Citrus Sinensis ID: 032659

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNAGPSKSGKSGKKKR
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccccccHHHHcccccccccccccHHHHHHHHHHccccEEEEcccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHcEEEcHHHHEccccccccccccccccEccccHHHHHHHHHHccccEEEEcccccccccHHccEEEEccEcccccEcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDAQTARIKKWVILYPVYinskktiaegrrisaskacenptcieiadccqylkiphaieidkayprdfmqRGRVRVMLkredgtfvnpaISSRKQLMLHVAELvprhpnrtkkqepastssnagpsksgksgkkkr
Flexible Loop (DISEMBL)
mdaqtarikkwvilypvyinskktiaegrRISASKACENPTCIEIADCCQYLKIPHAieidkayprdfMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPrhpnrtkkqepastssnagpsksgksgkkkr
Low Complexity Region (SEG)
MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTssnagpsksgksgkkkR
Disordered region (IsUnstruct)
******RIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVA***********************************
Disordered Region (DISOPRED)
***********VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAE**********************************
Disordered Region (DISEMBL)
MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRH*****************************
Disordered Region (DISPRO)
*****ARIKKWVILYPVYINSKKT*AEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHP****************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNAGPSKSGKSGKKKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q943Z6	145	Signal recognition partic	yes	no	0.816	0.765	0.756	1e-47
P49964	136	Signal recognition partic	yes	no	0.919	0.919	0.687	2e-47
Q9D7A6	144	Signal recognition partic	yes	no	0.764	0.722	0.490	6e-23
Q5RBR1	144	Signal recognition partic	yes	no	0.845	0.798	0.462	9e-23
P09132	144	Signal recognition partic	yes	no	0.845	0.798	0.462	9e-23
Q3ZBG7	144	Signal recognition partic	yes	no	0.845	0.798	0.453	2e-22
O14415	275	Signal recognition partic	N/A	no	0.860	0.425	0.319	2e-16
P41922	310	Signal recognition partic	yes	no	0.786	0.345	0.361	3e-16
O61749	160	Probable signal recogniti	yes	no	0.742	0.631	0.415	4e-16
Q6BM93	269	Signal recognition partic	yes	no	0.838	0.423	0.341	2e-15

>sp|Q943Z6|SRP19_ARATH Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=2 SV=1

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 97/111 (87%)

Query: 1   MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
           MD+ T  IKKWV++YPVYINSKKT+AEGRRIS SK+CENP CIEI+DCC++LK+P A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRT 111
           DKAYPRDFMQ GRVRV LKREDGT +NPAI+SRK LM  +AELVPRHP R 
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERV 111

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
Arabidopsis thaliana (taxid: 3702)

>sp|P49964|SRP19_ORYSJ Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 107/128 (83%), Gaps = 3/128 (2%)

Query: 1   MDAQTAR--IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAI 58
           MD    R  IKKW ++YPVY+NSKKT+AEGRRI++ KAC +PTC+EIADCC +LKIPHAI
Sbjct: 1   MDGGDLRSSIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAI 60

Query: 59  EIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPAS 118
           E+DKAYPRDF Q GRVRV LK++DG+ VNPAI ++KQLM+ +AELVP+H  RTKKQEPA+
Sbjct: 61  ELDKAYPRDFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAA 120

Query: 119 TSSNAGPS 126
            SS AG S
Sbjct: 121 -SSTAGTS 127

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9D7A6|SRP19_MOUSE Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=2 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 71/108 (65%), Gaps = 4/108 (3%)

Query: 10  KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
           +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 66  RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
           RD   RGRVRV LK+EDG+       SRK +ML+VAE++P+   RT+K
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQK 121

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Mus musculus (taxid: 10090)

>sp|Q5RBR1|SRP19_PONAB Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=2 SV=2

 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 73/119 (61%), Gaps = 4/119 (3%)

Query: 10  KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
           +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 66  RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNAG 124
           RD   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+K   A  S   G
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQG 132

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Pongo abelii (taxid: 9601)

>sp|P09132|SRP19_HUMAN Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3

 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 73/119 (61%), Gaps = 4/119 (3%)

Query: 10  KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
           +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 66  RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNAG 124
           RD   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+K   A  S   G
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQG 132

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Homo sapiens (taxid: 9606)

>sp|Q3ZBG7|SRP19_BOVIN Signal recognition particle 19 kDa protein OS=Bos taurus GN=SRP19 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 72/119 (60%), Gaps = 4/119 (3%)

Query: 10  KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
           +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCAAVGLNVFLEKNKMYSREWN 73

Query: 66  RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNAG 124
           RD   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+K      S   G
Sbjct: 74  RDLQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGGDQSLQQG 132

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Bos taurus (taxid: 9913)

>sp|O14415|SEC65_CANAX Signal recognition particle SEC65 subunit OS=Candida albicans GN=SEC65 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 2   DAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEID 61
           + +  +  ++ I+YP Y +  ++  +GRR+S  +A ENP    I+D C+ L +P  +E+D
Sbjct: 84  EEEKKQFDQFQIIYPCYFDINRSHKQGRRVSIDRAVENPLATTISDACRRLGLPVFLELD 143

Query: 62  KAYPRDFMQRGRVRVMLKR--EDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPAS 118
           K +P+DF   GRV+V+ K   ++G  +NP + +++ L   +AE +  HP   +   P S
Sbjct: 144 KTHPQDFGNPGRVKVLFKAVFDNGKLINPKLQTKRVLFNVIAEYLSEHPTTLESIGPKS 202

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. It must be involved intimately in the translocation of a wide variety of protein substrates.

Candida albicans (taxid: 5476)

>sp|P41922|SEC65_YARLI Signal recognition particle SEC65 subunit OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC65 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 4   QTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKA 63
           Q +  K W I+YPVY +  KT+ EGRR+    A ENP    IA+ C+ L +P   E  K 
Sbjct: 114 QESDFKDWQIVYPVYFDKNKTVGEGRRVPLELAVENPLGQTIAEACKMLTLPSIYEAHKT 173

Query: 64  YPRDFMQRGRVRVMLKREDGTFVNP-AISSRKQLMLHVAELVPRHPNR 110
           +P+D+   GRVRV LK +    + P ++ +++ L   +A+ +  HP +
Sbjct: 174 HPKDWANPGRVRVQLKDDPALGLPPHSVKNKRHLFRLIAQYMKEHPTK 221

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. It must be involved intimately in the translocation of a wide variety of protein substrates.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|O61749|SRP19_CAEEL Probable signal recognition particle 19 kDa protein OS=Caenorhabditis elegans GN=F37F2.2 PE=3 SV=3

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 5/106 (4%)

Query: 9   KKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD- 67
           K+W+++YP YI+ KKT  +GR+IS   A ENPT +EI D    +     +E  K YPRD 
Sbjct: 13  KRWIVIYPAYIDKKKTAKQGRKISQILAVENPTSVEIHDVLAAVGFNPLLERTKCYPRDG 72

Query: 68  ---FMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNR 110
              F  +GRVRV LK +DGT  +    +R ++   VAE++P+   R
Sbjct: 73  ERDFEVQGRVRVQLKNDDGTAKHEQ-KTRDEIFKMVAEMIPKLKTR 117

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Caenorhabditis elegans (taxid: 6239)

>sp|Q6BM93|SEC65_DEBHA Signal recognition particle SEC65 subunit OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SEC65 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 12/126 (9%)

Query: 6   ARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP 65
           A +KK+ I+YP Y +  ++  +GRR+S SKA  NP    I+D C++  +P  +E+DK +P
Sbjct: 82  AELKKFQIIYPCYFDKSRSHKDGRRVSESKAVSNPLAKTISDACRHYNLPVMLELDKTHP 141

Query: 66  RDFMQRGRVRVMLK--REDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNA 123
           +DF   GRVRV++K   ++G  V+    +++ ++  +A+ +  HP         +T ++ 
Sbjct: 142 QDFGNPGRVRVLIKDNNKNGMPVDSRFKTKRAVLNIIADYLKTHP---------TTLASI 192

Query: 124 GPSKSG 129
           GP KSG
Sbjct: 193 GP-KSG 197

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. It must be involved intimately in the translocation of a wide variety of protein substrates.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
224121158	136	predicted protein [Populus trichocarpa]	0.992	0.992	0.794	3e-57
449460339	135	PREDICTED: signal recognition particle 1	0.926	0.933	0.793	9e-56
388502370	138	unknown [Medicago truncatula]	1.0	0.985	0.724	3e-54
224133252	136	predicted protein [Populus trichocarpa]	0.904	0.904	0.813	7e-54
297736791	212	unnamed protein product [Vitis vinifera]	0.889	0.570	0.793	1e-53
358248038	137	uncharacterized protein LOC100801614 [Gl	0.992	0.985	0.746	2e-53
351725015	137	uncharacterized protein LOC100500027 [Gl	0.992	0.985	0.746	2e-53
225432142	135	PREDICTED: signal recognition particle 1	0.897	0.903	0.786	3e-53
449459788	134	PREDICTED: signal recognition particle 1	0.919	0.932	0.785	7e-53
255575754	136	signal recognition particle 19 kD protei	0.897	0.897	0.804	3e-52

>gi|224121158|ref|XP_002318513.1| predicted protein [Populus trichocarpa] gi|222859186|gb|EEE96733.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/136 (79%), Positives = 116/136 (85%), Gaps = 1/136 (0%)

Query: 1   MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
           MD     IKKWV+LYPVYINSKKTIAEGRRISA KACENPTC+EI DCC +LK+P AIEI
Sbjct: 2   MDGGVPNIKKWVVLYPVYINSKKTIAEGRRISAEKACENPTCVEIGDCCGHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTS 120
           DKAYPRDFMQ GRVRV+LKREDG+  NPAI SRKQLM HVAELVPRHP RTKKQEPAST 
Sbjct: 62  DKAYPRDFMQVGRVRVLLKREDGSLCNPAIPSRKQLMFHVAELVPRHPGRTKKQEPAST- 120

Query: 121 SNAGPSKSGKSGKKKR 136
           +N   SKSGK G+KKR
Sbjct: 121 ANVSTSKSGKGGRKKR 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460339|ref|XP_004147903.1| PREDICTED: signal recognition particle 19 kDa protein-like isoform 1 [Cucumis sativus] gi|449460341|ref|XP_004147904.1| PREDICTED: signal recognition particle 19 kDa protein-like isoform 2 [Cucumis sativus]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 112/126 (88%)

Query: 1   MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
           MD +   IK+WV+LYP+YINSKKTIAEGRRI  SKACENPTC+EI DCC +LK+P AIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTS 120
           DKAYPRDFMQRGRVRV+LK+EDGT  NPAI+SRKQLML +AELVPRHP RTKKQEPAS+S
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 SNAGPS 126
           S AGPS
Sbjct: 121 STAGPS 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502370|gb|AFK39251.1| unknown [Medicago truncatula]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 100/138 (72%), Positives = 119/138 (86%), Gaps = 2/138 (1%)

Query: 1   MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
           M+ +   IKKW++LYPVYINSKKT+AEGRRI  SK+CENPTC+EI DCC +LK+P AIE+
Sbjct: 1   MEGELPSIKKWIVLYPVYINSKKTVAEGRRIGISKSCENPTCVEIGDCCNFLKLPFAIEL 60

Query: 61  DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTS 120
           DKAYPRDFMQRGRVRV+LK EDGT +NP+I+SRKQLML VAE+VP+H  RTKKQE AST+
Sbjct: 61  DKAYPRDFMQRGRVRVLLKNEDGTLINPSIASRKQLMLRVAEMVPKHHGRTKKQETASTT 120

Query: 121 -SNAGPS-KSGKSGKKKR 136
            + AGPS KSGK GKK+R
Sbjct: 121 IATAGPSNKSGKGGKKRR 138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133252|ref|XP_002321521.1| predicted protein [Populus trichocarpa] gi|222868517|gb|EEF05648.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 100/123 (81%), Positives = 107/123 (86%)

Query: 1   MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
           MD     IKKWV+LYPVYINSKKTIAEGRRIS  KACENPTC+EI DCC +LK+P AIEI
Sbjct: 2   MDGGVPNIKKWVVLYPVYINSKKTIAEGRRISVEKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTS 120
           DKAYPRDFMQ GRVRV+LKREDG+  NPAI SRKQLMLHVAELVPRHP RTKKQEPASTS
Sbjct: 62  DKAYPRDFMQVGRVRVLLKREDGSLSNPAIPSRKQLMLHVAELVPRHPGRTKKQEPASTS 121

Query: 121 SNA 123
           + A
Sbjct: 122 NAA 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736791|emb|CBI25992.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/121 (79%), Positives = 107/121 (88%)

Query: 1   MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
           MD +   IKKW++ YPVYINSKKTIAEGRR+S SKACENPTC+EI DCC +LK+P AIEI
Sbjct: 78  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEI 137

Query: 61  DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTS 120
           DKAYPRDFMQRGRVRV+LK+EDGT  NPAISSRK+LM HVAELVPRHP R KKQEPASTS
Sbjct: 138 DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSRKELMRHVAELVPRHPGRVKKQEPASTS 197

Query: 121 S 121
           +
Sbjct: 198 N 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248038|ref|NP_001240053.1| uncharacterized protein LOC100801614 [Glycine max] gi|255638480|gb|ACU19549.1| unknown [Glycine max]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/138 (74%), Positives = 119/138 (86%), Gaps = 3/138 (2%)

Query: 1   MD-AQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIE 59
           MD ++   +KKW+++YPVYINSKKT+AEGRRI  +KACENPTC EI DCC YLK+P AIE
Sbjct: 1   MDTSELPNLKKWIVMYPVYINSKKTMAEGRRIGLAKACENPTCAEIGDCCSYLKLPFAIE 60

Query: 60  IDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPAST 119
           IDKAYPRDFMQRGRVRV+LK+EDGT  N AISSRKQLM+ VAE+VPRH  RTKKQ+PAST
Sbjct: 61  IDKAYPRDFMQRGRVRVLLKKEDGTLFNSAISSRKQLMVKVAEMVPRHHGRTKKQDPAST 120

Query: 120 SSNAGPS-KSGKSGKKKR 136
           S+ AGPS KSGK GKK+R
Sbjct: 121 ST-AGPSTKSGKGGKKRR 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725015|ref|NP_001235798.1| uncharacterized protein LOC100500027 [Glycine max] gi|255628607|gb|ACU14648.1| unknown [Glycine max]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/138 (74%), Positives = 118/138 (85%), Gaps = 3/138 (2%)

Query: 1   MD-AQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIE 59
           MD A+ + IKKW+++YPVYINSKKT+AEGRRI  +KACENPTC EI DCC YLK+P AIE
Sbjct: 1   MDGAELSNIKKWIVMYPVYINSKKTMAEGRRIGLAKACENPTCAEIGDCCSYLKLPFAIE 60

Query: 60  IDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPAST 119
           IDKAYPRDFMQRGRVRV+LK+EDGT  N  ISSRKQLM+ VAE+VPRH  RTKKQE +ST
Sbjct: 61  IDKAYPRDFMQRGRVRVLLKKEDGTLFNSTISSRKQLMVKVAEMVPRHHGRTKKQETSST 120

Query: 120 SSNAGPS-KSGKSGKKKR 136
           S+ AGPS KSGK GKK+R
Sbjct: 121 ST-AGPSTKSGKGGKKRR 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432142|ref|XP_002265249.1| PREDICTED: signal recognition particle 19 kDa protein [Vitis vinifera]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/122 (78%), Positives = 107/122 (87%)

Query: 1   MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
           MD +   IKKW++ YPVYINSKKTIAEGRR+S SKACENPTC+EI DCC +LK+P AIEI
Sbjct: 1   MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTS 120
           DKAYPRDFMQRGRVRV+LK+EDGT  NPAISSRK+LM HVAELVPRHP R KKQEPASTS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSRKELMRHVAELVPRHPGRVKKQEPASTS 120

Query: 121 SN 122
           + 
Sbjct: 121 NT 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459788|ref|XP_004147628.1| PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus] gi|449530907|ref|XP_004172433.1| PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/126 (78%), Positives = 108/126 (85%), Gaps = 1/126 (0%)

Query: 1   MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
           MD +   IK+WV+LYP+YINSKKTIAEGRRI  SKACENPTC EI DCC +LK+P AIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTS 120
           DKAYPRDFMQRGRVRV LK+EDG   NPAI+SRKQLML +AELVPRHP RTKKQEPAS S
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPAS-S 119

Query: 121 SNAGPS 126
           S AGPS
Sbjct: 120 STAGPS 125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575754|ref|XP_002528776.1| signal recognition particle 19 kD protein, putative [Ricinus communis] gi|223531779|gb|EEF33598.1| signal recognition particle 19 kD protein, putative [Ricinus communis]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/123 (80%), Positives = 106/123 (86%), Gaps = 1/123 (0%)

Query: 2   DAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEID 61
           D     IKKWV+LYPVYINSKKTIA+GRRI  SKACENPTC+EI DCC +LK+P AIEID
Sbjct: 3   DGSVPNIKKWVVLYPVYINSKKTIAQGRRICTSKACENPTCVEIGDCCSHLKLPFAIEID 62

Query: 62  KAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSS 121
           KAYPRDFMQ GRVRV+LKR DGT  NPAI +RKQLMLHVAELVPRHP RTKKQEPAST S
Sbjct: 63  KAYPRDFMQIGRVRVLLKRGDGTLYNPAIPTRKQLMLHVAELVPRHPGRTKKQEPAST-S 121

Query: 122 NAG 124
           NAG
Sbjct: 122 NAG 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2020895	145	AT1G48160 [Arabidopsis thalian	0.845	0.793	0.765	2.3e-46
MGI|MGI:1913634	144	Srp19 "signal recognition part	0.764	0.722	0.481	9e-22
RGD|1308437	144	Srp19 "signal recognition part	0.764	0.722	0.481	1.5e-21
UNIPROTKB|F1RLG4	144	SRP19 "Uncharacterized protein	0.764	0.722	0.481	1.9e-21
UNIPROTKB|Q3ZBG7	144	SRP19 "Signal recognition part	0.764	0.722	0.481	2.4e-21
UNIPROTKB|J9PAS6	144	SRP19 "Uncharacterized protein	0.764	0.722	0.481	2.4e-21
UNIPROTKB|P09132	144	SRP19 "Signal recognition part	0.764	0.722	0.481	2.4e-21
ZFIN|ZDB-GENE-040426-2657	141	srp19 "signal recognition part	0.764	0.737	0.467	6.3e-21
UNIPROTKB|F1NQ53	145	SRP19 "Uncharacterized protein	0.705	0.662	0.48	1.4e-18
WB|WBGene00018159	160	F37F2.2 [Caenorhabditis elegan	0.742	0.631	0.415	1.4e-16

TAIR|locus:2020895 AT1G48160 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 88/115 (76%), Positives = 101/115 (87%)

Query:     1 MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
             MD+ T  IKKWV++YPVYINSKKT+AEGRRIS SK+CENP CIEI+DCC++LK+P A+EI
Sbjct:     1 MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query:    61 DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQE 115
             DKAYPRDFMQ GRVRV LKREDGT +NPAI+SRK LM  +AELVPRHP R KKQE
Sbjct:    61 DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQE 115

GO:0005737 "cytoplasm" evidence=ISM

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0006605 "protein targeting" evidence=ISS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA;ISS

GO:0048500 "signal recognition particle" evidence=IEA

MGI|MGI:1913634 Srp19 "signal recognition particle 19" [Mus musculus (taxid:10090)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 52/108 (48%), Positives = 73/108 (67%)

Query:    10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM 69
             +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y R++ 
Sbjct:    14 RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query:    70 Q----RGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
             +    RGRVRV LK+EDG+       SRK +ML+VAE++P+   RT+K
Sbjct:    74 RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQK 121

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

GO:0048500 "signal recognition particle" evidence=IEA

RGD|1308437 Srp19 "signal recognition particle 19" [Rattus norvegicus (taxid:10116)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 52/108 (48%), Positives = 71/108 (65%)

Query:    10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPR--- 66
             +++ +YP Y+N+KKTIAEGRRI  +KA ENPT  EI D C  + +   +E +K Y R   
Sbjct:    14 RFICIYPAYLNNKKTIAEGRRIPINKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query:    67 -DFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
              D   RGRVRV LK+EDG+       SRK +ML+VAE++P+   RT+K
Sbjct:    74 RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQK 121

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA;ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEA;ISO

UNIPROTKB|F1RLG4 SRP19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 52/108 (48%), Positives = 70/108 (64%)

Query:    10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPR--- 66
             +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y R   
Sbjct:    14 RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query:    67 -DFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
              D   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+K
Sbjct:    74 RDLQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121

GO:0042493 "response to drug" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|Q3ZBG7 SRP19 "Signal recognition particle 19 kDa protein" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 52/108 (48%), Positives = 70/108 (64%)

Query:    10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPR--- 66
             +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y R   
Sbjct:    14 RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCAAVGLNVFLEKNKMYSREWN 73

Query:    67 -DFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
              D   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+K
Sbjct:    74 RDLQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121

GO:0042493 "response to drug" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|J9PAS6 SRP19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 52/108 (48%), Positives = 70/108 (64%)

Query:    10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPR--- 66
             +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y R   
Sbjct:    14 RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query:    67 -DFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
              D   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+K
Sbjct:    74 RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121

GO:0048500 "signal recognition particle" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|P09132 SRP19 "Signal recognition particle 19 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 52/108 (48%), Positives = 70/108 (64%)

Query:    10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPR--- 66
             +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y R   
Sbjct:    14 RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query:    67 -DFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
              D   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+K
Sbjct:    74 RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0008312 "7S RNA binding" evidence=IDA

GO:0006613 "cotranslational protein targeting to membrane" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-040426-2657 srp19 "signal recognition particle 19" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 51/109 (46%), Positives = 72/109 (66%)

Query:     9 KKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDF 68
             ++++ +YP YINSKKT+AEGRRI   KA ENPTC EI        +   +E +  YPR++
Sbjct:    12 ERFLCIYPAYINSKKTLAEGRRIPTDKAVENPTCAEIQGVLSAAGLNVHVE-NSMYPREW 70

Query:    69 MQ----RGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
              +    RGRVRV LK EDG+F     +SRK +M +VAE++P+  +RT+K
Sbjct:    71 NRDVQFRGRVRVQLKMEDGSFCQDKFTSRKDVMFYVAEMIPKLKSRTQK 119

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

UNIPROTKB|F1NQ53 SRP19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 48/100 (48%), Positives = 62/100 (62%)

Query:    18 YINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPR----DFMQRGR 73
             Y+N+KKTIAEGRRI   KA ENPT  EI D C  +     +E +K YPR    D   RGR
Sbjct:    23 YLNNKKTIAEGRRIPIDKAVENPTSTEIQDVCAAVGFNVLLEKNKMYPREWNRDVQYRGR 82

Query:    74 VRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
             VR+ LK++DG    P   +RK +ML+ AE +P+   RT+K
Sbjct:    83 VRIQLKQDDGNPCLPQFPTRKSVMLYAAETIPKLKTRTQK 122

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

WB|WBGene00018159 F37F2.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 44/106 (41%), Positives = 63/106 (59%)

Query:     9 KKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD- 67
             K+W+++YP YI+ KKT  +GR+IS   A ENPT +EI D    +     +E  K YPRD 
Sbjct:    13 KRWIVIYPAYIDKKKTAKQGRKISQILAVENPTSVEIHDVLAAVGFNPLLERTKCYPRDG 72

Query:    68 ---FMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNR 110
                F  +GRVRV LK +DGT  +    +R ++   VAE++P+   R
Sbjct:    73 ERDFEVQGRVRVQLKNDDGTAKHEQ-KTRDEIFKMVAEMIPKLKTR 117

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q943Z6	SRP19_ARATH	No assigned EC number	0.7567	0.8161	0.7655	yes	no
P49964	SRP19_ORYSJ	No assigned EC number	0.6875	0.9191	0.9191	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam01922	92	pfam01922, SRP19, SRP19 protein	4e-34
COG1400	93	COG1400, SEC65, Signal recognition particle 19 kDa	5e-08
PRK00754	95	PRK00754, PRK00754, signal recognition particle pr	6e-08

>gnl|CDD|216787 pfam01922, SRP19, SRP19 protein

 Score =  113 bits (286), Expect = 4e-34
 Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 7/98 (7%)

Query: 12  VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD-FMQ 70
           +++YP Y++SK++ +EGRR+    A ENPT  EIAD C+ L +P  +E +K YPRD +  
Sbjct: 1   IVIYPAYLDSKRSRSEGRRVPKELAVENPTAEEIADACRKLGLPVVVEPEKKYPRDWWEN 60

Query: 71  RGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHP 108
           RGRVRV LK +D       I ++K L+  +AE +    
Sbjct: 61  RGRVRVQLKDDD------KIGTKKSLLKKIAEKIKELR 92

The signal recognition particle (SRP) binds to the signal peptide of proteins as they are being translated. The binding of the SRP halts translation and the complex is then transported to the endoplasmic reticulum's cytoplasmic surface. The SRP then aids translocation of the protein through the ER membrane. The SRP is a ribonucleoprotein that is composed of a small RNA and several proteins. One of these proteins is the SRP19 protein (Sec65 in yeast). Length = 92

>gnl|CDD|224318 COG1400, SEC65, Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 9  KKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDF 68
             ++L+P Y +S  + +EGRR+    A ENP+  EIA+  + L +   +E DK YPR +
Sbjct: 1  MMRIVLWPAYFDSDLSRSEGRRVPKELAVENPSLEEIAEALRELGLKPKVERDKKYPRLW 60

Query: 69 MQ-RGRVRV 76
           +  GRV V
Sbjct: 61 WEISGRVIV 69

Length = 93

>gnl|CDD|179110 PRK00754, PRK00754, signal recognition particle protein Srp19; Provisional

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDF-MQ 70
          ++++P YI+S ++ +EGR IS   A + P   EI +  + L +   +E DKAYPR +   
Sbjct: 7  IVIWPAYIDSTRSRSEGRIISRKLAVKEPRLEEIIEAAEKLGLNPEVEPDKAYPRSWWEV 66

Query: 71 RGRVRV 76
           GRV V
Sbjct: 67 SGRVLV 72

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG3198	152	consensus Signal recognition particle, subunit Srp	100.0
PF01922	95	SRP19: SRP19 protein; InterPro: IPR002778 The sign	100.0
PRK00754	95	signal recognition particle protein Srp19; Provisi	100.0
PRK03745	100	signal recognition particle protein Srp19; Provisi	100.0
COG1400	93	SEC65 Signal recognition particle 19 kDa protein [	99.97

>KOG3198 consensus Signal recognition particle, subunit Srp19 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-45  Score=279.04  Aligned_cols=115  Identities=47%  Similarity=0.718  Sum_probs=109.3

Q ss_pred             ccccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCC
Q 032659            4 QTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDG   83 (136)
Q Consensus         4 ~~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg   83 (136)
                      |-.+.++|+||||+|||+++|++||||||+++||+||+..||++||+.|||+|.+|++|+|||||.++|||||+|+++||
T Consensus         8 ~~~~~~r~ivlYP~Y~d~krt~~EGRripke~aVeNP~a~eI~Dvl~~lgl~~~~E~~K~hPrD~~n~GRVRvqlk~edG   87 (152)
T KOG3198|consen    8 DLEDQKRWIVLYPAYIDKKRTRKEGRRIPKEKAVENPLAKEIADVLRALGLNCLLEPNKKHPRDFVNPGRVRVQLKNEDG   87 (152)
T ss_pred             ChhhccceEEEEEEEeccccchhhccccCHHHhhcCcchhHHHHHHHHhCCcccccccccCchhcCCCceEEEEeeccCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCHHHHHHHHHHHhhcCCCc-cCCCCCCC
Q 032659           84 TFVNPAISSRKQLMLHVAELVPRHPNR-TKKQEPAS  118 (136)
Q Consensus        84 ~~~~~~~~~K~~Ll~~Ia~~I~~~~~r-~~~~~~~~  118 (136)
                      ++++.+++++..||..+|++++++.+| .+.++++.
T Consensus        88 ~l~~~~~~sr~~~~~~~a~~ip~~~~R~~~~~~~a~  123 (152)
T KOG3198|consen   88 TLYVIAFISRKSLMLPIAEMIPELKTRQPQKTGEAV  123 (152)
T ss_pred             cEEeecchhHHHHHHHhhhhCcccccccccccCCcc
Confidence            999999999999999999999999999 45555544

>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=100.00  E-value=4.1e-41  Score=240.17  Aligned_cols=94  Identities=48%  Similarity=0.808  Sum_probs=84.9

Q ss_pred             EEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcC-cCCCceEEEEeecCCCCccCCCC
Q 032659           12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD-FMQRGRVRVMLKREDGTFVNPAI   90 (136)
Q Consensus        12 ~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrd-w~~~GRVrV~l~~~dg~~~~~~~   90 (136)
                      +||||+|||+++|+++|||||+++||+||+++||++||++|||++++|++|+|||| |+++|||+|+++++   ++||.+
T Consensus         1 ~vIyP~Y~Ds~~sr~~GRrv~k~~aV~~P~~~EI~~a~~~Lgl~~~~E~~K~yPr~~~~~~GRV~V~~~~~---~~~~~~   77 (95)
T PF01922_consen    1 IVIYPAYFDSKKSRSEGRRVPKELAVENPTLEEIADACKKLGLPCVVEPDKRYPRDWWENPGRVRVQLKND---PVNPEI   77 (95)
T ss_dssp             EEEEGGGGBTTSSTTTT--SSTTTSBSS--HHHHHHHHHHTTSEEEEETTECTTCGSTSCTTEEEEE-CST---BSSTTS
T ss_pred             CEEccchhcCCCChhhccccChhhcCCCCCHHHHHHHHHHcCCCEEEccccCcChhhcccCceEEEEeCCC---cccCCC
Confidence            69999999999999999999999999999999999999999999999999999999 55699999998776   999999


Q ss_pred             CCHHHHHHHHHHHhhcCC
Q 032659           91 SSRKQLMLHVAELVPRHP  108 (136)
Q Consensus        91 ~~K~~Ll~~Ia~~I~~~~  108 (136)
                      ++|.+||++||+.|+++|
T Consensus        78 ~~K~~Ll~~Ia~~i~~~r   95 (95)
T PF01922_consen   78 KSKKELLKKIAEKIKKIR   95 (95)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            999999999999999763

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....

>PRK00754 signal recognition particle protein Srp19; Provisional

Probab=100.00  E-value=2.4e-38  Score=226.50  Aligned_cols=91  Identities=31%  Similarity=0.495  Sum_probs=85.3

Q ss_pred             ccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcC-CCceEEEEeecCCCCcc
Q 032659            8 IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM-QRGRVRVMLKREDGTFV   86 (136)
Q Consensus         8 ~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~-~~GRVrV~l~~~dg~~~   86 (136)
                      ...++||||+|||+++|+++|||||+++||+||+++||++||++|||++++|++|+|||+|| ++|||+|+.        
T Consensus         3 ~~~r~vIyP~Y~d~~~tr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~e~~K~yPr~~~e~~GRv~V~~--------   74 (95)
T PRK00754          3 DKGRIVIWPAYIDSTRSRSEGRIISRKLAVKEPRLEEIIEAAEKLGLNPEVEPDKAYPRSWWEVSGRVLVDK--------   74 (95)
T ss_pred             CcCcEEEeeccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEeeCCCCCchHhcCCCEEEECC--------
Confidence            35679999999999999999999999999999999999999999999999999999999999 699999972        


Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCC
Q 032659           87 NPAISSRKQLMLHVAELVPRHPN  109 (136)
Q Consensus        87 ~~~~~~K~~Ll~~Ia~~I~~~~~  109 (136)
                         +.+|.+||+.||+.|++++.
T Consensus        75 ---~~~K~~ll~~Ia~~I~~~R~   94 (95)
T PRK00754         75 ---VGSKTNTLRMIAKEIKKLRG   94 (95)
T ss_pred             ---CCCHHHHHHHHHHHHHHHhc
Confidence               36899999999999998874

>PRK03745 signal recognition particle protein Srp19; Provisional

Probab=100.00  E-value=1.3e-34  Score=208.93  Aligned_cols=90  Identities=22%  Similarity=0.345  Sum_probs=82.8

Q ss_pred             CeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe-eEeccccCCcC-----cC-CCceEEEEeecCC
Q 032659           10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH-AIEIDKAYPRD-----FM-QRGRVRVMLKRED   82 (136)
Q Consensus        10 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~-~vE~~K~yPrd-----w~-~~GRVrV~l~~~d   82 (136)
                      .++||||+|||+++|++||||||+++||+||+++||++||+.|||++ ++|++|.|||+     || ..|||+|+- +  
T Consensus         2 ~~~vIyP~Y~D~~~sr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~~E~~K~yPr~~g~~~~~~~~Grv~V~~-~--   78 (100)
T PRK03745          2 GRFVVWPSELDSRLSRKYGRIVPKNLAVERPTLEEIVDAAEALGFKVIEVDREKLNPRLSGIDEELRTRGRIVIES-P--   78 (100)
T ss_pred             CcEEEeeccccCcCChhhcCccCHHHcccCCCHHHHHHHHHHcCCCcEeeccCCCCCCccCCccchhcCCEEEecC-C--
Confidence            48999999999999999999999999999999999999999999999 59999999998     45 499999972 2  


Q ss_pred             CCccCCCCCCHHHHHHHHHHHhhcCCCc
Q 032659           83 GTFVNPAISSRKQLMLHVAELVPRHPNR  110 (136)
Q Consensus        83 g~~~~~~~~~K~~Ll~~Ia~~I~~~~~r  110 (136)
                              .+|..||++||+.|.+++.+
T Consensus        79 --------~~K~~ll~~Ia~~ik~~R~~   98 (100)
T PRK03745         79 --------YGKSKSLKMIAQKIREFRKR   98 (100)
T ss_pred             --------CCHHHHHHHHHHHHHHHHhc
Confidence                    38999999999999998864

>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]

Probab=99.97  E-value=1.6e-31  Score=190.53  Aligned_cols=88  Identities=32%  Similarity=0.521  Sum_probs=82.3

Q ss_pred             CeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCC-CceEEEEeecCCCCccCC
Q 032659           10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ-RGRVRVMLKREDGTFVNP   88 (136)
Q Consensus        10 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~-~GRVrV~l~~~dg~~~~~   88 (136)
                      ..+||||+|||+++||++|||||+++||+||+++||++|+++|||+|.++++|.|||.||+ .|||.|+. +        
T Consensus         2 ~~~vlwp~YfDs~~srs~GRrvpk~laV~~P~~~ei~~a~~~LGl~~~v~~dk~yPr~~w~~~g~vive~-~--------   72 (93)
T COG1400           2 MRIVLWPAYFDSDLSRSEGRRVPKELAVENPSLEEIAEALRELGLKPKVERDKKYPRLWWEISGRVIVES-N--------   72 (93)
T ss_pred             CceEEeehhhcCccChhhccccchhhcccCCCHHHHHHHHHHcCCCeeechhhcCCCchhhhCceEEEec-C--------
Confidence            4689999999999999999999999999999999999999999999999899999999997 89999984 2        


Q ss_pred             CCCCHHHHHHHHHHHhhcCC
Q 032659           89 AISSRKQLMLHVAELVPRHP  108 (136)
Q Consensus        89 ~~~~K~~Ll~~Ia~~I~~~~  108 (136)
                        .+|.++|+.||+.|++++
T Consensus        73 --~~K~~~lk~ia~~lr~~r   90 (93)
T COG1400          73 --GKKSKLLKAIAAKLREKR   90 (93)
T ss_pred             --ccHhHHHHHHHHHHHHhh
Confidence              279999999999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
1mfq_B	108	Crystal Structure Analysis Of A Ternary S-Domain Co		2e-22
1jid_A	128	Human Srp19 In Complex With Helix 6 Of Human Srp Rn		2e-22
1l9a_A	87	Crystal Structure Of Srp19 In Complex With The S Do		7e-05

>pdb|1MFQ|B Chain B, Crystal Structure Analysis Of A Ternary S-Domain Complex Of Human Signal Recognition Particle Length = 108

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 4/107 (3%)
Query: 10  KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
           +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y     
Sbjct: 2   RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 61
Query: 66  RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTK 112
           RD   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+
Sbjct: 62  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 108

>pdb|1JID|A Chain A, Human Srp19 In Complex With Helix 6 Of Human Srp Rna Length = 128

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 4/107 (3%)
Query: 10  KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
           +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73
Query: 66  RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTK 112
           RD   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120

>pdb|1L9A|A Chain A, Crystal Structure Of Srp19 In Complex With The S Domain Of Signal Recognition Particle Rna Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ- 70
          +I++P YI+ KK+  EGR++    A E P+  +I    + L +   I  DK YPR   + 
Sbjct: 1  MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEI 60
Query: 71 RGRVRV 76
           GRV V
Sbjct: 61 AGRVEV 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1jid_A	128	Signal recognition particle 19 kDa protein; signal	7e-39
1kvn_A	104	SRP19; RNA binding protein; NMR {Archaeoglobus ful	3e-25
1lng_A	87	SRP19, signal recognition particle 19 kDa protein;	8e-25
3dlu_A	106	SRP19, signal recognition particle 19 kDa protein;	1e-23
3ktw_A	109	SRP19, signal recognition particle 19 kDa protein;	7e-08

>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B Length = 128

 Score =  126 bits (318), Expect = 7e-39
 Identities = 52/114 (45%), Positives = 71/114 (62%), Gaps = 4/114 (3%)

Query: 6   ARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP 65
           A   +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y 
Sbjct: 10  ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYS 69

Query: 66  ----RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQE 115
               RD   RGRVRV LK+EDG+       SRK +ML+ AE++P+   RT+ + 
Sbjct: 70  REWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQLEH 123

>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A Length = 104

 Score = 91.4 bits (227), Expect = 3e-25
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 10  KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM 69
           K  +++ V ++SKK+ AEGRRI    A  N    E+ +  + L +    E  K     + 
Sbjct: 2   KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWE 61

Query: 70  QRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTS 120
           + GRV V               ++ +LM+ +A  +     + ++Q+     
Sbjct: 62  EGGRVVV-----------EKRGTKTKLMIELARKIAEIREQKREQKKDKKK 101

>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A* Length = 87

 Score = 89.8 bits (223), Expect = 8e-25
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ- 70
          +I++P YI+ KK+  EGR++    A E P+  +I    + L +   I  DK YPR   + 
Sbjct: 1  MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEI 60

Query: 71 RGRVRVMLKREDGTFVN 87
           G V V  K      + 
Sbjct: 61 CGCVEVDYKGNKLQLLK 77

>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B Length = 106

 Score = 87.2 bits (216), Expect = 1e-23
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 12  VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKI-PHAIEIDKAYPRDFMQ 70
            +++P  ++S+ +   GR +  S A E+P   EI    + LK     +E DK  PR    
Sbjct: 4   FVVWPSELDSRLSRKYGRIVPRSIAVESPRVEEIVRAAEELKFKVIRVEEDKLNPRLSGI 63

Query: 71  RGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEP 116
              +R       G  V  +   + + +  +A+ +     R+     
Sbjct: 64  DEELRT-----FGMIVLESPYGKSKSLKLIAQKIREFRRRSAGTLV 104

>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus} Length = 109

 Score = 46.5 bits (110), Expect = 7e-08
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 9  KKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDF 68
          +  ++++P Y  S  T ++GRR++  +        E+    + L +   +  +K YPRD 
Sbjct: 16 ENRIVIWPSYFFSP-TRSKGRRLA--RIPYKIKTEELVSTLRELGLDPIVIENKKYPRDR 72

Query: 69 MQRGRVRV 76
               + V
Sbjct: 73 KINFLIAV 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
1jid_A	128	Signal recognition particle 19 kDa protein; signal	100.0
1kvn_A	104	SRP19; RNA binding protein; NMR {Archaeoglobus ful	100.0
1lng_A	87	SRP19, signal recognition particle 19 kDa protein;	100.0
3dlu_A	106	SRP19, signal recognition particle 19 kDa protein;	100.0
3ktw_A	109	SRP19, signal recognition particle 19 kDa protein;	100.0

>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B

Probab=100.00  E-value=4e-46  Score=277.89  Aligned_cols=110  Identities=46%  Similarity=0.745  Sum_probs=104.0

Q ss_pred             ccccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcC----CCceEEEEee
Q 032659            4 QTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM----QRGRVRVMLK   79 (136)
Q Consensus         4 ~~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~----~~GRVrV~l~   79 (136)
                      ..+|.++|+||||+|||+++|++||||||+++||+||+++||++||+.|||++++|++|.|||+|+    ++|||+|+|+
T Consensus         8 ~~~d~~r~~vIyP~Y~Ds~~tr~eGRRV~k~~aVenPt~~EI~~a~~~Lgl~~~vE~~K~yPr~w~~~~~~~GRVrV~lk   87 (128)
T 1jid_A            8 SPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLK   87 (128)
T ss_dssp             STTSGGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEEEETTCCCTTCCCCCGGGCCEEEECCB
T ss_pred             CCcCccceEEECcccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEecCCCCCccchhhcCCCCEEEEEEe
Confidence            368899999999999999999999999999999999999999999999999999999999999996    4899999999


Q ss_pred             cCCCCccCCCCCCHHHHHHHHHHHhhcCCCccCC
Q 032659           80 REDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK  113 (136)
Q Consensus        80 ~~dg~~~~~~~~~K~~Ll~~Ia~~I~~~~~r~~~  113 (136)
                      ++||+|+||+|++|.+||.+||++|+++++|+.+
T Consensus        88 ~~dG~~~n~~~~sK~~Ll~~IA~~I~~lr~r~~~  121 (128)
T 1jid_A           88 QEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQL  121 (128)
T ss_dssp             CTTSCBSCTTCSSHHHHHHHHHHHGGGCTTC---
T ss_pred             CCCCCccCCcCCCHHHHHHHHHHHHHHhhccCCc
Confidence            9999999999999999999999999999999865

>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A

Probab=100.00  E-value=9.7e-42  Score=246.37  Aligned_cols=91  Identities=29%  Similarity=0.471  Sum_probs=86.8

Q ss_pred             CeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcC-CCceEEEEeecCCCCccCC
Q 032659           10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM-QRGRVRVMLKREDGTFVNP   88 (136)
Q Consensus        10 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~-~~GRVrV~l~~~dg~~~~~   88 (136)
                      +|+||||+|||+++|++||||||+++||+||+++||++||+.|||++++| +|.|||||| ++|||+|++.         
T Consensus         2 ~~~vIyP~Y~Ds~~tr~eGRRv~k~~aV~nP~~~EI~~a~~~Lgl~~~vE-~K~yPr~w~~~~GRVrV~~~---------   71 (104)
T 1kvn_A            2 KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAE-EKKYPKSWWEEGGRVVVEKR---------   71 (104)
T ss_dssp             CCEEEETTTTCSSSCTTTTCCSCGGGCCSSCCHHHHHHHHHHHTSSEEEC-CCTTTCSSCSSCCEEEESCC---------
T ss_pred             CeEEEeeccccCCCChhhCCccCHHHhccCCCHHHHHHHHHHcCCCeEEe-cCCCCchhhcCCCEEEEEeC---------
Confidence            69999999999999999999999999999999999999999999999999 999999999 6899999962         


Q ss_pred             CCCCHHHHHHHHHHHhhcCCCccC
Q 032659           89 AISSRKQLMLHVAELVPRHPNRTK  112 (136)
Q Consensus        89 ~~~~K~~Ll~~Ia~~I~~~~~r~~  112 (136)
                        .+|.+||++||++|+++++|+.
T Consensus        72 --~~K~~ll~~Ia~~I~~~r~r~~   93 (104)
T 1kvn_A           72 --GTKTKLMIELARKIAEIREQKR   93 (104)
T ss_dssp             --SCSHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHHhhcccc
Confidence              4799999999999999999884

>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*

Probab=100.00  E-value=7.8e-39  Score=224.72  Aligned_cols=85  Identities=31%  Similarity=0.522  Sum_probs=80.7

Q ss_pred             EEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCC-ceEEEEeecCCCCccCCCC
Q 032659           12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQR-GRVRVMLKREDGTFVNPAI   90 (136)
Q Consensus        12 ~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~-GRVrV~l~~~dg~~~~~~~   90 (136)
                      +||||+|||+++|++||||||+++||+||+++||++||++|||++++|++|+||||||+. |||+|++++          
T Consensus         1 ivIyP~Y~ds~~tr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~E~~K~yPr~w~~~~GRVrV~~~~----------   70 (87)
T 1lng_A            1 MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKG----------   70 (87)
T ss_dssp             CEECGGGTBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEEETTCCCGGGTTSCCCEEECCCCS----------
T ss_pred             CEEecccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEccCCCCCcccccCCceEEEEeCC----------
Confidence            589999999999999999999999999999999999999999999999999999999986 999999743          


Q ss_pred             CCHHHHHHHHHHHhhcC
Q 032659           91 SSRKQLMLHVAELVPRH  107 (136)
Q Consensus        91 ~~K~~Ll~~Ia~~I~~~  107 (136)
                       +|.+||++||+.|+++
T Consensus        71 -~K~~ll~~Ia~~i~~~   86 (87)
T 1lng_A           71 -NKLQLLKEICKIIKGK   86 (87)
T ss_dssp             -CHHHHHHHHHHHHTTC
T ss_pred             -CHHHHHHHHHHHHHhc
Confidence             5999999999999875

>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B

Probab=100.00  E-value=2.7e-38  Score=229.09  Aligned_cols=94  Identities=21%  Similarity=0.276  Sum_probs=86.5

Q ss_pred             CeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe-eEeccccCCcC-----cC-CCceEEEEeecCC
Q 032659           10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH-AIEIDKAYPRD-----FM-QRGRVRVMLKRED   82 (136)
Q Consensus        10 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~-~vE~~K~yPrd-----w~-~~GRVrV~l~~~d   82 (136)
                      ..+||||+|||+++|++||||||+++||+||+++||++||++|||++ ++|++|.||||     || ++|||+|++ +  
T Consensus         2 ~~ivIyP~Y~Ds~~sr~eGRRV~k~~aV~nPt~~EI~~a~~~lgl~~~~vE~~K~yPr~~~~~~~~~~~GRVrV~~-~--   78 (106)
T 3dlu_A            2 GRFVVWPSELDSRLSRKYGRIVPRSIAVESPRVEEIVRAAEELKFKVIRVEEDKLNPRLSGIDEELRTFGMIVLES-P--   78 (106)
T ss_dssp             CEEEECGGGGBTTSCGGGTCCSCTTTSBSSCCHHHHHHHHHHTTCEEEEEEEEEECC-------CCEEEEEEEEEC-S--
T ss_pred             CcEEEeeccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCceEecCCCCCCCcccccccccCCcEEEEec-C--
Confidence            47899999999999999999999999999999999999999999999 99999999999     98 699999995 2  


Q ss_pred             CCccCCCCCCHHHHHHHHHHHhhcCCCccCCC
Q 032659           83 GTFVNPAISSRKQLMLHVAELVPRHPNRTKKQ  114 (136)
Q Consensus        83 g~~~~~~~~~K~~Ll~~Ia~~I~~~~~r~~~~  114 (136)
                              .+|.+||++||++|+++++|+.++
T Consensus        79 --------~~K~~ll~~Ia~~I~~lr~r~~~~  102 (106)
T 3dlu_A           79 --------YGKSKSLKLIAQKIREFRRRSAGT  102 (106)
T ss_dssp             --------SCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             --------CCHHHHHHHHHHHHHHHhCCCCCC
Confidence                    589999999999999999988654

>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.9e-37  Score=224.55  Aligned_cols=93  Identities=17%  Similarity=0.208  Sum_probs=83.4

Q ss_pred             ccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCc
Q 032659            6 ARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTF   85 (136)
Q Consensus         6 ~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~   85 (136)
                      --...|+||||+|||+ +|+++|||||++  |+||+++||++||++|||++++|++|+||||||++|||+|++ +     
T Consensus        13 ~~~~~~ivIyP~Y~Ds-~sr~eGRRVpk~--V~nP~~~EI~~a~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~~-~-----   83 (109)
T 3ktw_A           13 LKEENRIVIWPSYFFS-PTRSKGRRLARI--PYKIKTEELVSTLRELGLDPIVIENKKYPRDRKINFLIAVKK-V-----   83 (109)
T ss_dssp             GGGGTEEEECTHHHHC-SSGGGTCCSSCC--SSCCCHHHHHHHHHHTTCCCEEECSCCCSSCTTCCCEEEEEC-S-----
T ss_pred             HHhCCeEEEeecccCC-cchhcCCccccc--CCCCCHHHHHHHHHHcCCCeEEccCCCCCcccCCCCEEEEec-C-----
Confidence            3456899999999999 999999999999  999999999999999999999999999999999999999995 2     


Q ss_pred             cCCCCCCHHHHHHHHHHHhhcCCCccC
Q 032659           86 VNPAISSRKQLMLHVAELVPRHPNRTK  112 (136)
Q Consensus        86 ~~~~~~~K~~Ll~~Ia~~I~~~~~r~~  112 (136)
                           .+|.+||++||+.|++++.++.
T Consensus        84 -----~sK~~Llk~IA~~I~~~R~~~~  105 (109)
T 3ktw_A           84 -----KSKNYTLKIIHNALMGTRQTNP  105 (109)
T ss_dssp             -----SSHHHHHHHHHHHHCCC-----
T ss_pred             -----CCHHHHHHHHHHHHHHhhccCC
Confidence                 4899999999999999986653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1jida_	114	d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId:	7e-40
d1lnga_	87	d.201.1.1 (A:) SRP19 {Archaeon Methanococcus janna	2e-25
d1kvva_	104	d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgi	2e-24

>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (321), Expect = 7e-40
 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 9   KKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDF 68
            +++ +YP Y+N+KKTIAEGRRI  SKA ENPT  EI D C  + +   +E +K Y R++
Sbjct: 9   DRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREW 68

Query: 69  ----MQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNR 110
                 RGRVRV LK+EDG+       SRK +ML+ AE++P+   R
Sbjct: 69  NRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR 114

>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 90.1 bits (224), Expect = 2e-25
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 12  VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD-FMQ 70
           +I++P YI+ KK+  EGR++    A E P+  +I    + L +   I  DK YPR  +  
Sbjct: 1   MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEI 60

Query: 71  RGRVRVMLKREDGTFVNPAISSRKQLMLHVAELV 104
            G V V  K            ++ QL+  + +++
Sbjct: 61  CGCVEVDYKG-----------NKLQLLKEICKII 83

>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 88.3 bits (219), Expect = 2e-24
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 10  KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM 69
           K  +++ V ++SKK+ AEGRRI    A  N    E+ +  + L +    E +K YP+ + 
Sbjct: 2   KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAE-EKKYPKSWW 60

Query: 70  Q-RGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPAS 118
           +  GRV V               ++ +LM+ +A  +     + ++Q+   
Sbjct: 61  EEGGRVVV-----------EKRGTKTKLMIELARKIAEIREQKREQKKDK 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1jida_	114	SRP19 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lnga_	87	SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2	100.0
d1kvva_	104	SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 223	100.0

>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-46  Score=271.98  Aligned_cols=108  Identities=46%  Similarity=0.751  Sum_probs=104.2

Q ss_pred             cccccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcC----CCceEEEEe
Q 032659            3 AQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM----QRGRVRVML   78 (136)
Q Consensus         3 ~~~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~----~~GRVrV~l   78 (136)
                      .+.+|.++|+||||+|||+++|++||||||++.||+||+++||++||++|||++++|++|+|||+|+    ..|||+|+|
T Consensus         3 ~~~sd~~rw~iIyP~Y~Ds~~tr~eGRRv~k~~aV~~P~~~EI~~a~~~lgl~~~~E~~K~~Pr~~~~~~~~~GRVrV~l   82 (114)
T d1jida_           3 RSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQL   82 (114)
T ss_dssp             CSTTSGGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEEEETTCCCTTCCCCCGGGCCEEEECC
T ss_pred             CCccCcccCEEECCccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCEEEecCCCCCcccccccccCceEEEEE
Confidence            4578999999999999999999999999999999999999999999999999999999999999985    479999999


Q ss_pred             ecCCCCccCCCCCCHHHHHHHHHHHhhcCCCc
Q 032659           79 KREDGTFVNPAISSRKQLMLHVAELVPRHPNR  110 (136)
Q Consensus        79 ~~~dg~~~~~~~~~K~~Ll~~Ia~~I~~~~~r  110 (136)
                      +++||+++|+.|++|.+||.+||++|+++++|
T Consensus        83 k~~~g~~~~~~~~tK~~Ll~~Ia~~I~klk~R  114 (114)
T d1jida_          83 KQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR  114 (114)
T ss_dssp             BCTTSCBSCTTCSSHHHHHHHHHHHGGGCTTC
T ss_pred             eCCCCCccCCCCCCHHHHHHHHHHHHHHccCC
Confidence            99999999999999999999999999999986

>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=7.3e-38  Score=218.04  Aligned_cols=84  Identities=31%  Similarity=0.513  Sum_probs=79.7

Q ss_pred             EEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcC-CCceEEEEeecCCCCccCCCC
Q 032659           12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM-QRGRVRVMLKREDGTFVNPAI   90 (136)
Q Consensus        12 ~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~-~~GRVrV~l~~~dg~~~~~~~   90 (136)
                      +||||+|||+++|+++|||||++.||+||+++||++||++|||++++|++|+|||+|| ++|||+|++++          
T Consensus         1 ivIyP~Y~Ds~~sr~eGRRv~k~~aV~~P~~~eI~~a~~~lgl~~~~e~~K~yPr~~~~~~Grv~V~~~~----------   70 (87)
T d1lnga_           1 MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKG----------   70 (87)
T ss_dssp             CEECGGGTBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEEETTCCCGGGTTSCCCEEECCCCS----------
T ss_pred             CEEcchhhcCCCChhhcCccCHHHHccCCCHHHHHHHHHHcCCCeEEeeCCCCCchHhhCCCEEEEEecC----------
Confidence            5899999999999999999999999999999999999999999999999999999988 58999999754          


Q ss_pred             CCHHHHHHHHHHHhhc
Q 032659           91 SSRKQLMLHVAELVPR  106 (136)
Q Consensus        91 ~~K~~Ll~~Ia~~I~~  106 (136)
                       +|.+||+.||+.|+.
T Consensus        71 -~K~~llk~Ia~~ik~   85 (87)
T d1lnga_          71 -NKLQLLKEICKIIKG   85 (87)
T ss_dssp             -CHHHHHHHHHHHHTT
T ss_pred             -CHHHHHHHHHHHHhc
Confidence             799999999999975

>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=8.2e-38  Score=223.93  Aligned_cols=92  Identities=28%  Similarity=0.452  Sum_probs=86.1

Q ss_pred             CeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCC-CceEEEEeecCCCCccCC
Q 032659           10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ-RGRVRVMLKREDGTFVNP   88 (136)
Q Consensus        10 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~-~GRVrV~l~~~dg~~~~~   88 (136)
                      .|+||||+|||+++|+++|||||++.||+||+++||++||+.|||++++| +|+||||||. .|||+|+.          
T Consensus         2 k~~vIyP~Y~Ds~~sr~eGRRv~k~~aV~~P~~~eI~~a~~~lgl~~~~e-~K~yPr~~~~~~Grv~V~~----------   70 (104)
T d1kvva_           2 KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAE-EKKYPKSWWEEGGRVVVEK----------   70 (104)
T ss_dssp             CCEEEETTTTCTTSCTTTCCCSCTTTCCSSCCHHHHHHHHHHHTSSEEEE-CCSCCSCSSCCCCEEEESC----------
T ss_pred             CcEEEechhhcCCCChhhcCccCHHHhcCCCCHHHHHHHHHHcCCCceec-CCCCCcchhhCCCEEEEcC----------
Confidence            47999999999999999999999999999999999999999999999999 7999999995 89999973          


Q ss_pred             CCCCHHHHHHHHHHHhhcCCCccCC
Q 032659           89 AISSRKQLMLHVAELVPRHPNRTKK  113 (136)
Q Consensus        89 ~~~~K~~Ll~~Ia~~I~~~~~r~~~  113 (136)
                       +++|.+||+.||+.|+++++++..
T Consensus        71 -~~~K~~ll~~Ia~~i~~~r~~~~~   94 (104)
T d1kvva_          71 -RGTKTKLMIELARKIAEIREQKRE   94 (104)
T ss_dssp             -CSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcccc
Confidence             358999999999999999988744