Citrus Sinensis ID: 032657

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGRDKH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MEDLLGWFLVFIFLISLLGILSYQLMYLTdlegdyinpydsaAQINMlvfpefftqGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGRDKH
Flexible Loop (DISEMBL)
MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGRDKH
Low Complexity Region (SEG)
MEDLLGWflvfiflisllgilSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHlrlyklcyliillvlciFWLLWTVGRDKH
Disordered region (IsUnstruct)
***LLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVG****
Disordered Region (DISOPRED)
MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGR***
Disordered Region (DISEMBL)
MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGRDKH
Disordered Region (DISPRO)
*EDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGRD**
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGRDKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q84W04	137	Protein cornichon homolog	yes	no	0.985	0.978	0.574	1e-39
Q8GWT5	137	Protein cornichon homolog	no	no	0.985	0.978	0.552	1e-33
Q3EDD7	129	Probable protein cornicho	no	no	0.823	0.868	0.580	2e-33
Q9SZ74	135	Protein cornichon homolog	no	no	0.985	0.992	0.470	5e-32
Q9C7D7	146	Protein cornichon homolog	no	no	0.919	0.856	0.424	1e-25
P53173	138	ER-derived vesicles prote	yes	no	0.772	0.760	0.377	5e-14
P38312	142	ER-derived vesicles prote	no	no	0.566	0.542	0.389	2e-10
Q3T126	139	Protein cornichon homolog	yes	no	0.639	0.625	0.340	5e-09
Q5R9M4	139	Protein cornichon homolog	yes	no	0.639	0.625	0.329	9e-09
Q9P003	139	Protein cornichon homolog	yes	no	0.639	0.625	0.329	9e-09

>sp|Q84W04|CNIH4_ARATH Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 102/134 (76%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M D+  W + F FLI+L+GI+ YQL+ L DLE DYINPYDSA++IN +V PEF  QG LC
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + +L+T HWFM LL LPYLY+N  LY++RQHLVDVTEI++ L WEK  RL+KL Y+++ L
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 VLCIFWLLWTVGRD 134
            L IFW++++   D
Sbjct: 121 FLTIFWMIYSALDD 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWT5|CNIH3_ARATH Protein cornichon homolog 3 OS=Arabidopsis thaliana GN=At1g62880 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 101/134 (75%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M ++  W + F+ LI+LLG++ YQL+ L DLE DYINPYDSA++IN +V PE   QG LC
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + +L+T HWFM LL +PYLY+N  LY+R+QHL+DVTEI++ L WEK  RL+KL Y+I+ L
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 VLCIFWLLWTVGRD 134
            L IFWL+++   D
Sbjct: 121 FLTIFWLIYSTLDD 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDD7|CNIH2_ARATH Probable protein cornichon homolog 2 OS=Arabidopsis thaliana GN=At1g12340 PE=2 SV=2

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 86/112 (76%)

Query: 23  YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
           + L+ L DLE DYINPYDSA++IN +V PEF  QG LC+ +L+T HWFM LL LPYLY+N
Sbjct: 15  FHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYN 74

Query: 83  VRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGRD 134
             LY++RQHLVDVTEI++ L WEK  RL+KL Y+++ L L IFW++++   D
Sbjct: 75  FHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDD 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ74|CNIH5_ARATH Protein cornichon homolog 5 OS=Arabidopsis thaliana GN=At4g12090 PE=2 SV=2

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 96/134 (71%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M DLL W + F+FL +L+ I+ YQL  L DLE D INPYD +++IN +V PEF  QG LC
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + +++T HWFM +LSLP+L++N+RLY +R+HL DVTE+Y+   WE+  R+YK+ ++ + +
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 VLCIFWLLWTVGRD 134
            +  +WL+ +   D
Sbjct: 121 FITTYWLIHSALGD 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7D7|CNIH1_ARATH Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 87/125 (69%)

Query: 3   DLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCIL 62
           DL  W + F   ++L+  + YQ++ LTDLE DY+NP++++ +IN LV PEF  QG+LC+L
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  FLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVL 122
           FL+T HW  FL+++P   ++  LY  R++L+DVTE++  +++EK LR  KL + + L ++
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

Query: 123 CIFWL 127
            +F L
Sbjct: 124 VVFRL 128

Arabidopsis thaliana (taxid: 3702)

>sp|P53173|ERV14_YEAST ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV14 PE=1 SV=3

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)

Query: 10  VFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHW 69
           V +  I+L G + + ++Y  DLE DYINP +  +++N L+ PE    G L +LFL+  +W
Sbjct: 10  VVVNCINLFGQVHFTILY-ADLEADYINPIELCSKVNKLITPEAALHGALSLLFLLNGYW 68

Query: 70  FMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCY 115
           F+FLL+LP L +N+     +  L+D TEI+  L   K     KL +
Sbjct: 69  FVFLLNLPVLAYNLNKIYNKVQLLDATEIFRTLGKHKRESFLKLGF 114

Could regulate export of the bud site and axial growth sites selection protein AXL2 and possibly other secretory proteins from the endoplasmic reticulum in COPII-coated vesicles. Seems to be required for axial budding pattern in haploid cells.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P38312|ERV15_YEAST ER-derived vesicles protein ERV15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV15 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 45/77 (58%)

Query: 30  DLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRR 89
           DLE DYIN  +   ++N L  PE   Q  +  LFL   +WF+FLL++P L +N     ++
Sbjct: 32  DLEADYINSIELCKRVNRLSVPEAILQAFISALFLFNGYWFVFLLNVPVLAYNASKVYKK 91

Query: 90  QHLVDVTEIYSQLTWEK 106
            HL+D T+I+ +L   K
Sbjct: 92  THLLDATDIFRKLGRCK 108

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q3T126|CNIH4_BOVIN Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 23  YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
           Y ++ L+DLE DYIN     +++N  V PE      + +L LI+ HWF+FLL+LP   +N
Sbjct: 22  YFIITLSDLECDYINARSCCSKLNKWVIPELVGHTLVTVLMLISLHWFIFLLNLPVAAWN 81

Query: 83  VRLY----TRRQHLVDVTEIYSQLTWEKHLR 109
           +  Y    +    + D TEI+++   + H++
Sbjct: 82  IYRYIMVPSGNMGVFDPTEIHNRGQLKSHMK 112

Bos taurus (taxid: 9913)

>sp|Q5R9M4|CNIH4_PONAB Protein cornichon homolog 4 OS=Pongo abelii GN=CNIH4 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 23  YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
           Y ++ L+DLE DYIN     +++N  V PE      + +L L++ HWF+FLL+LP   +N
Sbjct: 22  YFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWN 81

Query: 83  VRLY----TRRQHLVDVTEIYSQLTWEKHLR 109
           +  Y    +    + D TEI+++   + H++
Sbjct: 82  IYRYIMVPSGNMGVFDPTEIHNRGQLKSHMK 112

Pongo abelii (taxid: 9601)

>sp|Q9P003|CNIH4_HUMAN Protein cornichon homolog 4 OS=Homo sapiens GN=CNIH4 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 23  YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
           Y ++ L+DLE DYIN     +++N  V PE      + +L L++ HWF+FLL+LP   +N
Sbjct: 22  YFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWN 81

Query: 83  VRLY----TRRQHLVDVTEIYSQLTWEKHLR 109
           +  Y    +    + D TEI+++   + H++
Sbjct: 82  IYRYIMVPSGNMGVFDPTEIHNRGQLKSHMK 112

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
225453913	134	PREDICTED: protein cornichon homolog 4 [	0.970	0.985	0.606	1e-41
224125076	138	predicted protein [Populus trichocarpa]	0.992	0.978	0.592	6e-39
449460435	136	PREDICTED: probable protein cornichon ho	1.0	1.0	0.580	3e-38
30682747	137	protein cornichon-4 [Arabidopsis thalian	0.985	0.978	0.574	7e-38
225470289	138	PREDICTED: protein cornichon homolog 4 [	0.985	0.971	0.604	7e-38
297844102	137	cornichon family protein [Arabidopsis ly	0.985	0.978	0.567	1e-37
449459670	137	PREDICTED: protein cornichon homolog 4-l	0.985	0.978	0.574	2e-37
351726946	136	uncharacterized protein LOC100306239 [Gl	1.0	1.0	0.536	7e-37
147828483	149	hypothetical protein VITISV_027918 [Viti	0.919	0.838	0.632	3e-36
224071609	138	predicted protein [Populus trichocarpa]	0.992	0.978	0.592	9e-36

>gi|225453913|ref|XP_002279334.1| PREDICTED: protein cornichon homolog 4 [Vitis vinifera] gi|296089153|emb|CBI38856.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 106/132 (80%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M DL+ W L F F  SL+G++ YQLM L DLE DY+NPYDS+++IN ++ PEF  QG LC
Sbjct: 1   MGDLMSWLLSFFFHGSLVGLIGYQLMCLADLEFDYMNPYDSSSRINRVILPEFIIQGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           ++ L+T HWFMFL+SLPYLY+NVRLY RRQHL+DVTEI++QL  EK LR++KL +LI+LL
Sbjct: 61  LIHLVTGHWFMFLVSLPYLYYNVRLYMRRQHLLDVTEIFNQLNREKQLRIFKLVHLIVLL 120

Query: 121 VLCIFWLLWTVG 132
              IFW++W++G
Sbjct: 121 TTSIFWMIWSIG 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125076|ref|XP_002329887.1| predicted protein [Populus trichocarpa] gi|222871124|gb|EEF08255.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M DL  W + F  LI+LL I+ +QLM L DLE DYINPYDS+++IN ++ PE+ T+G LC
Sbjct: 1   MGDLFVWLIAFFILIALLVIVIFQLMALADLEFDYINPYDSSSRINKVILPEYITEGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + FLIT HW M LL +PYLY+NVRLYT+RQHLVDVTEI++ L WEK  RL+KL YL++LL
Sbjct: 61  LFFLITGHWCMSLLCIPYLYYNVRLYTQRQHLVDVTEIFNMLNWEKKQRLFKLGYLVVLL 120

Query: 121 VLCIFWLLWTVGRDK 135
            L IFW+++T   D 
Sbjct: 121 FLSIFWMIFTALEDS 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460435|ref|XP_004147951.1| PREDICTED: probable protein cornichon homolog 2-like isoform 1 [Cucumis sativus] gi|449494293|ref|XP_004159504.1| PREDICTED: probable protein cornichon homolog 2-like isoform 1 [Cucumis sativus]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 101/136 (74%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           MEDL  W + F FLI+LL +L YQLM L DLE DYINP+DSA++IN ++ PEF   G LC
Sbjct: 1   MEDLYVWLVSFFFLIALLIVLVYQLMCLADLEFDYINPFDSASRINKVIMPEFIVMGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + +L+T HW M LLS PY+Y+NVRLY RRQHL+DVTEI++ L WEK  RL+KL YL++LL
Sbjct: 61  LFYLLTGHWGMSLLSGPYIYYNVRLYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVVLL 120

Query: 121 VLCIFWLLWTVGRDKH 136
            L IFW+++    D  
Sbjct: 121 FLSIFWMIYHALEDDE 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682747|ref|NP_172701.2| protein cornichon-4 [Arabidopsis thaliana] gi|75148636|sp|Q84W04.1|CNIH4_ARATH RecName: Full=Protein cornichon homolog 4 gi|28416577|gb|AAO42819.1| At1g12390 [Arabidopsis thaliana] gi|110743211|dbj|BAE99496.1| hypothetical protein [Arabidopsis thaliana] gi|332190753|gb|AEE28874.1| protein cornichon-4 [Arabidopsis thaliana]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 102/134 (76%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M D+  W + F FLI+L+GI+ YQL+ L DLE DYINPYDSA++IN +V PEF  QG LC
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + +L+T HWFM LL LPYLY+N  LY++RQHLVDVTEI++ L WEK  RL+KL Y+++ L
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 VLCIFWLLWTVGRD 134
            L IFW++++   D
Sbjct: 121 FLTIFWMIYSALDD 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470289|ref|XP_002266561.1| PREDICTED: protein cornichon homolog 4 [Vitis vinifera] gi|297742670|emb|CBI34819.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 98/134 (73%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M DL  W   F  LI+LL ++ YQLM L DLE DYINPYDSA++IN +V PEF TQG LC
Sbjct: 1   MGDLFAWIFSFFILIALLVLVVYQLMCLADLEFDYINPYDSASRINKVVLPEFITQGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + + +T HWFM LL  PYLY+NVRLY RRQHL+DVTEI++ L WEK  RL+KL YLI LL
Sbjct: 61  LFYSLTGHWFMSLLCGPYLYYNVRLYQRRQHLIDVTEIFNLLNWEKKQRLFKLGYLIFLL 120

Query: 121 VLCIFWLLWTVGRD 134
            L IFW++ +   D
Sbjct: 121 FLSIFWMILSALED 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844102|ref|XP_002889932.1| cornichon family protein [Arabidopsis lyrata subsp. lyrata] gi|297335774|gb|EFH66191.1| cornichon family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 102/134 (76%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M D+  W + F FLI+L+GI+ YQL+ L DLE DYINPYDSA++IN +V PEF  QG LC
Sbjct: 1   MGDIWAWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + +L+T HW M LL LPYLY+N +LY++RQHLVDVTEI++ L WEK  RL+KL Y+++ L
Sbjct: 61  VFYLLTGHWVMTLLCLPYLYYNFQLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 VLCIFWLLWTVGRD 134
            L IFW++++   D
Sbjct: 121 FLTIFWMIYSALDD 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459670|ref|XP_004147569.1| PREDICTED: protein cornichon homolog 4-like [Cucumis sativus] gi|449523575|ref|XP_004168799.1| PREDICTED: protein cornichon homolog 4-like [Cucumis sativus]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 103/134 (76%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M D+  W L F F+I+LL ++ +QLM L DLE DYINPYDS+++IN +V PEF TQG LC
Sbjct: 1   MADIYVWLLSFFFIIALLMLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           I +L++ HW M LL +P LY+N+R+YT+R+HLVDVTEI++QL WEK  RL+KL YL+ LL
Sbjct: 61  IFYLLSGHWVMSLLCMPCLYYNLRMYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120

Query: 121 VLCIFWLLWTVGRD 134
            L IFWL+++   D
Sbjct: 121 FLSIFWLIYSALED 134

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726946|ref|NP_001235864.1| uncharacterized protein LOC100306239 [Glycine max] gi|255627977|gb|ACU14333.1| unknown [Glycine max]

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 98/136 (72%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M ++L W   F+ +++LL IL YQL+ L DLE DYINPYDS +QIN +V PEF   G  C
Sbjct: 1   MAEVLYWISTFVLILTLLCILGYQLILLVDLEFDYINPYDSTSQINQVVLPEFIIHGIFC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
              LI  HWF+FL+SLP+LY+N+RLY +R+HL DVTEIY++L WEK  RL+K+ YL+++ 
Sbjct: 61  FTNLIAGHWFIFLISLPFLYYNLRLYIKREHLADVTEIYNKLNWEKKKRLFKVAYLVLVF 120

Query: 121 VLCIFWLLWTVGRDKH 136
             CI  L+WT+  D H
Sbjct: 121 AFCIVSLVWTLTEDVH 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828483|emb|CAN64319.1| hypothetical protein VITISV_027918 [Vitis vinifera]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 93/125 (74%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M DL  W   F  LI+LL ++ YQLM L DLE DYINPYDSA++IN +V PEF TQG LC
Sbjct: 1   MGDLFAWIFSFFILIALLVLVVYQLMCLADLEFDYINPYDSASRINKVVLPEFITQGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + + +T HWFM LL  PYLY+NVRLY RRQHL+DVTEI++ L WEK  RL+KL YLI LL
Sbjct: 61  LFYSLTGHWFMSLLCGPYLYYNVRLYQRRQHLIDVTEIFNLLNWEKKQRLFKLGYLIFLL 120

Query: 121 VLCIF 125
            L IF
Sbjct: 121 FLSIF 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071609|ref|XP_002303539.1| predicted protein [Populus trichocarpa] gi|222840971|gb|EEE78518.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 101/135 (74%)

Query: 1   MEDLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
           M DL  W + F  LISL+ I+ +QLM L DLE DYINPYDS+++IN ++ PE+ T+G LC
Sbjct: 1   MGDLFVWLISFFILISLIVIVIFQLMALADLEFDYINPYDSSSRINKVILPEYITEGVLC 60

Query: 61  ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILL 120
           + FL+T HW M LL +PYLY+N RLYTRRQHLVDVTEI++ L WEK  RL+KL YLI+LL
Sbjct: 61  LFFLVTGHWCMSLLCVPYLYYNARLYTRRQHLVDVTEIFNMLNWEKKQRLFKLGYLIVLL 120

Query: 121 VLCIFWLLWTVGRDK 135
            L IFW++ T   D 
Sbjct: 121 FLSIFWMILTALEDS 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2034660	137	AT1G12390 [Arabidopsis thalian	0.955	0.948	0.469	7.9e-30
TAIR|locus:2034655	129	AT1G12340 "AT1G12340" [Arabido	0.794	0.837	0.518	1.9e-28
TAIR|locus:2015514	137	AT1G62880 "AT1G62880" [Arabido	0.794	0.788	0.518	3.1e-28
TAIR|locus:2118101	135	AT4G12090 "AT4G12090" [Arabido	0.941	0.948	0.421	5.2e-26
TAIR|locus:2082199	146	AT3G12180 "AT3G12180" [Arabido	0.764	0.712	0.423	4.3e-22
SGD|S000003022	138	ERV14 "COPII-coated vesicle pr	0.573	0.565	0.432	7.9e-14
UNIPROTKB|G4MYQ8	138	MGG_08132 "Uncharacterized pro	0.610	0.601	0.392	1.5e-12
ASPGD|ASPL0000028082	138	AN5195 [Emericella nidulans (t	0.610	0.601	0.404	3.1e-12
POMBASE|SPAC30C2.05	137	erv14 "cornichon family protei	0.566	0.562	0.397	6.4e-12
SGD|S000000414	142	ERV15 "Protein involved in exp	0.580	0.556	0.375	1.3e-11

TAIR|locus:2034660 AT1G12390 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 61/130 (46%), Positives = 78/130 (60%)

Query:     1 MEDLLGWXXXXXXXXXXXXXXSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
             M D+  W               YQL+ L DLE DYINPYDSA++IN +V PEF  QG LC
Sbjct:     1 MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query:    61 ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHXXXXXXXXXXXXX 120
             + +L+T HWFM LL LPYLY+N  LY++RQHLVDVTEI++ L WEK              
Sbjct:    61 VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query:   121 XXXXFWLLWT 130
                 FW++++
Sbjct:   121 FLTIFWMIYS 130

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2034655 AT1G12340 "AT1G12340" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 56/108 (51%), Positives = 73/108 (67%)

Query:    23 YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
             + L+ L DLE DYINPYDSA++IN +V PEF  QG LC+ +L+T HWFM LL LPYLY+N
Sbjct:    15 FHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYN 74

Query:    83 VRLYTRRQHLVDVTEIYSQLTWEKHXXXXXXXXXXXXXXXXXFWLLWT 130
               LY++RQHLVDVTEI++ L WEK                  FW++++
Sbjct:    75 FHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYS 122

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

TAIR|locus:2015514 AT1G62880 "AT1G62880" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 56/108 (51%), Positives = 73/108 (67%)

Query:    23 YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
             YQL+ L DLE DYINPYDSA++IN +V PE   QG LC+ +L+T HWFM LL +PYLY+N
Sbjct:    23 YQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTGHWFMALLCVPYLYYN 82

Query:    83 VRLYTRRQHLVDVTEIYSQLTWEKHXXXXXXXXXXXXXXXXXFWLLWT 130
               LY+R+QHL+DVTEI++ L WEK                  FWL+++
Sbjct:    83 FHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFWLIYS 130

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

TAIR|locus:2118101 AT4G12090 "AT4G12090" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 54/128 (42%), Positives = 74/128 (57%)

Query:     1 MEDLLGWXXXXXXXXXXXXXXSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLC 60
             M DLL W               YQL  L DLE D INPYD +++IN +V PEF  QG LC
Sbjct:     1 MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query:    61 ILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHXXXXXXXXXXXXX 120
             + +++T HWFM +LSLP+L++N+RLY +R+HL DVTE+Y+   WE+              
Sbjct:    61 LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query:   121 XXXXFWLL 128
                 +WL+
Sbjct:   121 FITTYWLI 128

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

TAIR|locus:2082199 AT3G12180 "AT3G12180" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 44/104 (42%), Positives = 68/104 (65%)

Query:     3 DLLGWXXXXXXXXXXXXXXSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCIL 62
             DL  W               YQ++ LTDLE DY+NP++++ +IN LV PEF  QG+LC+L
Sbjct:     4 DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query:    63 FLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEK 106
             FL+T HW  FL+++P   ++  LY  R++L+DVTE++  +++EK
Sbjct:    64 FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEK 107

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

SGD|S000003022 ERV14 "COPII-coated vesicle protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 35/81 (43%), Positives = 55/81 (67%)

Query:    23 YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
             + ++Y  DLE DYINP +  +++N L+ PE    G L +LFL+  +WF+FLL+LP L +N
Sbjct:    23 FTILY-ADLEADYINPIELCSKVNKLITPEAALHGALSLLFLLNGYWFVFLLNLPVLAYN 81

Query:    83 V-RLYTRRQHLVDVTEIYSQL 102
             + ++Y + Q L+D TEI+  L
Sbjct:    82 LNKIYNKVQ-LLDATEIFRTL 101

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISM

GO:0030437 "ascospore formation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP;IPI

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0007120 "axial cellular bud site selection" evidence=IMP

UNIPROTKB|G4MYQ8 MGG_08132 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 33/84 (39%), Positives = 49/84 (58%)

Query:    23 YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
             + +MY +DLE DYINP D   ++N  + PE    G L  +FLI  +W   +L+LP L +N
Sbjct:    25 FTIMY-SDLECDYINPIDLCNRLNTYIIPEAAVHGFLTFIFLINGYWLPLILNLPLLGWN 83

Query:    83 VRLYTRRQHLVDVTEIYSQLTWEK 106
             ++      HL+D TEI+ +L   K
Sbjct:    84 IKKIVDNAHLLDATEIFRKLNVHK 107

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000028082 AN5195 [Emericella nidulans (taxid:162425)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 34/84 (40%), Positives = 47/84 (55%)

Query:    23 YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
             + +MY +DLE DYINP D   ++N  + PE      L  LF+I  +W    L+LP L FN
Sbjct:    25 FTIMY-SDLECDYINPIDLCNRLNAYIIPEAGVHAFLTFLFVINGYWLAIALNLPLLAFN 83

Query:    83 VRLYTRRQHLVDVTEIYSQLTWEK 106
              +     QHL+D TEI+ +L   K
Sbjct:    84 AKKIYDNQHLLDATEIFRKLNVHK 107

GO:0030437 "ascospore formation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0007120 "axial cellular bud site selection" evidence=IEA

GO:0030134 "ER to Golgi transport vesicle" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0035556 "intracellular signal transduction" evidence=IEA

POMBASE|SPAC30C2.05 erv14 "cornichon family protein Erv14 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query:    25 LMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVR 84
             +M+ +DLE DYINP D   ++N LV PE  +   + +L L+ + W +FL +LP L F+  
Sbjct:    28 IMF-SDLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLANLPLLVFHAN 86

Query:    85 LYTRRQHLVDVTEIYSQL 102
                 + H++D TEI+ QL
Sbjct:    87 QVIHKTHILDATEIFRQL 104

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016971 "flavin-linked sulfhydryl oxidase activity" evidence=ISS

GO:0030134 "ER to Golgi transport vesicle" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

SGD|S000000414 ERV15 "Protein involved in export of proteins from the endoplasmic reticulum" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 30/80 (37%), Positives = 48/80 (60%)

Query:    23 YQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82
             + ++Y  DLE DYIN  +   ++N L  PE   Q  +  LFL   +WF+FLL++P L +N
Sbjct:    26 FTILY-GDLEADYINSIELCKRVNRLSVPEAILQAFISALFLFNGYWFVFLLNVPVLAYN 84

Query:    83 VRLYTRRQHLVDVTEIYSQL 102
                  ++ HL+D T+I+ +L
Sbjct:    85 ASKVYKKTHLLDATDIFRKL 104

GO:0003674 "molecular_function" evidence=ND

GO:0007120 "axial cellular bud site selection" evidence=ISS

GO:0030134 "ER to Golgi transport vesicle" evidence=IGI

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IGI

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84W04	CNIH4_ARATH	No assigned EC number	0.5746	0.9852	0.9781	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam03311	128	pfam03311, Cornichon, Cornichon protein	2e-30
PLN00174	160	PLN00174, PLN00174, predicted protein; Provisional	9e-09

>gnl|CDD|217486 pfam03311, Cornichon, Cornichon protein

 Score =  105 bits (265), Expect = 2e-30
 Identities = 51/120 (42%), Positives = 76/120 (63%)

Query: 7   WFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLIT 66
           + L  +   +LL +  Y ++ L+DLE DYINP D  +++N LV PE+   G LC+LFL+T
Sbjct: 9   YILALLINAALLFLQVYFVIMLSDLEADYINPIDLCSRLNPLVLPEYILHGFLCLLFLLT 68

Query: 67  EHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 126
            HWF+FLL+LP L +NV LY +R HL+D TEI+  L+  K     KL + ++L    ++ 
Sbjct: 69  GHWFVFLLNLPLLAYNVYLYYKRTHLLDATEIFRTLSKHKRESFIKLAFYLLLFFYYLYR 128

Length = 128

>gnl|CDD|177769 PLN00174, PLN00174, predicted protein; Provisional

 Score = 50.5 bits (120), Expect = 9e-09
 Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 5   LGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFL 64
           +G    F+ +I  LG  +Y+L  L DL  D +NP +   ++N L  PE+     L I F+
Sbjct: 17  MGLVSTFM-VIICLGY-TYKL--LQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIAFV 72

Query: 65  ITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCI 124
           I   W +  L+ P++++N   +   +H +D  +I++ L+ E  +   K  + II+++  I
Sbjct: 73  IRGWWIVGFLNFPFIFYNFAQWYEGKHQLDSAQIFNVLSRELRVIKAKSAFFIIIVIYTI 132

Query: 125 F-WLLWT 130
           + W++W 
Sbjct: 133 WEWMIWV 139

Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG2729	137	consensus ER vesicle integral membrane protein inv	100.0
PF03311	128	Cornichon: Cornichon protein; InterPro: IPR003377	100.0
PLN00174	160	predicted protein; Provisional	100.0

>KOG2729 consensus ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-58  Score=340.33  Aligned_cols=132  Identities=40%  Similarity=0.794  Sum_probs=128.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHHHhhcCcchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032657            3 DLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN   82 (136)
Q Consensus         3 ~~~~wi~a~~~~~~ll~~~vy~~i~l~DLe~D~iNp~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~w~~~lln~P~l~y~   82 (136)
                      +.++|..+++..++++++++||+|+++|||+||+||+|+|||+|++|+||+++||++|++++++|||+++++|+|+++||
T Consensus         6 ~~~~~~~~~l~~~~li~~~iy~vI~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~KOGlfLl~g~W~~fllnlP~l~y~   85 (137)
T KOG2729|consen    6 AAFLYTLSLLVCAALIFLQIYFVICLADLETDYINPIDLCSRLNRLVLPEFILHGLLCLLFLLTGHWFMFLLNLPLLAYN   85 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            56677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032657           83 VRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGRD  134 (136)
Q Consensus        83 ~~~y~~~~~l~D~TeIf~~L~~~~k~~~iKl~fy~l~Ff~~ly~mi~~lv~~  134 (136)
                      +++|.+|+|++|||||||++++|||||++|+|||+++||+|+||||+|++++
T Consensus        86 ~~~y~~r~~l~D~TeI~n~L~~~~k~~~~KL~fyll~FF~yly~mI~slv~~  137 (137)
T KOG2729|consen   86 AWLYMKRPHLYDPTEIFNTLSSEKKERWIKLAFYLLSFFYYLYWMIYSLVSS  137 (137)
T ss_pred             HHHHHcCCcccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999975

>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling

Probab=100.00  E-value=4.8e-53  Score=311.80  Aligned_cols=126  Identities=44%  Similarity=0.853  Sum_probs=122.8

Q ss_pred             Ch-hH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHHHhhcCcchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032657            1 ME-DL-LGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPY   78 (136)
Q Consensus         1 m~-~~-~~wi~a~~~~~~ll~~~vy~~i~l~DLe~D~iNp~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~w~~~lln~P~   78 (136)
                      |+ +. ..|++|++++++++++++|+++++||||+||+||+|+|||+||+|+||+++|++++++++++|||+++++|+|+
T Consensus         1 m~~~~~~~~i~alll~~~ll~~~vy~ii~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~w~~~llnlPl   80 (128)
T PF03311_consen    1 MAFDFIVLWILALLLTAALLFIVVYFIICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFLCLLFLLTGHWFLFLLNLPL   80 (128)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 44 48999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032657           79 LYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW  126 (136)
Q Consensus        79 l~y~~~~y~~~~~l~D~TeIf~~L~~~~k~~~iKl~fy~l~Ff~~ly~  126 (136)
                      ++||+++|.+|+|++|||||||+|++|||||++|+|||+++||+|+||
T Consensus        81 ~~y~~~~~~~~~~l~D~T~If~~L~~~kk~~~iKl~~yll~ff~yly~  128 (128)
T PF03311_consen   81 LAYHIYRYFRRQHLYDPTEIFNQLKREKKESFIKLGFYLLLFFYYLYR  128 (128)
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999996

The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane

>PLN00174 predicted protein; Provisional

Probab=100.00  E-value=3.4e-49  Score=298.16  Aligned_cols=116  Identities=27%  Similarity=0.621  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHhhccccccCCHHHHHhhcCcchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCccch
Q 032657           16 SLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDV   95 (136)
Q Consensus        16 ~ll~~~vy~~i~l~DLe~D~iNp~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~w~~~lln~P~l~y~~~~y~~~~~l~D~   95 (136)
                      ....+..|....+||||+||+||+|+|+|+|++|+||+++|+++|++|+++|+|+++++|+|+++||++||.+|+|++||
T Consensus        24 ~~~~~~~~~~~~lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l~lLfLltG~W~~fLLNlPll~Yhv~~y~~r~hL~D~  103 (160)
T PLN00174         24 MVIICLGYTYKLLQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIAFVIRGWWIVGFLNFPFIFYNFAQWYEGKHQLDS  103 (160)
T ss_pred             HHHHHhcchHHHHHHhhhccCCHHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 032657           96 TEIYSQLTWEKHLRLYKLCYLIILLVLCIF-WLLWTV  131 (136)
Q Consensus        96 TeIf~~L~~~~k~~~iKl~fy~l~Ff~~ly-~mi~~l  131 (136)
                      |||||+|++|||+|++|+|||+++||+|+| |||++.
T Consensus       104 TeIfn~L~~~kKe~~iKLaFYLl~FF~~ly~~mI~~~  140 (160)
T PLN00174        104 AQIFNVLSRELRVIKAKSAFFIIIVIYTIWEWMIWVP  140 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999 999985

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00