..+++. .+.+.++..++.+|.|+..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            3688999999999999994   6 5667999999999999999999988765 346788999999999999999999998


Q ss_pred             hhhhh
Q 032655           93 RCSVM   97 (136)
Q Consensus        93 ~~~~~   97 (136)
                      +....
T Consensus        82 ~~~~~   86 (117)
T 3k9i_A           82 ELLLK   86 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.92  E-value=9.6e-09  Score=78.48  Aligned_cols=122  Identities=12%  Similarity=-0.027  Sum_probs=99.9

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccc-c--CcchHHHHHHHHHHccC
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVL-R--DLRFRYLAAKCLEELRS   87 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~-~--~~~~~~l~a~c~~~l~~   87 (136)
                      .....+..++|+.|.-..+.+....| ++ ..|.+|..++..|+|..|+..++...-.+ .  .....+.+|.++..+|+
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence            34556678999999999999998888 45 88999999999999999999998653211 1  12478999999999999


Q ss_pred             hhhhhhhhhhhhcc-c-ch-HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           88 GTSVCRCSVMLRLL-K-MI-SSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        88 ~~ea~~~~~~~~~~-~-~~-~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +++|++.......+ . |. .+.+.+.+|.++.++|+.++|...|++++.
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999877654432 2 43 556889999999999999999999999875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.90  E-value=3.7e-10  Score=71.67  Aligned_cols=84  Identities=12%  Similarity=0.140  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccC------cchHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRD------LRFRYLAAK   80 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~------~~~~~l~a~   80 (136)
                      +..+-..+...++|+.|+-+.++++.+.| ++..++.+|.|++..|+|.+|+..+++. .+.+.+      ..+.+..|.
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~   86 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL   86 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence            34444555556666666666666666666 5555666666666666666666655443 223333      445555566


Q ss_pred             HHHHccChhhhh
Q 032655           81 CLEELRSGTSVC   92 (136)
Q Consensus        81 c~~~l~~~~ea~   92 (136)
                      ++..+|++++|+
T Consensus        87 ~~~~~~~~~~a~   98 (111)
T 2l6j_A           87 AQGAVGSVQIPV   98 (111)
T ss_dssp             HHHHHHCCCCCS
T ss_pred             HHHHHHhHhhhH
Confidence            666666555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.89  E-value=1.8e-08  Score=76.00  Aligned_cols=25  Identities=8%  Similarity=0.005  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhh
Q 032655          109 CFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                      ++.+|.++..+|++++|+.+|++++
T Consensus       198 ~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          198 CIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3344555555555555555555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.88  E-value=1.1e-08  Score=70.99  Aligned_cols=118  Identities=14%  Similarity=0.035  Sum_probs=88.4

Q ss_pred             HHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCc-------ccccCcchHHHHHHHHHHccC
Q 032655           17 VSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSK-------IVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~-------l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      +..|+|+.|.-.++.+.. .|  .+...+.+|.++...|+|++|+..+++..       ..+....+.+.+|.++..+|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            567899999986666544 44  45678899999999999999998886632       122455788999999999999


Q ss_pred             hhhhhhhhhhhh-----cc-cc-hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           88 GTSVCRCSVMLR-----LL-KM-ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        88 ~~ea~~~~~~~~-----~~-~~-~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +++|.+.....+     .+ .+ ..+.+++.+|.++..+|++++|..+|++++++
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999987543211     12 22 45667789999999999999999999999863

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.88  E-value=1.2e-09  Score=71.14  Aligned_cols=85  Identities=7%  Similarity=-0.181  Sum_probs=67.1

Q ss_pred             ccCChHHHHHHHhcC-cc---cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHH
Q 032655           51 LGRHYRRPFHLLNSS-KI---VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQAR  126 (136)
Q Consensus        51 ~~g~~~~A~~~l~~~-~l---~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~  126 (136)
                      ..|+|.+|+..+++. .+   ++.++.+++.+|.++..+|+|++|++.....+...|....+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            368899999988664 33   36778899999999999999999998776554444556778899999999999999999


Q ss_pred             HHHHHhhcc
Q 032655          127 LWLVSCDEF  135 (136)
Q Consensus       127 ~~y~~AL~~  135 (136)
                      .+|+++++.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999864

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.88  E-value=3.4e-08  Score=74.52  Aligned_cols=132  Identities=6%  Similarity=-0.106  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-------ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccc-----
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-------DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVL-----   69 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~-----   69 (136)
                      ++.++-+.....-+...++|+.|+-..++++.+.+       .......+|.++...|+|.+|+..++++. +..     
T Consensus        33 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~  112 (307)
T 2ifu_A           33 DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP  112 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            56677788888889999999999999999998874       14567889999999999999999886642 111     


Q ss_pred             -cCcchHHHHHHHHHHccChhhhhhhhhhhhc-----cc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           70 -RDLRFRYLAAKCLEELRSGTSVCRCSVMLRL-----LK-MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        70 -~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~-----~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                       ....++..+|.++.. |++++|++.....++     +. +..+.++..+|.+|..+|++++|+.+|++|+++
T Consensus       113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             124577889999999 999999875443221     12 234566778999999999999999999999864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.86  E-value=1.1e-08  Score=65.53  Aligned_cols=96  Identities=14%  Similarity=0.090  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~  118 (136)
                      +.++.+|.+++..|++.+|+.++++.. ..+.+....+.+|.++...|++++|.+.........|.....++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            457889999999999999999886642 2456778889999999999999999876554332233445677889999999


Q ss_pred             cCChHHHHHHHHHhhcc
Q 032655          119 LGNCAQARLWLVSCDEF  135 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL~~  135 (136)
                      +|++++|+.+|.++++.
T Consensus        82 ~~~~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALEL   98 (136)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHh
Confidence            99999999999998763

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.85  E-value=1.7e-09  Score=76.16  Aligned_cols=95  Identities=11%  Similarity=-0.005  Sum_probs=71.8

Q ss_pred             HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      ..++|+.|+-.+++++.++| +++.++.+|.++...|+++.+...++                       .+++|+....
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-----------------------~~~eAi~~le   70 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-----------------------MIQEAITKFE   70 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-----------------------HHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-----------------------HHHHHHHHHH
Confidence            35679999999999999999 78888889999999999875555332                       3666665554


Q ss_pred             hhhcccchHhHHHHHHHHHHHHc-----------CChHHHHHHHHHhhcc
Q 032655           97 MLRLLKMISSAICFLRGKAYEAL-----------GNCAQARLWLVSCDEF  135 (136)
Q Consensus        97 ~~~~~~~~~a~i~~l~G~~~~~~-----------~~~~~A~~~y~~AL~~  135 (136)
                      ..+.-.|..+.+++.+|.+|..+           |++++|+++|++||++
T Consensus        71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            43333345566677777777766           5899999999999975

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.85  E-value=2.5e-08  Score=66.30  Aligned_cols=90  Identities=7%  Similarity=0.015  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCc-------chHHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDL-------RFRYLA   78 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~-------~~~~l~   78 (136)
                      -.+.+=..+..+++|+.|+.+.++++.++| ++..++.+|.|++..|+|++|+..+++. .+.+.+.       .+++.+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            445555677889999999999999999999 7888999999999999999999988664 3334433       367788


Q ss_pred             HHHHHHccChhhhhhhhhh
Q 032655           79 AKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        79 a~c~~~l~~~~ea~~~~~~   97 (136)
                      |.++..+|+|++|++....
T Consensus        90 g~~~~~~~~~~~A~~~~~k  108 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHR  108 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            9999999999999876544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.85  E-value=1.1e-08  Score=64.63  Aligned_cols=94  Identities=15%  Similarity=0.000  Sum_probs=76.0

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccch------HhHHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMI------SSAICF  110 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~------~a~i~~  110 (136)
                      +++.++.+|.+++..|+|.+|+..+++. .+.+.++..++.+|.|+..+|+|++|++.....+...|.      ...+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4567889999999999999999988664 346678899999999999999999998865543322222      266778


Q ss_pred             HHHHHHHHcCChHHHHHHHHH
Q 032655          111 LRGKAYEALGNCAQARLWLVS  131 (136)
Q Consensus       111 l~G~~~~~~~~~~~A~~~y~~  131 (136)
                      .+|.++..+|+.++|+..|++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999999988877654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.84  E-value=6.2e-09  Score=80.26  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc-----------------chHHHHHHHHHHccChhhhhhhhhhhhc
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL-----------------RFRYLAAKCLEELRSGTSVCRCSVMLRL  100 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~-----------------~~~~l~a~c~~~l~~~~ea~~~~~~~~~  100 (136)
                      .+.++.+|.+++..|+|.+|+..+++.. +.+.+.                 .+++.+|.|+.++|+|++|++.....+.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3458889999999999999999887642 233333                 3889999999999999999986655443


Q ss_pred             ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          101 LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       101 ~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..|....+++.+|.+|..+|++++|+.+|++|+++
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33455677899999999999999999999999875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.83  E-value=5.5e-08  Score=73.19  Aligned_cols=118  Identities=8%  Similarity=-0.077  Sum_probs=67.9

Q ss_pred             HHcCChhhHHHHHHHHhccCC-ChH-HHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHH-ccChhhhh
Q 032655           17 VSKHLYSSAIFFANEVAALTN-DPA-DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEE-LRSGTSVC   92 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~-~~~-~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~-l~~~~ea~   92 (136)
                      ...++++.|.-..++++.+.| +++ .+..+|.++...|++++|..++++.. +.+.+...+.-.|..... +|++++|.
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            345666666666666666666 454 56666666666666666666665432 122333333222222221 56666665


Q ss_pred             hhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           93 RCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        93 ~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ......+...|....++...|.++..+|+.++|...|++|++
T Consensus       190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            433322222344556667778888888888888888888776

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.82  E-value=1.1e-08  Score=64.19  Aligned_cols=87  Identities=11%  Similarity=0.031  Sum_probs=75.1

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-ccccc--CcchHHHHHHHHHHc-
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLR--DLRFRYLAAKCLEEL-   85 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~--~~~~~~l~a~c~~~l-   85 (136)
                      .+...+...++++.|+-+.++++...| ++..++.+|.+++..|+|++|+..+++. ...+.  +..+++.+|.|+..+ 
T Consensus        11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~   90 (112)
T 2kck_A           11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE   90 (112)
T ss_dssp             GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence            345567788999999999999999999 7788999999999999999999988664 33556  788999999999999 


Q ss_pred             cChhhhhhhhhh
Q 032655           86 RSGTSVCRCSVM   97 (136)
Q Consensus        86 ~~~~ea~~~~~~   97 (136)
                      |++++|.+....
T Consensus        91 ~~~~~A~~~~~~  102 (112)
T 2kck_A           91 GKEVEAEIAEAR  102 (112)
T ss_dssp             SCSHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999999875543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.81  E-value=8.5e-08  Score=72.14  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHhccCC-ChHHHHHHHHHHhc-------cCCh-------HHHHHHHhcCc--ccccCcchHHHHHHHHHHc
Q 032655           23 SSAIFFANEVAALTN-DPADVYMQAQALFL-------GRHY-------RRPFHLLNSSK--IVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus        23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~-------~g~~-------~~A~~~l~~~~--l~~~~~~~~~l~a~c~~~l   85 (136)
                      +.|+...++++..+| +++.|+.+|..+..       .|++       ++|..+++++-  +.+.+...++.+|..+...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            456666666666666 56666666666553       3554       56666664432  2345555666666666666


Q ss_pred             cChhhhhhhhhhhhcccchHhH-HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 RSGTSVCRCSVMLRLLKMISSA-ICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~a~-i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |++++|.+.....+...|.... ++...|.++.++|+.++|...|++|++
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            6666665544333222222222 555566666666666666666666654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=98.81  E-value=9.6e-08  Score=68.44  Aligned_cols=121  Identities=16%  Similarity=0.119  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccC
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      .+..-|..++.--+|++|+|.+.-+++-.|  +--.+++..+|.+|+|.||+-+|.+.+    .....|-.+.|+.++++
T Consensus         4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~~~~--eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~LCy~klKd   77 (242)
T 3kae_A            4 KLIGKICKSIRYRDYETAIFLAACLLPCKP--EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESLCYKKKKD   77 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHC------CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhcccccHHHHHHHHHccCCh--HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHHHHHHHHH
Confidence            345567778889999999999987766444  777889999999999999999998753    34567889999999999


Q ss_pred             hhhhhhhhhh----------hhc----c---cch-HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           88 GTSVCRCSVM----------LRL----L---KMI-SSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        88 ~~ea~~~~~~----------~~~----~---~~~-~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |+.|+.....          .+|    .   .|. ..-.+.++|.++..+|++++|+.+|++...
T Consensus        78 YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A           78 YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence            9999643221          011    0   132 333344789999999999999999998754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.80  E-value=1.9e-07  Score=71.26  Aligned_cols=89  Identities=15%  Similarity=0.090  Sum_probs=64.1

Q ss_pred             HHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcc-cc-hHhHHHHHHHHHHHHcCC
Q 032655           45 QAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLL-KM-ISSAICFLRGKAYEALGN  121 (136)
Q Consensus        45 la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~-~~-~~a~i~~l~G~~~~~~~~  121 (136)
                      +|.+|...|+|.+|..++..... .+.+. ..|..|..+++.|+|++|+......... .| ....+++.+|.++..+|+
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence            45667777788888877766543 33444 7788888888888888877654432211 12 246789999999999999


Q ss_pred             hHHHHHHHHHhhc
Q 032655          122 CAQARLWLVSCDE  134 (136)
Q Consensus       122 ~~~A~~~y~~AL~  134 (136)
                      +++|..+|.+++.
T Consensus       187 ~~eAl~~l~~a~~  199 (282)
T 4f3v_A          187 FTEAERRLTEAND  199 (282)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999863

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.79  E-value=1.5e-08  Score=79.18  Aligned_cols=44  Identities=9%  Similarity=-0.069  Sum_probs=20.8

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHh
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLN   63 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~   63 (136)
                      +.++.|+-..++++...| .+..+..+|.++...|++.+|+..++
T Consensus       227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  271 (472)
T 4g1t_A          227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK  271 (472)
T ss_dssp             ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            344455555555555555 34444555555555555555555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.78  E-value=2.2e-08  Score=78.26  Aligned_cols=123  Identities=12%  Similarity=-0.032  Sum_probs=92.6

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhc---cCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFL---GRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~---~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      ....+..++|+.|+-+.++++.+.| +|+..+.+|.+++.   .|++.+|+..+++. .+.+.++.....+|.++..+++
T Consensus       145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~  224 (472)
T 4g1t_A          145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE  224 (472)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence            3334455689999999999999999 78888888888655   46778888877654 4466777888888888887765


Q ss_pred             h----hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           88 G----TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        88 ~----~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .    ++|.......+...|....++..+|.+|..+|++++|+..|++|++.
T Consensus       225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY  276 (472)
T ss_dssp             -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            4    45554433333334556677889999999999999999999999864

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.76  E-value=1.2e-07  Score=68.07  Aligned_cols=112  Identities=13%  Similarity=0.058  Sum_probs=89.7

Q ss_pred             ChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCccccc---CcchHHHHHHHHHH----ccChh
Q 032655           21 LYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLR---DLRFRYLAAKCLEE----LRSGT   89 (136)
Q Consensus        21 ~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~---~~~~~~l~a~c~~~----l~~~~   89 (136)
                      +++.|+.|.+++.. .++++..+.+|.+|..    .+++.+|+..+++..-...   ++.+.+.+|.++..    .++++
T Consensus        68 ~~~~A~~~~~~A~~-~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~  146 (212)
T 3rjv_A           68 DYPQARQLAEKAVE-AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV  146 (212)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred             CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence            89999999999943 2488999999999998    8999999999876542112   37899999999999    88999


Q ss_pred             hhhhhhhhhhcccchHhHHHHHHHHHHHHc-C-----ChHHHHHHHHHhhc
Q 032655           90 SVCRCSVMLRLLKMISSAICFLRGKAYEAL-G-----NCAQARLWLVSCDE  134 (136)
Q Consensus        90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~-~-----~~~~A~~~y~~AL~  134 (136)
                      +|........+. +..+..++.+|.+|... |     +.++|+.+|++|.+
T Consensus       147 ~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          147 KASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            998766544332 12334678999999875 3     89999999999975

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.74  E-value=2.1e-08  Score=63.87  Aligned_cols=61  Identities=18%  Similarity=0.129  Sum_probs=41.9

Q ss_pred             CC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           36 TN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        36 ~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      +| ++..++.+|.+++..|+|.+|+..+++. .+.+.++..++.+|.|+.++|++++|++...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~   65 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA   65 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45 5667777788888888888887777554 3355666777777777777777777776544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.72  E-value=4.3e-09  Score=84.93  Aligned_cols=96  Identities=10%  Similarity=0.006  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~  118 (136)
                      +.++.+|.+++..|+|++|+..++++ .+.+.+...++.+|.|+.++|+|++|++.....+...|..+..++.+|.+|..
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34566788999999999999988665 34667889999999999999999999987665544445567788899999999


Q ss_pred             cCChHHHHHHHHHhhcc
Q 032655          119 LGNCAQARLWLVSCDEF  135 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL~~  135 (136)
                      +|++++|+++|++|+++
T Consensus        87 ~g~~~eA~~~~~~al~~  103 (477)
T 1wao_1           87 LGKFRAALRDYETVVKV  103 (477)
T ss_dssp             HTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999999874

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.69  E-value=2.1e-07  Score=63.94  Aligned_cols=89  Identities=8%  Similarity=-0.030  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHH-HhccCCh--HHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQA-LFLGRHY--RRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~-l~~~g~~--~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      +..+..-+...++++.|+.+.++++.+.| ++..++.+|.+ ++..|++  .+|+..+++. ...+.++..++.+|.+++
T Consensus        47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  126 (177)
T 2e2e_A           47 WALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF  126 (177)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44556677889999999999999999999 78889999999 7899999  9999988664 335678899999999999


Q ss_pred             HccChhhhhhhhhh
Q 032655           84 ELRSGTSVCRCSVM   97 (136)
Q Consensus        84 ~l~~~~ea~~~~~~   97 (136)
                      .+|++++|......
T Consensus       127 ~~g~~~~A~~~~~~  140 (177)
T 2e2e_A          127 MQANYAQAIELWQK  140 (177)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHH
Confidence            99999999876543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.68  E-value=9.3e-08  Score=63.02  Aligned_cols=96  Identities=9%  Similarity=-0.019  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc------chHHHHHHHHHHccChhhhhhhhhhh------hcccchHh
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL------RFRYLAAKCLEELRSGTSVCRCSVML------RLLKMISS  106 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~------~~~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a  106 (136)
                      ...+.+|.+++..|+|.+|+..+++.. +.+...      .+.+.+|.++...|++++|.+.....      ..+.+..+
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            357889999999999999999886643 222222      47899999999999999998754321      11223456


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          107 AICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       107 ~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+++.+|.++..+|++++|+.+|++++++
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            67789999999999999999999999864

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.66  E-value=5.1e-07  Score=68.71  Aligned_cols=122  Identities=11%  Similarity=-0.047  Sum_probs=87.2

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-C-hH----HHHHHHHHHhccCChHHHHHHHhcCc-ccccC------cchHHHHHH
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-D-PA----DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD------LRFRYLAAK   80 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~-~~----~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~------~~~~~l~a~   80 (136)
                      .-++..++++.|+-++++++...| + +.    ....+|.++...|++.+|...+++.. +.+..      ..+.+..|.
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            445678999999999999998887 2 22    35678999999999999998886642 11211      234678899


Q ss_pred             HHHHccChhhhhhhhhhhh------cc--cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           81 CLEELRSGTSVCRCSVMLR------LL--KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        81 c~~~l~~~~ea~~~~~~~~------~~--~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++...|++++|++.....+      .+  .|..+..+..+|.++..+|++++|..+|.+++++
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  164 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9999999999976433211      11  1344555667888888888888888888888753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.65  E-value=2.6e-07  Score=62.39  Aligned_cols=110  Identities=13%  Similarity=-0.002  Sum_probs=89.0

Q ss_pred             CChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhhhhhhh
Q 032655           20 HLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTSVCRCS   95 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~ea~~~~   95 (136)
                      .+++.|+.|.+++.... +++..  +|.+|...+.+.+|+..++++- ...++.+.+.+|.++..    .+++++|....
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~--lg~~y~~g~~~~~A~~~~~~Aa-~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC--LSLVSNSQINKQKLFQYLSKAC-ELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH--HHHHTCTTSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh--HHHHHHcCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            46889999999998775 33334  9999999999999999887653 24688899999999999    89999998765


Q ss_pred             hhhhcccchHhHHHHHHHHHHHH----cCChHHHHHHHHHhhcc
Q 032655           96 VMLRLLKMISSAICFLRGKAYEA----LGNCAQARLWLVSCDEF  135 (136)
Q Consensus        96 ~~~~~~~~~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL~~  135 (136)
                      ....+.  ..+..++.+|.+|..    .++.++|+++|++|.+.
T Consensus        85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            543321  234567899999999    99999999999999753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.62  E-value=2.9e-07  Score=70.12  Aligned_cols=125  Identities=10%  Similarity=-0.047  Sum_probs=93.8

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC---ChH----HHHHHHHHHhccCChHHHHHHHhcCc-cc--------ccCcch
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN---DPA----DVYMQAQALFLGRHYRRPFHLLNSSK-IV--------LRDLRF   74 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~---~~~----~~~~la~~l~~~g~~~~A~~~l~~~~-l~--------~~~~~~   74 (136)
                      .+-.-+...|+++.|+-+.++++.+.|   ++.    ....+|.++...|+|.+|...+++.. +.        +....+
T Consensus        58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  137 (373)
T 1hz4_A           58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL  137 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence            344556778999999999999999876   222    25778999999999999999886532 11        112345


Q ss_pred             HHHHHHHHHHccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           75 RYLAAKCLEELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        75 ~~l~a~c~~~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ...+|.++...|++++|.......+.     +.+.....+..+|.++...|++++|..++.+++.+
T Consensus       138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            67799999999999999875432211     12223456678999999999999999999998753

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.62  E-value=8.8e-08  Score=58.40  Aligned_cols=79  Identities=9%  Similarity=-0.008  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL  119 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~  119 (136)
                      .++.+|.+++..|+|.+|+..+++. ...+.++...+.+|.++..+|++++|.......+...|....++..+|.++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            3444555555555555555544332 122334444555555555555555554433322221222333444555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.60  E-value=1.1e-07  Score=66.87  Aligned_cols=89  Identities=15%  Similarity=0.066  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCCC-h------------HHHHHHHHHHhccCChHHHHHHHhcC-cc------
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTND-P------------ADVYMQAQALFLGRHYRRPFHLLNSS-KI------   67 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~------------~~~~~la~~l~~~g~~~~A~~~l~~~-~l------   67 (136)
                      .+-..-......++|++|+...++++.+.|+ |            ..++.+|.|+...|+|++|+...++. .+      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            3444445566789999999999999999995 1            16888999999999999999988654 34      


Q ss_pred             -cccCcchH----HHHHHHHHHccChhhhhhhhh
Q 032655           68 -VLRDLRFR----YLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        68 -~~~~~~~~----~l~a~c~~~l~~~~ea~~~~~   96 (136)
                       .+.+...+    |..|.++..+|+|+||+....
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~  126 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK  126 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence             56777888    999999999999999987554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.60  E-value=4.7e-07  Score=74.78  Aligned_cols=114  Identities=7%  Similarity=-0.094  Sum_probs=98.6

Q ss_pred             hhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC--ChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc-Chhhhhhhhh
Q 032655           22 YSSAIFFANEVAALTN-DPADVYMQAQALFLGR--HYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR-SGTSVCRCSV   96 (136)
Q Consensus        22 ~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g--~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~-~~~ea~~~~~   96 (136)
                      +++|+-+.++++..+| +...|++.++++...|  +|.+++..+++. ..++++..+++-.+.++..+| .++++++...
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            9999999999999999 8999999999999999  669999988664 457789999999999999999 8988887666


Q ss_pred             hhhcccchHhHHHHHHHHHHHHc--------------CChHHHHHHHHHhhcc
Q 032655           97 MLRLLKMISSAICFLRGKAYEAL--------------GNCAQARLWLVSCDEF  135 (136)
Q Consensus        97 ~~~~~~~~~a~i~~l~G~~~~~~--------------~~~~~A~~~y~~AL~~  135 (136)
                      ..+...|...++++.+|.++.++              +.+++|+++|.+|+++
T Consensus       169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence            55545566778889999999886              5679999999999864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.59  E-value=4e-07  Score=55.35  Aligned_cols=80  Identities=11%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~   84 (136)
                      +-+..+-..+...++++.|+-+.++++...| ++..++.+|.+++..|++++|+..+++. .+.+.++...+.+|.++..
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            3455666778889999999999999999999 7888999999999999999999988664 3456788899999999887


Q ss_pred             cc
Q 032655           85 LR   86 (136)
Q Consensus        85 l~   86 (136)
                      +|
T Consensus        90 ~g   91 (91)
T 1na3_A           90 QG   91 (91)
T ss_dssp             HC
T ss_pred             cC
Confidence            65

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.58  E-value=3e-07  Score=68.93  Aligned_cols=100  Identities=14%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             CC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh-----------------
Q 032655           36 TN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV-----------------   96 (136)
Q Consensus        36 ~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~-----------------   96 (136)
                      .| +++..+.+|..+...|++.+|+..+++. ...+.++..++.+|.++.++|++++|+....                 
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            37 5667899999999999999999999765 3467889999999999999999999963210                 


Q ss_pred             h-----------------hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           97 M-----------------LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        97 ~-----------------~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .                 .+...|....+++.+|.++..+|++++|+..|.++|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            0                 01124667778899999999999999999999999864

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.56  E-value=1.2e-06  Score=69.80  Aligned_cols=111  Identities=12%  Similarity=0.039  Sum_probs=65.5

Q ss_pred             CChhhHHHHHHHHhccCCChHHHHHHHHHHhccC---ChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhhhh
Q 032655           20 HLYSSAIFFANEVAALTNDPADVYMQAQALFLGR---HYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTSVC   92 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g---~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~ea~   92 (136)
                      ++++.|+.|.+++... ++++..+.+|.+++..|   ++++|+..+++.. ...++.+.+.+|.++..    .+++++|.
T Consensus       310 ~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~  387 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ-GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA-AKGEKAAQFNLGNALLQGKGVKKDEQQAA  387 (490)
T ss_dssp             CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            4555555555555443 24445555565555544   4555555554432 12345556666666666    56666665


Q ss_pred             hhhhhhhcccchHhHHHHHHHHHHHH----cCChHHHHHHHHHhhc
Q 032655           93 RCSVMLRLLKMISSAICFLRGKAYEA----LGNCAQARLWLVSCDE  134 (136)
Q Consensus        93 ~~~~~~~~~~~~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL~  134 (136)
                      +......+.  ..+..++.+|.+|..    .+++++|..+|++|++
T Consensus       388 ~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  431 (490)
T 2xm6_A          388 IWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST  431 (490)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            543332221  134566788999988    8899999999998875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.54  E-value=1.2e-07  Score=60.95  Aligned_cols=75  Identities=5%  Similarity=-0.100  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655           23 SSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~   97 (136)
                      ++|+-..++++...| ++..++.+|.+++..|+|.+|+..+++. .+.+.+...++.+|.|+..+|++++|......
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            468889999999999 7888999999999999999999988664 34567788899999999999999999876554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.1e-06  Score=67.95  Aligned_cols=62  Identities=15%  Similarity=-0.018  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHccChhhhhhhhhh------hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           74 FRYLAAKCLEELRSGTSVCRCSVM------LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        74 ~~~l~a~c~~~l~~~~ea~~~~~~------~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +...+|..+.+.|+|++|.+....      ..++.+....++.+.|.+|..+|++++|...|++|+.+
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  204 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA  204 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            455677777777888777653321      12244567777889999999999999999999999864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.54  E-value=2.1e-07  Score=59.83  Aligned_cols=68  Identities=16%  Similarity=-0.013  Sum_probs=51.6

Q ss_pred             cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           68 VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+.++..++.+|.++...|++++|+......+...|.....++.+|.+|..+|++++|+.+|++++++
T Consensus        15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45677888888888888888888887655443333445567788888888888888888888888753

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.52  E-value=2.5e-06  Score=67.87  Aligned_cols=73  Identities=7%  Similarity=-0.010  Sum_probs=57.6

Q ss_pred             cCChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhh
Q 032655           19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTS   90 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~e   90 (136)
                      .++++.|+.|.+++... ++++..+.+|.+|..    .+++.+|+..+++.. ...++.+.+.+|.++..    .+++++
T Consensus        56 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~~~~~  133 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKGLPQAQQNLGVMYHEGNGVKVDKAE  133 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            67888888888888765 577888888888888    888888888886643 23577788888888888    788888


Q ss_pred             hhh
Q 032655           91 VCR   93 (136)
Q Consensus        91 a~~   93 (136)
                      |+.
T Consensus       134 A~~  136 (490)
T 2xm6_A          134 SVK  136 (490)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.46  E-value=2.5e-06  Score=67.94  Aligned_cols=71  Identities=11%  Similarity=-0.090  Sum_probs=50.0

Q ss_pred             ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc----CChHHHHHHHhcCcccccCcchHHHHHHH-H--HHccChhhhh
Q 032655           21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLG----RHYRRPFHLLNSSKIVLRDLRFRYLAAKC-L--EELRSGTSVC   92 (136)
Q Consensus        21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~----g~~~~A~~~l~~~~l~~~~~~~~~l~a~c-~--~~l~~~~ea~   92 (136)
                      +++.|+.|.+++....| +...++.+|.+|...    +++.+|+..+++..  +.++.+.+.+|.+ +  ...+++++|.
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~  271 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMM  271 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence            77778888887777776 455557777777665    67777777776654  6777777777777 3  4566777765


Q ss_pred             h
Q 032655           93 R   93 (136)
Q Consensus        93 ~   93 (136)
                      +
T Consensus       272 ~  272 (452)
T 3e4b_A          272 K  272 (452)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.41  E-value=3.6e-06  Score=68.51  Aligned_cols=121  Identities=11%  Similarity=-0.033  Sum_probs=93.8

Q ss_pred             HHHHHcCChhhHHHHHHHHhccC-----C-ChH---HHHHHHHHHhccCChHHHHHHHhcCc------ccccCc---chH
Q 032655           14 RDCVSKHLYSSAIFFANEVAALT-----N-DPA---DVYMQAQALFLGRHYRRPFHLLNSSK------IVLRDL---RFR   75 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~-----~-~~~---~~~~la~~l~~~g~~~~A~~~l~~~~------l~~~~~---~~~   75 (136)
                      .....+|+|++|+-..++++++.     | +|.   ....+|.+|...|+|++|..+.++..      +-+.||   ...
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            34557899999999999999875     2 333   57889999999999999999876632      112343   568


Q ss_pred             HHHHHHHHHccChhhhhhhhhh-------hh-cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           76 YLAAKCLEELRSGTSVCRCSVM-------LR-LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        76 ~l~a~c~~~l~~~~ea~~~~~~-------~~-~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +.+|..+..+|+|+||+.-...       .+ .+.|.-+.+.-+++.++..++.+++|..-|++|.+
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999764322       12 14466777777999999999999999999998864

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.40  E-value=2.4e-06  Score=65.64  Aligned_cols=75  Identities=5%  Similarity=-0.159  Sum_probs=43.5

Q ss_pred             cCCh-hhHHHHHHHHhccCC-ChHHHHHHHHHHhccC--ChHHHHHHHhcCc-ccccCcchHHHHHHHH----HHc---c
Q 032655           19 KHLY-SSAIFFANEVAALTN-DPADVYMQAQALFLGR--HYRRPFHLLNSSK-IVLRDLRFRYLAAKCL----EEL---R   86 (136)
Q Consensus        19 ~~~~-~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g--~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~----~~l---~   86 (136)
                      .+.+ +.|+-..++++.++| ....|+..+.++...|  .+++++.+++..- ..+++..+++..+.++    ..+   +
T Consensus        45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence            4444 356666666666666 4555666666666666  6666666554432 2456666666666666    555   4


Q ss_pred             Chhhhhh
Q 032655           87 SGTSVCR   93 (136)
Q Consensus        87 ~~~ea~~   93 (136)
                      +++++++
T Consensus       125 ~~~~EL~  131 (306)
T 3dra_A          125 DPYREFD  131 (306)
T ss_dssp             CTHHHHH
T ss_pred             CHHHHHH
Confidence            5555543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.37  E-value=8.2e-06  Score=62.66  Aligned_cols=127  Identities=7%  Similarity=-0.096  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHH----hcc---CChHHHHHHHhcC-cccccCcchHHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQAL----FLG---RHYRRPFHLLNSS-KIVLRDLRFRYLA   78 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l----~~~---g~~~~A~~~l~~~-~l~~~~~~~~~l~   78 (136)
                      ..|..+-..+....+++|+-+.++++..+| +...|++.+.++    ...   +++.+++.++++. ..++++..+++-.
T Consensus        71 n~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R  150 (306)
T 3dra_A           71 IYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYR  150 (306)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            344444433322389999999999999999 899999999999    766   7899999988665 3478999999999


Q ss_pred             HHHHHHccChh--hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChH------HHHHHHHHhhc
Q 032655           79 AKCLEELRSGT--SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCA------QARLWLVSCDE  134 (136)
Q Consensus        79 a~c~~~l~~~~--ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~------~A~~~y~~AL~  134 (136)
                      +.++..+|.++  ++++.....++..|..-+++..+|.+...+++..      ++++++.++++
T Consensus       151 ~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~  214 (306)
T 3dra_A          151 KWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV  214 (306)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence            99999999998  7776555444444556678899999999987532      35666666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.36  E-value=3.1e-06  Score=67.35  Aligned_cols=107  Identities=14%  Similarity=-0.012  Sum_probs=67.5

Q ss_pred             CChhhHHHHHHHHhccCCChHHHHHHHHH-H--hccCChHHHHHHHhcCcccccCcchHHHHHHHHHHcc-----Chhhh
Q 032655           20 HLYSSAIFFANEVAALTNDPADVYMQAQA-L--FLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELR-----SGTSV   91 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~~~~~~~~la~~-l--~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~-----~~~ea   91 (136)
                      .+++.|+.|.+++.  .++++..+.+|.+ +  ...|++.+|+..+++.. ...++.+.+.+|.++. .|     ++++|
T Consensus       231 ~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          231 PDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AADQPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             CCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             CCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            47778888888876  2377788888887 4  46778888888776643 2356777788888777 44     77777


Q ss_pred             hhhhhhhhcccchHhHHHHHHHHHHHH----cCChHHHHHHHHHhh
Q 032655           92 CRCSVMLRLLKMISSAICFLRGKAYEA----LGNCAQARLWLVSCD  133 (136)
Q Consensus        92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL  133 (136)
                      ........   +..+...+.+|.+|..    ..++++|+.+|++|.
T Consensus       307 ~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  349 (452)
T 3e4b_A          307 EAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA  349 (452)
T ss_dssp             HHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence            65433222   2233444555655555    225556666665554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.35  E-value=2e-06  Score=69.06  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=77.2

Q ss_pred             hhHHHHHHHHhccCC-ChHHHHHHHHHHhc-------cCChH-------HHHHHHhcCc--ccccCcchHHHHHHHHHHc
Q 032655           23 SSAIFFANEVAALTN-DPADVYMQAQALFL-------GRHYR-------RPFHLLNSSK--IVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus        23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~-------~g~~~-------~A~~~l~~~~--l~~~~~~~~~l~a~c~~~l   85 (136)
                      +.|+...++++..+| +++-|+.+|..+..       .|++.       +|..+++++-  +.+.+...++.+|..+.+.
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            367788888888888 77788888888775       68876       7888776653  3566777888888888888


Q ss_pred             cChhhhhhhhhhhhcccchH-hHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 RSGTSVCRCSVMLRLLKMIS-SAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~-a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |++++|.+.....+...|.. +.++...|.++.++|+.++|...|.+|++
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            88888876544332222221 23555666666666666666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.34  E-value=5.3e-06  Score=68.45  Aligned_cols=119  Identities=8%  Similarity=-0.127  Sum_probs=99.4

Q ss_pred             HHcCC-hhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC----------hHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655           17 VSKHL-YSSAIFFANEVAALTN-DPADVYMQAQALFLGRH----------YRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus        17 l~~~~-~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~----------~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      ...+. .++|+-+.++++.++| +...|++.+.++...|+          +++++..+++. ..++++..+++..+-++.
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            33444 4677999999999999 78899999999999999          99999988665 347789999999999999


Q ss_pred             Hcc--ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC-ChHHHHHHHHHhhcc
Q 032655           84 ELR--SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG-NCAQARLWLVSCDEF  135 (136)
Q Consensus        84 ~l~--~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~-~~~~A~~~y~~AL~~  135 (136)
                      +++  +|+++++.....++..|....+|..+|-+...+| ..++|++++.++++.
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~  173 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  173 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            999  6699887665544433446677899999999999 999999999999864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.32  E-value=3.1e-06  Score=68.35  Aligned_cols=109  Identities=12%  Similarity=0.050  Sum_probs=60.7

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      +-..|.+.|+|++|..+.+++       +++..+|.|+++.|+|..|++..++.    .++..+--...+|.+.|+|+.|
T Consensus       128 IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA  196 (449)
T 1b89_A          128 VGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLA  196 (449)
T ss_dssp             ---------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHH
Confidence            334455556666666655544       35566666666666666666655554    2445555555666666666666


Q ss_pred             hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..... .+...|..   ..-+..+|++.|++++|+..++++|.+
T Consensus       197 ~~~~l-~L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          197 QMCGL-HIVVHADE---LEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             HHTTT-TTTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHH-HHHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            43222 11111211   123568899999999999999999864

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.32  E-value=1.3e-06  Score=55.34  Aligned_cols=66  Identities=18%  Similarity=-0.012  Sum_probs=42.1

Q ss_pred             ccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           69 LRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +.++..++.+|.+++++|+|++|+......+...|....+++.+|.+|..+|++++|+.+|++|++
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455666777777777777777776655443332333445666777777777777777777777765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.30  E-value=6e-06  Score=64.23  Aligned_cols=129  Identities=9%  Similarity=-0.082  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcC--------ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC--hHHHHHHHhcC-cccccCcch
Q 032655            7 EKLRGLVRDCVSKH--------LYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH--YRRPFHLLNSS-KIVLRDLRF   74 (136)
Q Consensus         7 ~~lr~~i~~~l~~~--------~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~--~~~A~~~l~~~-~l~~~~~~~   74 (136)
                      ...|..+-..+...        .+++++-+.++++..+| ++..|++.+.++...|.  +.+++.++.+. ..++++..+
T Consensus        67 Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~A  146 (331)
T 3dss_A           67 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC  146 (331)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHH
Confidence            34455555544432        37899999999999999 99999999999999995  89999988664 447899999


Q ss_pred             HHHHHHHHHHccC-hhhhhhhhhhhhcccchHhHHHHHHHHHHHHc--------------CChHHHHHHHHHhhcc
Q 032655           75 RYLAAKCLEELRS-GTSVCRCSVMLRLLKMISSAICFLRGKAYEAL--------------GNCAQARLWLVSCDEF  135 (136)
Q Consensus        75 ~~l~a~c~~~l~~-~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~--------------~~~~~A~~~y~~AL~~  135 (136)
                      ++-.+.++..+|. ++++++.....+...|...+++..+|.+...+              +.++++++++.+|+..
T Consensus       147 W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~  222 (331)
T 3dss_A          147 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  222 (331)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence            9999999999999 57877765544444455677788888888887              5578999999999853

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.28  E-value=4.1e-06  Score=68.20  Aligned_cols=91  Identities=11%  Similarity=0.024  Sum_probs=70.4

Q ss_pred             HHHHHhccCChHHHHHHHhcCc------ccccCc---chHHHHHHHHHHccChhhhhhhhhh-------hhc-ccchHhH
Q 032655           45 QAQALFLGRHYRRPFHLLNSSK------IVLRDL---RFRYLAAKCLEELRSGTSVCRCSVM-------LRL-LKMISSA  107 (136)
Q Consensus        45 la~~l~~~g~~~~A~~~l~~~~------l~~~~~---~~~~l~a~c~~~l~~~~ea~~~~~~-------~~~-~~~~~a~  107 (136)
                      .+..+...|+|++|..++++..      +-+.|+   ...+.+|..|..+|+|++|+.-...       .+. ..|.-+.
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            3455778999999988775521      222343   6789999999999999999764322       122 4577788


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          108 ICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       108 i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+..+|.+|..+|++++|...|++||++
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            8889999999999999999999999975

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.28  E-value=6.6e-06  Score=66.03  Aligned_cols=121  Identities=8%  Similarity=-0.094  Sum_probs=81.3

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-Ch-HHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHH-HHHccChhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DP-ADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKC-LEELRSGTS   90 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~-~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c-~~~l~~~~e   90 (136)
                      .....|+++.|.-..++++...| ++ ..+..+|..+.+.|++++|..+++++.- .+.+.....-.|.. +...|++++
T Consensus       330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~  409 (530)
T 2ooe_A          330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV  409 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH
Confidence            34456788888888888888877 44 3677778888888888888887766432 22223332322322 335788888


Q ss_pred             hhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           91 VCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        91 a~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |.......+...|....++...|.++.++|+.++|...|++|+..
T Consensus       410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            766544333333445667778888888899999999999988753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.23  E-value=2.5e-06  Score=53.04  Aligned_cols=84  Identities=10%  Similarity=-0.104  Sum_probs=57.0

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcCc-ccccCcc-hHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLR-FRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL  119 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~-~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~  119 (136)
                      .+..|.+++..|+|++|+..+++.. ..+.++. .++.+|.|+..+|++++|++.....+...|....+++.        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            3567889999999999998886643 3556777 88899999999999999987665443322322332211        


Q ss_pred             CChHHHHHHHHHhh
Q 032655          120 GNCAQARLWLVSCD  133 (136)
Q Consensus       120 ~~~~~A~~~y~~AL  133 (136)
                      ++..+|..+|++++
T Consensus        75 ~~~~~a~~~~~~~~   88 (99)
T 2kc7_A           75 KMVMDILNFYNKDM   88 (99)
T ss_dssp             HHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            45556666666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.22  E-value=7.1e-06  Score=65.83  Aligned_cols=86  Identities=10%  Similarity=0.004  Sum_probs=63.2

Q ss_pred             hccCChHHHHHHHhcC------cccccCc---chHHHHHHHHHHccChhhhhhhhhh-------hhc-ccchHhHHHHHH
Q 032655           50 FLGRHYRRPFHLLNSS------KIVLRDL---RFRYLAAKCLEELRSGTSVCRCSVM-------LRL-LKMISSAICFLR  112 (136)
Q Consensus        50 ~~~g~~~~A~~~l~~~------~l~~~~~---~~~~l~a~c~~~l~~~~ea~~~~~~-------~~~-~~~~~a~i~~l~  112 (136)
                      ...|+|++|..++++.      .+-+.|+   ...+.+|..|..+|+|++|+.-...       .+. ..|.-+..+..+
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            3457778877766542      1222343   5677889999999999998764322       121 356777788899


Q ss_pred             HHHHHHcCChHHHHHHHHHhhcc
Q 032655          113 GKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       113 G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |.+|..+|++++|...|++||++
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHH
Confidence            99999999999999999999976

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.20  E-value=1.7e-05  Score=62.18  Aligned_cols=113  Identities=6%  Similarity=-0.148  Sum_probs=66.6

Q ss_pred             hhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc-C-ChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh--------
Q 032655           22 YSSAIFFANEVAALTN-DPADVYMQAQALFLG-R-HYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT--------   89 (136)
Q Consensus        22 ~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~-g-~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~--------   89 (136)
                      +++++-+.++++..+| +...|++.+.++... | ++.+++.++++. ..++++..+++-.+-++..+|.++        
T Consensus       105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~  184 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWG  184 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHH
Confidence            5555555555555555 555555555555554 4 555555555332 234455555555555555555555        


Q ss_pred             hhhhhhhhhhcccchHhHHHHHHHHHHHHcCC-------hHHHHHHHHHhhc
Q 032655           90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGN-------CAQARLWLVSCDE  134 (136)
Q Consensus        90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~-------~~~A~~~y~~AL~  134 (136)
                      ++++.....+...|..-+++..+|.+..++++       .++++++++++++
T Consensus       185 eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~  236 (349)
T 3q7a_A          185 SELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH  236 (349)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence            33322222222334566778888999988887       6888888888875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.19  E-value=2.3e-05  Score=60.97  Aligned_cols=126  Identities=8%  Similarity=-0.142  Sum_probs=100.5

Q ss_pred             HHHHHHHHHcCChh-hHHHHHHHHhccCC-ChHHHHHHHHHHhccCC----------hHHHHHHHhcCc-ccccCcchHH
Q 032655           10 RGLVRDCVSKHLYS-SAIFFANEVAALTN-DPADVYMQAQALFLGRH----------YRRPFHLLNSSK-IVLRDLRFRY   76 (136)
Q Consensus        10 r~~i~~~l~~~~~~-~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~----------~~~A~~~l~~~~-l~~~~~~~~~   76 (136)
                      +..|......+.++ .|+-+.++++.++| +...|++-+.++...|.          +.+++.++...- .++++..+++
T Consensus        33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~  112 (331)
T 3dss_A           33 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH  112 (331)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            34444455677777 79999999999999 77889999999988776          688888886643 3679999999


Q ss_pred             HHHHHHHHccC--hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCC-hHHHHHHHHHhhcc
Q 032655           77 LAAKCLEELRS--GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGN-CAQARLWLVSCDEF  135 (136)
Q Consensus        77 l~a~c~~~l~~--~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~-~~~A~~~y~~AL~~  135 (136)
                      ..+.++..+++  ++++++.....++..|-.-.++..+|-+...+|. .+++++++.++++.
T Consensus       113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~  174 (331)
T 3dss_A          113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  174 (331)
T ss_dssp             HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence            99999999995  7888775554443334456678999999999999 59999999998863

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.13  E-value=1.2e-05  Score=64.28  Aligned_cols=90  Identities=11%  Similarity=-0.057  Sum_probs=64.1

Q ss_pred             HHHHhccCChHHHHHHHhcCc------ccccC---cchHHHHHHHHHHccChhhhhhhhhh-------hhc-ccchHhHH
Q 032655           46 AQALFLGRHYRRPFHLLNSSK------IVLRD---LRFRYLAAKCLEELRSGTSVCRCSVM-------LRL-LKMISSAI  108 (136)
Q Consensus        46 a~~l~~~g~~~~A~~~l~~~~------l~~~~---~~~~~l~a~c~~~l~~~~ea~~~~~~-------~~~-~~~~~a~i  108 (136)
                      ..-+...|+|++|+.+.++..      +.+.|   ......+|..|..+|+|++|+.....       .+. ..|.-+..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344556677777776654321      12233   35677888888888999988764322       121 34677777


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          109 CFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ++.+|.+|..+|++++|...|++||++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            889999999999999999999999975

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.05  E-value=2e-05  Score=48.73  Aligned_cols=64  Identities=8%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChH-HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchH
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPA-DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFR   75 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~-~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~   75 (136)
                      ....++..++|+.|+-..++++...| ++. .++.+|.+++..|++.+|+..+++. .+.+.++..+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            44566778999999999999999999 778 8999999999999999999988765 3355666554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.05  E-value=2.1e-06  Score=69.39  Aligned_cols=103  Identities=6%  Similarity=-0.135  Sum_probs=33.2

Q ss_pred             HcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655           18 SKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~   97 (136)
                      ..|+|++|+-+-++.....|++.--.-++.||.+.|++.++..+++..     +...++..|.+|++.|+|++|..... 
T Consensus        73 ~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~p-----n~~a~~~IGd~~~~~g~yeeA~~~Y~-  146 (449)
T 1b89_A           73 TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP-----NNAHIQQVGDRCYDEKMYDAAKLLYN-  146 (449)
T ss_dssp             ------------------------------------CHHHHTTTTTCC---------------------CTTTHHHHHH-
T ss_pred             hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCC-----cHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence            344444444444444433223222333444555555555554444431     12344555555555555555543322 


Q ss_pred             hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                             .++-+..+|.++-++|++++|+++|++|-
T Consensus       147 -------~a~n~~~LA~~L~~Lg~yq~AVea~~KA~  175 (449)
T 1b89_A          147 -------NVSNFGRLASTLVHLGEYQAAVDGARKAN  175 (449)
T ss_dssp             -------HTTCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             -------HhhhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence                   22345578999999999999999999884

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.03  E-value=1.7e-05  Score=61.02  Aligned_cols=115  Identities=11%  Similarity=0.064  Sum_probs=85.7

Q ss_pred             CChhhHHHHHHHHhccCC----C---hHHHHHHHHHHhccCChHHHHHHHhcCcc-------cccCcchHHHHHHHHHHc
Q 032655           20 HLYSSAIFFANEVAALTN----D---PADVYMQAQALFLGRHYRRPFHLLNSSKI-------VLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~----~---~~~~~~la~~l~~~g~~~~A~~~l~~~~l-------~~~~~~~~~l~a~c~~~l   85 (136)
                      ++++.|+.+.++++...+    .   ......+|.++...|+|.+|+.++++...       .+....+....|++|..+
T Consensus       109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
T 4b4t_Q          109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL  188 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence            667777777777766553    1   23467799999999999999998865321       112346889999999999


Q ss_pred             cChhhhhhhhhhh------hc-ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 RSGTSVCRCSVML------RL-LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 ~~~~ea~~~~~~~------~~-~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |+|++|.......      .. +....+.++...|.++...+++++|..+|.++++
T Consensus       189 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          189 RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999997654321      11 1234566777889999999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.02  E-value=5.4e-05  Score=59.26  Aligned_cols=115  Identities=9%  Similarity=-0.057  Sum_probs=96.9

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC-ChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc-c-Chhhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGR-HYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL-R-SGTSVCRC   94 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g-~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l-~-~~~ea~~~   94 (136)
                      ...+.|+-+.++++.++| +...|+..+.++...| .+++++.+++..- ..+++..+++..+.++..+ + +++++++.
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            445789999999999999 7888999999999999 4999999886653 3678999999999999999 7 88887765


Q ss_pred             hhhhhcccchHhHHHHHHHHHHHHcCChH--------HHHHHHHHhhc
Q 032655           95 SVMLRLLKMISSAICFLRGKAYEALGNCA--------QARLWLVSCDE  134 (136)
Q Consensus        95 ~~~~~~~~~~~a~i~~l~G~~~~~~~~~~--------~A~~~y~~AL~  134 (136)
                      ....+...|..-.++..+|-+...+|..+        ++++++.++++
T Consensus       148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~  195 (349)
T 3q7a_A          148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR  195 (349)
T ss_dssp             HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence            55444444556778899999999999888        99999998875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.99  E-value=8.4e-05  Score=67.34  Aligned_cols=119  Identities=12%  Similarity=-0.029  Sum_probs=73.8

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      +-......|++++|+-..+|+    .++++++..|.++...|+|++|+.++..+.-..+.+..-.-.|.||.+++++++.
T Consensus      1111 LAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A         1111 LAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH
Confidence            334566678888888887774    5777788888888888888888887744321112222222366666776666654


Q ss_pred             hhhhh------h-----h-hc-cc-------chHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           92 CRCSV------M-----L-RL-LK-------MISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        92 ~~~~~------~-----~-~~-~~-------~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .+...      .     . .+ +.       -..++-+..+|.+|.++|++++|+++|++|..
T Consensus      1187 e~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1187 EEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            32100      0     0 00 00       01234555779999999999999999988753

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.99  E-value=6.1e-05  Score=58.11  Aligned_cols=68  Identities=12%  Similarity=0.020  Sum_probs=44.0

Q ss_pred             HHHHHHHHhccC-CChHHHHHHHHHHhccCChHHHHHHHhcC-cccc--cCcchHHHHHHHHHHccChhhhh
Q 032655           25 AIFFANEVAALT-NDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVL--RDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        25 Alf~aekl~~~~-~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~--~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      |+-..+++++.. +++..++.+|+++...|++++|+..+.+. ...+  .+++++.+.++++.++|+.+.|.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~  156 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS  156 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence            666666666654 35555667777777777777777776554 2222  46677777777777777777763

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.97  E-value=4.8e-05  Score=60.05  Aligned_cols=115  Identities=12%  Similarity=-0.073  Sum_probs=83.0

Q ss_pred             CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCCh-----------HHHHHHHhcCcccccCcchHHHHHHHHHHccC
Q 032655           20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHY-----------RRPFHLLNSSKIVLRDLRFRYLAAKCLEELRS   87 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~-----------~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~   87 (136)
                      .....|+-+.+++++++| .+..+-.++.|+.....+           .+++.......+.+..+.++-.+|..++-.|+
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd  292 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK  292 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence            345789999999999999 566777777777532111           12333222334456777888888888888899


Q ss_pred             hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +++|.......+.-.| ....+.++|+++.-.|+.++|++.|.+|+.+
T Consensus       293 ~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999886654333223 3455678899999999999999999999864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.89  E-value=0.00014  Score=65.85  Aligned_cols=93  Identities=11%  Similarity=-0.049  Sum_probs=68.4

Q ss_pred             CCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhc---------------
Q 032655           36 TNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL---------------  100 (136)
Q Consensus        36 ~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~---------------  100 (136)
                      .|+..+++..|.+++..|+|..|..+.++.       .-+.-+|.|+.++|+|++|++...+..+               
T Consensus      1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A         1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence            346778888888888888888888888774       3667788888888888888764321100               


Q ss_pred             ----------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          101 ----------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       101 ----------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                                .+...+.-+.-++..|++.|.+++|+..|+.+|.+
T Consensus      1265 Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1265 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             HHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence                      11123333446789999999999999999999864

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.81  E-value=9e-05  Score=57.14  Aligned_cols=118  Identities=9%  Similarity=-0.087  Sum_probs=82.2

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC---ChHHHHHHHHHHhccCChHHHHHHHhcCccccc-----CcchHHHHHHH--HH
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN---DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLR-----DLRFRYLAAKC--LE   83 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~---~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~-----~~~~~~l~a~c--~~   83 (136)
                      .-+...|++++|+.|..+.+...|   +.+.+...++++...|+++.|.+.+++..-...     .-..+..++.+  .+
T Consensus       108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l  187 (310)
T 3mv2_B          108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF  187 (310)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHH
Confidence            334456999999999999988875   566788999999999999999999977532111     11334444444  55


Q ss_pred             Hcc--ChhhhhhhhhhhhcccchHh--HHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           84 ELR--SGTSVCRCSVMLRLLKMISS--AICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        84 ~l~--~~~ea~~~~~~~~~~~~~~a--~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ..|  ++++|......-.+  ....  +...+.+ ++..+|++++|...++..++
T Consensus       188 ~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          188 ATNKETATSNFYYYEELSQ--TFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHS
T ss_pred             HhCCccHHHHHHHHHHHHH--hCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHH
Confidence            556  78887654443222  3321  3455666 99999999999999986654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.80  E-value=4.8e-05  Score=48.70  Aligned_cols=58  Identities=3%  Similarity=0.011  Sum_probs=30.7

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCcc-c-------ccCcchHHHHHHHHHHccChhhhhhhh
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI-V-------LRDLRFRYLAAKCLEELRSGTSVCRCS   95 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~-------~~~~~~~~l~a~c~~~l~~~~ea~~~~   95 (136)
                      +++|.+.+|..++..|+|.+|+.-++.+.- .       .....+.+.+|.|++++|++++|....
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~   69 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT   69 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            455666666666666666666554433211 0       123345556666666666666665543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.65  E-value=0.00019  Score=45.44  Aligned_cols=60  Identities=12%  Similarity=-0.058  Sum_probs=48.9

Q ss_pred             ChHHHHHHHHHHhccCC---hHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655           38 DPADVYMQAQALFLGRH---YRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~---~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~   97 (136)
                      +|+.++.+|++++..++   ..+|..++++. .+++.++..++++|..+++.|+|++|++....
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~   68 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL   68 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            78889999999976665   68888888665 45788899999999999999999999875544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.54  E-value=0.0012  Score=52.60  Aligned_cols=112  Identities=3%  Similarity=-0.113  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccC-----C-ChH---HHHHHHHHHhccCChHHHHHHHhcCc------ccccCc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALT-----N-DPA---DVYMQAQALFLGRHYRRPFHLLNSSK------IVLRDL   72 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~-----~-~~~---~~~~la~~l~~~g~~~~A~~~l~~~~------l~~~~~   72 (136)
                      .+-..+..+-.++.|++|+-..+++++..     | +|.   ....+|.+|...|+|++|+.+.++..      +-+.||
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP  368 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence            33444566778899999999999999875     2 332   47779999999999999999886532      112344


Q ss_pred             ---chHHHHHHHHHHccChhhhhhhhhhh-------hc-ccchHhHHHHHHHHHHHHc
Q 032655           73 ---RFRYLAAKCLEELRSGTSVCRCSVML-------RL-LKMISSAICFLRGKAYEAL  119 (136)
Q Consensus        73 ---~~~~l~a~c~~~l~~~~ea~~~~~~~-------~~-~~~~~a~i~~l~G~~~~~~  119 (136)
                         ...+.+|..+..+|+|+||+......       +. +.|.-+.+.-+++.+...+
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence               56889999999999999998643321       11 3455666666777776544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.49  E-value=0.0002  Score=45.72  Aligned_cols=71  Identities=7%  Similarity=-0.027  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC--------ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN--------DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAA   79 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~--------~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a   79 (136)
                      +-.+-..+..+++|..|+.|.++++...+        .++-...+|.|++..|++.+|+.++++.. +.|.+.......+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            34566788899999999999999997641        23346789999999999999999887653 4666666655444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.35  E-value=0.00075  Score=46.89  Aligned_cols=60  Identities=12%  Similarity=0.034  Sum_probs=49.2

Q ss_pred             CChHHHHHHHHHHhccC---ChHHHHHHHhcCc-cc-c-cCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           37 NDPADVYMQAQALFLGR---HYRRPFHLLNSSK-IV-L-RDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        37 ~~~~~~~~la~~l~~~g---~~~~A~~~l~~~~-l~-~-~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      ++++..|.+|+||..++   +.++++.+|+..- .. + .+.+|.|.+|..++++|+|++|.....
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            38899999999999999   5669998886532 22 3 567999999999999999999987544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.29  E-value=0.00091  Score=42.22  Aligned_cols=67  Identities=13%  Similarity=-0.204  Sum_probs=52.0

Q ss_pred             ccCcchHHHHHHHHHHccC---hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           69 LRDLRFRYLAAKCLEELRS---GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        69 ~~~~~~~~l~a~c~~~l~~---~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.++..++.+|.+++-.+.   .++|.......+...|......+++|.++...|++++|+..|+++|+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5778899999999987666   567766554433333445566688999999999999999999999864

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.26  E-value=0.0031  Score=42.42  Aligned_cols=60  Identities=12%  Similarity=-0.017  Sum_probs=48.9

Q ss_pred             CChHHHHHHHHHHhccCChHH---HHHHHhcC-ccc-c-cCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           37 NDPADVYMQAQALFLGRHYRR---PFHLLNSS-KIV-L-RDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        37 ~~~~~~~~la~~l~~~g~~~~---A~~~l~~~-~l~-~-~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      |+++..|.+|+|+..+++...   ++.+|+.. ... + ..-+|.|.+|..++++|+|++|.....
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~   98 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   98 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            489999999999999999776   88888652 212 2 455899999999999999999987544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.21  E-value=0.002  Score=51.57  Aligned_cols=78  Identities=5%  Similarity=-0.051  Sum_probs=61.0

Q ss_pred             HcCChhhHHHHHHHHhccC-----C-ChH---HHHHHHHHHhccCChHHHHHHHhcCcc------cccCc---chHHHHH
Q 032655           18 SKHLYSSAIFFANEVAALT-----N-DPA---DVYMQAQALFLGRHYRRPFHLLNSSKI------VLRDL---RFRYLAA   79 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~-----~-~~~---~~~~la~~l~~~g~~~~A~~~l~~~~l------~~~~~---~~~~l~a   79 (136)
                      ..|+|++|+-..++++++.     | +|.   ....+|.+|...|+|++|..+.++..-      -+.||   ...+.+|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            3578999999999999864     3 333   477899999999999999998866321      12344   5688999


Q ss_pred             HHHHHccChhhhhhhh
Q 032655           80 KCLEELRSGTSVCRCS   95 (136)
Q Consensus        80 ~c~~~l~~~~ea~~~~   95 (136)
                      ..+..+|+|+||+.-.
T Consensus       390 ~~~~~qg~~~eA~~~~  405 (433)
T 3qww_A          390 RLYMGLENKAAGEKAL  405 (433)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHH
Confidence            9999999999997643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.97  E-value=0.0027  Score=42.22  Aligned_cols=77  Identities=6%  Similarity=-0.026  Sum_probs=64.5

Q ss_pred             cCChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhh
Q 032655           19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTS   90 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~e   90 (136)
                      ...++.|+.|.+++... ++++..+.+|.+|..    .+++.+|+..++++- ...++.+.+.+|.++..    .+++++
T Consensus        38 g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~~~a~~~Lg~~y~~G~g~~~d~~~  115 (138)
T 1klx_A           38 QINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCLILGYKQYAGKGVVKNEKQ  115 (138)
T ss_dssp             TSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence            34567799999999876 688999999999998    899999999997753 23678899999999999    899999


Q ss_pred             hhhhhhh
Q 032655           91 VCRCSVM   97 (136)
Q Consensus        91 a~~~~~~   97 (136)
                      |......
T Consensus       116 A~~~~~~  122 (138)
T 1klx_A          116 AVKTFEK  122 (138)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9765443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.003  Score=53.96  Aligned_cols=58  Identities=17%  Similarity=0.125  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      -|...++.++.+++|+-|+-.|.+++...| +-..|+.|+.||...|+|+.|+-.|.+.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            467778899999999999999999999999 7899999999999999999999988775

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.53  E-value=0.002  Score=44.92  Aligned_cols=51  Identities=10%  Similarity=0.040  Sum_probs=42.5

Q ss_pred             ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC-----------ChHHHHHHHhcCc-ccccC
Q 032655           21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLGR-----------HYRRPFHLLNSSK-IVLRD   71 (136)
Q Consensus        21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g-----------~~~~A~~~l~~~~-l~~~~   71 (136)
                      .+++|+-..++++.++| .++.++.+|.+|+..|           +|++|+..++++- +.+.+
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            37799999999999999 7889999999999875           8999999887653 34443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.48  E-value=0.01  Score=40.23  Aligned_cols=60  Identities=12%  Similarity=-0.045  Sum_probs=47.5

Q ss_pred             CChHHHHHHHHHHhccCChH---HHHHHHhcCc-ccc-cCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           37 NDPADVYMQAQALFLGRHYR---RPFHLLNSSK-IVL-RDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        37 ~~~~~~~~la~~l~~~g~~~---~A~~~l~~~~-l~~-~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      |+++..|.+|+|+..+.+..   +++.+|+..- ..+ ..-+|.|.+|..++++|+|++|....+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d  102 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD  102 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            58999999999999998863   6788775532 122 346899999999999999999976544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.47  E-value=0.0061  Score=42.25  Aligned_cols=67  Identities=10%  Similarity=-0.093  Sum_probs=52.0

Q ss_pred             ccCcchHHHHHHHHHHcc---Chhhhhhhhhhhhccc-c-hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           69 LRDLRFRYLAAKCLEELR---SGTSVCRCSVMLRLLK-M-ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        69 ~~~~~~~~l~a~c~~~l~---~~~ea~~~~~~~~~~~-~-~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +.+..+.+-+|.|+.+.+   +.++++.-....+... | .....+|++|..|-++|++++|..++.++|++
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            367899999999999998   5557765443322222 3 35667889999999999999999999999874

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.34  E-value=0.028  Score=38.53  Aligned_cols=61  Identities=13%  Similarity=-0.027  Sum_probs=48.2

Q ss_pred             CCChHHHHHHHHHHhccCChH---HHHHHHhcCcc-cc-cCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           36 TNDPADVYMQAQALFLGRHYR---RPFHLLNSSKI-VL-RDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        36 ~~~~~~~~~la~~l~~~g~~~---~A~~~l~~~~l-~~-~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      .|+++..|.+|+|+..+.+..   +++.+|+..-- .+ ..-+|.|.+|..++++|+|++|....+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d  101 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD  101 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            479999999999999999865   67777765321 11 345899999999999999999976443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.76  E-value=0.15  Score=41.18  Aligned_cols=86  Identities=12%  Similarity=0.005  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccC--CChHHHHHHHHHHhccC---------ChHHHHHHHhcCcc--cccCcch
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALT--NDPADVYMQAQALFLGR---------HYRRPFHLLNSSKI--VLRDLRF   74 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~--~~~~~~~~la~~l~~~g---------~~~~A~~~l~~~~l--~~~~~~~   74 (136)
                      .++..|..|-..|+++.|+-+.+......  |+.-..-.+-.++...|         ...+|..+++.-..  ...+...
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            46778888888999999999998877543  45444333333443333         35667766644211  2235556


Q ss_pred             HHHHHHHHHHccChhhhhh
Q 032655           75 RYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        75 ~~l~a~c~~~l~~~~ea~~   93 (136)
                      +..+-.+|.+.|++++|.+
T Consensus       108 yn~lI~~~~~~g~~~~A~~  126 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFD  126 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHH
Confidence            6677777777888887753

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.52  E-value=0.15  Score=43.03  Aligned_cols=113  Identities=7%  Similarity=-0.043  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHH-HHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhh
Q 032655           23 SSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPF-HLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR   99 (136)
Q Consensus        23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~-~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~   99 (136)
                      +-..+..++++..+| .++-|+.+|+-+-..|+..+|. .+++++-. .+.+...+..++......|++++|-+.....+
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            345788999999999 8888999999999999998997 88866532 44555667779999999999998865332211


Q ss_pred             c-----------ccc-----------hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          100 L-----------LKM-----------ISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       100 ~-----------~~~-----------~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +           +.|           ..+.++........+.|+.+.|...|.+|++.
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            1           112           13346667778888888999999999988753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.48  E-value=0.065  Score=41.90  Aligned_cols=61  Identities=7%  Similarity=-0.067  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS   64 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~   64 (136)
                      ..+.-+..++...+..+.++.|+-+++++++..| +.+-+..+..+|+..|+..+|+...+.
T Consensus       169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~  230 (388)
T 2ff4_A          169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  230 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3444556677888899999999999999999999 666788899999999999999987765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.40  E-value=0.12  Score=41.83  Aligned_cols=111  Identities=11%  Similarity=-0.065  Sum_probs=77.3

Q ss_pred             hhhHHHHHHHHhcc--CCChHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHHccChhhhhhhhh-
Q 032655           22 YSSAIFFANEVAAL--TNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEELRSGTSVCRCSV-   96 (136)
Q Consensus        22 ~~~Alf~aekl~~~--~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~l~~~~ea~~~~~-   96 (136)
                      .+.|.-..+.....  .|+....-.+..++...|++++|..+++.-..  ...+...+..+-.+|.+.|+.++|.+... 
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            46677677766543  35666777788889999999999998865321  23455667777788889999999987543 


Q ss_pred             hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           97 MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        97 ~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      +...++.+....+..+=..|.+.|+.++|.+.|.+-
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            222344334445555556778899999999888763

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.25  E-value=0.05  Score=42.82  Aligned_cols=63  Identities=10%  Similarity=-0.019  Sum_probs=42.0

Q ss_pred             ccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           34 ALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        34 ~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      ...| ++....-+|..+...|++++|+..++++-....+...+.+.|.++.-.|++++|++...
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~  334 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYL  334 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3344 44555556667777788888888886654323344555678888888888888876543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.86  E-value=0.46  Score=33.25  Aligned_cols=75  Identities=12%  Similarity=0.036  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccC------CC--------------------hHHHHHHHHHHhccCChHHHHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALT------ND--------------------PADVYMQAQALFLGRHYRRPFHL   61 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~------~~--------------------~~~~~~la~~l~~~g~~~~A~~~   61 (136)
                      -+--+.+-...+++|..|.-..++++.+.      |+                    .|--|..|.|+...|+++.|+..
T Consensus        65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~  144 (167)
T 3ffl_A           65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI  144 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence            34445556677889999998888865442      11                    14579999999999999999999


Q ss_pred             HhcCcccccCcchHHHHHHHH
Q 032655           62 LNSSKIVLRDLRFRYLAAKCL   82 (136)
Q Consensus        62 l~~~~l~~~~~~~~~l~a~c~   82 (136)
                      |+......+.+....++|+-|
T Consensus       145 Le~Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          145 LDGIPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHTSCGGGCCHHHHHHHHHHC
T ss_pred             HhcCCchhcCHHHHHHHHHHh
Confidence            999876668888888888754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.75  E-value=1.4  Score=36.14  Aligned_cols=109  Identities=12%  Similarity=-0.013  Sum_probs=65.9

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChh
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      ...++.....+.++.|+-++       .++..-+.++   ...|+++.|+++.+..    .++..+-.+|+.+.+.++++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~-------~~~~~~f~~~---l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~  698 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNIS-------PDQDQKFELA---LKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFK  698 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHC-------CCHHHHHHHH---HHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCChHHheecC-------CCcchheehh---hhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHH
Confidence            44555555556666655433       2444444444   4569999999988764    45678889999999999999


Q ss_pred             hhhhhhhhh--------h---cccc----------hHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           90 SVCRCSVML--------R---LLKM----------ISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        90 ea~~~~~~~--------~---~~~~----------~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      .|+......        +   .+.+          .....+..-..+|..+|++++|++.|++.
T Consensus       699 ~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          699 LAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence            987543210        0   0000          01111122355677788888888888765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=93.16  E-value=0.69  Score=38.91  Aligned_cols=76  Identities=7%  Similarity=-0.095  Sum_probs=54.0

Q ss_pred             HHHcCChhhHH-HHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCccc------------c-----------c
Q 032655           16 CVSKHLYSSAI-FFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIV------------L-----------R   70 (136)
Q Consensus        16 ~l~~~~~~~Al-f~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~------------~-----------~   70 (136)
                      ...++..++|. -..++++..+| ++.-++.++...-..|++++|-.++++.-..            +           .
T Consensus       353 ~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~  432 (679)
T 4e6h_A          353 QGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK  432 (679)
T ss_dssp             HHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence            44567778887 88899998888 5445677899999999999998887664311            1           0


Q ss_pred             CcchHHHHHHHHHHccChhhh
Q 032655           71 DLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        71 ~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      ....+..+++.....|..+.|
T Consensus       433 ~~~vWi~y~~~erR~~~l~~A  453 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAAS  453 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHH
Confidence            123466677777777777665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.02  E-value=0.12  Score=39.47  Aligned_cols=76  Identities=8%  Similarity=-0.064  Sum_probs=60.7

Q ss_pred             hhhHHHHHHHHhccCCCh---HHHHHHHHHHhcc-----CChHHHHHHHhcCc-cccc-CcchHHHHHHHHHHc-cChhh
Q 032655           22 YSSAIFFANEVAALTNDP---ADVYMQAQALFLG-----RHYRRPFHLLNSSK-IVLR-DLRFRYLAAKCLEEL-RSGTS   90 (136)
Q Consensus        22 ~~~Alf~aekl~~~~~~~---~~~~~la~~l~~~-----g~~~~A~~~l~~~~-l~~~-~~~~~~l~a~c~~~l-~~~~e   90 (136)
                      .+.|.-..+|+++++|+.   .....+|..|+..     |+.++|..+++++. +.+. ++...+.+|.-+... |++++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            457788889999999963   3577889888884     99999999997764 4554 499999999999884 99999


Q ss_pred             hhhhhhh
Q 032655           91 VCRCSVM   97 (136)
Q Consensus        91 a~~~~~~   97 (136)
                      +......
T Consensus       259 a~~~L~k  265 (301)
T 3u64_A          259 FDEALDR  265 (301)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8765543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.96  E-value=1.2  Score=38.84  Aligned_cols=94  Identities=18%  Similarity=0.115  Sum_probs=65.7

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhh----------------h---
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM----------------L---   98 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~----------------~---   98 (136)
                      .+.....+...+...|+++-|.+++.=.   +.++...|++|+|++++|++++|.+...+                .   
T Consensus       809 ~~~~~~~l~~~L~~~~~~~~a~eL~~~~---~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~  885 (950)
T 4gq2_M          809 ENDLVTELVEKLFLFKQYNACMQLIGWL---NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE  885 (950)
T ss_dssp             SCCHHHHHHHHHHHTTCHHHHHHHGGGC---CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHH
T ss_pred             CCccHHHHHHHHHHhcHHHHHHHHHhhc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhh
Confidence            3444445666667788888877766543   46677789999999999999999753211                0   


Q ss_pred             -hc--c-cchHhHHHHH-HHHHHHHcCChHHHHHHHHHhhcc
Q 032655           99 -RL--L-KMISSAICFL-RGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        99 -~~--~-~~~~a~i~~l-~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                       ++  + ....+. ||+ .-.+++..+-++-++++-+.||..
T Consensus       886 ll~~~e~~~~~~~-YY~hV~~LFE~~~a~~~vi~fA~lAI~~  926 (950)
T 4gq2_M          886 IAEKYHHQNLLSC-YYLHLSKKLFEESAYIDALEFSLLADAS  926 (950)
T ss_dssp             HHHHTTTCSHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ccCcccccchhHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence             11  1 112222 554 499999999999999999999864

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.52  E-value=0.2  Score=33.44  Aligned_cols=53  Identities=11%  Similarity=0.140  Sum_probs=37.0

Q ss_pred             HHHHHHHHhccC-C--ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHH
Q 032655           25 AIFFANEVAALT-N--DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYL   77 (136)
Q Consensus        25 Alf~aekl~~~~-~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l   77 (136)
                      ++..-+.++... |  ..+-+|++|..+|+.|+|.+|..+++...- .|.+..+.-|
T Consensus        57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            666666666655 4  334599999999999999999998877431 3344444433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.42  E-value=2  Score=30.19  Aligned_cols=52  Identities=10%  Similarity=-0.086  Sum_probs=39.0

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK   66 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~   66 (136)
                      ....-+++.|+++.|.-.|+.+    .++.-|-.+|..-...|+++-|..++++.+
T Consensus        10 ~rF~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           10 IRFDLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            3456677889999998888776    456678888888888888887777776643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.15  E-value=1.8  Score=35.47  Aligned_cols=49  Identities=4%  Similarity=-0.038  Sum_probs=38.9

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS   65 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~   65 (136)
                      ...++..++++.|.-.+..+    +++..|-.+|......|+++.|..++.+.
T Consensus       659 f~~~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            45567889999998876432    46778889999999999999998888764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.81  E-value=0.51  Score=38.70  Aligned_cols=120  Identities=8%  Similarity=-0.042  Sum_probs=51.9

Q ss_pred             HHHHcCChhhHHHHHHHHhc---cC--------C-ChHHHHHHHHHHhccCChHHH--------------HHHHhcCcc-
Q 032655           15 DCVSKHLYSSAIFFANEVAA---LT--------N-DPADVYMQAQALFLGRHYRRP--------------FHLLNSSKI-   67 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~---~~--------~-~~~~~~~la~~l~~~g~~~~A--------------~~~l~~~~l-   67 (136)
                      +-+++.+|+.|..+++.+..   +.        + +..-||+++.++-+.|.....              +..++.+.+ 
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            45678899999999987762   11        1 233477777777777765431              123344433 


Q ss_pred             --cccCcchHHHHHHHHHHccChhhhhhhhhhh-hc----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           68 --VLRDLRFRYLAAKCLEELRSGTSVCRCSVML-RL----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        68 --~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~-~~----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                        ...-....+++-+.|...+.|++|..-..+. +.    .++.-..-+|..|+++.-++++.+|.+++..|++
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r  298 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR  298 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence              1123357889999999999999997643321 11    1223344566889999999999999999999986

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.68  E-value=0.81  Score=36.36  Aligned_cols=93  Identities=6%  Similarity=-0.152  Sum_probs=69.2

Q ss_pred             HHHHHHHHhccCChHHHHHHHhcCcc-----cc--cCcchHHHHHHHHHHccChhhhhhhhhh----hhc--ccc-hHhH
Q 032655           42 VYMQAQALFLGRHYRRPFHLLNSSKI-----VL--RDLRFRYLAAKCLEELRSGTSVCRCSVM----LRL--LKM-ISSA  107 (136)
Q Consensus        42 ~~~la~~l~~~g~~~~A~~~l~~~~l-----~~--~~~~~~~l~a~c~~~l~~~~ea~~~~~~----~~~--~~~-~~a~  107 (136)
                      ...||..+...|+|.+|..++.....     ..  .-.++.....+.|.+.++|..|...+..    .++  ..| ....
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            46789999999999999998876322     11  1236788899999999999998643322    222  222 3445


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655          108 ICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       108 i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      .+...|+++..-+++.+|..+|.++++
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            556889999999999999999998864

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.63  E-value=0.39  Score=32.83  Aligned_cols=54  Identities=4%  Similarity=-0.029  Sum_probs=38.6

Q ss_pred             hhHHHHHHHHhccCC-C-hHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHH
Q 032655           23 SSAIFFANEVAALTN-D-PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRY   76 (136)
Q Consensus        23 ~~Alf~aekl~~~~~-~-~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~   76 (136)
                      ..++...+.++..+| . .+-+|++|..+|+.|+|.+|..+++...- .|.+..+.-
T Consensus        59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            356667777777667 3 44699999999999999999998877431 334444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=90.60  E-value=2.6  Score=29.08  Aligned_cols=117  Identities=12%  Similarity=0.068  Sum_probs=66.5

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHH--HHHHHHHccChhhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYL--AAKCLEELRSGTSV   91 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l--~a~c~~~l~~~~ea   91 (136)
                      ..+..|..+..+-.-++...-+| +.-+|+.=-  ....-+.+-..+.|++.+-...-..|-++  .-.|+.+.+.+.|-
T Consensus        16 ~~ildG~v~qGveii~k~~~ssni~E~NW~ICN--iiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~   93 (172)
T 1wy6_A           16 KFLLDGYIDEGVKIVLEITKSSTKSEYNWFICN--LLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH   93 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHH--HHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred             HHHHhhhHHHHHHHHHHHcCCCCccccceeeee--cchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHH
Confidence            34555888999888888887777 433444321  12222333334444443221111122222  23466666666663


Q ss_pred             ----hhhhh------------hh-hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655           92 ----CRCSV------------ML-RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD  133 (136)
Q Consensus        92 ----~~~~~------------~~-~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL  133 (136)
                          ++...            .. +...++.+++.+-+|.+|.+.|+..+|-+-.++|=
T Consensus        94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC  152 (172)
T 1wy6_A           94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC  152 (172)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence                22211            01 11334567888888999999999999999988874

>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B

Probab=90.16  E-value=2.9  Score=33.02  Aligned_cols=109  Identities=10%  Similarity=0.110  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCCChHHH-HHHHHHHhcc----CChHHHHHHHhcCcccccCcchHHHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADV-YMQAQALFLG----RHYRRPFHLLNSSKIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~-~~la~~l~~~----g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~   83 (136)
                      +...|+.|++.++|.+|+..|     ..++++-+ -.--+.|+..    ..+-+.+..+-...+    .++.     +..
T Consensus       159 ~e~AV~~cl~~~r~adAllLA-----~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~----~d~V-----~~~  224 (399)
T 2pm7_A          159 IKSAVKNSLENDLMMEAMVIA-----LDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREV----DDLV-----ENL  224 (399)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCC----HHHH-----HHB
T ss_pred             HHHHHHHHHHCCChHHHHHHH-----HhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCH----HHHH-----hcC
Confidence            455667777777777776554     45565555 3333334422    234455554433222    0110     112


Q ss_pred             HccChhhhhhhhhhhhcccc--hHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           84 ELRSGTSVCRCSVMLRLLKM--ISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      .+++|+|++...--+- ..+  ....+|-.+|.-++..|+++.|.-||.-|
T Consensus       225 ~l~~WkE~La~i~t~a-~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~A  274 (399)
T 2pm7_A          225 DVSQWKFISKAIQNLY-PNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAA  274 (399)
T ss_dssp             CGGGHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHhcC-CccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhh
Confidence            5667777654222111 122  45667778888888888999998888765

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.89  E-value=0.32  Score=32.89  Aligned_cols=56  Identities=5%  Similarity=-0.017  Sum_probs=40.0

Q ss_pred             hhhHHHHHHHHhccCC-C-hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHH
Q 032655           22 YSSAIFFANEVAALTN-D-PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYL   77 (136)
Q Consensus        22 ~~~Alf~aekl~~~~~-~-~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l   77 (136)
                      ...++..-+.++..+| . .+-+|++|..+|+.|+|.+|..+++... ..|.+..+.-|
T Consensus        59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            3467777777777777 3 4469999999999999999999887643 13344444333

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.49  E-value=1.2  Score=35.17  Aligned_cols=91  Identities=11%  Similarity=-0.043  Sum_probs=64.9

Q ss_pred             HHHHHHhccCChHHHHHHHhcCcc-----c--ccCcchHHHHHHHHHHccChhhhhhhhhh---hhc----ccchHhHHH
Q 032655           44 MQAQALFLGRHYRRPFHLLNSSKI-----V--LRDLRFRYLAAKCLEELRSGTSVCRCSVM---LRL----LKMISSAIC  109 (136)
Q Consensus        44 ~la~~l~~~g~~~~A~~~l~~~~l-----~--~~~~~~~~l~a~c~~~l~~~~ea~~~~~~---~~~----~~~~~a~i~  109 (136)
                      .+|..|+..|+|.+|+.++++..-     +  ..-.++..+-.+.+..+|++..+-.....   ..+    +....+.+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            478999999999999888765321     1  12335677778888899998887542211   111    222466666


Q ss_pred             HHHHHHHH-HcCChHHHHHHHHHhhc
Q 032655          110 FLRGKAYE-ALGNCAQARLWLVSCDE  134 (136)
Q Consensus       110 ~l~G~~~~-~~~~~~~A~~~y~~AL~  134 (136)
                      ..-|..+. ..++++.|...|-+|++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            67799999 89999999999988863

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.84  E-value=2.4  Score=37.53  Aligned_cols=92  Identities=17%  Similarity=0.104  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhh-------------------hc-
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVML-------------------RL-  100 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~-------------------~~-  100 (136)
                      -...+...+...|++.-+..++.=   .+.++...|+.|+|++..|++++|.+.....                   +. 
T Consensus       814 ~~~~l~~~l~~~~~~~~~~~l~~~---~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          814 LVTELVEKLFLFKQYNACMQLIGW---LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHHHHSCTTHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHhhh---ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence            345667778888888877776543   2456777899999999999999986532110                   00 


Q ss_pred             --ccchHhHHHHHH-HHHHHHcCChHHHHHHHHHhhcc
Q 032655          101 --LKMISSAICFLR-GKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       101 --~~~~~a~i~~l~-G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                        .....-+-+|+. -.++++.+.++-++++-+.|++.
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~  928 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS  928 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              001112234544 67888889999998888888753

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=88.33  E-value=0.75  Score=35.11  Aligned_cols=48  Identities=15%  Similarity=0.016  Sum_probs=42.9

Q ss_pred             CChhhHHHHHHHHhccCC--ChHHHHHHHHHHhcc-CChHHHHHHHhcCcc
Q 032655           20 HLYSSAIFFANEVAALTN--DPADVYMQAQALFLG-RHYRRPFHLLNSSKI   67 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~-g~~~~A~~~l~~~~l   67 (136)
                      |+.+.|....+|+++++|  +++..+.+|.-+... |++..|..+|++..-
T Consensus       218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~  268 (301)
T 3u64_A          218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA  268 (301)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence            899999999999999999  388999999999885 999999999977543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=86.00  E-value=5.2  Score=25.85  Aligned_cols=88  Identities=16%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHH-HHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHH
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVY-MQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKC   81 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~-~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c   81 (136)
                      .++...|-++.--.--+|..++|.-.||=+-.... .+-|- .-...+...|+|.+|+.+.+..-    .|+.--++|.|
T Consensus         3 ~~l~~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc   77 (115)
T 2uwj_G            3 TSLIRELAELALAGSGQHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC   77 (115)
T ss_dssp             CHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH
Confidence            34555666666666678999999999997766544 44333 33678999999999999887743    67777789999


Q ss_pred             HHHccChhhhhhhh
Q 032655           82 LEELRSGTSVCRCS   95 (136)
Q Consensus        82 ~~~l~~~~ea~~~~   95 (136)
                      -.++|-..+++...
T Consensus        78 e~rlGl~s~le~rL   91 (115)
T 2uwj_G           78 EWHLGLGAALDRRL   91 (115)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHhcccHHHHHHHH
Confidence            99999999987654

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=85.79  E-value=5.4  Score=25.82  Aligned_cols=87  Identities=14%  Similarity=0.025  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHH-HHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHH
Q 032655            4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVY-MQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCL   82 (136)
Q Consensus         4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~-~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~   82 (136)
                      ++...|-++.--.--+|..++|.-.||=+-.... .+-|- .-...+...|+|.+|+.+.+..-    .|+.--++|.|-
T Consensus         5 ~l~~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce   79 (116)
T 2p58_C            5 KLNVLLAEIALIGTGNHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE   79 (116)
T ss_dssp             CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH
Confidence            3444555555556678999999999997766544 44333 33678999999999999998753    677777899999


Q ss_pred             HHccChhhhhhhh
Q 032655           83 EELRSGTSVCRCS   95 (136)
Q Consensus        83 ~~l~~~~ea~~~~   95 (136)
                      .++|-..+++...
T Consensus        80 ~rlGl~s~le~rL   92 (116)
T 2p58_C           80 YRLGLGSALESRL   92 (116)
T ss_dssp             HHHTCHHHHHHHH
T ss_pred             HhcccHHHHHHHH
Confidence            9999999987654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.79  E-value=11  Score=33.45  Aligned_cols=115  Identities=19%  Similarity=0.179  Sum_probs=71.1

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-ccc------------------
Q 032655           11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLR------------------   70 (136)
Q Consensus        11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~------------------   70 (136)
                      .++..++..++++-|.    .+....| +|-..|.+|.|+...|++++|..+++++.. ...                  
T Consensus       817 ~l~~~l~~~~~~~~~~----~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHH----HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHH----HHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            4556667777776543    3555666 777889999999999999999999977532 100                  


Q ss_pred             ----CcchHHHHHHHHH-HccChhhhhhhhhhhh--c--c-cchHhHHHHHHHHHHHHcCChHHHHHHH
Q 032655           71 ----DLRFRYLAAKCLE-ELRSGTSVCRCSVMLR--L--L-KMISSAICFLRGKAYEALGNCAQARLWL  129 (136)
Q Consensus        71 ----~~~~~~l~a~c~~-~l~~~~ea~~~~~~~~--~--~-~~~~a~i~~l~G~~~~~~~~~~~A~~~y  129 (136)
                          ....+|+..-.++ +.|-++.+++-....+  .  + .+....++..+=+.+-.+|++++|-...
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL  961 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL  961 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence                0112444444444 4455555554222111  1  1 1223446666677788899999987665

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=85.52  E-value=4.4  Score=29.02  Aligned_cols=71  Identities=18%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             cCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc--ccc----------------Cc-chHHHHH
Q 032655           19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLR----------------DL-RFRYLAA   79 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~----------------~~-~~~~l~a   79 (136)
                      +|-|..|+|.--++    ....++|+.+.||....+|+.|+..+++.--  ...                +. -+..++|
T Consensus        46 ngEY~R~Lf~L~~l----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a  121 (242)
T 3kae_A           46 NGEYTRALFHLHKL----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG  121 (242)
T ss_dssp             TTCHHHHHHHHHTC----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred             cchHhHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence            47777787753322    2456899999999999999999998876321  111                11 2567899


Q ss_pred             HHHHHccChhhhhh
Q 032655           80 KCLEELRSGTSVCR   93 (136)
Q Consensus        80 ~c~~~l~~~~ea~~   93 (136)
                      ..|..+|.-+||+.
T Consensus       122 ~lltq~g~r~EaI~  135 (242)
T 3kae_A          122 DLCTLSGYREEGIG  135 (242)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHhcCHHHhhh
Confidence            99999999999974

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.51  E-value=1.5  Score=34.59  Aligned_cols=94  Identities=11%  Similarity=-0.179  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhcCcc----cccCcchHHHHHHHHHHccChhhhhhhhhhh---hc--ccc-hHhHHHH
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNSSKI----VLRDLRFRYLAAKCLEELRSGTSVCRCSVML---RL--LKM-ISSAICF  110 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~~~l----~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~---~~--~~~-~~a~i~~  110 (136)
                      ....+|.-++..|++..|.+.+.+..-    ...-..+.....++++..++|..+.......   .+  +.+ ....+-.
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            466799999999999999998866331    1234467788888999999999986543221   11  122 2333444


Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhc
Q 032655          111 LRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       111 l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ..|.++...+++..|...|.+++.
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence            669999999999999999988753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=84.94  E-value=5  Score=31.04  Aligned_cols=60  Identities=10%  Similarity=-0.153  Sum_probs=35.4

Q ss_pred             chHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655           73 RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC  132 (136)
Q Consensus        73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A  132 (136)
                      .+..-.+..+..+|++.+++......+...|....++..+=.++.+.|++.+|...|.++
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555666677777777765443322223333445555556667777777777777664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=84.26  E-value=7.6  Score=33.19  Aligned_cols=110  Identities=11%  Similarity=-0.058  Sum_probs=67.8

Q ss_pred             hhhHHHHHHHHhccCCChHHHHHHHHH--Hh-ccCChHHHHHHHhcCc---------c----------cccCcchHHHHH
Q 032655           22 YSSAIFFANEVAALTNDPADVYMQAQA--LF-LGRHYRRPFHLLNSSK---------I----------VLRDLRFRYLAA   79 (136)
Q Consensus        22 ~~~Alf~aekl~~~~~~~~~~~~la~~--l~-~~g~~~~A~~~l~~~~---------l----------~~~~~~~~~l~a   79 (136)
                      ++-|+-..+++....|.....+..+..  +. ...+=-+|+.++...-         +          .+.......+.+
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa  344 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT  344 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence            577888889988887744433322222  11 2222234555543221         0          001123456667


Q ss_pred             HHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655           80 KCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVS  131 (136)
Q Consensus        80 ~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~  131 (136)
                      +=|...|+|+-|+..+...+.-.|.+=.-|+.+.++|-.+|+++.|.-..-.
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            7778889999988776655544555666788999999999999999876543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=82.45  E-value=1.9  Score=26.45  Aligned_cols=27  Identities=15%  Similarity=0.033  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          109 CFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ...+|.-..+.|++++|+.+|++|++.
T Consensus        22 lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           22 YAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            346699999999999999999999864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=82.05  E-value=12  Score=27.96  Aligned_cols=121  Identities=11%  Similarity=-0.034  Sum_probs=76.1

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      +...+..++.++|+-....-+--+| +.+--..+.+.|...|+|+||..=|+... +++......-++ +-+.....+.+
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y-r~lI~aE~~R~   82 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL-RHLVKAAQARK   82 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH-HHHHHHHHHHH
Confidence            3456778999999999999999999 88888999999999999999998776543 222221111111 22222222222


Q ss_pred             hhhhh--hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           91 VCRCS--VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        91 a~~~~--~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ..=..  ...+-+-|..-...++........|+.++|.+.=.+|++
T Consensus        83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e  128 (273)
T 1zbp_A           83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  128 (273)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence            11000  000112233334445668888899999999988877765

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=80.68  E-value=2.2  Score=26.32  Aligned_cols=27  Identities=11%  Similarity=0.079  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          109 CFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ...++.-....|++++|..+|+.|++.
T Consensus        19 lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           19 VLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            335588889999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.51
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.47
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.46
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.39
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.34
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.32
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.32
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.31
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.29
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.27
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.2
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.19
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.14
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.11
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.07
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.02
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.0
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.0
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.96
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.94
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.92
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.91
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.9
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.88
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.83
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.8
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.8
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.65
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.57
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.35
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.28
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.28
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.77
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.62
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.47
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.42
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.37
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.28
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.96
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.85
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.75
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	93.91
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	85.88
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	85.84
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.1
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	81.91

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-13  Score=101.91  Aligned_cols=124  Identities=13%  Similarity=-0.090  Sum_probs=91.9

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGT   89 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~   89 (136)
                      +..-+...++++.|+-+.++++.++| +++.++.+|.++...|++.+|+..++... ..+.+....+.+|.++.++|+++
T Consensus       243 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  322 (388)
T d1w3ba_         243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHH
Confidence            33445566777777777777777777 56677777777777777777777665432 24456667777777777777777


Q ss_pred             hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +|++.....+...|..+.+++.+|.+|..+|++++|+.+|++||++
T Consensus       323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7776555444445666778899999999999999999999999975

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.1e-13  Score=96.03  Aligned_cols=99  Identities=14%  Similarity=0.079  Sum_probs=59.1

Q ss_pred             CCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHH
Q 032655           36 TNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGK  114 (136)
Q Consensus        36 ~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~  114 (136)
                      +|+.+.+-..|..++..|+|.+|+..++++ .++|.++.+++.+|.|+.++|+|++|++.....+.-.|.....++.+|.
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            355555666666666666666666665443 3355666666666666666666666666554433333334445566666


Q ss_pred             HHHHcCChHHHHHHHHHhhc
Q 032655          115 AYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       115 ~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +|..+|++++|+.+|++|++
T Consensus        81 ~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            66666666666666666654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=9.2e-13  Score=94.28  Aligned_cols=127  Identities=14%  Similarity=-0.073  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +-.+-.-+...|+|+.|+-..++++.++| +++.++.+|.++...|++.+|+..+++. .+.+.++..++.+|.++..+|
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  119 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  119 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            33444567788999999999999999999 8889999999999999999999988664 447788899999999999999


Q ss_pred             Chhhhhhhh---------------------------------------------hh-----h---------hc-------
Q 032655           87 SGTSVCRCS---------------------------------------------VM-----L---------RL-------  100 (136)
Q Consensus        87 ~~~ea~~~~---------------------------------------------~~-----~---------~~-------  100 (136)
                      ++++|.+..                                             ..     .         .+       
T Consensus       120 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (259)
T d1xnfa_         120 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT  199 (259)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999984210                                             00     0         00       


Q ss_pred             ----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          101 ----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       101 ----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                          ..|.....++.+|.+|..+|++++|+.+|++||+.
T Consensus       200 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         200 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence                11334556788999999999999999999999864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.9e-12  Score=90.35  Aligned_cols=122  Identities=7%  Similarity=-0.118  Sum_probs=99.4

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      .-..+...++|+.|+-..+++  ..|++..++.+|.|++..|+|++|+..++++ .+++.++.+++.+|.|+.++|+|++
T Consensus        11 ~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          11 EGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence            344567889999999988864  3358888999999999999999999988664 5578999999999999999999999


Q ss_pred             hhhhhhhhh---------c----c---cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           91 VCRCSVMLR---------L----L---KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        91 a~~~~~~~~---------~----~---~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |++.....+         +    +   ......+++.+|.+|..+|++++|.+.|..|+++
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            975432110         1    0   1224567899999999999999999999999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.3e-13  Score=97.09  Aligned_cols=121  Identities=12%  Similarity=0.029  Sum_probs=101.2

Q ss_pred             HHHHcCChhhHHHHHHHHhccCC---ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655           15 DCVSKHLYSSAIFFANEVAALTN---DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        15 ~~l~~~~~~~Alf~aekl~~~~~---~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      .....+.+.+|+-..++++.++|   ++..++.+|.++...|++++|+..+++. ...+.++..++.+|.++.++|++++
T Consensus       145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  224 (323)
T d1fcha_         145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  224 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchh
Confidence            44556778899999999999998   3455778999999999999999998764 3356788899999999999999999


Q ss_pred             hhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           91 VCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        91 a~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |++.....+...|....+++.+|.+|..+|++++|+++|++||++
T Consensus       225 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         225 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            998765544333455678899999999999999999999999974

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.4e-12  Score=82.63  Aligned_cols=111  Identities=11%  Similarity=-0.097  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      ++.|+..-..++..|+|+.|+...++++..+| ++..++.+|.|+...|+|..|+..+++. .+.+.++..++.+|.|+.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            55678888888888999999999999998888 7778888899999999999888877554 446778888888888888


Q ss_pred             HccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY  116 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~  116 (136)
                      .+|+|++|+......+...|....+...++.+.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            888888888765544433344445555555543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.7e-12  Score=92.78  Aligned_cols=80  Identities=5%  Similarity=-0.065  Sum_probs=71.8

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      -..++..|++++|+...++++..+| +++.++.+|.|+...|++++|+..+++. .+.+.++..++.+|.++.++|++++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  105 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ  105 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            3457789999999999999999999 7899999999999999999999988664 4567888999999999999999999


Q ss_pred             hh
Q 032655           91 VC   92 (136)
Q Consensus        91 a~   92 (136)
                      |.
T Consensus       106 A~  107 (323)
T d1fcha_         106 AC  107 (323)
T ss_dssp             HH
T ss_pred             cc
Confidence            85

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.2e-12  Score=83.30  Aligned_cols=96  Identities=7%  Similarity=-0.093  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~  118 (136)
                      +++...|..++..|+|++|+..+++. ..+|.++.+++.+|.|+.++|+|++|+......+...|..+..++.+|.+|..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            45677899999999999999988664 45788999999999999999999999986655443335566778999999999


Q ss_pred             cCChHHHHHHHHHhhcc
Q 032655          119 LGNCAQARLWLVSCDEF  135 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL~~  135 (136)
                      +|++++|+.+|++|+++
T Consensus        84 ~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             TTCHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHh
Confidence            99999999999999975

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.4e-11  Score=83.69  Aligned_cols=123  Identities=13%  Similarity=0.017  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~   83 (136)
                      .+.|+..=..+...++|+.|+-+.++++.++| ++..++.+|.|++..|++.+|+..+++. .+.+.+...++.+|.|+.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            35677777788999999999999999999999 8889999999999999999999988665 557889999999999999


Q ss_pred             HccChhhhhhhhhhhhcccchHhHHHHHHHHHHH--HcCChHHHHHH
Q 032655           84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE--ALGNCAQARLW  128 (136)
Q Consensus        84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~--~~~~~~~A~~~  128 (136)
                      .+|+|++|.+.....+.-.|....+...++.+..  ..+.+++|+..
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999988655433222333444445555543  34445666543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=4.5e-12  Score=90.58  Aligned_cols=116  Identities=9%  Similarity=-0.146  Sum_probs=96.0

Q ss_pred             CChhhHHHHHHHHhccCC-C----hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-D----PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~----~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~   93 (136)
                      .+++.|+.-.+.+++..+ .    .+.+|.+|.+|+..|+|++|+..+++. .++|.++.+++.+|.|+.++|++++|++
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            456677777788887654 2    235788899999999999999988665 4578899999999999999999999998


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .....+...|..+.+++.+|.+|..+|++++|+..|+++++.
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            766544444556677899999999999999999999999864

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.5e-11  Score=90.32  Aligned_cols=128  Identities=11%  Similarity=-0.141  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l   85 (136)
                      ....+...+...+.++.|+.+.++++.++| +++.++.+|.++...|+|++|+..+++.. ..+.+..+.+.+|.++.+.
T Consensus       171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  250 (388)
T d1w3ba_         171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ  250 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC
Confidence            344555666677777777777777777777 56667777777777777777777665432 2445566667777777777


Q ss_pred             cChhhhhhh----------------------------------hhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655           86 RSGTSVCRC----------------------------------SVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVS  131 (136)
Q Consensus        86 ~~~~ea~~~----------------------------------~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~  131 (136)
                      |++++|++.                                  ........|....++..+|.++..+|++++|+.+|++
T Consensus       251 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  330 (388)
T d1w3ba_         251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHH
Confidence            777776532                                  1111113355666778889999999999999999999


Q ss_pred             hhcc
Q 032655          132 CDEF  135 (136)
Q Consensus       132 AL~~  135 (136)
                      ||++
T Consensus       331 al~~  334 (388)
T d1w3ba_         331 ALEV  334 (388)
T ss_dssp             HTTS
T ss_pred             HHHh
Confidence            8874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6e-12  Score=85.56  Aligned_cols=96  Identities=10%  Similarity=0.006  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655           40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~  118 (136)
                      +.+...|.+++..|+|++|+..+++. .+++.+..+++.+|.|++.+|++++|++.....+.-.|....+++.+|.+|..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            45667899999999999999988664 45788999999999999999999999987776554445666778999999999


Q ss_pred             cCChHHHHHHHHHhhcc
Q 032655          119 LGNCAQARLWLVSCDEF  135 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL~~  135 (136)
                      +|++++|+.+|++++++
T Consensus        91 ~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          91 LGKFRAALRDYETVVKV  107 (159)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHc
Confidence            99999999999999864

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.27  E-value=2.8e-12  Score=83.05  Aligned_cols=95  Identities=7%  Similarity=-0.140  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE  117 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~  117 (136)
                      .++.+..|.+++..|++.+|+..+++. ...+.++.+++.+|.|+.++|++++|+......+...|....+++.+|.+|.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            457899999999999999999988775 3467889999999999999999999998776655545667788899999999


Q ss_pred             HcCChHHHHHHHHHhh
Q 032655          118 ALGNCAQARLWLVSCD  133 (136)
Q Consensus       118 ~~~~~~~A~~~y~~AL  133 (136)
                      .+|+.++|++++++.|
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999876

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.5e-12  Score=93.53  Aligned_cols=117  Identities=6%  Similarity=-0.077  Sum_probs=79.1

Q ss_pred             HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC-hHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhh
Q 032655           18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH-YRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRC   94 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~-~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~   94 (136)
                      .++.++.|+-..++++.++| +...++..|.++...|+ +++|+..+++. .+.+++..+++..|.++..+|++++|++.
T Consensus        55 ~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~  134 (315)
T d2h6fa1          55 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF  134 (315)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             hCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHH
Confidence            45777888888888888888 67778888888777664 78888777554 44667777888888888888888887765


Q ss_pred             hhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           95 SVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        95 ~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ....+...|....+++.+|.++..+|++++|+++|.+||+
T Consensus       135 ~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         135 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4433322233344555566666666666666666666654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.4e-11  Score=83.62  Aligned_cols=93  Identities=10%  Similarity=-0.039  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655           41 DVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG  120 (136)
Q Consensus        41 ~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~  120 (136)
                      .+|..|.+++..|+|+.|+..+++.  .+.++..++.+|.|++++|+|++|++.....+.-.|..+.+++++|.+|.++|
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            4667899999999999999998764  35677889999999999999999998776655444667788999999999999


Q ss_pred             ChHHHHHHHHHhhcc
Q 032655          121 NCAQARLWLVSCDEF  135 (136)
Q Consensus       121 ~~~~A~~~y~~AL~~  135 (136)
                      ++++|+..|++||+.
T Consensus        85 ~~~~A~~~~~kAl~~   99 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQ   99 (192)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999999999863

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.7e-11  Score=89.65  Aligned_cols=115  Identities=3%  Similarity=-0.089  Sum_probs=100.2

Q ss_pred             ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhh
Q 032655           21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVML   98 (136)
Q Consensus        21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~   98 (136)
                      ++++|+.+.++++..+| ++..++.+|.++...|++++|+..+++. .+++++..+++.+|.++.++|+|++|++.....
T Consensus        93 ~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1          93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            59999999999999999 8899999999999999999999998665 457889999999999999999999999876654


Q ss_pred             hcccchHhHHHHHHHHHHHHcCC------hHHHHHHHHHhhcc
Q 032655           99 RLLKMISSAICFLRGKAYEALGN------CAQARLWLVSCDEF  135 (136)
Q Consensus        99 ~~~~~~~a~i~~l~G~~~~~~~~------~~~A~~~y~~AL~~  135 (136)
                      +...|.....++.+|.++.++++      .++|+++|.+||++
T Consensus       173 l~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~  215 (315)
T d2h6fa1         173 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL  215 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh
Confidence            44445566778899999999888      47899999998864

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.5e-11  Score=78.05  Aligned_cols=92  Identities=5%  Similarity=-0.088  Sum_probs=67.6

Q ss_pred             HHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh--hhc-----ccchHhHHHHHHHH
Q 032655           43 YMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM--LRL-----LKMISSAICFLRGK  114 (136)
Q Consensus        43 ~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~--~~~-----~~~~~a~i~~l~G~  114 (136)
                      --+|.+++..|+|++|+..+++. .+++.++.+++.+|.|+..+|+|++|++....  .++     ..+..+.+++.+|.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34788888888888888877543 44667778888888888888888888764432  121     11334567778899


Q ss_pred             HHHHcCChHHHHHHHHHhhc
Q 032655          115 AYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       115 ~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++..++++++|+++|.+++.
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            99999999999999998875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.6e-10  Score=79.55  Aligned_cols=88  Identities=8%  Similarity=0.030  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~   84 (136)
                      +.|+..=..+...|+|+.|+.+.++++.+.| ++..++.+|.||...|+|.+|+..++++ .++|.++.+++.+|.++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            4566666778889999999999999999999 8888999999999999999999988654 5578889999999999999


Q ss_pred             ccChhhhhhh
Q 032655           85 LRSGTSVCRC   94 (136)
Q Consensus        85 l~~~~ea~~~   94 (136)
                      +|+|++|+..
T Consensus        85 l~~~~~A~~~   94 (201)
T d2c2la1          85 MESYDEAIAN   94 (201)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999999753

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.9e-10  Score=74.86  Aligned_cols=111  Identities=13%  Similarity=-0.032  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC---hHHHHHHHhcCc-cc--ccCcchHHHHHHH
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH---YRRPFHLLNSSK-IV--LRDLRFRYLAAKC   81 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~---~~~A~~~l~~~~-l~--~~~~~~~~l~a~c   81 (136)
                      +..++...++...++.|....++++.++| +++..+.+|+||...++   +++|+.++++.- ..  +.+..++|.+|.|
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            45677788889999999999999999999 89999999999998665   557999987643 22  2335689999999


Q ss_pred             HHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655           82 LEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL  119 (136)
Q Consensus        82 ~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~  119 (136)
                      ++++|+|++|+......+...|....+..+++.|.+++
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            99999999999877665544455566667888887765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=2.9e-10  Score=77.74  Aligned_cols=61  Identities=11%  Similarity=0.092  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           74 FRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        74 ~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++..+|.|+.++|+|++|+......+.-.|..+.+++.+|.+|..+|++++|+.+|++||+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            3444455555555555555433322222233334445555555555555555555555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.02  E-value=4.2e-10  Score=72.48  Aligned_cols=84  Identities=7%  Similarity=-0.098  Sum_probs=75.6

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      -..+...|++++|+.+.++++..+| +++.++.+|.|+...|++.+|+..+++. .++|.++..++.+|.|+..+|++++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence            3456778999999999999999999 8899999999999999999999988664 5578899999999999999999999


Q ss_pred             hhhhhh
Q 032655           91 VCRCSV   96 (136)
Q Consensus        91 a~~~~~   96 (136)
                      |++...
T Consensus       103 A~~~l~  108 (112)
T d1hxia_         103 ALASLR  108 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=8e-10  Score=75.99  Aligned_cols=116  Identities=6%  Similarity=-0.096  Sum_probs=85.2

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-Ch---------------HHHHHHHHHHhccCChHHHHHHHhcC-cccccCc
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DP---------------ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDL   72 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~---------------~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~   72 (136)
                      +..=..+..+++|+.|+.+.++++...| .+               .....+|.||+..|+|++|+..+++. .+.|.++
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~   96 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE   96 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence            3333467788999999999999998876 21               11345899999999999999988664 4477888


Q ss_pred             chHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHH
Q 032655           73 RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQA  125 (136)
Q Consensus        73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A  125 (136)
                      .+++..|.|++.+|+|++|+......+.-.|....+...++.+...++...+.
T Consensus        97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998866544332233455556777787776655544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.00  E-value=9.1e-10  Score=74.47  Aligned_cols=61  Identities=11%  Similarity=0.046  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           74 FRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        74 ~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++..+|.|++++|+|++|++.....+...|...-+++.+|.+|..+|++++|+.+|++|++
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455666666666666665544333222233444556666666666666666666666654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.96  E-value=1.5e-09  Score=73.38  Aligned_cols=102  Identities=16%  Similarity=0.042  Sum_probs=66.4

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCCC-hHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSV   91 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~~-~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea   91 (136)
                      .+..+..|+|+.|+-..++++.+.|+ |+..         ....            ......+++.+|.|+.++|+|++|
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~---------~~~~------------~~~~a~~~~nlg~~~~~lg~~~~A   74 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEE---------AFDH------------AGFDAFCHAGLAEALAGLRSFDEA   74 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---------CCCH------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhh---------hccc------------chhHHHHHHHHHHHHHHcCccchh
Confidence            44455566666666666666666652 2200         0000            001124678899999999999999


Q ss_pred             hhhhhhhh-------c----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           92 CRCSVMLR-------L----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        92 ~~~~~~~~-------~----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+.....+       .    ..+....+++.+|.+|..+|++++|+++|++||++
T Consensus        75 ~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          75 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            76433211       1    11334556789999999999999999999999975

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.94  E-value=1.5e-09  Score=74.29  Aligned_cols=126  Identities=7%  Similarity=-0.058  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-----ChHH-----------HHHHHHHHhccCChHHHHHHHhcC-cc
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-----DPAD-----------VYMQAQALFLGRHYRRPFHLLNSS-KI   67 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-----~~~~-----------~~~la~~l~~~g~~~~A~~~l~~~-~l   67 (136)
                      .++.+++.=..+...++|++|+-..++++...|     +++.           ...+|.||+..|+|.+|+..+++. .+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            356677777888899999999999999997765     1111           234899999999999999988664 45


Q ss_pred             cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChH-HHHHHHH
Q 032655           68 VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCA-QARLWLV  130 (136)
Q Consensus        68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~-~A~~~y~  130 (136)
                      ++.+..+++..|.|+..+|+|++|.+.....+...|....+...+|.+...++... .....|+
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~  157 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA  157 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            78899999999999999999999988665544333445566667788876665443 3344443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=9.4e-09  Score=70.45  Aligned_cols=97  Identities=14%  Similarity=0.039  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc---------------CcchHHHHHHHHHHccChhhhhhhhhhhhccc
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR---------------DLRFRYLAAKCLEELRSGTSVCRCSVMLRLLK  102 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~---------------~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~  102 (136)
                      .+.+...|..+|..|+|.+|+...+++- ..+.               ...++..+|.|+.++|+|++|+......+...
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            3456678999999999999999775532 1111               12456679999999999999998766544444


Q ss_pred             chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          103 MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |..+.+++.+|.+|..+|++++|+.+|++|+++
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            566778899999999999999999999999874

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=2.5e-09  Score=79.41  Aligned_cols=126  Identities=8%  Similarity=-0.049  Sum_probs=100.0

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHH-HHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655           10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADV-YMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR   86 (136)
Q Consensus        10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~-~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~   86 (136)
                      +.++...+..++++.|+.+.++++..+| +...+ +..|.++...|++..|+..+++. .+++.+...++.+|.++.++|
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            4455555666779999999999999999 66665 56788999999999999988664 447788999999999999999


Q ss_pred             Chhhhhhh--------------------------hh----------------------h------------h----hccc
Q 032655           87 SGTSVCRC--------------------------SV----------------------M------------L----RLLK  102 (136)
Q Consensus        87 ~~~ea~~~--------------------------~~----------------------~------------~----~~~~  102 (136)
                      ++++|...                          +.                      .            .    ....
T Consensus       193 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  272 (334)
T d1dcea1         193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN  272 (334)
T ss_dssp             CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            99987310                          00                      0            0    0123


Q ss_pred             chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          103 MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |..+.+++.+|.+|..+|++++|+++|.+|+++
T Consensus       273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            567778889999999999999999999999874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=6.6e-09  Score=70.77  Aligned_cols=121  Identities=11%  Similarity=-0.033  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-----------------ChHHHHHHHHHHhccCChHHHHHHHhcC-c
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-----------------DPADVYMQAQALFLGRHYRRPFHLLNSS-K   66 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-----------------~~~~~~~la~~l~~~g~~~~A~~~l~~~-~   66 (136)
                      +.+.++.....+...++|++|+....+++...|                 ....+..+|.|+...|+|++|+..+++. .
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            445677777788889999999999998876543                 1223566899999999999999988654 5


Q ss_pred             ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHH
Q 032655           67 IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQA  125 (136)
Q Consensus        67 l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A  125 (136)
                      +.+.++.+++..|.|+..+|+|++|++.....+.-.|....+...++.+.+++....++
T Consensus       106 ~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         106 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999866544332233455566778887776655544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.88  E-value=1.7e-08  Score=68.85  Aligned_cols=97  Identities=19%  Similarity=0.079  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHhcCc-ccc---------------cCcchHHHHHHHHHHccChhhhhhhhhhhhccc
Q 032655           39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVL---------------RDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLK  102 (136)
Q Consensus        39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~---------------~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~  102 (136)
                      .+...-.|..++..|+|..|+...+++- ..+               ....++..+|.|++++|+|++|+......+...
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            3456678999999999999998775532 111               122345679999999999999998665444334


Q ss_pred             chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          103 MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |....+++.+|.+|..+|++++|+.+|.+||++
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            556677899999999999999999999999975

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.83  E-value=9.2e-10  Score=74.10  Aligned_cols=71  Identities=7%  Similarity=-0.017  Sum_probs=48.9

Q ss_pred             HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHH----------HHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655           17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRR----------PFHLLNSS-KIVLRDLRFRYLAAKCLEE   84 (136)
Q Consensus        17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~----------A~~~l~~~-~l~~~~~~~~~l~a~c~~~   84 (136)
                      -+.+.|+.|+-..++++.++| +++.++.+|.+++..+++..          |+..+++. .++|.++.+++.+|.++..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            345669999999999999999 88899999999998777654          44444332 2344455555555555554


Q ss_pred             ccC
Q 032655           85 LRS   87 (136)
Q Consensus        85 l~~   87 (136)
                      +|+
T Consensus        88 ~g~   90 (145)
T d1zu2a1          88 FAF   90 (145)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.81  E-value=9.6e-09  Score=75.72  Aligned_cols=123  Identities=11%  Similarity=0.007  Sum_probs=101.8

Q ss_pred             HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655           13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS   90 (136)
Q Consensus        13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e   90 (136)
                      .++.+..|++++|+-..++++..+| +++....+|++|...|++++|+..++.. .+.+.+......++..+...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            3678889999999999999999999 8899999999999999999999988665 4567888888999999988888888


Q ss_pred             hhhhhhhh-hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           91 VCRCSVML-RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        91 a~~~~~~~-~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      +....... ....|......++.+.++...|+.++|.+.+.++++.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            76533221 1123445566678899999999999999999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=6.2e-08  Score=70.89  Aligned_cols=133  Identities=12%  Similarity=0.004  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC---Ch----HHHHHHHHHHhccCChHHHHHHHhcCc-ccc-----
Q 032655            3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN---DP----ADVYMQAQALFLGRHYRRPFHLLNSSK-IVL-----   69 (136)
Q Consensus         3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~~----~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~-----   69 (136)
                      ++..+-....-.-+-..++|++|+...+|++.+.+   ++    ..+..+|.||...|+|.+|+..+++.. +.+     
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            34455566666777788999999999999998863   33    246778999999999999999886642 211     


Q ss_pred             -cCcchHHHHHHHHHH-ccChhhhhhhhhhh-----hcc-cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           70 -RDLRFRYLAAKCLEE-LRSGTSVCRCSVML-----RLL-KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        70 -~~~~~~~l~a~c~~~-l~~~~ea~~~~~~~-----~~~-~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                       ....+...+|.++.. +|++++|++.....     .++ .+....++..+|.+|..+|++++|++.|+++++.
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence             123566777777755 79999998754321     112 2345566778899999999999999999998864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.2e-09  Score=70.51  Aligned_cols=91  Identities=12%  Similarity=-0.081  Sum_probs=71.5

Q ss_pred             HHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccCh---hhhhhhhhhhh--cccchHhHHHHHHHHHHHH
Q 032655           45 QAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG---TSVCRCSVMLR--LLKMISSAICFLRGKAYEA  118 (136)
Q Consensus        45 la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~---~ea~~~~~~~~--~~~~~~a~i~~l~G~~~~~  118 (136)
                      ++..+...+++.+|.+..++. .+.+.++.+++.+|.|+.+.++.   ++|+......+  ++.|....+++++|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            566777889999999988664 44778999999999999975554   45666544333  3334456688999999999


Q ss_pred             cCChHHHHHHHHHhhcc
Q 032655          119 LGNCAQARLWLVSCDEF  135 (136)
Q Consensus       119 ~~~~~~A~~~y~~AL~~  135 (136)
                      +|++++|+.+|++||++
T Consensus        85 ~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHh
Confidence            99999999999999975

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=2.7e-09  Score=79.22  Aligned_cols=117  Identities=9%  Similarity=-0.051  Sum_probs=93.4

Q ss_pred             HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC--hHHHHHHHhcC-cccccCcch-HHHHHHHHHHccChhhhh
Q 032655           18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH--YRRPFHLLNSS-KIVLRDLRF-RYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~--~~~A~~~l~~~-~l~~~~~~~-~~l~a~c~~~l~~~~ea~   92 (136)
                      ..++++.|+-+.++++..+| ++..++.+|.++...|+  +.+|+..+++. ..++++... .++.|.++...+++++|+
T Consensus        85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al  164 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL  164 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHH
Confidence            34568899999999999999 88999999999988886  78999887664 334555555 568889999999999998


Q ss_pred             hhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           93 RCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        93 ~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      +.....+...|....+++.+|.++..+|++++|...|+++++
T Consensus       165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~  206 (334)
T d1dcea1         165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN  206 (334)
T ss_dssp             HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence            866554444456777888999999999999888777766554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.70  E-value=5.1e-08  Score=65.53  Aligned_cols=112  Identities=11%  Similarity=-0.062  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhccCC-C----hH------------HHHHHHHHHhccCChHHHHHHHhcC-ccccc
Q 032655            9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-D----PA------------DVYMQAQALFLGRHYRRPFHLLNSS-KIVLR   70 (136)
Q Consensus         9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~----~~------------~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~   70 (136)
                      ++..=..+...++|..|+-...+++...| .    +.            ....+|.||+..|+|.+|+..+++. .++|.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            44444567788999999999999987765 1    11            1234899999999999999988664 45778


Q ss_pred             CcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655           71 DLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG  120 (136)
Q Consensus        71 ~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~  120 (136)
                      +..+++..|.|+..+|+|++|.......+.-.|..+.+...++.+..+++
T Consensus       100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         100 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999998765544333445556667777776654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.3e-07  Score=61.58  Aligned_cols=90  Identities=12%  Similarity=0.033  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcch-------HHHH
Q 032655            8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRF-------RYLA   78 (136)
Q Consensus         8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~-------~~l~   78 (136)
                      +.+.+=..+...++|+.|+...++++.++| ++..++.+|.||+..|+|.+|+..++.. .+++.++..       ++-.
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            345555567788999999999999999999 7888999999999999999999988664 345666654       4455


Q ss_pred             HHHHHHccChhhhhhhhhh
Q 032655           79 AKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        79 a~c~~~l~~~~ea~~~~~~   97 (136)
                      |.++..+++|++|++....
T Consensus        86 g~~~~~~~~~~~A~~~~~k  104 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNK  104 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHH
Confidence            5666777777777765443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=5.5e-07  Score=64.35  Aligned_cols=121  Identities=10%  Similarity=-0.070  Sum_probs=91.7

Q ss_pred             HHHHHcCChhhHHHHHHHHhccCC-ChH-----HHHHHHHHHhccCChHHHHHHHhcCc-ccc------cCcchHHHHHH
Q 032655           14 RDCVSKHLYSSAIFFANEVAALTN-DPA-----DVYMQAQALFLGRHYRRPFHLLNSSK-IVL------RDLRFRYLAAK   80 (136)
Q Consensus        14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~-----~~~~la~~l~~~g~~~~A~~~l~~~~-l~~------~~~~~~~l~a~   80 (136)
                      +-++..|+++.|+-++++++...| ++.     ....+|.+++..|++.+|+..++... +.+      ......+..+.
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            445789999999999999999998 322     36678999999999999999886542 111      22356788899


Q ss_pred             HHHHccChhhhhhhhhhh-------h-cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           81 CLEELRSGTSVCRCSVML-------R-LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        81 c~~~l~~~~ea~~~~~~~-------~-~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ++...|++.++.......       . ...+..+.+...+|.++..+|+.+.|..+|.+++.
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~  161 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE  161 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            999999999997643221       1 12234555666889999999999999999988775

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.3e-08  Score=78.92  Aligned_cols=116  Identities=6%  Similarity=-0.168  Sum_probs=68.0

Q ss_pred             cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655           19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM   97 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~   97 (136)
                      .+.|+.|+....+.+.+.| +......+|.++...|++..|....++.. ......+.+.+|..+...|+|++|+.....
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~  177 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRH  177 (497)
T ss_dssp             HHHHHHHHHHHTC-------------------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4567777777777777777 67788899999999999999988665432 122346788899999999999999987766


Q ss_pred             hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+...|.....++.+|.+|...|+..+|+.+|.+||..
T Consensus       178 A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            55555667778899999999999999999999999964

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1e-07  Score=59.26  Aligned_cols=81  Identities=5%  Similarity=-0.143  Sum_probs=47.2

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC-------cchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHH
Q 032655           38 DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD-------LRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAIC  109 (136)
Q Consensus        38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~-------~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~  109 (136)
                      +++|.|.+|..++..|+|.+|+..++++- +.+.+       ..+.+.+|.|++++|+|++|++.....+.-.|....+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            46777888888888888888877665431 11111       24566667777777777777665544333233344455


Q ss_pred             HHHHHHHHH
Q 032655          110 FLRGKAYEA  118 (136)
Q Consensus       110 ~l~G~~~~~  118 (136)
                      .+++.+.+.
T Consensus        84 ~Nl~~~~~~   92 (95)
T d1tjca_          84 GNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=2.3e-06  Score=60.96  Aligned_cols=124  Identities=11%  Similarity=-0.064  Sum_probs=91.3

Q ss_pred             HHHHHHHcCChhhHHHHHHHHhccCC----C----hHHHHHHHHHHhccCChHHHHHHHhcCcc-cc----cCcchHHHH
Q 032655           12 LVRDCVSKHLYSSAIFFANEVAALTN----D----PADVYMQAQALFLGRHYRRPFHLLNSSKI-VL----RDLRFRYLA   78 (136)
Q Consensus        12 ~i~~~l~~~~~~~Alf~aekl~~~~~----~----~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~----~~~~~~~l~   78 (136)
                      ....+...+.+..|.-..+++....+    .    +......|..+...|++.+|...++...- .+    ........+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            33445566788888888777776553    1    12356678899999999999998866432 22    223456778


Q ss_pred             HHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           79 AKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        79 a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      |.++..+|++++|.......      ....|..+.++.++|.+|..+|++++|.+.|++||++
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999998754322      1233566778889999999999999999999999875

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.37  E-value=1.6e-06  Score=57.82  Aligned_cols=77  Identities=17%  Similarity=0.050  Sum_probs=53.7

Q ss_pred             CChhhHHHHHHHHhccCC-C-----hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc-----------CcchHHHHHHH
Q 032655           20 HLYSSAIFFANEVAALTN-D-----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR-----------DLRFRYLAAKC   81 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~-----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~-----------~~~~~~l~a~c   81 (136)
                      ..|+.|+......-...+ .     ...+..+|.||...|+|+.|+...+... +.++           ...+++..|.+
T Consensus        30 ~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~  109 (156)
T d2hr2a1          30 ANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALA  109 (156)
T ss_dssp             HHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHH
Confidence            356667776666544433 1     2346678999999999999998775532 1111           22367889999


Q ss_pred             HHHccChhhhhhhhh
Q 032655           82 LEELRSGTSVCRCSV   96 (136)
Q Consensus        82 ~~~l~~~~ea~~~~~   96 (136)
                      +.++|++++|++...
T Consensus       110 ~~~lg~~eeA~~~~~  124 (156)
T d2hr2a1         110 LDGLGRGAEAMPEFK  124 (156)
T ss_dssp             HHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=6.4e-07  Score=55.49  Aligned_cols=61  Identities=10%  Similarity=-0.125  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHccChhhhhhhhhhhh-------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           75 RYLAAKCLEELRSGTSVCRCSVMLR-------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        75 ~~l~a~c~~~l~~~~ea~~~~~~~~-------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .|.+|..+++.|+|++|++.....+       ...+..+.++..+|.+|.++|++++|+.+|++||++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            4889999999999999987543211       122346778889999999999999999999999975

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=1.9e-06  Score=59.42  Aligned_cols=117  Identities=9%  Similarity=-0.063  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhccCCCh-HHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHc
Q 032655            7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTNDP-ADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus         7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~-~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l   85 (136)
                      +.+...-......|++++|+-..++++++.+++ -..       +..+.+-..    ....+......+....+.++.++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~-------~~~~~w~~~----~r~~l~~~~~~a~~~la~~~~~~   80 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-------LRDFQFVEP----FATALVEDKVLAHTAKAEAEIAC   80 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-------GTTSTTHHH----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc-------CcchHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
Confidence            344445567788999999999999999998732 110       011111111    01111234567888899999999


Q ss_pred             cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |+|++|+......+...|....++..+|.+|.++|++.+|+..|.++.+
T Consensus        81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999998876655544566778889999999999999999999998743

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=1.6e-05  Score=57.63  Aligned_cols=130  Identities=8%  Similarity=-0.145  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC---C----hHHHHHHHHHHhc-cCChHHHHHHHhcCc-ccc------c
Q 032655            6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN---D----PADVYMQAQALFL-GRHYRRPFHLLNSSK-IVL------R   70 (136)
Q Consensus         6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~----~~~~~~la~~l~~-~g~~~~A~~~l~~~~-l~~------~   70 (136)
                      ..-+..+-.-+...+.++.|+...++++.+.+   +    ......+|.++.. .|+|.+|+..++++. +.+      .
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~  156 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            34456666677889999999999999998875   2    2236677888865 699999999886642 211      1


Q ss_pred             CcchHHHHHHHHHHccChhhhhhhhhhhh--c---c-c-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           71 DLRFRYLAAKCLEELRSGTSVCRCSVMLR--L---L-K-MISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        71 ~~~~~~l~a~c~~~l~~~~ea~~~~~~~~--~---~-~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ...+...+|.++.++|+|++|++......  .   + . ......++..|.++...|+.+.|...|.+++++
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            24567889999999999999987543211  1   1 1 223345668899999999999999999998764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.77  E-value=0.00014  Score=46.80  Aligned_cols=108  Identities=14%  Similarity=0.004  Sum_probs=78.2

Q ss_pred             ChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhhhhhhhh
Q 032655           21 LYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTSVCRCSV   96 (136)
Q Consensus        21 ~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~ea~~~~~   96 (136)
                      +++.|+.|.+|+... +++...+.++.  ....++++|+..++++. ...++.+.+.+|..+..    -+++++|.+...
T Consensus         8 d~~~A~~~~~kaa~~-g~~~a~~~l~~--~~~~~~~~a~~~~~~aa-~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~   83 (133)
T d1klxa_           8 DLKKAIQYYVKACEL-NEMFGCLSLVS--NSQINKQKLFQYLSKAC-ELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS   83 (133)
T ss_dssp             HHHHHHHHHHHHHHT-TCTTHHHHHHT--CTTSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-CChhhhhhhcc--ccccCHHHHHHHHhhhh-cccchhhhhhHHHhhhhccccchhhHHHHHHHh
Confidence            678999999999765 46667777774  45577899999887653 24677888999999876    345566665443


Q ss_pred             hhhcccchHhHHHHHHHHHHHH----cCChHHHHHHHHHhhc
Q 032655           97 MLRLLKMISSAICFLRGKAYEA----LGNCAQARLWLVSCDE  134 (136)
Q Consensus        97 ~~~~~~~~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL~  134 (136)
                      ...+.  ..+..++.+|.+|..    ..|.++|+++|++|-+
T Consensus        84 ~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          84 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             hhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            32221  123456889999988    4689999999999864

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=0.00014  Score=49.63  Aligned_cols=60  Identities=7%  Similarity=-0.083  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655            5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS   64 (136)
Q Consensus         5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~   64 (136)
                      .++-+..+...++..|+|+.|+.++++++.++| +...+..++.+|...|++.+|+..++.
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~  126 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  126 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344556667777777888888888888888887 555677778888888887777776655

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=7.9e-05  Score=58.13  Aligned_cols=112  Identities=8%  Similarity=-0.028  Sum_probs=52.6

Q ss_pred             hhhHHHHHHHHhccCCChH----HHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655           22 YSSAIFFANEVAALTNDPA----DVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV   96 (136)
Q Consensus        22 ~~~Alf~aekl~~~~~~~~----~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~   96 (136)
                      |.+++-...+.....++++    ...+++......|.|+.|+..+++ .++.+.+....+..|..+.+.|++++|.....
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  144 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS  144 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CC
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence            3445555555554443221    233445555567889999987754 45566778888999999999999999886544


Q ss_pred             hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           97 MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        97 ~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..+...+  ...+..+|.++...|++++|+.+|++|+++
T Consensus       145 ~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l  181 (497)
T d1ya0a1         145 SSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQL  181 (497)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3222112  234567899999999999999999999874

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.47  E-value=0.00044  Score=48.47  Aligned_cols=66  Identities=6%  Similarity=0.052  Sum_probs=32.8

Q ss_pred             HHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHH
Q 032655           16 CVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLE   83 (136)
Q Consensus        16 ~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~   83 (136)
                      ....+++++|+-|.+|+... ++++..+.+|.+|+.    ..++..|...++... ...++...+.+|..+.
T Consensus        12 ~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~~~~a~~~l~~~~~   81 (265)
T d1ouva_          12 SYKEKDFTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLNYSNGCHLLGNLYY   81 (265)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-cccccchhhccccccc
Confidence            33445666666666665432 345555666666554    445555555544322 1234444444554444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.00022  Score=46.40  Aligned_cols=82  Identities=11%  Similarity=-0.045  Sum_probs=55.6

Q ss_pred             CChHHHHHHHHHHhccCCh---HHHHHHHhcCc-cccc-CcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHH
Q 032655           37 NDPADVYMQAQALFLGRHY---RRPFHLLNSSK-IVLR-DLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFL  111 (136)
Q Consensus        37 ~~~~~~~~la~~l~~~g~~---~~A~~~l~~~~-l~~~-~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l  111 (136)
                      |+++.-|.+|+|+..+.+.   .+++.+|+..- .++. +-+|+|.+|..++++|+|++|.......+...|....+..+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            4788999999999987664   58888886632 2333 34799999999999999999987655443322333333344


Q ss_pred             HHHHHHH
Q 032655          112 RGKAYEA  118 (136)
Q Consensus       112 ~G~~~~~  118 (136)
                      +-.|-++
T Consensus       113 ~~~Ie~~  119 (124)
T d2pqrb1         113 KSMVEDK  119 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.0014  Score=47.18  Aligned_cols=32  Identities=6%  Similarity=-0.127  Sum_probs=24.2

Q ss_pred             chHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655          103 MISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus       103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |....++.-.+......|+.++|...|++|++
T Consensus       200 p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            44455566668888888888888888888875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.00077  Score=48.64  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHhccCC-ChHHHHHHHHHHhccC--------------ChHHHHHHHhcCc--ccccCcchHHHHHHHHHHc
Q 032655           23 SSAIFFANEVAALTN-DPADVYMQAQALFLGR--------------HYRRPFHLLNSSK--IVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus        23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g--------------~~~~A~~~l~~~~--l~~~~~~~~~l~a~c~~~l   85 (136)
                      +.+.+..+|++...| +|+-|+.+++-+-.+|              .+++|..+++++-  ..+.+...++.++......
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~  112 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            335555666666555 4555555444332222              1234444444321  1234444555566666666


Q ss_pred             cChhhhhhhhhhhhcccch-HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           86 RSGTSVCRCSVMLRLLKMI-SSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        86 ~~~~ea~~~~~~~~~~~~~-~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      |++++|.......+...|. ...++...+....+.|+.+.|...|++|++
T Consensus       113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~  162 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6666654433222211111 122333444444555555555555555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.28  E-value=8e-05  Score=49.00  Aligned_cols=73  Identities=8%  Similarity=0.014  Sum_probs=53.9

Q ss_pred             cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC-----------hHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655           19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH-----------YRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL   85 (136)
Q Consensus        19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~-----------~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l   85 (136)
                      ...++.|+...++++.++| +++.++.+|.+|...|+           |.+|...+++. .+.|.+...+..++.|.-..
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            3567899999999999999 88999999999988764           56676666554 23556666666666666666


Q ss_pred             cChhhh
Q 032655           86 RSGTSV   91 (136)
Q Consensus        86 ~~~~ea   91 (136)
                      +.|.|+
T Consensus       134 ~~~~e~  139 (145)
T d1zu2a1         134 QLHAEA  139 (145)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.96  E-value=0.00061  Score=49.23  Aligned_cols=83  Identities=10%  Similarity=-0.170  Sum_probs=64.8

Q ss_pred             HHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHH
Q 032655           46 AQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQ  124 (136)
Q Consensus        46 a~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~  124 (136)
                      ++-.+..|++.+|+..+++. +..|.+...+..+|.++...|++++|...........|....+..++|.++...+.+++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            34567889999999988664 45789999999999999999999999876654443445566777788888888777776


Q ss_pred             HHHH
Q 032655          125 ARLW  128 (136)
Q Consensus       125 A~~~  128 (136)
                      +...
T Consensus        83 a~~~   86 (264)
T d1zbpa1          83 FAQG   86 (264)
T ss_dssp             HTTS
T ss_pred             HHHH
Confidence            6543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.85  E-value=0.0066  Score=42.06  Aligned_cols=94  Identities=12%  Similarity=-0.024  Sum_probs=60.4

Q ss_pred             ChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhhhhhhhhhhhcccchHhHHH
Q 032655           38 DPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTSVCRCSVMLRLLKMISSAIC  109 (136)
Q Consensus        38 ~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~ea~~~~~~~~~~~~~~a~i~  109 (136)
                      +++..+.+|.++..    ..+...+...++... ...++.+.+.+|.++..    .+++++|+.........  ..+..+
T Consensus       141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~-~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~  217 (265)
T d1ouva_         141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGC  217 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             ccchhhhhhhhhccCCCcccccccchhhhhccc-cccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHH
Confidence            45567777777765    333444544444322 23467777888888877    56677776544432221  134567


Q ss_pred             HHHHHHHHH----cCChHHHHHHHHHhhc
Q 032655          110 FLRGKAYEA----LGNCAQARLWLVSCDE  134 (136)
Q Consensus       110 ~l~G~~~~~----~~~~~~A~~~y~~AL~  134 (136)
                      +.+|.+|..    ..|.++|.++|++|.+
T Consensus       218 ~~LG~~y~~G~g~~~n~~~A~~~~~kAa~  246 (265)
T d1ouva_         218 FNLGAMQYNGEGVTRNEKQAIENFKKGCK  246 (265)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence            899999987    4489999999999864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.019  Score=36.83  Aligned_cols=66  Identities=11%  Similarity=-0.013  Sum_probs=49.0

Q ss_pred             cCcchHHHHHHHHHHccChhhh---hhhhhhhhcccch-HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655           70 RDLRFRYLAAKCLEELRSGTSV---CRCSVMLRLLKMI-SSAICFLRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus        70 ~~~~~~~l~a~c~~~l~~~~ea---~~~~~~~~~~~~~-~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      .+...+|.+|-|+.+....++.   +......+...|. ....+|.+|..|-++|++++|..++.++|++
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            5678999999999988777553   3322221222332 3467789999999999999999999999975

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=93.91  E-value=0.12  Score=32.26  Aligned_cols=72  Identities=7%  Similarity=-0.004  Sum_probs=54.9

Q ss_pred             CChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhhh
Q 032655           20 HLYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTSV   91 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~ea   91 (136)
                      .+++.|+.|.+++... ++++..+.+|..|..    ..++.+|+.+++++- ...++.+.+.+|.++..    -+++++|
T Consensus        37 ~~~~~a~~~~~~aa~~-g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~~g~~~a~~~Lg~~y~~G~gv~~d~~~A  114 (133)
T d1klxa_          37 INKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCLILGYKQYAGKGVVKNEKQA  114 (133)
T ss_dssp             SCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             cCHHHHHHHHhhhhcc-cchhhhhhHHHhhhhccccchhhHHHHHHHhhhh-ccCcchHHHHHHHHHHcCCccCCCHHHH
Confidence            5688999999998653 588899999998875    456899999987753 24677888999998887    3456666


Q ss_pred             hh
Q 032655           92 CR   93 (136)
Q Consensus        92 ~~   93 (136)
                      ..
T Consensus       115 ~~  116 (133)
T d1klxa_         115 VK  116 (133)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.88  E-value=0.39  Score=37.12  Aligned_cols=67  Identities=19%  Similarity=0.128  Sum_probs=58.0

Q ss_pred             HHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhh
Q 032655           26 IFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVC   92 (136)
Q Consensus        26 lf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~   92 (136)
                      .--|.|.+.+-+..+.+...|+-.+..|+|.-|.++++..-. ++.+...+.++|.++.++|.-.+..
T Consensus       417 ~~~a~~~v~~~GG~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~~  484 (505)
T d2cfua2         417 EDSAGRYVEYMGGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENA  484 (505)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcCH
Confidence            346788888888899999999999999999999999877544 6789999999999999999887754

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=85.84  E-value=3.6  Score=30.22  Aligned_cols=114  Identities=8%  Similarity=-0.057  Sum_probs=65.7

Q ss_pred             CChhhHHHHHHHHhccCC-ChHH----HHHHHHHHhccCChHHHHHHHhcCcccccCcc-hHHHHHHHHHHccChhhhhh
Q 032655           20 HLYSSAIFFANEVAALTN-DPAD----VYMQAQALFLGRHYRRPFHLLNSSKIVLRDLR-FRYLAAKCLEELRSGTSVCR   93 (136)
Q Consensus        20 ~~~~~Alf~aekl~~~~~-~~~~----~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~-~~~l~a~c~~~l~~~~ea~~   93 (136)
                      .+++.|+..-++.-.-.+ +++.    ...++..+...|....+...+........+.. ..-..+. .+..+++..+..
T Consensus       228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~  306 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNT  306 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHH
T ss_pred             cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHH
Confidence            456677766666655444 3332    23344455666777777776654432122222 2223333 344567766554


Q ss_pred             hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655           94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE  134 (136)
Q Consensus        94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~  134 (136)
                      ............+...|=+|+.++++|+.+.|..+|..+-.
T Consensus       307 ~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            32211111223456678999999999999999999998753

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.10  E-value=0.65  Score=27.15  Aligned_cols=25  Identities=16%  Similarity=0.115  Sum_probs=21.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          111 LRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       111 l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      -+..-+.+.|++++|++|+++|.++
T Consensus        13 RrAer~l~~~rydeAIech~kA~~y   37 (83)
T d2crba1          13 RRADRLLAAGKYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5677888999999999999988754

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.91  E-value=0.91  Score=26.88  Aligned_cols=31  Identities=16%  Similarity=0.145  Sum_probs=25.1

Q ss_pred             HhHHHH-HHHHHHHHcCChHHHHHHHHHhhcc
Q 032655          105 SSAICF-LRGKAYEALGNCAQARLWLVSCDEF  135 (136)
Q Consensus       105 ~a~i~~-l~G~~~~~~~~~~~A~~~y~~AL~~  135 (136)
                      ..++-+ -++.-+...|++++|+.+|.+|+++
T Consensus        13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334434 5699999999999999999999864