Citrus Sinensis ID: 032703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNIINFTFGRWNHW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEc
Coil and Loop (DISEMBL)
MGSIAKKGLQQYLIQLQqhplrtkaITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGcaylgpfgHFLHLILDKIfkgkkdtsTVAKKVVLEQltsspwnnLMFMIYYGVVVEGKLILHNIINftfgrwnhw
Flexible Loop (DISEMBL)
mgsiakkgLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVleqltsspwnnLMFMIYYGVVVEGKLILHNIINftfgrwnhw
Low Complexity Region (SEG)
MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIqklqlrrlllkVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNIINFTFGRWNHW
Disordered region (IsUnstruct)
********LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNIINFTFGRWN**
Disordered Region (DISOPRED)
****AKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNIINFTFGRWNHW
Disordered Region (DISEMBL)
MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNIINFTFGRWNHW
Disordered Region (DISPRO)
*GSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNIINFTFGRWNHW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNIINFTFGRWNHW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q9ZS51	190	Peroxisomal membrane prot	yes	no	0.859	0.610	0.728	8e-43
Q54GD8	184	PXMP2/4 family protein 3	yes	no	0.762	0.559	0.339	4e-10
Q2KIY1	196	Peroxisomal membrane prot	yes	no	0.740	0.510	0.305	3e-09
Q07066	194	Peroxisomal membrane prot	yes	no	0.948	0.659	0.296	3e-09
Q54FR4	185	PXMP2/4 family protein 4	no	no	0.792	0.578	0.345	2e-08
Q9NR77	195	Peroxisomal membrane prot	yes	no	0.562	0.389	0.304	2e-06
P39210	176	Protein Mpv17 OS=Homo sap	no	no	0.674	0.517	0.315	2e-06
Q54XX9	193	PXMP2/4 family protein 2	no	no	0.851	0.595	0.330	2e-06
Q5BK62	176	Protein Mpv17 OS=Rattus n	no	no	0.674	0.517	0.305	4e-06
Q2KIN6	176	Protein Mpv17 OS=Bos taur	no	no	0.674	0.517	0.294	4e-06

>sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1

 Score =  172 bits (435), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 99/118 (83%), Gaps = 2/118 (1%)

Query: 1   MGSIAKK--GLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVL 58
           MGS   K   LQ+YL QLQQHPLRTKAITAGVLS +SD+V+QKL+GIQK+QLRR+LLKV+
Sbjct: 1   MGSSPPKKTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVI 60

Query: 59  FGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVE 116
           F   +LGP GHF H  LDK FKGKKDT TVAKKV+LEQLT SP N+L+FMIYYGVV+E
Sbjct: 61  FAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIE 118

May be involved in the metabolism of reactive oxygen species.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 6/109 (5%)

Query: 12  YLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFL 71
           Y+ +L+  P++TKA+T+  LS IS +VAQK    +K+    ++   ++G     P  H+ 
Sbjct: 17  YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLIS-SPLVHYW 75

Query: 72  HLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGK 118
           H+ILD++FK  KD      K++++QL  +P+ N+ F   Y V  +++GK
Sbjct: 76  HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAF---YSVLAILDGK 121

Dictyostelium discoideum (taxid: 44689)

>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 8/108 (7%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQ-------KLTGIQKLQLRRL 53
           +G + ++ L QYL  L+ +P+ TKA T+G+LSA+ + +AQ       K    QKL +   
Sbjct: 14  LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP 73

Query: 54  LLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
           L   ++G  + GP GHF +L++++    +   + + K+++L++L  +P
Sbjct: 74  LRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGI-KRLLLDRLLFAP 120

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Bos taurus (taxid: 9913)

>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 3   SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQK-----LQLRRLLLKV 57
           S+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +   QK     L++  LL  +
Sbjct: 16  SLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYL 75

Query: 58  LFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEG 117
           ++G    GP  H+L+L ++     +   + V K+++L++L  +P   L+   +   ++EG
Sbjct: 76  VYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAP-TFLLLFFFVMNLLEG 133

Query: 118 KLILHNIINFTFGRW 132
           K I   +     G W
Sbjct: 134 KNISVFVAKMRSGFW 148

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 10  QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL----TGIQKLQLRRLLLKVLFGCAYLG 65
             YL QL ++P+ TKA+T+G L  ISD + Q +       +K   +R +   +FG A  G
Sbjct: 13  SHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTG 72

Query: 66  PFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
           P  H+    LDK F  KK       K+ ++Q+  SP  N +F    G ++EGK
Sbjct: 73  PLFHYWFKYLDKHFP-KKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGK 123

Dictyostelium discoideum (taxid: 44689)

>sp|Q9NR77|PXMP2_HUMAN Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 1  MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRR------LL 54
          +G++ ++ L QYL+ L+ +P+ TKA T+G+LSA+ + +AQ +   +K +  R       L
Sbjct: 14 LGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPL 73

Query: 55 LKVLFGCAYLGPFGHFLHLILD 76
             ++G  + GP  HF +  ++
Sbjct: 74 RYAVYGFFFTGPLSHFFYFFME 95

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Homo sapiens (taxid: 9606)

>sp|P39210|MPV17_HUMAN Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 10  QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
           + Y   L  HP + + +TAG L  + DI++Q+L    G+Q+ Q  R L  V  GC ++GP
Sbjct: 5   RAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGP 64

Query: 67  FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
                + +LD+   G      + KK++L+Q   +P
Sbjct: 65  VVGGWYKVLDRFIPGTTKVDAL-KKMLLDQGGFAP 98

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Homo sapiens (taxid: 9606)

>sp|Q54XX9|PX24B_DICDI PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 12  YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-------GIQKLQLRRLLLKVLFGCAYL 64
           YL  L  HPL TK+++ G L    DI+AQ+L           KL  +R+      G  Y 
Sbjct: 8   YLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYS 67

Query: 65  GPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNI 124
           GP  H+ +  LD + KG +  S + KK++++QL  +P     FM      +  K  L N+
Sbjct: 68  GPMLHYWYRSLDIMVKG-EGRSVIIKKMLIDQLLFAPVAIGGFMTVTN-FINNKGELKNL 125

Query: 125 INFT 128
            NFT
Sbjct: 126 ENFT 129

Dictyostelium discoideum (taxid: 44689)

>sp|Q5BK62|MPV17_RAT Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 10  QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
           + Y   L  HP + + +TAG L  + DI++Q+L    G+Q+ Q  R L     GC ++GP
Sbjct: 5   RAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVGP 64

Query: 67  FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
                + +LD +  G    + + KK++L+Q   +P
Sbjct: 65  VVGGWYRVLDHLIPGTTKVNAL-KKMLLDQGGFAP 98

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Rattus norvegicus (taxid: 10116)

>sp|Q2KIN6|MPV17_BOVIN Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 10  QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
           + Y   L  HP + + +TAG L  + D+++Q+L    G+Q  Q  R L     GC ++GP
Sbjct: 5   RAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQAHQAGRTLTMASLGCGFVGP 64

Query: 67  FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
                + +LD++  G      + KK++L+Q   +P
Sbjct: 65  VVGGWYRVLDRLIPGTTKVDAL-KKMLLDQGGFAP 98

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
351723819	185	uncharacterized protein LOC100499909 [Gl	0.874	0.637	0.813	3e-50
356532038	185	PREDICTED: peroxisomal membrane protein	0.874	0.637	0.805	5e-50
255637621	185	unknown [Glycine max]	0.874	0.637	0.788	2e-48
224113703	185	predicted protein [Populus trichocarpa]	0.874	0.637	0.788	2e-44
449433976	185	PREDICTED: peroxisomal membrane protein	0.874	0.637	0.703	3e-44
449523477	185	PREDICTED: peroxisomal membrane protein	0.874	0.637	0.703	3e-44
242064532	205	hypothetical protein SORBIDRAFT_04g00800	0.851	0.560	0.713	4e-42
449458842	183	PREDICTED: peroxisomal membrane protein	0.874	0.644	0.703	6e-42
413936722	203	peroxisomal membrane protein PMP22 [Zea	0.859	0.571	0.698	1e-41
195628060	203	peroxisomal membrane protein PMP22 [Zea	0.859	0.571	0.698	2e-41

>gi|351723819|ref|NP_001237804.1| uncharacterized protein LOC100499909 [Glycine max] gi|255627583|gb|ACU14136.1| unknown [Glycine max]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 110/118 (93%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKKGL  Y+ QLQQHPLRTK ITAGVLSAISD+V+QKLTGIQKLQL+RLL KV+FG
Sbjct: 1   MGSLAKKGLNNYVKQLQQHPLRTKVITAGVLSAISDVVSQKLTGIQKLQLKRLLFKVIFG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
            AYLGPFGHF HLILDKIFKGK+D+ TVAKKV++EQLTS+PWNNL+FMIYYG+VVEG+
Sbjct: 61  AAYLGPFGHFFHLILDKIFKGKRDSKTVAKKVLIEQLTSNPWNNLLFMIYYGLVVEGQ 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532038|ref|XP_003534581.1| PREDICTED: peroxisomal membrane protein PMP22-like [Glycine max]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 110/118 (93%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKKGL  Y+ QLQQHPLRTK ITAGVLSAISD+V+QKLTGIQK+QL+RLL KV+FG
Sbjct: 1   MGSLAKKGLNNYVKQLQQHPLRTKVITAGVLSAISDVVSQKLTGIQKIQLKRLLFKVIFG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
            AYLGPFGHF HLILDKIFKGK+D+ TVAKKV++EQLTS+PWNNL+FMIYYG+VVEG+
Sbjct: 61  AAYLGPFGHFFHLILDKIFKGKRDSKTVAKKVLIEQLTSNPWNNLLFMIYYGLVVEGQ 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637621|gb|ACU19135.1| unknown [Glycine max]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 108/118 (91%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKKGL  Y+ QLQQHPLRTK ITAGVLSAISD+V+QKLTGIQK+QL+RLL KV+FG
Sbjct: 1   MGSLAKKGLNNYVKQLQQHPLRTKVITAGVLSAISDVVSQKLTGIQKIQLKRLLFKVIFG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
            AY GPFGH  HLILDKIFKGK+D+ TVAKKV++EQLTS+PWNNL+FMIYYG+VVEG+
Sbjct: 61  AAYPGPFGHLFHLILDKIFKGKRDSKTVAKKVLIEQLTSNPWNNLLFMIYYGLVVEGQ 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113703|ref|XP_002316547.1| predicted protein [Populus trichocarpa] gi|222859612|gb|EEE97159.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 115/118 (97%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKKGLQQY++QLQQHPLRTKAITAGVLSA+SDIV+QKL+GIQKLQ++R+LLKVLFG
Sbjct: 1   MGSVAKKGLQQYMLQLQQHPLRTKAITAGVLSALSDIVSQKLSGIQKLQIKRILLKVLFG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
             YLGPFGH+LH++LDK+FKGKKDT+TVAKKV +EQLT+SPWNNL+FM+YYG+V++G+
Sbjct: 61  FGYLGPFGHYLHILLDKLFKGKKDTTTVAKKVAVEQLTASPWNNLVFMVYYGMVIDGR 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433976|ref|XP_004134772.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 103/118 (87%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKK L +YL QL  HPLRTK IT+GVL A+SD+ +QKLTGIQKLQL+R+LLKVL+G
Sbjct: 1   MGSLAKKALNKYLSQLNHHPLRTKVITSGVLVALSDVTSQKLTGIQKLQLKRILLKVLYG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
           C YLGPF H+LH ILDKIF GK+DT TVAKKV LEQLT+SPWN+ +F++YYG+++EG+
Sbjct: 61  CLYLGPFAHYLHQILDKIFHGKRDTKTVAKKVALEQLTASPWNHFVFLVYYGLIIEGR 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523477|ref|XP_004168750.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 103/118 (87%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKK L +YL QL  HPLRTK IT+GVL A+SD+ +QKLTGIQKLQL+R+LLKVL+G
Sbjct: 1   MGSLAKKALNKYLSQLNHHPLRTKVITSGVLVALSDVTSQKLTGIQKLQLKRILLKVLYG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
           C YLGPF H+LH ILDKIF GK+DT TVAKKV LEQLT+SPWN+ +F++YYG+++EG+
Sbjct: 61  CLYLGPFAHYLHQILDKIFHGKRDTKTVAKKVALEQLTASPWNHFVFLVYYGLIIEGR 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242064532|ref|XP_002453555.1| hypothetical protein SORBIDRAFT_04g008000 [Sorghum bicolor] gi|241933386|gb|EES06531.1| hypothetical protein SORBIDRAFT_04g008000 [Sorghum bicolor]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 100/115 (86%)

Query: 2   GSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGC 61
           GS+A++  +QYL+QLQQHPLRTK ITAG L+ +SD VAQKL+G QK++ RRLLLK+LFG 
Sbjct: 22  GSLARRAWRQYLLQLQQHPLRTKMITAGCLAGVSDTVAQKLSGYQKIEKRRLLLKMLFGF 81

Query: 62  AYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVE 116
           AY GPFGHFLH ILD IF+GKKDT T+AKKV+LEQ+TSSPWNN++F+ YYG VVE
Sbjct: 82  AYGGPFGHFLHKILDYIFQGKKDTKTIAKKVLLEQVTSSPWNNILFLFYYGYVVE 136

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458842|ref|XP_004147155.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 102/118 (86%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           M SI  +  Q YL+QLQ++PLRTKAITAGVL+ ISD VAQK++GI+KLQ RRLLL +L+G
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
            AY GPFGHFLH ++D+IFKGKK  +TVAKKV+LEQ+TSSPWNNL FM+YYG+VVEG+
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNNLFFMMYYGLVVEGR 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413936722|gb|AFW71273.1| peroxisomal membrane protein PMP22 [Zea mays]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 100/116 (86%)

Query: 3   SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCA 62
           S+A++  +QYL+QLQQHPLRTK ITAG L+ +SD VAQKL+G QK++ RRLLLK+LFG A
Sbjct: 21  SLARRAWRQYLLQLQQHPLRTKMITAGCLAGVSDSVAQKLSGFQKIEKRRLLLKMLFGFA 80

Query: 63  YLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
           Y GPFGHFLH ILD IF+GKKDT T+AKKV+LEQ+TSSPWNN++F+ YYG VVE +
Sbjct: 81  YGGPFGHFLHKILDYIFQGKKDTKTIAKKVLLEQVTSSPWNNILFLFYYGYVVERR 136

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195628060|gb|ACG35860.1| peroxisomal membrane protein PMP22 [Zea mays]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 100/116 (86%)

Query: 3   SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCA 62
           S+A++  +QYL+QLQQHPLRTK ITAG L+ +SD VAQKL+G QK++ RRLLLK+LFG A
Sbjct: 21  SLARRAWRQYLLQLQQHPLRTKMITAGCLAGVSDSVAQKLSGFQKIEKRRLLLKMLFGFA 80

Query: 63  YLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
           Y GPFGHFLH ILD IF+GKKDT T+AKKV+LEQ+TSSPWNN++F+ YYG VVE +
Sbjct: 81  YGGPFGHFLHKILDYIFQGKKDTKTIAKKVLLEQVTSSPWNNILFLFYYGYVVERR 136

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:1009023385	185	AT4G14305 "AT4G14305" [Arabido	0.918	0.670	0.598	4.4e-36
TAIR|locus:2137124	190	PMP22 [Arabidopsis thaliana (t	0.859	0.610	0.652	1.3e-34
DICTYBASE|DDB_G0290223	184	DDB_G0290223 "pmp22 family pro	0.762	0.559	0.330	2e-10
MGI|MGI:107487	194	Pxmp2 "peroxisomal membrane pr	0.962	0.670	0.262	4.1e-10
ASPGD|ASPL0000063859	252	AN7258 [Emericella nidulans (t	0.851	0.456	0.308	5.2e-10
UNIPROTKB|G3V9N2	194	Pxmp2 "Peroxisomal membrane pr	0.962	0.670	0.270	1.1e-09
TAIR|locus:2091767	235	AT3G24570 "AT3G24570" [Arabido	0.444	0.255	0.393	3.9e-09
RGD|61812	194	Pxmp2 "peroxisomal membrane pr	0.948	0.659	0.266	7.6e-09
TAIR|locus:2167816	254	AT5G43140 "AT5G43140" [Arabido	0.8	0.425	0.303	7.8e-09
UNIPROTKB|Q2KIY1	196	PXMP2 "Peroxisomal membrane pr	0.8	0.551	0.264	1.6e-08

TAIR|locus:1009023385 AT4G14305 "AT4G14305" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 76/127 (59%), Positives = 93/127 (73%)

Query:     1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXVLFG 60
             M  +AK   ++YLIQLQ HPLRTKAITAGVL+  SD +AQK++G+           +L+G
Sbjct:     1 MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query:    61 CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEG--- 117
              AY GPFGHF H ++D IFKGKK  STVAKKV+LEQLTSSPWNN +FM YYG+VVEG   
Sbjct:    61 FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPW 120

Query:   118 KLILHNI 124
             KL+ H +
Sbjct:   121 KLVKHKL 127

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2137124 PMP22 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 77/118 (65%), Positives = 88/118 (74%)

Query:     1 MGSIAKKG--LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXVL 58
             MGS   K   LQ+YL QLQQHPLRTKAITAGVLS +SD+V+QKL+GI           V+
Sbjct:     1 MGSSPPKKTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVI 60

Query:    59 FGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVE 116
             F   +LGP GHF H  LDK FKGKKDT TVAKKV+LEQLT SP N+L+FMIYYGVV+E
Sbjct:    61 FAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIE 118

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IDA

DICTYBASE|DDB_G0290223 DDB_G0290223 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 36/109 (33%), Positives = 60/109 (55%)

Query:    12 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXVLFGCAYLGPFGHFL 71
             Y+ +L+  P++TKA+T+  LS IS +VAQK                ++G     P  H+ 
Sbjct:    17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLIS-SPLVHYW 75

Query:    72 HLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGK 118
             H+ILD++FK  KD      K++++QL  +P+ N+ F   Y V  +++GK
Sbjct:    76 HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAF---YSVLAILDGK 121

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:107487 Pxmp2 "peroxisomal membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 36/137 (26%), Positives = 73/137 (53%)

Query:     1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-----GIXXXXXXXXXX 55
             +GS+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +                  
Sbjct:    14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLR 73

Query:    56 XVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVV 115
              +++G    GP  H+L+L ++     +   ++V K+++L++L  +P   L+F     ++ 
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASV-KRLLLDRLFFAPTFLLLFFFVMNLL- 131

Query:   116 EGKLILHNIINFTFGRW 132
             EGK +   +     G W
Sbjct:   132 EGKNVSVFVAKMRSGFW 148

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

ASPGD|ASPL0000063859 AN7258 [Emericella nidulans (taxid:162425)]

 Score = 145 (56.1 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 37/120 (30%), Positives = 56/120 (46%)

Query:     9 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXV----LFGCAYL 64
             L  YL QLQ +PLRTK +T+GVLS+  + +A  L              V    L+G    
Sbjct:    48 LALYLRQLQSNPLRTKMLTSGVLSSAQEFLASYLANDVSKHGHYFSSRVPKMLLYGMFIS 107

Query:    65 GPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNI 124
              P GH L  IL K+F G+        +++   L  SP  N++++    ++  G   LH +
Sbjct:   108 APLGHVLVGILQKVFAGRTSLKAKVLQILASNLIVSPIQNVVYLTCMAIIA-GARTLHQV 166

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3V9N2 Pxmp2 "Peroxisomal membrane protein 2, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 37/137 (27%), Positives = 72/137 (52%)

Query:     1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-----GIXXXXXXXXXX 55
             +GS+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +                  
Sbjct:    14 LGSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query:    56 XVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVV 115
              +++G    GP  H+L+L ++     +   + V K+++L++L  +P   L+F     ++ 
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAPTFLLLFFFVMNLL- 131

Query:   116 EGKLILHNIINFTFGRW 132
             EGK I   +     G W
Sbjct:   132 EGKNISVFVAKMRSGFW 148

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

TAIR|locus:2091767 AT3G24570 "AT3G24570" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
 Identities = 26/66 (39%), Positives = 34/66 (51%)

Query:    58 LFGCAYLGPFGHFLHLILDKIFKGK-----KDTSTVAKKVVLEQLTSSPWNNLMFMIYYG 112
             +FG  ++GP GHF +  LDK  K K     K T  VA KV ++ L   P + L+F  Y G
Sbjct:    85 MFGFGFVGPVGHFWYEGLDKFIKLKLRYVPKSTRFVAAKVAMDGLIFGPVDLLVFFTYMG 144

Query:   113 VVVEGK 118
                 GK
Sbjct:   145 FAT-GK 149

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

RGD|61812 Pxmp2 "peroxisomal membrane protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query:     3 SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-----GIXXXXXXXXXXXV 57
             S+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +                   +
Sbjct:    16 SLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYL 75

Query:    58 LFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEG 117
             ++G    GP  H+L+L ++     +   + V K+++L++L  +P   L+F     ++ EG
Sbjct:    76 VYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAPTFLLLFFFVMNLL-EG 133

Query:   118 KLILHNIINFTFGRW 132
             K I   +     G W
Sbjct:   134 KNISVFVAKMRSGFW 148

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=ISO;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=TAS

GO:0043234 "protein complex" evidence=ISO

TAIR|locus:2167816 AT5G43140 "AT5G43140" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 34/112 (30%), Positives = 54/112 (48%)

Query:     9 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT--GIXXXXXXXXXXXVLFGCAYLGP 66
             L+ YL +L+ HP  TK+IT  V+   +D+ +Q +T                 FG  +LGP
Sbjct:    79 LRWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIRTARMASFGLIFLGP 138

Query:    67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
               H     L KI   K+D  T  KK+++ Q+   P +N +F  Y    ++G+
Sbjct:   139 SQHLWFSYLSKILP-KRDVLTTFKKIMMGQVLFGPVSNTVFYSY-NAALQGE 188

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q2KIY1 PXMP2 "Peroxisomal membrane protein 2" [Bos taurus (taxid:9913)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/117 (26%), Positives = 65/117 (55%)

Query:     1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXV--- 57
             +G + ++ L QYL  L+ +P+ TKA T+G+LSA+ + +AQ +              V   
Sbjct:    14 LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP 73

Query:    58 ----LFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP-WNNLMFMI 109
                 ++G  + GP GHF +L++++    +   + + K+++L++L  +P + +L F++
Sbjct:    74 LRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGI-KRLLLDRLLFAPAFLSLFFLV 129

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZS51	PMP22_ARATH	No assigned EC number	0.7288	0.8592	0.6105	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG1944	222	consensus Peroxisomal membrane protein MPV17 and r	99.93
PF04117	68	Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR0	96.83

>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]

Probab=99.93  E-value=5.1e-26  Score=172.84  Aligned_cols=117  Identities=36%  Similarity=0.527  Sum_probs=110.0

Q ss_pred             HhhCchHHHHHHHHHHH-HHHHHHHHHHhcc-----ccchhHHHHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCHHHHH
Q 032703           16 LQQHPLRTKAITAGVLS-AISDIVAQKLTGI-----QKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVA   89 (135)
Q Consensus        16 l~~~Pl~tk~it~~~l~-~~gD~laQ~~~~~-----~~~D~~R~~~~~~~G~~~~gP~~~~wy~~L~~~~~~~~~~~~~~   89 (135)
                      ...+|+.+++++++.+. .+||+++|.++.+     +.+|+.|++||+++|+++.||.+|+||+.||+.+|. ++..+++
T Consensus        46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~-~~~~~~~  124 (222)
T KOG1944|consen   46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPK-KTLITVV  124 (222)
T ss_pred             hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccC-ccHHHHH
Confidence            45689899999888888 9999999998753     468999999999999999999999999999999999 8999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcccCCC
Q 032703           90 KKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNIINFTFGRWNH  134 (135)
Q Consensus        90 ~Kv~~DQ~i~~P~~~~~f~~~~~~~leg~~~~~~~~~lr~~~w~~  134 (135)
                      +|++.||++++|+++.+||.+++ ++||++.+++.++++++|||+
T Consensus       125 ~kvl~dql~~~P~~~~~ff~~~~-~legk~~~~~~~~~~~~~~p~  168 (222)
T KOG1944|consen  125 KKVLLDQLVFAPLFIVVFFLLMG-LLEGKTNEEAKAKLKRKFWPT  168 (222)
T ss_pred             HHHHHhhhhhchHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 999999999999999999986

>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes

Probab=96.83  E-value=0.00017  Score=44.88  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             HHHHhcCCCHHHHHHHHhcccCCCC
Q 032703          111 YGVVVEGKLILHNIINFTFGRWNHW  135 (135)
Q Consensus       111 ~~~~leg~~~~~~~~~lr~~~w~~~  135 (135)
                      |+ ++||+|++++++++|++||+++
T Consensus         1 Mg-~l~g~s~~~~~~~l~~~~~~~~   24 (68)
T PF04117_consen    1 MG-LLEGKSWEEIKEKLKRDYWPTL   24 (68)
T ss_pred             CC-cccCCCHHHHHHHHHHHHHHHH
Confidence            46 8999999999999999999863

PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00