Citrus Sinensis ID: 032663

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESSTGTQLGSMQELVDFYTC
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEccccccHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEcHHHcccHHHHHHHHHHcccccccEEEEccEHHHHHHHHHHHHcccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
makvgkltKLKSAMkklpsfprlsrstsincslmftsaaadsdhhrkivngdnnvnakELHAVYVGKSRRQYYLTSDVICHPLFQELIersggfddegEVVVACEVVLFEHLLWMLesstgtqlgsmQELVDFYTC
Flexible Loop (DISEMBL)
makvgkltklksamkklpsfprlsrstsINCSLMFTSAAADSDHHRKIvngdnnvnakELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLEsstgtqlgsmqELVDFYTC
Low Complexity Region (SEG)
MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESSTGTQLGSMQELVDFYTC
Disordered region (IsUnstruct)
*****************************NCSLMFT*********RKIVNGDNNVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESSTGTQL*****LVDF***
Disordered Region (DISOPRED)
********KLKSAMK********************************************LHAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWM**************LVDFYTC
Disordered Region (DISEMBL)
MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESSTGTQLGSMQELVDFYTC
Disordered Region (DISPRO)
*AKVGKLTKLKSAMKKLPSFP**********************************NAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESSTGTQLGSMQELVDFYTC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESSTGTQLGSMQELVDFYTC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
255576561	126	conserved hypothetical protein [Ricinus	0.919	0.992	0.627	9e-39
224074081	126	SAUR family protein [Populus trichocarpa	0.897	0.968	0.628	1e-36
255576563	124	conserved hypothetical protein [Ricinus	0.904	0.991	0.598	8e-36
449447940	125	PREDICTED: uncharacterized protein LOC10	0.919	1.0	0.544	9e-34
388492086	122	unknown [Lotus japonicus]	0.882	0.983	0.580	1e-31
18410081	119	SAUR-like auxin-responsive protein famil	0.852	0.974	0.547	9e-29
297841985	119	hypothetical protein ARALYDRAFT_895094 [	0.852	0.974	0.547	1e-28
378760812	118	small auxin up RNA protein [Sinapis alba	0.860	0.991	0.540	2e-28
110743715	119	hypothetical protein [Arabidopsis thalia	0.852	0.974	0.540	7e-28
312282583	118	unnamed protein product [Thellungiella h	0.852	0.983	0.536	1e-27

>gi|255576561|ref|XP_002529171.1| conserved hypothetical protein [Ricinus communis] gi|223531349|gb|EEF33185.1| conserved hypothetical protein [Ricinus communis]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 107/137 (78%), Gaps = 12/137 (8%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           MAK+GKLTKLKSA+K+ PS  +L+R+ S        + AA ++   KI+ G ++ +  +L
Sbjct: 1   MAKIGKLTKLKSAIKRWPSLTKLARTNS--------TIAATNESEDKILKGIDDDD--QL 50

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESST 120
           HAVYVGKSRR+Y L+SD I HPLFQELIERSGGFD +GEVVV+CEVVLFEHLLWMLES  
Sbjct: 51  HAVYVGKSRRRYLLSSDTIYHPLFQELIERSGGFDHDGEVVVSCEVVLFEHLLWMLESG- 109

Query: 121 GTQLGSMQELVDFY-TC 136
           G+QLGSM+EL +FY TC
Sbjct: 110 GSQLGSMEELAEFYHTC 126

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074081|ref|XP_002304244.1| SAUR family protein [Populus trichocarpa] gi|222841676|gb|EEE79223.1| SAUR family protein [Populus trichocarpa]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 104/140 (74%), Gaps = 18/140 (12%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           MAK  KLTKLKSA+K+LPSF ++ R+ S       + AAAD+DH    ++G     +KEL
Sbjct: 1   MAKTSKLTKLKSAIKRLPSFTKIVRTNS-------SIAAADNDH----IDGKI---SKEL 46

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSG-GFDDEGE--VVVACEVVLFEHLLWMLE 117
           HAVYVGKSRR+Y L+SDVICHPLFQ LI+RSG GF DE    VVVACEVVLFEHLLWM+E
Sbjct: 47  HAVYVGKSRRRYLLSSDVICHPLFQGLIDRSGAGFGDEDNQAVVVACEVVLFEHLLWMIE 106

Query: 118 SSTGTQLGSMQELVDF-YTC 136
           S    QLGSM+EL +F YTC
Sbjct: 107 SGGSDQLGSMEELAEFYYTC 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576563|ref|XP_002529172.1| conserved hypothetical protein [Ricinus communis] gi|223531350|gb|EEF33186.1| conserved hypothetical protein [Ricinus communis]

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 101/137 (73%), Gaps = 14/137 (10%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           M K+GKLTKLKSA+K+ PSF + +R+ S       T AA++    +   + D+     +L
Sbjct: 1   MTKIGKLTKLKSAIKRWPSFTKPARTNS-------TIAASNESEDKNSKDPDH-----QL 48

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESST 120
           HAVYVGKSRR+Y L+S  I HPLFQELIERSGGFD +GEV V+CEVVLFEHLLWMLES  
Sbjct: 49  HAVYVGKSRRRYLLSSGTIYHPLFQELIERSGGFDHDGEVAVSCEVVLFEHLLWMLESG- 107

Query: 121 GTQLGSMQELVDF-YTC 136
           G+QLGSM+EL +F YTC
Sbjct: 108 GSQLGSMEELAEFYYTC 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447940|ref|XP_004141724.1| PREDICTED: uncharacterized protein LOC101209445 [Cucumis sativus] gi|449480462|ref|XP_004155900.1| PREDICTED: uncharacterized LOC101209445 [Cucumis sativus]

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 97/136 (71%), Gaps = 11/136 (8%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           M K G LTKLKSA+K+ PS  +L RS+S       +  A          N   N+N+KEL
Sbjct: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGA----------NVGENINSKEL 50

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESST 120
             VYVGKSRR Y+++ DV+ HPLFQEL+++S  FD++GE+VV+CEVV+FEHLLWMLE++ 
Sbjct: 51  RTVYVGKSRRPYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENA- 109

Query: 121 GTQLGSMQELVDFYTC 136
            TQLGS +ELV+FYTC
Sbjct: 110 ATQLGSTEELVEFYTC 125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492086|gb|AFK34109.1| unknown [Lotus japonicus]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 97/136 (71%), Gaps = 16/136 (11%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           MAK+GKLTKLKSA+K+ PS  +LSRS S   S     AA+  +  ++           +L
Sbjct: 1   MAKLGKLTKLKSAIKRWPSLTKLSRSNSCVSSNKEGGAASSKEQEQE-----------QL 49

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWMLESST 120
           HAVYVGKSRR+Y + SDVI HPLFQEL++RS    DE E+VV+CEVVLFEHLLWMLES+ 
Sbjct: 50  HAVYVGKSRRRYLVNSDVIRHPLFQELVDRSC---DE-EIVVSCEVVLFEHLLWMLESAE 105

Query: 121 GTQLGSMQELVDFYTC 136
            +QLGSM ELV+FY C
Sbjct: 106 -SQLGSMDELVEFYNC 120

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410081|ref|NP_565042.1| SAUR-like auxin-responsive protein family [Arabidopsis thaliana] gi|12325266|gb|AAG52573.1|AC016529_4 hypothetical protein; 47720-48079 [Arabidopsis thaliana] gi|21618190|gb|AAM67240.1| unknown [Arabidopsis thaliana] gi|88011102|gb|ABD38903.1| At1g72430 [Arabidopsis thaliana] gi|332197203|gb|AEE35324.1| SAUR-like auxin-responsive protein family [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 75/137 (54%), Positives = 93/137 (67%), Gaps = 21/137 (15%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           MAKVGKLTKLKSAMKK PSF +    +        TS+AA SD     ++ DNN     L
Sbjct: 1   MAKVGKLTKLKSAMKKWPSFAKNHHHS--------TSSAAVSDE----LSEDNN-----L 43

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSG--GFDDEGEVVVACEVVLFEHLLWMLES 118
           H VYVG++RR Y L  D+I HPLFQEL++RS     + + E+VVACEVVLFEHLLWML+S
Sbjct: 44  HVVYVGQTRRPYMLRPDIISHPLFQELVDRSSSRSIEQDREIVVACEVVLFEHLLWMLKS 103

Query: 119 STGTQLGSMQELVDFYT 135
             G + GS++EL +FYT
Sbjct: 104 --GQEGGSVEELAEFYT 118

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841985|ref|XP_002888874.1| hypothetical protein ARALYDRAFT_895094 [Arabidopsis lyrata subsp. lyrata] gi|297334715|gb|EFH65133.1| hypothetical protein ARALYDRAFT_895094 [Arabidopsis lyrata subsp. lyrata]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/137 (54%), Positives = 93/137 (67%), Gaps = 21/137 (15%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           MAKVGKLTKLKSAMKK PSF +    +        TS+AA SD     ++ DNN     L
Sbjct: 1   MAKVGKLTKLKSAMKKWPSFAKNHHHS--------TSSAAVSDE----LSEDNN-----L 43

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSG--GFDDEGEVVVACEVVLFEHLLWMLES 118
           H VYVG++RR Y L  D+I HPLFQEL++RS     + + E+VVACEVVLFEHLLWML+S
Sbjct: 44  HVVYVGQTRRPYMLRPDIISHPLFQELVDRSSSRSVEQDREIVVACEVVLFEHLLWMLKS 103

Query: 119 STGTQLGSMQELVDFYT 135
             G + GS++EL +FYT
Sbjct: 104 --GQEGGSVEELAEFYT 118

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|378760812|gb|AFC38438.1| small auxin up RNA protein [Sinapis alba]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 92/137 (67%), Gaps = 20/137 (14%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           MAKVGKLTKLKSA+KK PSF +       N     +SAA   +     ++ DNN     L
Sbjct: 1   MAKVGKLTKLKSAIKKWPSFAK-------NHHHSSSSAAVSDE-----LSEDNN-----L 43

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSG-GFDDEGEVVVACEVVLFEHLLWMLESS 119
           H VYVG++RR Y L  D+I HPLFQEL++RS    + E E+VVACEVVLFEHLLWML+S 
Sbjct: 44  HVVYVGQTRRPYMLRPDIISHPLFQELVDRSSKSAEQEREIVVACEVVLFEHLLWMLKS- 102

Query: 120 TGTQLGSMQELVDFYTC 136
            G + GS++EL +FYTC
Sbjct: 103 -GQEGGSVEELAEFYTC 118

Source: Sinapis alba

Species: Sinapis alba

Genus: Sinapis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743715|dbj|BAE99694.1| hypothetical protein [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 92/137 (67%), Gaps = 21/137 (15%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           MAKVGKLTKLKSAMKK PSF +    +        TS+AA SD     ++ DNN     L
Sbjct: 1   MAKVGKLTKLKSAMKKWPSFAKNHHHS--------TSSAAVSDE----LSEDNN-----L 43

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSG--GFDDEGEVVVACEVVLFEHLLWMLES 118
           H VYVG++RR Y L  D+I HPLFQEL++RS     + + E+VVACEVVLFEHLLWML+S
Sbjct: 44  HVVYVGQTRRPYMLRPDIISHPLFQELVDRSSSRSIEQDREIVVACEVVLFEHLLWMLKS 103

Query: 119 STGTQLGSMQELVDFYT 135
             G +  S++EL +FYT
Sbjct: 104 --GQEGRSVEELAEFYT 118

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282583|dbj|BAJ34157.1| unnamed protein product [Thellungiella halophila]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 91/136 (66%), Gaps = 20/136 (14%)

Query: 1   MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
           MAKVGKLTKLKSAMKK PSF +       N     +SAA   +     ++ DNN     L
Sbjct: 1   MAKVGKLTKLKSAMKKWPSFAK-------NHHHSSSSAAVSDE-----LSEDNN-----L 43

Query: 61  HAVYVGKSRRQYYLTSDVICHPLFQELIERSG-GFDDEGEVVVACEVVLFEHLLWMLESS 119
           H VYVG++RR Y L  D+I HPLFQEL++RS    + + E+VVACEVVLFEHLLWML+  
Sbjct: 44  HVVYVGQTRRPYMLRPDIISHPLFQELVDRSSRSVEQDREIVVACEVVLFEHLLWMLK-- 101

Query: 120 TGTQLGSMQELVDFYT 135
           TG + GS++EL +FYT
Sbjct: 102 TGQEGGSVEELAEFYT 117

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:1005716750	131	AT1G17345 "AT1G17345" [Arabido	0.875	0.908	0.486	4.2e-24
TAIR|locus:2180479	127	AT5G20820 "AT5G20820" [Arabido	0.904	0.968	0.45	1.5e-21
TAIR|locus:2193927	119	AT1G72430 "AT1G72430" [Arabido	0.654	0.747	0.549	1.9e-21
TAIR|locus:505006337	139	AT3G12955 "AT3G12955" [Arabido	0.904	0.884	0.325	5.8e-11
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.426	0.305	0.360	2e-06
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.419	0.356	0.366	2.1e-06
TAIR|locus:2128136	189	AT4G31320 [Arabidopsis thalian	0.573	0.412	0.296	3.6e-06
TAIR|locus:2032915	147	SAUR41 "AT1G16510" [Arabidopsi	0.573	0.530	0.280	3.8e-05
TAIR|locus:2087700	132	AT3G12830 "AT3G12830" [Arabido	0.5	0.515	0.263	6.3e-05
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	0.397	0.504	0.333	6.3e-05

TAIR|locus:1005716750 AT1G17345 "AT1G17345" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 71/146 (48%), Positives = 91/146 (62%)

Query:     1 MAKVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKEL 60
             MA  GKLTKLKSA+KK PS  +   ST      M T++ A S+  +           ++L
Sbjct:     1 MAIFGKLTKLKSAIKKWPSLTKNHHST------MCTASTAVSEVSK----------CEDL 44

Query:    61 HAVYVGKSRRQYYLTSDVICHPLFQELIERSGGF----DDEGEVVVACEVVLFEHLLWML 116
             H VYVGKSRR Y L+S VI HPLFQEL++RS  F     D+  V+VACEVVLFEHLLWML
Sbjct:    45 HVVYVGKSRRPYMLSSHVIAHPLFQELLDRSSRFIEERHDQETVLVACEVVLFEHLLWML 104

Query:   117 ESSTGT-------QLGSMQELVDFYT 135
             ++S+         + GS++EL +FYT
Sbjct:   105 KNSSSDHGDEDDRERGSVEELAEFYT 130

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180479 AT5G20820 "AT5G20820" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 63/140 (45%), Positives = 86/140 (61%)

Query:     1 MAKVG-KLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKE 59
             MAK G KL KLKS +KKL SF     +T  N         A ++H R   +  +   +++
Sbjct:     1 MAKGGNKLMKLKSVLKKLNSF-----NTKPN------QPPAQTNHSRS--SAVSAFPSED 47

Query:    60 LHAVYVGKSRRQYYLTSDVICHPLFQELIERSGGFDDE-GEVVVACEVVLFEHLLWMLES 118
             L  VYVG++RR Y+++SDV+ HPLFQ+L    GG   E G + V+CEVVLFEHLLWMLE+
Sbjct:    48 LQTVYVGRTRRTYHVSSDVVSHPLFQQLAAVDGGCGSEDGSISVSCEVVLFEHLLWMLEN 107

Query:   119 STGTQLG--SMQELVDFYTC 136
             +   +    S+ ELV+FY C
Sbjct:   108 ADADESRPESVYELVEFYAC 127

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2193927 AT1G72430 "AT1G72430" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 56/102 (54%), Positives = 72/102 (70%)

Query:    36 TSAAADSDHHRKIVNGDNNVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGG-- 93
             TS+AA SD     ++ DNN     LH VYVG++RR Y L  D+I HPLFQEL++RS    
Sbjct:    28 TSSAAVSDE----LSEDNN-----LHVVYVGQTRRPYMLRPDIISHPLFQELVDRSSSRS 78

Query:    94 FDDEGEVVVACEVVLFEHLLWMLESSTGTQLGSMQELVDFYT 135
              + + E+VVACEVVLFEHLLWML+S  G + GS++EL +FYT
Sbjct:    79 IEQDREIVVACEVVLFEHLLWMLKS--GQEGGSVEELAEFYT 118

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:505006337 AT3G12955 "AT3G12955" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 44/135 (32%), Positives = 69/135 (51%)

Query:     6 KLTKLKSAMKKLPSFP-RLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKELHAVY 64
             K  +L   +++  S   +L RS S   SL   SA  D   H + V  D +        V 
Sbjct:     3 KKMRLMMMLRRCKSVSTQLGRSYSYT-SLRSKSARRDPQDHLQDV--DQSPTPSMYQTVL 59

Query:    65 VGKSRRQYYLTSDVICHPLFQELIERSGGFD-DEGE-----VVVACEVVLFEHLLWMLES 118
             VG++++ Y ++   + HPL   L+E+   ++ D+ E     + V CEVVLF+HLLWMLE 
Sbjct:    60 VGRTKKPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFDHLLWMLEY 119

Query:   119 STGTQLGSMQELVDF 133
               G ++  ++ L DF
Sbjct:   120 --GDEVHILESLDDF 132

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query:    62 AVYVGKSRRQYYLTSDVICHPLFQELIERSG---GFDDEGEVVVACEVVLFEHLLWMLES 118
             AVYVG   R++ + +  + H LF+ L+E++    GFD  G + + CEV  F++LL  +E+
Sbjct:    85 AVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETFKYLLKCMEN 144

Query:   119 S 119
             +
Sbjct:   145 N 145

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query:    62 AVYVGKSRRQYYLTSDVICHPLFQELIERSG---GFDDEGEVVVACEVVLFEHLLWMLES 118
             AVYVG   R++ + ++ + H LF+ L+E++    GFD  G + + CEV  F++LL  +E+
Sbjct:    85 AVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETFKYLLKCIEN 144

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2128136 AT4G31320 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query:    52 DNNVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELI---ERSGGFDDEGEVVVACEVVL 108
             D     K   AV VGK  ++Y + ++ + H  F  L+   E   GF+  G + + CEV +
Sbjct:    76 DTTAIPKGYLAVSVGKEEKRYKIPTEYLSHQAFHVLLREAEEEFGFEQAGILRIPCEVAV 135

Query:   109 FEHLLWMLESSTGTQLGSMQE 129
             FE +L ++E +      + QE
Sbjct:   136 FESILKIMEDNKSDAYLTTQE 156

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2032915 SAUR41 "AT1G16510" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 23/82 (28%), Positives = 45/82 (54%)

Query:    53 NNVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSG---GFDDEGEVVVACEVVLF 109
             N V A  +  VYVG+   ++ ++++++ HP+F  L+ RS    G+  +G + + C V++F
Sbjct:    52 NTVPAGHV-PVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVF 110

Query:   110 EHLLWMLESSTGTQLGSMQELV 131
             E ++  L        G ++ LV
Sbjct:   111 ERVVETLRLGGFEGSGDLENLV 132

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2087700 AT3G12830 "AT3G12830" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 19/72 (26%), Positives = 42/72 (58%)

Query:    63 VYVGKSRRQYYLTSDVICHPLFQELIERSG---GFDDEGEVVVACEVVLFEHLLWMLESS 119
             VYVG    ++ ++++++ HP+F  L+ RS    G++ +G + + C V++FE ++  L   
Sbjct:    57 VYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIMESLRLG 116

Query:   120 TGTQLGSMQELV 131
                 +  +Q+L+
Sbjct:   117 LPVPI-DVQDLI 127

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query:    63 VYVGKSRRQYYLTSDVICHPLFQELIERSG---GFDDEGEVVVACEVVLFEHLLWML 116
             VYVG++R +Y +    + HP FQ L++R+    GFD +  + + C+ ++F+ L  M+
Sbjct:    50 VYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMI 106

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	8e-17
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	1e-05

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 70.0 bits (172), Expect = 8e-17
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 5/79 (6%)

Query: 44  HHRKIVNGDNNVNA--KELHAVYVGKSRRQYYLTSDVICHPLFQELIERSG---GFDDEG 98
              +  +  ++     K   AVYVG+  R++ +    + HPLFQEL++R+    GFD +G
Sbjct: 21  GRSRGSSSKSSSADVPKGHFAVYVGEETRRFVVPISYLNHPLFQELLDRAEEEFGFDQDG 80

Query: 99  EVVVACEVVLFEHLLWMLE 117
            + + C+VV+FEHLLWMLE
Sbjct: 81  GLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 62  AVYVGKSRRQYYLTSDVICHPLFQELIERSG---GFDDEGEVVVACEVVLFEHLLWML 116
            VYVG++R +Y +    + HP FQ L++++    GFD +  + + CE V+F  L  M+
Sbjct: 46  PVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	99.97
PLN03220	105	uncharacterized protein; Provisional	99.96
PLN03219	108	uncharacterized protein; Provisional	99.95
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	95.0

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=2.2e-37  Score=224.02  Aligned_cols=93  Identities=28%  Similarity=0.468  Sum_probs=81.7

Q ss_pred             hhhhHHHHHHHHHhcCCCccccCCcccCcccccccccccccccccccCCCCCCCCCceEEEEEcCcceEEEEeccccCCH
Q 032663            3 KVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKELHAVYVGKSRRQYYLTSDVICHP   82 (136)
Q Consensus         3 ki~~i~kLk~~lkKw~~~a~~~r~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~vpkG~~~VyVG~e~~RfvVp~~~L~hp   82 (136)
                      ||.++++|||+||||+++++.+...                     ....+.+||+||||||||++++||+||++|||||
T Consensus         8 ki~~~~~~kq~l~r~~s~~~~~~~~---------------------~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP   66 (104)
T PLN03090          8 KLTQTAMLKQILKRCSSLGKKQGYD---------------------EDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHP   66 (104)
T ss_pred             chhHHHHHHHHHHHHHHhcccCCcc---------------------cccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCH
Confidence            7889999999999999997654210                     0124668999999999999999999999999999


Q ss_pred             HHHHHHHHhC-C--CCCCCcEEEcCchHHHHHHHHHH
Q 032663           83 LFQELIERSG-G--FDDEGEVVVACEVVLFEHLLWML  116 (136)
Q Consensus        83 ~F~~LL~~ae-e--f~~~G~l~iPCd~~~Fe~ll~~l  116 (136)
                      +|++||++|| |  |+++|+|+||||+++|++++|+|
T Consensus        67 ~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         67 EFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             HHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            9999999999 3  56889999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=99.97  E-value=3.3e-32  Score=195.64  Aligned_cols=64  Identities=48%  Similarity=0.941  Sum_probs=60.8

Q ss_pred             CCCCCceEEEEEcCcceEEEEeccccCCHHHHHHHHHhCC---CCCCCcEEEcCchHHHHHHHHHHh
Q 032663           54 NVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGG---FDDEGEVVVACEVVLFEHLLWMLE  117 (136)
Q Consensus        54 ~~vpkG~~~VyVG~e~~RfvVp~~~L~hp~F~~LL~~aee---f~~~G~l~iPCd~~~Fe~ll~~l~  117 (136)
                      .++|+|||+||||++++||+||++|||||+|++||++|+|   |+++|+|+||||+++||+++|+|+
T Consensus        34 ~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   34 SDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            6789999999999999999999999999999999999994   568999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=99.96  E-value=1.6e-29  Score=182.87  Aligned_cols=84  Identities=23%  Similarity=0.469  Sum_probs=69.2

Q ss_pred             HHHHHHHHhcCCCccccCCcccCcccccccccccccccccccCCCCCCCCCceEEEEEcC----cceEEEEeccccCCHH
Q 032663            8 TKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKELHAVYVGK----SRRQYYLTSDVICHPL   83 (136)
Q Consensus         8 ~kLk~~lkKw~~~a~~~r~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~vpkG~~~VyVG~----e~~RfvVp~~~L~hp~   83 (136)
                      .+.||++|+++ ++...+..                      +..+.+||||||+||||+    |++||+||++|||||.
T Consensus        10 ~~~k~~~~~~~-~~~~~~~~----------------------~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~   66 (105)
T PLN03220         10 NATKQILKLNS-LANRNRTS----------------------SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPS   66 (105)
T ss_pred             HHHHHHHHHHh-hccccccc----------------------ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChH
Confidence            35699999998 55433221                      012457999999999997    5899999999999999


Q ss_pred             HHHHHHHhCC---CCC-CCcEEEcCchHHHHHHHH
Q 032663           84 FQELIERSGG---FDD-EGEVVVACEVVLFEHLLW  114 (136)
Q Consensus        84 F~~LL~~aee---f~~-~G~l~iPCd~~~Fe~ll~  114 (136)
                      |++||++|||   |++ +|+|+||||++.|++++.
T Consensus        67 F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         67 FKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            9999999993   566 699999999999999985

>PLN03219 uncharacterized protein; Provisional

Probab=99.95  E-value=4.8e-28  Score=175.95  Aligned_cols=65  Identities=28%  Similarity=0.562  Sum_probs=58.6

Q ss_pred             CCCCCCCCceEEEEEcC--cceEEEEeccccCCHHHHHHHHHhCC---CCC-CCcEEEcCchHHHHHHHHH
Q 032663           51 GDNNVNAKELHAVYVGK--SRRQYYLTSDVICHPLFQELIERSGG---FDD-EGEVVVACEVVLFEHLLWM  115 (136)
Q Consensus        51 ~~~~~vpkG~~~VyVG~--e~~RfvVp~~~L~hp~F~~LL~~aee---f~~-~G~l~iPCd~~~Fe~ll~~  115 (136)
                      +.+.+||||||+||||+  |++||+||++|||||+|++||++|||   |++ +|+|+||||++.|++||..
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            34568999999999997  59999999999999999999999993   555 6999999999999999875

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=95.00  E-value=0.028  Score=38.46  Aligned_cols=72  Identities=24%  Similarity=0.346  Sum_probs=51.8

Q ss_pred             EEEEcCcceEEEEeccccC-C--HHHHHHHHHh-C-C-CCCCCcEEEcCchHHHHHHHHHHhcC-C--CC---CccCHHH
Q 032663           62 AVYVGKSRRQYYLTSDVIC-H--PLFQELIERS-G-G-FDDEGEVVVACEVVLFEHLLWMLESS-T--GT---QLGSMQE  129 (136)
Q Consensus        62 ~VyVG~e~~RfvVp~~~L~-h--p~F~~LL~~a-e-e-f~~~G~l~iPCd~~~Fe~ll~~l~~~-~--~~---~~~sl~e  129 (136)
                      .+=||.  ++|.++.+.|. +  ..|..|+... . . -+.+|.+.|.++...|++||..++.+ .  .+   ....+.+
T Consensus         2 ~lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~   79 (94)
T PF02214_consen    2 RLNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLE   79 (94)
T ss_dssp             EEEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred             EEEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence            345774  89999998887 4  4788888864 2 2 34679999999999999999999993 2  11   2344666


Q ss_pred             HHhhcc
Q 032663          130 LVDFYT  135 (136)
Q Consensus       130 l~~fy~  135 (136)
                      -++||.
T Consensus        80 Ea~fy~   85 (94)
T PF02214_consen   80 EAEFYG   85 (94)
T ss_dssp             HHHHHT
T ss_pred             HHHHcC
Confidence            777874

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 6/30 (20%)

Query: 6  KLTKLKSAMKKL-P-SFPRLSRSTSINCSL 33
           L KL++++K     S P L    +I  ++
Sbjct: 21 ALKKLQASLKLYADDSAPAL----AIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	92.8
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	87.98
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	87.31
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	83.45
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	80.11

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=92.80  E-value=0.3  Score=33.66  Aligned_cols=76  Identities=18%  Similarity=0.338  Sum_probs=54.2

Q ss_pred             CceEEEEEcCcceEEEEeccccCC-H--HHHHHHHHhCC----CCCCCcEEEcCchHHHHHHHHHHhcCCC--C---Ccc
Q 032663           58 KELHAVYVGKSRRQYYLTSDVICH-P--LFQELIERSGG----FDDEGEVVVACEVVLFEHLLWMLESSTG--T---QLG  125 (136)
Q Consensus        58 kG~~~VyVG~e~~RfvVp~~~L~h-p--~F~~LL~~aee----f~~~G~l~iPCd~~~Fe~ll~~l~~~~~--~---~~~  125 (136)
                      ...+.+-||.  ++|.+..+-|.. |  .|..|......    .+.+|.+.|..|...|++||..++.+.=  +   ...
T Consensus         5 ~~~v~LNVGG--~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p~~~~~~   82 (107)
T 3drz_A            5 SKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEE   82 (107)
T ss_dssp             CCEEEEEETT--EEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCCTTSCHH
T ss_pred             CCEEEEEECC--EEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCCCCCCHH
Confidence            4577888994  899999887753 3  46666432212    3467899999999999999999988731  1   124


Q ss_pred             CHHHHHhhcc
Q 032663          126 SMQELVDFYT  135 (136)
Q Consensus       126 sl~el~~fy~  135 (136)
                      .+.+-++||.
T Consensus        83 ~l~~Ea~fy~   92 (107)
T 3drz_A           83 GVLEEAEFYN   92 (107)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHCC
Confidence            4667778874

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=87.98  E-value=1.1  Score=34.90  Aligned_cols=76  Identities=18%  Similarity=0.368  Sum_probs=54.7

Q ss_pred             CCceEEEEEcCcceEEEEeccccCC-H--HHHHHHHHhCCC----CCCCcEEEcCchHHHHHHHHHHhcCCCC------C
Q 032663           57 AKELHAVYVGKSRRQYYLTSDVICH-P--LFQELIERSGGF----DDEGEVVVACEVVLFEHLLWMLESSTGT------Q  123 (136)
Q Consensus        57 pkG~~~VyVG~e~~RfvVp~~~L~h-p--~F~~LL~~aeef----~~~G~l~iPCd~~~Fe~ll~~l~~~~~~------~  123 (136)
                      ....+.+-||.  +||.+..+-|.. |  .|..|......+    +.+|.+.|..|...|++||..++.+ .-      .
T Consensus        10 ~~~~V~LNVGG--~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG-~L~lP~~~~   86 (202)
T 3drx_A           10 VSKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG-KLVINKDLA   86 (202)
T ss_dssp             CCCEEEEEETT--EEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHS-CCCCCTTSC
T ss_pred             CCCEEEEEECC--EEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCC-ccCCCCCCC
Confidence            34578889994  899999888754 4  556664322223    3679999999999999999999987 32      1


Q ss_pred             ccCHHHHHhhcc
Q 032663          124 LGSMQELVDFYT  135 (136)
Q Consensus       124 ~~sl~el~~fy~  135 (136)
                      ...+.+-++||.
T Consensus        87 ~~~l~eEA~Fyg   98 (202)
T 3drx_A           87 EEGVLEEAEFYN   98 (202)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCC
Confidence            244667778884

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=87.31  E-value=0.45  Score=34.05  Aligned_cols=75  Identities=17%  Similarity=0.280  Sum_probs=52.2

Q ss_pred             CCceEEEEEcCcceEEEEeccccCC-HHHHHHHHHhCC---C-CCCCcEEEcCchHHHHHHHHHHhcCCC--C---CccC
Q 032663           57 AKELHAVYVGKSRRQYYLTSDVICH-PLFQELIERSGG---F-DDEGEVVVACEVVLFEHLLWMLESSTG--T---QLGS  126 (136)
Q Consensus        57 pkG~~~VyVG~e~~RfvVp~~~L~h-p~F~~LL~~aee---f-~~~G~l~iPCd~~~Fe~ll~~l~~~~~--~---~~~s  126 (136)
                      +...+.+-||.  ++|.+..+-|.. |-  .+|..++.   + +.+|.+.|..|...|++||..++.+.=  +   ....
T Consensus        11 ~~~~V~LNVGG--~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~p~~~~~~~   86 (124)
T 1s1g_A           11 QDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISA   86 (124)
T ss_dssp             -CCEEEEEETT--EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBCCCTTSCHHH
T ss_pred             CCCEEEEEeCC--EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCCCCCCcCHHH
Confidence            45678888994  899998876642 21  12333331   3 367999999999999999999998730  1   2345


Q ss_pred             HHHHHhhcc
Q 032663          127 MQELVDFYT  135 (136)
Q Consensus       127 l~el~~fy~  135 (136)
                      +.|-++||.
T Consensus        87 l~~Ea~fy~   95 (124)
T 1s1g_A           87 YDDELAFYG   95 (124)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            777788884

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=83.45  E-value=0.38  Score=33.97  Aligned_cols=75  Identities=13%  Similarity=0.090  Sum_probs=49.8

Q ss_pred             ceEEEEEcCcceEEEEeccccCC-H--HHHHHHHHhCCC-CCCCcEEEcCchHHHHHHHHHHhcCCC--C---CccCHHH
Q 032663           59 ELHAVYVGKSRRQYYLTSDVICH-P--LFQELIERSGGF-DDEGEVVVACEVVLFEHLLWMLESSTG--T---QLGSMQE  129 (136)
Q Consensus        59 G~~~VyVG~e~~RfvVp~~~L~h-p--~F~~LL~~aeef-~~~G~l~iPCd~~~Fe~ll~~l~~~~~--~---~~~sl~e  129 (136)
                      ..+.+-||.  +||....+-|.. |  .+..|......+ +..|.+.|.-|...|++||..++.+.=  |   ....+.|
T Consensus         5 ~~V~LNVGG--~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~   82 (115)
T 3kvt_A            5 NRVIINVGG--IRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEE   82 (115)
T ss_dssp             CEEEEEETT--EEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHH
T ss_pred             CEEEEEECC--EEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhcCCCCCCCCcccHHHHHH
Confidence            467888994  899998766542 2  122222111112 267899999999999999999988730  1   2345777


Q ss_pred             HHhhcc
Q 032663          130 LVDFYT  135 (136)
Q Consensus       130 l~~fy~  135 (136)
                      -++||.
T Consensus        83 Ea~fy~   88 (115)
T 3kvt_A           83 ELEFWG   88 (115)
T ss_dssp             HHHHHT
T ss_pred             HHHHhC
Confidence            788884

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=80.11  E-value=1.3  Score=30.47  Aligned_cols=73  Identities=18%  Similarity=0.289  Sum_probs=48.1

Q ss_pred             EEEEEcCcceEEEEecccc-CCH--HHHHHHHHhCCCC-CCCcEEEcCchHHHHHHHHHHhc-CC--CC---CccCHHHH
Q 032663           61 HAVYVGKSRRQYYLTSDVI-CHP--LFQELIERSGGFD-DEGEVVVACEVVLFEHLLWMLES-ST--GT---QLGSMQEL  130 (136)
Q Consensus        61 ~~VyVG~e~~RfvVp~~~L-~hp--~F~~LL~~aeef~-~~G~l~iPCd~~~Fe~ll~~l~~-~~--~~---~~~sl~el  130 (136)
                      +.+-||.  +||....+-| ++|  .+..+......++ ..|.+.|.-|...|++||..++. +.  -|   ....+.+-
T Consensus         3 v~LNVGG--~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~E   80 (100)
T 1t1d_A            3 VVINVSG--LRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE   80 (100)
T ss_dssp             EEEEETT--EEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred             EEEEECC--EEEEeeHHHHhcCCCccccchhccccccCCCceeEEEcCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHH
Confidence            5566884  8898887655 222  2233333322343 67899999999999999999998 42  12   23446777


Q ss_pred             Hhhcc
Q 032663          131 VDFYT  135 (136)
Q Consensus       131 ~~fy~  135 (136)
                      ++||.
T Consensus        81 a~fy~   85 (100)
T 1t1d_A           81 IKFYE   85 (100)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            88874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	92.91
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	91.94
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	90.69

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=92.91  E-value=0.024  Score=37.65  Aligned_cols=73  Identities=16%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             EEEEEcCcceEEEEeccccCC-H--HHHHHHHHhCCC-CCCCcEEEcCchHHHHHHHHHHhcCCCC------CccCHHHH
Q 032663           61 HAVYVGKSRRQYYLTSDVICH-P--LFQELIERSGGF-DDEGEVVVACEVVLFEHLLWMLESSTGT------QLGSMQEL  130 (136)
Q Consensus        61 ~~VyVG~e~~RfvVp~~~L~h-p--~F~~LL~~aeef-~~~G~l~iPCd~~~Fe~ll~~l~~~~~~------~~~sl~el  130 (136)
                      +.+-||.  ++|.+..+-|.. |  .+..|......+ +.+|.+.|.-|...|++||..++++...      ....+.+-
T Consensus         3 I~LNVGG--~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~FiDRdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~E   80 (100)
T d1t1da_           3 VVINVSG--LRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE   80 (100)
T ss_dssp             EEEEETT--EEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred             EEEEECC--EEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEEecCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHH
Confidence            4566884  899998776644 3  344444333333 4678999999999999999999875211      23446666


Q ss_pred             Hhhcc
Q 032663          131 VDFYT  135 (136)
Q Consensus       131 ~~fy~  135 (136)
                      ++||.
T Consensus        81 a~y~g   85 (100)
T d1t1da_          81 IKFYE   85 (100)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            78873

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.94  E-value=0.017  Score=38.60  Aligned_cols=72  Identities=11%  Similarity=0.150  Sum_probs=47.8

Q ss_pred             EEEEEcCcceEEEEecccc-CCHH--HHHHHHHhCCC-CCCCcEEEcCchHHHHHHHHHHhcCCC--C---CccCHHHHH
Q 032663           61 HAVYVGKSRRQYYLTSDVI-CHPL--FQELIERSGGF-DDEGEVVVACEVVLFEHLLWMLESSTG--T---QLGSMQELV  131 (136)
Q Consensus        61 ~~VyVG~e~~RfvVp~~~L-~hp~--F~~LL~~aeef-~~~G~l~iPCd~~~Fe~ll~~l~~~~~--~---~~~sl~el~  131 (136)
                      +.+-||.  ++|.+..+-| ++|.  +..+.+ ...+ +.+|.+.|..|...|++||..++.+.=  +   ....+.+-+
T Consensus         2 I~LNVGG--~~f~t~~~TL~~~p~s~l~~~~~-~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea   78 (105)
T d1nn7a_           2 IVLNVSG--TRFQTWQDTLERYPDTLLGSSER-DFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEEL   78 (105)
T ss_dssp             EEEEETT--EEEEECHHHHHTSCSSSTTSGGG-GGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHH
T ss_pred             EEEEECC--EEEEEeHHHHhcCCCCCcccccc-ccCcCCCCCcEEEeCCHHHHHHHHHHHhcCccccCCCccHHHHHHHH
Confidence            4667885  8999998766 3443  111110 0112 367899999999999999999998730  1   234466667


Q ss_pred             hhcc
Q 032663          132 DFYT  135 (136)
Q Consensus       132 ~fy~  135 (136)
                      +||.
T Consensus        79 ~fyg   82 (105)
T d1nn7a_          79 AFFG   82 (105)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            8884

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=90.69  E-value=0.036  Score=36.76  Aligned_cols=74  Identities=14%  Similarity=0.098  Sum_probs=48.7

Q ss_pred             eEEEEEcCcceEEEEeccccCC-H--HHHHHHHHhCCC-CCCCcEEEcCchHHHHHHHHHHhcCCC--CC---ccCHHHH
Q 032663           60 LHAVYVGKSRRQYYLTSDVICH-P--LFQELIERSGGF-DDEGEVVVACEVVLFEHLLWMLESSTG--TQ---LGSMQEL  130 (136)
Q Consensus        60 ~~~VyVG~e~~RfvVp~~~L~h-p--~F~~LL~~aeef-~~~G~l~iPCd~~~Fe~ll~~l~~~~~--~~---~~sl~el  130 (136)
                      .+.+=||.  ++|.+..+-|.. |  .|..+.+....+ +.+|.+.|.-|...|++||..++.+.-  +.   ...+.+-
T Consensus         3 rI~LNVGG--~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~E   80 (103)
T d3kvta_           3 RVIINVGG--IRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEE   80 (103)
T ss_dssp             EEEEEETT--EEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHH
T ss_pred             EEEEEECC--EEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEecCCHHHHHHHHHHHccCCcccccccCHHHHHHH
Confidence            45667885  899999887763 3  222222111112 367899999999999999999988731  11   2335556


Q ss_pred             Hhhcc
Q 032663          131 VDFYT  135 (136)
Q Consensus       131 ~~fy~  135 (136)
                      ++||.
T Consensus        81 a~yyg   85 (103)
T d3kvta_          81 LEFWG   85 (103)
T ss_dssp             HHHHT
T ss_pred             HHHcC
Confidence            78874