Citrus Sinensis ID: 032720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL
Secondary Structure (PSIPRED)
cccEEEEEEEEcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MATTACFIIVsrneipiyeaevgsavkreDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLhdsrnddgiKSFFQEVHELYIKILlnplylpgsritsshFDTKVRALARKYL
Flexible Loop (DISEMBL)
mattacfiivsrneipiyEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPgsritsshfdtkVRALARKYL
Low Complexity Region (SEG)
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL
Disordered region (IsUnstruct)
***TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFD***********
Disordered Region (DISOPRED)
*ATTACFIIVSRNEIPIYEAEVG********AQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL
Disordered Region (DISEMBL)
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL
Disordered Region (DISPRO)
*ATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
F1SRI0	140	Trafficking protein parti	yes	no	1.0	0.964	0.478	5e-34
Q3T0F2	140	Trafficking protein parti	yes	no	1.0	0.964	0.478	5e-34
Q9CQP2	140	Trafficking protein parti	yes	no	1.0	0.964	0.478	5e-34
Q5RES6	140	Trafficking protein parti	yes	no	1.0	0.964	0.478	6e-34
E2QV03	140	Trafficking protein parti	yes	no	1.0	0.964	0.478	6e-34
P0DI82	140	Trafficking protein parti	yes	no	1.0	0.964	0.478	8e-34
P0DI81	140	Trafficking protein parti	yes	no	1.0	0.964	0.478	8e-34
Q54RV6	133	Trafficking protein parti	yes	no	0.977	0.992	0.466	1e-32
Q9USZ5	136	Transport protein particl	yes	no	0.977	0.970	0.474	2e-32
D3ZVF4	140	Trafficking protein parti	yes	no	1.0	0.964	0.442	2e-31

>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Sus scrofa (taxid: 9823)

>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1

 Score =  142 bits (358), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Pongo abelii (taxid: 9601)

>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris GN=TRAPPC2 PE=3 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Canis familiaris (taxid: 9615)

>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1 OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1

 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents transcriptional repression and induction of cell death by ENO1. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens GN=TRAPPC2 PE=1 SV=1

 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents transcriptional repression and induction of cell death by ENO1 (By similarity). May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q54RV6|TPPC2_DICDI Trafficking protein particle complex subunit 2 OS=Dictyostelium discoideum GN=trappc2 PE=3 SV=1

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 94/133 (70%), Gaps = 1/133 (0%)

Query: 3   TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAID 62
           +T  F+I+ +N+ P+YE E    V++++   L Q+I H +LDIV++  W ++ M+LK ID
Sbjct: 2   STFTFLIIGKNDNPLYEIEFPITVQKKETYVL-QYIAHGSLDIVEEHVWKSNNMYLKIID 60

Query: 63  RFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSH 122
           +FN + +S +VTAGH +F+LLH+ +++D IK+FF EVH+LY+KILLNP Y     ITS+ 
Sbjct: 61  KFNKVQISSFVTAGHIKFLLLHEKKDEDAIKNFFVEVHDLYLKILLNPFYEYNKPITSTA 120

Query: 123 FDTKVRALARKYL 135
           FD KVR +  KY 
Sbjct: 121 FDAKVRKIGTKYF 133

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 94/135 (69%), Gaps = 3/135 (2%)

Query: 4   TACFIIVSRNEIPIYEAEVGSAVKRED---AAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           TA   I+   + P+YE E+G   ++ D    + L+QFI+H++LDIV  L WT++A ++K 
Sbjct: 2   TAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQWTSNAFYMKT 61

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           ID+F+++ +S YVT  + RFMLLH +++ D IK FFQE+HELYIK L++P Y P   I S
Sbjct: 62  IDQFHEMYISAYVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQPIRS 121

Query: 121 SHFDTKVRALARKYL 135
             FD KVR++AR+YL
Sbjct: 122 QAFDLKVRSIARRYL 136

Component of the TRAPP I and TRAPP II complexes. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II seems to play a role in intra-Golgi transport.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus GN=Trappc2 PE=3 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 94/138 (68%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G    +++   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKTESKDEHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRLIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 118 ITSSHFDTKVRALARKYL 135
           I S+ F+ KV+ L +K+L
Sbjct: 121 IRSTAFERKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
224075712	135	predicted protein [Populus trichocarpa]	1.0	1.0	0.962	1e-71
449459192	135	PREDICTED: trafficking protein particle	1.0	1.0	0.940	2e-70
224115772	135	predicted protein [Populus trichocarpa]	1.0	1.0	0.948	5e-70
145337812	135	SNARE-like protein [Arabidopsis thaliana	1.0	1.0	0.933	1e-69
356516409	135	PREDICTED: trafficking protein particle	1.0	1.0	0.933	2e-69
351724257	135	uncharacterized protein LOC100527093 [Gl	1.0	1.0	0.933	4e-69
119720824	135	putative TRAPP subunit [Brassica rapa]	1.0	1.0	0.918	4e-69
388505728	135	unknown [Lotus japonicus]	1.0	1.0	0.918	1e-68
388511673	135	unknown [Lotus japonicus]	1.0	1.0	0.911	1e-68
297842817	144	predicted protein [Arabidopsis lyrata su	1.0	0.937	0.875	4e-67

>gi|224075712|ref|XP_002304731.1| predicted protein [Populus trichocarpa] gi|222842163|gb|EEE79710.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/135 (96%), Positives = 134/135 (99%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVGSA KREDAAQ+HQFILHAALDIVQDLAWTTSAM+LKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSATKREDAAQMHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           IDRFND+VVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS
Sbjct: 61  IDRFNDMVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459192|ref|XP_004147330.1| PREDICTED: trafficking protein particle complex subunit 2-like [Cucumis sativus] gi|449508705|ref|XP_004163387.1| PREDICTED: trafficking protein particle complex subunit 2-like [Cucumis sativus]

 Score =  269 bits (688), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/135 (94%), Positives = 132/135 (97%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK +LNPLYLPGSR+TS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115772|ref|XP_002332053.1| predicted protein [Populus trichocarpa] gi|222831939|gb|EEE70416.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 128/135 (94%), Positives = 132/135 (97%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSR++IPIYEAEVGSA KREDAAQ+HQFILHAALDIVQDLAWTTSAM+LKA
Sbjct: 1   MATTACFIIVSRDDIPIYEAEVGSATKREDAAQMHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           IDRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRI S
Sbjct: 61  IDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRIAS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145337812|ref|NP_178165.2| SNARE-like protein [Arabidopsis thaliana] gi|332198292|gb|AEE36413.1| SNARE-like protein [Arabidopsis thaliana]

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/135 (93%), Positives = 131/135 (97%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           MA TACFIIV RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct: 1   MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRN+DGIKSFFQEVHELYIKILLNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516409|ref|XP_003526887.1| PREDICTED: trafficking protein particle complex subunit 2-like [Glycine max]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/135 (93%), Positives = 132/135 (97%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVG A KRED+AQLHQFILHAALDIVQDLAWTTSAM+LK+
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGVAAKREDSAQLHQFILHAALDIVQDLAWTTSAMYLKS 60

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           +DRFN+LVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIK LLNPLYLPGSRITS
Sbjct: 61  VDRFNELVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724257|ref|NP_001238587.1| uncharacterized protein LOC100527093 [Glycine max] gi|255631540|gb|ACU16137.1| unknown [Glycine max]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 126/135 (93%), Positives = 131/135 (97%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVG A KREDAAQLHQFILHAALDIVQDLAWTTSAM+LK+
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKS 60

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           +DRFN+LVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK LLNPLYLPGSRITS
Sbjct: 61  VDRFNELVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119720824|gb|ABL97982.1| putative TRAPP subunit [Brassica rapa]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 124/135 (91%), Positives = 132/135 (97%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           MA TACF+IV+RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct: 1   MANTACFMIVARNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRN+DGIKSFFQEVHELYIKILLNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 135
           +HFDTKVRALARKYL
Sbjct: 121 THFDTKVRALARKYL 135

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505728|gb|AFK40930.1| unknown [Lotus japonicus]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/135 (91%), Positives = 131/135 (97%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVG A KREDAAQLHQFILHAALD+VQDLAWTTSAM+LK+
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS 60

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           +DRFN+LVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQ+VHELYIK LLNPLYLPGSRITS
Sbjct: 61  VDRFNELVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQDVHELYIKTLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKY 
Sbjct: 121 SHFDTKVRALARKYF 135

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511673|gb|AFK43898.1| unknown [Lotus japonicus]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/135 (91%), Positives = 131/135 (97%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVG A KREDAAQLHQFILHAALD+VQDLAWTTSAM+LK+
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS 60

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           +DRFN+LVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQ+VHELYIK LLNPLYLPGSR+TS
Sbjct: 61  VDRFNELVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQDVHELYIKTLLNPLYLPGSRVTS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKY 
Sbjct: 121 SHFDTKVRALARKYF 135

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842817|ref|XP_002889290.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335131|gb|EFH65549.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  259 bits (661), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 126/144 (87%), Positives = 131/144 (90%), Gaps = 9/144 (6%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVK---------REDAAQLHQFILHAALDIVQDLAW 51
           MA TACFIIV RN+IPIYEAEVGSA K         REDAAQLHQFILHAALD+VQDLAW
Sbjct: 1   MANTACFIIVGRNDIPIYEAEVGSAAKLTPILSIWQREDAAQLHQFILHAALDVVQDLAW 60

Query: 52  TTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPL 111
           TTSAMFLK++DRFNDLVVSVYVTAGHTR MLLHDSRN+DGIKSFFQEVHELYIKILLNPL
Sbjct: 61  TTSAMFLKSVDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKILLNPL 120

Query: 112 YLPGSRITSSHFDTKVRALARKYL 135
           YLPGSRITSSHFDTKVRALARKYL
Sbjct: 121 YLPGSRITSSHFDTKVRALARKYL 144

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2198983	135	AT1G80500 "AT1G80500" [Arabido	1.0	1.0	0.933	3.7e-64
UNIPROTKB|Q3T0F2	140	TRAPPC2 "Trafficking protein p	1.0	0.964	0.478	7.7e-32
UNIPROTKB|E2QV03	140	TRAPPC2 "Trafficking protein p	1.0	0.964	0.478	7.7e-32
UNIPROTKB|F1SRI0	140	TRAPPC2 "Trafficking protein p	1.0	0.964	0.478	7.7e-32
UNIPROTKB|P0DI81	140	TRAPPC2 "Trafficking protein p	1.0	0.964	0.478	9.8e-32
UNIPROTKB|P0DI82	140	TRAPPC2P1 "Trafficking protein	1.0	0.964	0.478	9.8e-32
RGD|1306925	140	Trappc2 "trafficking protein p	1.0	0.964	0.478	9.8e-32
DICTYBASE|DDB_G0282887	133	trappc2 "trafficking protein p	0.970	0.984	0.469	1.4e-30
POMBASE|SPBC11G11.04	136	trs20 "TRAPP complex subunit T	0.977	0.970	0.474	1.4e-30
UNIPROTKB|G5EA75	144	TRAPPC2 "Trafficking protein p	1.0	0.937	0.464	3e-30

TAIR|locus:2198983 AT1G80500 "AT1G80500" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 126/135 (93%), Positives = 131/135 (97%)

Query:     1 MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
             MA TACFIIV RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct:     1 MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query:    61 IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
             +DRFNDLVVSVYVTAGHTR MLLHDSRN+DGIKSFFQEVHELYIKILLNPLYLPGSRITS
Sbjct:    61 VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query:   121 SHFDTKVRALARKYL 135
             SHFDTKVRALARKYL
Sbjct:   121 SHFDTKVRALARKYL 135

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q3T0F2 TRAPPC2 "Trafficking protein particle complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 66/138 (47%), Positives = 96/138 (69%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
             LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query:   118 ITSSHFDTKVRALARKYL 135
             I SS FD KV+ L +K+L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2QV03 TRAPPC2 "Trafficking protein particle complex subunit 2" [Canis lupus familiaris (taxid:9615)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 66/138 (47%), Positives = 96/138 (69%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
             LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query:   118 ITSSHFDTKVRALARKYL 135
             I SS FD KV+ L +K+L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1SRI0 TRAPPC2 "Trafficking protein particle complex subunit 2" [Sus scrofa (taxid:9823)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 66/138 (47%), Positives = 96/138 (69%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
             LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query:   118 ITSSHFDTKVRALARKYL 135
             I SS FD KV+ L +K+L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|P0DI81 TRAPPC2 "Trafficking protein particle complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 66/138 (47%), Positives = 96/138 (69%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
             LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query:   118 ITSSHFDTKVRALARKYL 135
             I SS FD KV+ L +K+L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0001501 "skeletal system development" evidence=IMP

GO:0044325 "ion channel binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|P0DI82 TRAPPC2P1 "Trafficking protein particle complex subunit 2 protein TRAPPC2P1" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 66/138 (47%), Positives = 96/138 (69%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
             LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query:   118 ITSSHFDTKVRALARKYL 135
             I SS FD KV+ L +K+L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

RGD|1306925 Trappc2 "trafficking protein particle complex 2" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 66/138 (47%), Positives = 96/138 (69%)

Query:     1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
             LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query:   118 ITSSHFDTKVRALARKYL 135
             I SS FD KV+ L +K+L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0001501 "skeletal system development" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030008 "TRAPP complex" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

DICTYBASE|DDB_G0282887 trappc2 "trafficking protein particle complex subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 62/132 (46%), Positives = 94/132 (71%)

Query:     3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAID 62
             +T  F+I+ +N+ P+YE E    V++++   L Q+I H +LDIV++  W ++ M+LK ID
Sbjct:     2 STFTFLIIGKNDNPLYEIEFPITVQKKETYVL-QYIAHGSLDIVEEHVWKSNNMYLKIID 60

Query:    63 RFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSH 122
             +FN + +S +VTAGH +F+LLH+ +++D IK+FF EVH+LY+KILLNP Y     ITS+ 
Sbjct:    61 KFNKVQISSFVTAGHIKFLLLHEKKDEDAIKNFFVEVHDLYLKILLNPFYEYNKPITSTA 120

Query:   123 FDTKVRALARKY 134
             FD KVR +  KY
Sbjct:   121 FDAKVRKIGTKY 132

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC11G11.04 trs20 "TRAPP complex subunit Trs20 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/135 (47%), Positives = 94/135 (69%)

Query:     4 TACFIIVSRNEIPIYEAEVGSAVKREDAA---QLHQFILHAALDIVQDLAWTTSAMFLKA 60
             TA   I+   + P+YE E+G   ++ D +    L+QFI+H++LDIV  L WT++A ++K 
Sbjct:     2 TAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQWTSNAFYMKT 61

Query:    61 IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
             ID+F+++ +S YVT  + RFMLLH +++ D IK FFQE+HELYIK L++P Y P   I S
Sbjct:    62 IDQFHEMYISAYVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQPIRS 121

Query:   121 SHFDTKVRALARKYL 135
               FD KVR++AR+YL
Sbjct:   122 QAFDLKVRSIARRYL 136

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IC

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0030008 "TRAPP complex" evidence=ISO

GO:0032313 "regulation of Rab GTPase activity" evidence=IC

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

UNIPROTKB|G5EA75 TRAPPC2 "Trafficking protein particle complex subunit 2" [Sus scrofa (taxid:9823)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 66/142 (46%), Positives = 96/142 (67%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHT----RFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYL 113
             LK +D+FN+  VS +VTAGH     RF++LHD R +DGIK+FF +V++LYIK  +NP Y 
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHILIYMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYE 120

Query:   114 PGSRITSSHFDTKVRALARKYL 135
             P S I SS FD KV+ L +K+L
Sbjct:   121 PNSPIRSSAFDRKVQFLGKKHL 142

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZKP4	TPPC2_CHICK	No assigned EC number	0.4347	1.0	0.9642	yes	no
Q08CN0	TPPC2_DANRE	No assigned EC number	0.4347	1.0	0.9642	yes	no
Q54RV6	TPPC2_DICDI	No assigned EC number	0.4661	0.9777	0.9924	yes	no
Q9USZ5	TRS20_SCHPO	No assigned EC number	0.4740	0.9777	0.9705	yes	no
E2QV03	TPPC2_CANFA	No assigned EC number	0.4782	1.0	0.9642	yes	no
O02173	TPPC2_CAEEL	No assigned EC number	0.4436	0.9555	0.9148	yes	no
D3ZVF4	TPPC2_RAT	No assigned EC number	0.4420	1.0	0.9642	yes	no
Q9VUZ1	TPPC2_DROME	No assigned EC number	0.4558	0.9851	0.9568	yes	no
F1SRI0	TPPC2_PIG	No assigned EC number	0.4782	1.0	0.9642	yes	no
P0DI82	TPC2B_HUMAN	No assigned EC number	0.4782	1.0	0.9642	yes	no
Q3T0F2	TPPC2_BOVIN	No assigned EC number	0.4782	1.0	0.9642	yes	no
Q5RES6	TPPC2_PONAB	No assigned EC number	0.4782	1.0	0.9642	yes	no
P0DI81	TPC2A_HUMAN	No assigned EC number	0.4782	1.0	0.9642	yes	no
Q9CQP2	TPPC2_MOUSE	No assigned EC number	0.4782	1.0	0.9642	yes	no
Q28IG8	TPPC2_XENTR	No assigned EC number	0.4420	1.0	0.9642	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	3e-60
COG5603	136	COG5603, TRS20, Subunit of TRAPP, an ER-Golgi teth	1e-37
pfam04099	135	pfam04099, Sybindin, Sybindin-like family	2e-04

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score =  181 bits (461), Expect = 3e-60
 Identities = 68/127 (53%), Positives = 84/127 (66%), Gaps = 2/127 (1%)

Query: 9   IVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLV 68
           I+ + + P+YE E  S  K      L+QFI HA+LDIV++L W T+ M+L  +D FNDL 
Sbjct: 1   IIGKKDNPLYEQEFSSEGKTSIPKHLNQFIAHASLDIVEELQWKTNNMYLGLVDSFNDLA 60

Query: 69  VSVYVTAGHTRFMLLHDS--RNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTK 126
           VS YVT  H +F+LLHDS    DD IK FF+EVHELYIK L+NP Y P   I S  FD K
Sbjct: 61  VSGYVTNTHIKFILLHDSSTERDDDIKQFFREVHELYIKTLMNPFYEPNDPIRSPAFDAK 120

Query: 127 VRALARK 133
           VR LA+K
Sbjct: 121 VRRLAKK 127

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

>gnl|CDD|227890 COG5603, TRS20, Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

 Score =  124 bits (312), Expect = 1e-37
 Identities = 50/135 (37%), Positives = 71/135 (52%), Gaps = 3/135 (2%)

Query: 4   TACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
                I+   + P+YE E     K    E    L+QFI+HA+LDIV  L W+ +  +   
Sbjct: 2   GEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDC 61

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
           +D F DL +S Y+     +F+ +H +++    +SF QEVHELY K L++P Y P   I S
Sbjct: 62  LDSFGDLRISAYIMPSGMKFLFIHQNQSRKNARSFLQEVHELYAKTLMSPFYEPDEPIRS 121

Query: 121 SHFDTKVRALARKYL 135
             FD  VR  AR  L
Sbjct: 122 QAFDDGVREAARVCL 136

Length = 136

>gnl|CDD|146632 pfam04099, Sybindin, Sybindin-like family

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 78  TRFMLLHDSRNDDGIKSFFQEVHELYIKILL-NPLYLPGSRITSSHFDTKVRALAR 132
            +F+L+ D        S  ++ +ELY   +L NP Y     I    FD K+    R
Sbjct: 78  IKFVLVTDPGTGPNRDSLLRKYYELYSDYVLKNPFYSLEMPIRCELFDEKLDQYVR 133

Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	100.0
KOG3487	139	consensus TRAPP 20 K subunit [Intracellular traffi	100.0
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	100.0
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	99.98
KOG3444	121	consensus Uncharacterized conserved protein [Funct	99.97
KOG3369	199	consensus Transport protein particle (TRAPP) compl	99.97
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	99.92
KOG3368	140	consensus Transport protein particle (TRAPP) compl	99.91
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	94.98
KOG0861	198	consensus SNARE protein YKT6, synaptobrevin/VAMP s	82.96
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	80.76

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=100.00  E-value=5.4e-43  Score=249.05  Aligned_cols=125  Identities=46%  Similarity=0.800  Sum_probs=107.3

Q ss_pred             EEcCCCCeeEEEecCCCcccc--chHHHHHHHHHhcchhhhhhhcc-ccccccceeeeecceEEEEEEecCCeEEEEEec
Q 032720            9 IVSRNEIPIYEAEVGSAVKRE--DAAQLHQFILHAALDIVQDLAWT-TSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHD   85 (135)
Q Consensus         9 Ii~~~~~ply~~~~~~~~~~~--~~~~~~~~~~~~sLD~i~~~~~~-~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~   85 (135)
                      |||++|+|||+++|++++...  .....+||++|+|||+||+++|. ++++|||.|+++++|+||||+|+||+|||++++
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~   80 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD   80 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred             CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence            899999999999998654322  13455899999999999999999 999999999999999999999999999999999


Q ss_pred             ----CCCchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHh
Q 032720           86 ----SRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARK  133 (135)
Q Consensus        86 ----~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~  133 (135)
                          ..++++||+||++||++|++++|||||++++||+|+.|+++|+++++|
T Consensus        81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~~~~~I~S~~Fd~~v~~l~~k  132 (132)
T PF04628_consen   81 MSDNSIRDEDIKQFFKEVHELYVKALCNPFYQPGTPIKSPKFDSRVRALAKK  132 (132)
T ss_dssp             GGG-S--HHHHHHHHHHHHHHHHHHHTSTTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHHHHHHHHHHHHccCCCCCCCCCcCCHHHHHHHHHHhcC
Confidence                457999999999999999999999999999999999999999999987

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-40  Score=229.57  Aligned_cols=133  Identities=57%  Similarity=0.930  Sum_probs=125.3

Q ss_pred             CCceEEEEEEcCCCCeeEEEecCCCc----cccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecC
Q 032720            1 MATTACFIIVSRNEIPIYEAEVGSAV----KREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAG   76 (135)
Q Consensus         1 m~~i~~l~Ii~~~~~ply~~~~~~~~----~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~t   76 (135)
                      |++  |++|||+.+.|+|+-+|+.++    .++++..++||++|||||++||.+|.++++|||.+|+++++-|++|+|++
T Consensus         1 m~~--yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas   78 (139)
T KOG3487|consen    1 MTA--YFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTAS   78 (139)
T ss_pred             Cce--EEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccC
Confidence            445  999999999999999998443    25567899999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCCchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHhhC
Q 032720           77 HTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL  135 (135)
Q Consensus        77 g~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~  135 (135)
                      ++||++++..+.+++++.||+++|++|++.+|||||++++||+|+.||.+++.+++|||
T Consensus        79 ~i~f~mlh~~~~~~~ik~Ffqev~elyik~lmnpFy~~~dpirs~afd~kv~~~~rkhl  137 (139)
T KOG3487|consen   79 HIRFIMLHINRADDNIKLFFQEVHELYIKTLMNPFYEINDPIRSPAFDHKVRGLARKHL  137 (139)
T ss_pred             cEEEEEEeeccccccHHHHHHHHHHHHHHHHhCcccccCCccccHHHHHHHHHHHHHHh
Confidence            99999999988899999999999999999999999999999999999999999999997

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=100.00  E-value=5.4e-40  Score=225.44  Aligned_cols=131  Identities=37%  Similarity=0.684  Sum_probs=122.3

Q ss_pred             EEEEEEcCCCCeeEEEecCCCc---cccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeEEE
Q 032720            5 ACFIIVSRNEIPIYEAEVGSAV---KREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFM   81 (135)
Q Consensus         5 ~~l~Ii~~~~~ply~~~~~~~~---~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfv   81 (135)
                      .+++|||++|+|+|+++|+..+   ..+...+++||++|||||++++++|..+.+|+++++.+.+..++||++|+|+||+
T Consensus         3 ~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pSgmkf~   82 (136)
T COG5603           3 EYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPSGMKFL   82 (136)
T ss_pred             ceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccCCceEE
Confidence            4899999999999999998432   2344568899999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHhhC
Q 032720           82 LLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL  135 (135)
Q Consensus        82 l~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~  135 (135)
                      +++.++.++++|.||++||++|++.+|||||++++||+|++||.+|+++++++|
T Consensus        83 ~iH~n~s~~N~rsF~qevHely~ktLmspfy~~~~pirsqafd~~Vr~~ar~~L  136 (136)
T COG5603          83 FIHQNQSRKNARSFLQEVHELYAKTLMSPFYEPDEPIRSQAFDDGVREAARVCL  136 (136)
T ss_pred             EEeccchhhhHHHHHHHHHHHHHHHhhCcccCCCccccchhhhhhHHHHHHhhC
Confidence            999887789999999999999999999999999999999999999999999987

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=99.98  E-value=2.8e-31  Score=191.03  Aligned_cols=129  Identities=17%  Similarity=0.185  Sum_probs=93.8

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCc-----cccchHHHHHHHHHhcchhhhhhhcccc-------ccccceeeeecceEEEE
Q 032720            4 TACFIIVSRNEIPIYEAEVGSAV-----KREDAAQLHQFILHAALDIVQDLAWTTS-------AMFLKAIDRFNDLVVSV   71 (135)
Q Consensus         4 i~~l~Ii~~~~~ply~~~~~~~~-----~~~~~~~~~~~~~~~sLD~i~~~~~~~~-------~~ylg~l~~~~~~~v~~   71 (135)
                      |++++|+||+|++||.++|....     +..+++...-+.+..||..+..+++|.+       ...+.. ..++.|++|+
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~-~~T~~yklh~   79 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFES-FETDTYKLHC   79 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEE-EEESS-EEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEE-EEeCCEEEEE
Confidence            68999999999999999998643     2334444444566569999999998821       123333 3389999999


Q ss_pred             EEecCCeEEEEEecCCCchhHHHHHHHHHHHHHhhhh-CCCCCCCCCcCChhHHHHHHHHHHh
Q 032720           72 YVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILL-NPLYLPGSRITSSHFDTKVRALARK  133 (135)
Q Consensus        72 y~T~tg~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~~v~-NPFy~~~~~I~s~~F~~~v~~~~~~  133 (135)
                      |+|+||+|||+++|++.......+++.+|++|+++|+ ||||.+||||+|+.||++|++++++
T Consensus        80 ~eT~TGlKFvl~td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~  142 (142)
T PF04099_consen   80 FETPTGLKFVLITDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS  142 (142)
T ss_dssp             EE-TTS-EEEEEE-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred             EEcCcCcEEEEEecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence            9999999999999987657788899999999999986 9999999999999999999999874

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3444 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=9.4e-31  Score=177.33  Aligned_cols=108  Identities=26%  Similarity=0.535  Sum_probs=99.0

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhcc-------ccccccceeeeecceEEEEEEecC
Q 032720            4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWT-------TSAMFLKAIDRFNDLVVSVYVTAG   76 (135)
Q Consensus         4 i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~~-------~~~~ylg~l~~~~~~~v~~y~T~t   76 (135)
                      ++|++++|++|+|+|++++..    .++++..|+..|+|||+|+|+.+.       +++.|||.++++++|++|||.|+|
T Consensus         2 ~v~~av~g~kn~~lyi~s~t~----~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNT   77 (121)
T KOG3444|consen    2 LVCLAVAGPKNEPLYIESITP----KEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNT   77 (121)
T ss_pred             EEEEEEEcCCCCccEEEecCc----HHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEecc
Confidence            579999999999999999853    367888899999999999999842       467899999999999999999999


Q ss_pred             CeEEEEEecCC----CchhHHHHHHHHHHHHHhhhhCCCCCCC
Q 032720           77 HTRFMLLHDSR----NDDGIKSFFQEVHELYIKILLNPLYLPG  115 (135)
Q Consensus        77 g~Kfvl~~~~~----~~~~i~~~f~~i~~~Y~~~v~NPFy~~~  115 (135)
                      .+|||+++|.+    +|.+||++|+..|-+|++..|||||-|+
T Consensus        78 kVKFIlvvdssd~avreteiRsv~r~~h~l~td~~~npfy~pg  120 (121)
T KOG3444|consen   78 KVKFILVVDSSDYAVRETEIRSVFRILHLLYTDLSCNPFYLPG  120 (121)
T ss_pred             EEEEEEEEcCCcceehhHHHHHHHHHHHHHHHHheecceeccC
Confidence            99999999865    5899999999999999999999999876

>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.5e-30  Score=185.94  Aligned_cols=90  Identities=20%  Similarity=0.376  Sum_probs=80.6

Q ss_pred             cchhhhhhhccccc-cccceeeeecceEEEEEEecCCeEEEEEecCCCchhHHHHHHHHHHHHHhhhh-CCCCCCCCCcC
Q 032720           42 ALDIVQDLAWTTSA-MFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILL-NPLYLPGSRIT  119 (135)
Q Consensus        42 sLD~i~~~~~~~~~-~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~~v~-NPFy~~~~~I~  119 (135)
                      |+++|.+++++-+. ..+..++ +++|+++||+|.||+|||+++++. ...++.++++||++|+||++ ||||+++||||
T Consensus       106 sl~aI~~qlsp~~ksSGie~Le-tdtF~l~~~QTlTG~KFVvis~~~-~~~aD~lLrKiYelYsDyvlKNPfYSlEMPIR  183 (199)
T KOG3369|consen  106 SLFAISTQLSPEPKSSGIEVLE-TDTFTLHIFQTLTGTKFVVIAEPG-TQGADSLLRKIYELYSDYVLKNPFYSLEMPIR  183 (199)
T ss_pred             chhheeeccCCCCCCCceEEEE-eccEEEEEEEccCCcEEEEEecCC-chhHHHHHHHHHHHHHHHhhcCCccCccccee
Confidence            88999999987554 3455555 899999999999999999999975 68999999999999999997 99999999999


Q ss_pred             ChhHHHHHHHHHHh
Q 032720          120 SSHFDTKVRALARK  133 (135)
Q Consensus       120 s~~F~~~v~~~~~~  133 (135)
                      |++||++++.++.+
T Consensus       184 c~lFDe~lk~~le~  197 (199)
T KOG3369|consen  184 CELFDEKLKFLLES  197 (199)
T ss_pred             HHHhhHHHHHHHhh
Confidence            99999999998865

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=99.92  E-value=7e-25  Score=150.24  Aligned_cols=125  Identities=18%  Similarity=0.349  Sum_probs=93.1

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHh----cchhhhhhhccccc-cccceeeeecceEEEEEEecCCe
Q 032720            4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHA----ALDIVQDLAWTTSA-MFLKAIDRFNDLVVSVYVTAGHT   78 (135)
Q Consensus         4 i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~----sLD~i~~~~~~~~~-~ylg~l~~~~~~~v~~y~T~tg~   78 (135)
                      +=.+.||||+|++||+|+|++..   .+...+++++.+    +..+|..+..+-+. ..+.+++ ++.+.++.|+|.||+
T Consensus         3 ve~~~iINksGglifqref~~~e---t~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~-~~~f~m~I~qT~TG~   78 (134)
T COG5122           3 VEQFFIINKSGGLIFQREFGEGE---TELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLY-FRNFVMTIFQTTTGT   78 (134)
T ss_pred             eeEEEEEecCCcEEEEEeccCCc---cccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEE-eccEEEEEEEecCCc
Confidence            45689999999999999997532   111223343333    34566666655322 2233444 899999999999999


Q ss_pred             EEEEEecCCCchhHHHHHHHHHHHHHhhhh-CCCCCCCCCcCChhHHHHHHHHHHh
Q 032720           79 RFMLLHDSRNDDGIKSFFQEVHELYIKILL-NPLYLPGSRITSSHFDTKVRALARK  133 (135)
Q Consensus        79 Kfvl~~~~~~~~~i~~~f~~i~~~Y~~~v~-NPFy~~~~~I~s~~F~~~v~~~~~~  133 (135)
                      |||++++.+. .+.+--++++|.+|+|||+ ||||+++|||+|.+||+++++++..
T Consensus        79 kFV~~~~k~t-~na~~ql~kiY~lYsdYV~knPfys~EMPI~c~lFde~lkrm~e~  133 (134)
T COG5122          79 KFVFVAEKRT-VNALFQLQKIYSLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEG  133 (134)
T ss_pred             EEEEEecCCc-hhHHHHHHHHHHHHHHHhhcCCCCCcccceehhhhhHHHHHHhcC
Confidence            9999997553 3344447889999999997 9999999999999999999998754

>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3e-23  Score=145.29  Aligned_cols=128  Identities=22%  Similarity=0.309  Sum_probs=108.7

Q ss_pred             CceEEEEEEcCCCCeeEEEecCCCc---cccchHHHHHHHHHhcchhhhhhhccc--cccccceeeeecceEEEEEEecC
Q 032720            2 ATTACFIIVSRNEIPIYEAEVGSAV---KREDAAQLHQFILHAALDIVQDLAWTT--SAMFLKAIDRFNDLVVSVYVTAG   76 (135)
Q Consensus         2 ~~i~~l~Ii~~~~~ply~~~~~~~~---~~~~~~~~~~~~~~~sLD~i~~~~~~~--~~~ylg~l~~~~~~~v~~y~T~t   76 (135)
                      ++|+.++|.+|+|.+||.++|..+.   ...+++...-|.+..||.-+.+++++.  .+.+  .-++|+.|+++.|+|||
T Consensus         1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f--~sy~Ts~YklhfyeTpt   78 (140)
T KOG3368|consen    1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGF--LSYKTSKYKLHFYETPT   78 (140)
T ss_pred             CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCe--eEEeeceeEEEEEEcCC
Confidence            4789999999999999999997432   122333444488888999999999875  3443  34568999999999999


Q ss_pred             CeEEEEEecCCCchhHHHHHHHHHH-HHHhhhh-CCCCC--CCCCcCChhHHHHHHHHHH
Q 032720           77 HTRFMLLHDSRNDDGIKSFFQEVHE-LYIKILL-NPLYL--PGSRITSSHFDTKVRALAR  132 (135)
Q Consensus        77 g~Kfvl~~~~~~~~~i~~~f~~i~~-~Y~~~v~-NPFy~--~~~~I~s~~F~~~v~~~~~  132 (135)
                      |+|||+++|++ ...+|++++.||. +|+++|. ||.++  +++||+|+.|.+++++.++
T Consensus        79 glk~vl~Tdpk-~~~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vr  137 (140)
T KOG3368|consen   79 GLKFVLNTDPK-AGSIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVR  137 (140)
T ss_pred             CcEEEEecCCC-cccHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhc
Confidence            99999999985 7899999999998 9999985 99999  9999999999999999886

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.98  E-value=0.83  Score=32.15  Aligned_cols=94  Identities=15%  Similarity=0.216  Sum_probs=54.8

Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeEEEE
Q 032720            3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFML   82 (135)
Q Consensus         3 ~i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl   82 (135)
                      +|-++.|+|++|++++.|-|...+....+.....+.        ......+++.  ..+...+++++ .|.--+++-|++
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~i~~~~~~~~-vy~~~~dl~~~~   69 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFI--------KKKSSRNSKQ--SPIFEHDNYRI-VYKRYSDLYFVV   69 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHH--------HHHHTSSSSS--TSEEEETTEEE-EEEEETTEEEEE
T ss_pred             CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHH--------HHHHhccccc--ceeeeccccee-eeEeeccEEEEE
Confidence            467999999999999999995432211111111111        1111111111  22223455554 777889999999


Q ss_pred             EecCC-CchhHHHHHHHHHHHHHhhh
Q 032720           83 LHDSR-NDDGIKSFFQEVHELYIKIL  107 (135)
Q Consensus        83 ~~~~~-~~~~i~~~f~~i~~~Y~~~v  107 (135)
                      +++.. ++-.+-++++.+.++.-++.
T Consensus        70 v~~~~eNel~~~e~l~~~v~~l~~~~   95 (141)
T PF01217_consen   70 VGDENENELLLLEFLHRLVEVLDDYF   95 (141)
T ss_dssp             EESSTSBHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccchHHHHHHHHHhhhhhhhhh
Confidence            99854 23355667777777666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.96  E-value=18  Score=27.25  Aligned_cols=97  Identities=8%  Similarity=0.112  Sum_probs=55.6

Q ss_pred             ceEEEEEEcCCCCe--eEEEecCCCcccc-chHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeE
Q 032720            3 TTACFIIVSRNEIP--IYEAEVGSAVKRE-DAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTR   79 (135)
Q Consensus         3 ~i~~l~Ii~~~~~p--ly~~~~~~~~~~~-~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~K   79 (135)
                      -|+++.|+......  |.-..++-+.+.- +.....+|+.+.|=-+.+ +.    +.+..+-.+.++|.+|+|+-+.|+-
T Consensus         2 ki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvae-Rt----~~g~rqsvk~~~Y~~h~yvrndgL~   76 (198)
T KOG0861|consen    2 KIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAE-RT----GPGQRQSVKHEEYLVHVYVRNDGLC   76 (198)
T ss_pred             ceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHH-hc----CcccccccccceeEEEEEEecCCee
Confidence            47888888874333  3332222111100 001133577764433333 22    2233344446899999999999999


Q ss_pred             EEEEecCCC-chhHHHHHHHHHHHHH
Q 032720           80 FMLLHDSRN-DDGIKSFFQEVHELYI  104 (135)
Q Consensus        80 fvl~~~~~~-~~~i~~~f~~i~~~Y~  104 (135)
                      =|+++|..- ....-.++++|-+.|.
T Consensus        77 ~V~~~D~eYP~rvA~tLL~kvld~~~  102 (198)
T KOG0861|consen   77 GVLIADDEYPVRVAFTLLNKVLDEFT  102 (198)
T ss_pred             EEEEecCcCchhHHHHHHHHHHHHHh
Confidence            999999641 2334567788887775

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=80.76  E-value=1.8  Score=35.78  Aligned_cols=51  Identities=16%  Similarity=0.232  Sum_probs=40.7

Q ss_pred             HHHHHHhcchhhhhh--hccccccccceeeeecceEEEEEEecCCeEEEEEec
Q 032720           35 HQFILHAALDIVQDL--AWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHD   85 (135)
Q Consensus        35 ~~~~~~~sLD~i~~~--~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~   85 (135)
                      .+.+-++.+|-+|..  -|...+..|...+..=+|+||+|+-.+|+||+--..
T Consensus       168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP  220 (447)
T KOG4497|consen  168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP  220 (447)
T ss_pred             HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc
Confidence            345667788888744  366777889898988899999999999999987443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
1h3q_A	140	Crystal Sturcture Of Sedl At 2.4 Angstroms Resoluti		5e-35
2j3w_A	142	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		5e-35

>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution Length = 140

Iteration: 1
 Score =  142 bits (358), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 1   MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 142

Iteration: 1
 Score =  142 bits (358), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 1   MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 3   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62
Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 63  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 122
Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 123 IRSSAFDRKVQFLGKKHL 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
2j3w_A	142	Sedlin, trafficking protein particle complex prote	9e-56
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	1e-16
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	2e-14
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	1e-07
3cue_A	219	Transport protein particle 23 kDa subunit; membran	3e-07

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score =  170 bits (431), Expect = 9e-56
 Identities = 65/138 (47%), Positives = 95/138 (68%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGS---AVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E      A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 3   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 63  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 122

Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 123 IRSSAFDRKVQFLGKKHL 140

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score = 71.7 bits (175), Expect = 1e-16
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 23  GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFML 82
           G      +   +   + H+   I   L+    +  ++ +   +   +  Y T    +F++
Sbjct: 99  GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEML-ETDTFKLHCYQTLTGIKFVV 157

Query: 83  LHDSRNDDGIKSFFQEVHELYIK-ILLNPLYLPGSRITSSHFDTKVRALARKY 134
           L D     GI S  ++++E+Y    L NP Y     I    FD  ++      
Sbjct: 158 LADP-RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVA 209

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae} Length = 162

 Score = 65.1 bits (158), Expect = 2e-14
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 1   MATTACFI-IVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQD--LAWTTSAMF 57
           M+   CF+ ++  ++ PI       A    +    +  + + +LD  +   + W +    
Sbjct: 6   MSLRPCFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSK 65

Query: 58  LKAIDRFNDLVVSVY---VTAGHTRFMLLHDSRN-------DDGIKSFFQEVHELYIKIL 107
                 F    VSV+   +     + ++  + ++        + I   F+ V ++YI++ 
Sbjct: 66  PLLKSIFQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVK 125

Query: 108 LNPLYLPG-----SRITSSHFDTKV 127
            NPL + G      +     FD   
Sbjct: 126 CNPLLVSGDEKSIIKSLERKFDELF 150

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Length = 145

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 7   FIIVSRNEIPIY----EAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKA 60
             +  RN + ++      +  + + +E+  +L   +L +    V  ++            
Sbjct: 6   LYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQ 65

Query: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHE-LYIK-ILLNPLYLPGSRI 118
             R+    +  Y T    + ++  D      I+     ++  LY++ ++ NPL   G  +
Sbjct: 66  TSRYK---LHYYETPTGIKVVMNTDLGVGP-IRDVLHHIYSALYVEFVVKNPLCPLGQTV 121

Query: 119 TSSHFDTKVRALAR 132
            S  F +++ +  R
Sbjct: 122 QSELFRSRLDSYVR 135

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 219

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 27/108 (25%)

Query: 51  WTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRND--------------------- 89
           W  S +     D+F    + +Y T    +F+ +  S                        
Sbjct: 114 WNKSGLRQLCTDQFT---MFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNL 170

Query: 90  --DGIKSFFQEVHELYIK-ILLNPLYLPGSRITSSHFDTKVRALARKY 134
                 +F ++V+ LY   ++ +P Y     I S+ FD KV+ +    
Sbjct: 171 AIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
2j3w_A	142	Sedlin, trafficking protein particle complex prote	100.0
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	100.0
3cue_C	159	Transport protein particle 18 kDa subunit; membran	100.0
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	100.0
3cue_A	219	Transport protein particle 23 kDa subunit; membran	100.0
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	100.0
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	93.35
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	93.28
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	93.28
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	92.84
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	89.59
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	87.28
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	86.07
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	81.72
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	81.45

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=100.00  E-value=1.6e-46  Score=269.19  Aligned_cols=135  Identities=48%  Similarity=0.854  Sum_probs=125.6

Q ss_pred             CCceEEEEEEcCCCCeeEEEecCCCcc---ccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCC
Q 032720            1 MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGH   77 (135)
Q Consensus         1 m~~i~~l~Ii~~~~~ply~~~~~~~~~---~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg   77 (135)
                      |++++|++||||+|+|||+++|++.++   .++.++..++++|++||+++++.|.++++|||.++++++|++|||+|+||
T Consensus         3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg   82 (142)
T 2j3w_A            3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   82 (142)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence            778999999999999999999986543   23445777899999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHhhC
Q 032720           78 TRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL  135 (135)
Q Consensus        78 ~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~  135 (135)
                      +|||+++|+++++++|++|++||++|++++|||||++++||+|+.||++|++++++||
T Consensus        83 ~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l  140 (142)
T 2j3w_A           83 MRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHL  140 (142)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHHhc
Confidence            9999999985689999999999999999999999999999999999999999999997

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=100.00  E-value=1.8e-38  Score=228.18  Aligned_cols=131  Identities=13%  Similarity=0.158  Sum_probs=108.1

Q ss_pred             CceEEEEEEcCCCCeeEEEecCCCc--ccc-chHHHHHHHHHhcchhhhhhhccc-cccccceeeeecceEEEEEEecCC
Q 032720            2 ATTACFIIVSRNEIPIYEAEVGSAV--KRE-DAAQLHQFILHAALDIVQDLAWTT-SAMFLKAIDRFNDLVVSVYVTAGH   77 (135)
Q Consensus         2 ~~i~~l~Ii~~~~~ply~~~~~~~~--~~~-~~~~~~~~~~~~sLD~i~~~~~~~-~~~ylg~l~~~~~~~v~~y~T~tg   77 (135)
                      ++++|++||||+|+|||+++|+.++  +.. +++....+.++.||+.|.+++.+. +..++..+ ++++|++|||+|+||
T Consensus         1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~-~t~~ykl~~~~T~Tg   79 (145)
T 2j3t_C            1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSF-QTSRYKLHYYETPTG   79 (145)
T ss_dssp             -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEE-ECSSCEEEEEECTTS
T ss_pred             CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE-ecCCEEEEEEEcCCC
Confidence            3589999999999999999997542  211 344333344444777777777654 45677666 699999999999999


Q ss_pred             eEEEEEecCCCchhHHHHHHHHH-HHHHhhhh-CCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720           78 TRFMLLHDSRNDDGIKSFFQEVH-ELYIKILL-NPLYLPGSRITSSHFDTKVRALARKY  134 (135)
Q Consensus        78 ~Kfvl~~~~~~~~~i~~~f~~i~-~~Y~~~v~-NPFy~~~~~I~s~~F~~~v~~~~~~~  134 (135)
                      +|||+++|++ ++++|++|++|| ++|+|+|+ ||||++|+||+|+.||++|+++++++
T Consensus        80 iKFvl~td~~-~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~  137 (145)
T 2j3t_C           80 IKVVMNTDLG-VGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL  137 (145)
T ss_dssp             CEEEEEECTT-CCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTS
T ss_pred             CEEEEEecCC-cchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhC
Confidence            9999999975 788999999999 89999876 99999999999999999999999875

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-35  Score=212.71  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=108.3

Q ss_pred             CceEEEEEEcCCCCeeEEEecCCC-----c----cccchHHHHHHHHHhcchhhhhhhcccc--ccccceeeeecceEEE
Q 032720            2 ATTACFIIVSRNEIPIYEAEVGSA-----V----KREDAAQLHQFILHAALDIVQDLAWTTS--AMFLKAIDRFNDLVVS   70 (135)
Q Consensus         2 ~~i~~l~Ii~~~~~ply~~~~~~~-----~----~~~~~~~~~~~~~~~sLD~i~~~~~~~~--~~ylg~l~~~~~~~v~   70 (135)
                      ++|+||+||||+|+|||+++|..+     +    +..+++....+.++.||+.+.+++++.+  +.|  ...++++|++|
T Consensus         1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f--~~~~T~~ykl~   78 (159)
T 3cue_C            1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDI--RSISTGKYRVH   78 (159)
T ss_dssp             CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCE--EEEECSSCBEE
T ss_pred             CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCe--EEEeeCCEEEE
Confidence            358999999999999999999642     1    2234455555666669999999997754  444  55568999999


Q ss_pred             EEEecCCeEEEEEecCCCchhHHHHHHHHHH-HHHhhh-hCC-----CCCCC--------CCcCChhHHHHHHHHHHhh
Q 032720           71 VYVTAGHTRFMLLHDSRNDDGIKSFFQEVHE-LYIKIL-LNP-----LYLPG--------SRITSSHFDTKVRALARKY  134 (135)
Q Consensus        71 ~y~T~tg~Kfvl~~~~~~~~~i~~~f~~i~~-~Y~~~v-~NP-----Fy~~~--------~~I~s~~F~~~v~~~~~~~  134 (135)
                      ||+|+||+|||+++|++ ++++|++|++||+ +|+++| +||     ||+++        +||+|++||++|+++++++
T Consensus        79 ~~eT~TgiKFvl~td~~-~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~  156 (159)
T 3cue_C           79 TYCTASGLWFVLLSDFK-QQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPM  156 (159)
T ss_dssp             EECCSSCCEEEEECCSS-SSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC
T ss_pred             EEEeCCCCEEEEEeCCC-cchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhc
Confidence            99999999999999975 8899999999997 999987 699     99999        9999999999999999875

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=209.70  Aligned_cols=113  Identities=18%  Similarity=0.360  Sum_probs=96.3

Q ss_pred             EEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhh--ccccc--cccceeeeecceEEEEEE-ecCCeE
Q 032720            5 ACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSA--MFLKAIDRFNDLVVSVYV-TAGHTR   79 (135)
Q Consensus         5 ~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~--~~~~~--~ylg~l~~~~~~~v~~y~-T~tg~K   79 (135)
                      -+++||||+|.|||++.+++.....++.+.+||++|+|||+||+++  |.+.+  +|||.++++++++||||+ |+||+|
T Consensus        11 ~FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vK   90 (162)
T 3pr6_A           11 CFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLK   90 (162)
T ss_dssp             SEEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCE
T ss_pred             eEEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceE
Confidence            3778999999999999997653334467899999999999999999  76654  689999999999999998 999999


Q ss_pred             EEEEecCC-----Cc--hhHHHHHHHHHHHHHhhhhCCCCCCCCC
Q 032720           80 FMLLHDSR-----ND--DGIKSFFQEVHELYIKILLNPLYLPGSR  117 (135)
Q Consensus        80 fvl~~~~~-----~~--~~i~~~f~~i~~~Y~~~v~NPFy~~~~~  117 (135)
                      ||++++.+     +|  ++||+||++||++|++++|||||.+++.
T Consensus        91 fVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l~NPFy~~~d~  135 (162)
T 3pr6_A           91 IVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLLVSGDE  135 (162)
T ss_dssp             EEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTGGGSCH
T ss_pred             EEEEEccCCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCCCch
Confidence            99999863     35  7999999999999999999999999743

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-32  Score=205.93  Aligned_cols=132  Identities=16%  Similarity=0.187  Sum_probs=106.0

Q ss_pred             CceEEEEEEcCCCCeeEEEecCCC-ccccchHHHHHHHHHhcchhhhhhhcccc--------------------------
Q 032720            2 ATTACFIIVSRNEIPIYEAEVGSA-VKREDAAQLHQFILHAALDIVQDLAWTTS--------------------------   54 (135)
Q Consensus         2 ~~i~~l~Ii~~~~~ply~~~~~~~-~~~~~~~~~~~~~~~~sLD~i~~~~~~~~--------------------------   54 (135)
                      ++|++++||||+|++||.++|... .+..+++.+.-+.+..++..|..++.+..                          
T Consensus         1 M~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (219)
T 3cue_A            1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRS   80 (219)
T ss_dssp             -CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC-----
T ss_pred             CeeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccccc
Confidence            358999999999999999999743 23444554443444447888888886532                          


Q ss_pred             -----------------------------------ccccceeeeecceEEEEEEecCCeEEEEEecCCC-c---------
Q 032720           55 -----------------------------------AMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRN-D---------   89 (135)
Q Consensus        55 -----------------------------------~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~~~~-~---------   89 (135)
                                                         ...+ ....+++|++|||+|+||+|||+++|++. +         
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~-~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~  159 (219)
T 3cue_A           81 DTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGL-RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTD  159 (219)
T ss_dssp             -----------------------CCSCCSCCCCCCSSSC-CEEEESSCEEEEEECTTSCEEEEEESSCC-----------
T ss_pred             ccccccccccccccccccccccccccccccccccCCCce-EEEEeCCEEEEEEEcCCCCEEEEEecCCCccccccccccc
Confidence                                               1122 23337999999999999999999999763 2         


Q ss_pred             -------------hhHHHHHHHHHHHHHhhhh-CCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720           90 -------------DGIKSFFQEVHELYIKILL-NPLYLPGSRITSSHFDTKVRALARKY  134 (135)
Q Consensus        90 -------------~~i~~~f~~i~~~Y~~~v~-NPFy~~~~~I~s~~F~~~v~~~~~~~  134 (135)
                                   +++|+||++||++|+|+|| ||||+++|||+|+.||++|+++++++
T Consensus       160 ~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~  218 (219)
T 3cue_A          160 KPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL  218 (219)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhc
Confidence                         8899999999999999987 99999999999999999999999986

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=100.00  E-value=4e-33  Score=211.22  Aligned_cols=122  Identities=17%  Similarity=0.260  Sum_probs=105.2

Q ss_pred             EEEcCCCCeeEEEecCCCccccchH-HHHHHHHHhcchhhhhhhcccc-ccccceeeeecceEEEEEEecCCeEEEEEec
Q 032720            8 IIVSRNEIPIYEAEVGSAVKREDAA-QLHQFILHAALDIVQDLAWTTS-AMFLKAIDRFNDLVVSVYVTAGHTRFMLLHD   85 (135)
Q Consensus         8 ~Ii~~~~~ply~~~~~~~~~~~~~~-~~~~~~~~~sLD~i~~~~~~~~-~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~   85 (135)
                      .|+||+|.|||++.|...  .++++ +....++| |||+|++++|+.+ ...+..+ .+++|++|||+|+||+|||+++|
T Consensus        85 ~iigk~N~PLyir~f~~~--l~sn~~L~lag~lh-SLd~i~~klsp~~~s~g~~~~-~T~~ykl~~y~T~TgiKFVLltd  160 (219)
T 2j3t_D           85 YLGNPANYPVSIRFGRPR--LTSNEKLMLASMFH-SLFAIGSQLSPEQGSSGIEML-ETDTFKLHCYQTLTGIKFVVLAD  160 (219)
T ss_dssp             HTTCGGGCSEEEEEECCC--CCHHHHHHHHHHHH-HHHHHHHHTCSSSSCCSCSEE-EESSCEEEEEECTTSCEEEEEEC
T ss_pred             eeecCCCCceEEEecCCC--CChhHHHHHHHHHH-HHHHHHHHhCCCCCCCCeeEE-ecCceEEEEEEcCCCCEEEEEec
Confidence            578999999999999653  23333 34456888 9999999999864 3455444 58999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHhhhh-CCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720           86 SRNDDGIKSFFQEVHELYIKILL-NPLYLPGSRITSSHFDTKVRALARKY  134 (135)
Q Consensus        86 ~~~~~~i~~~f~~i~~~Y~~~v~-NPFy~~~~~I~s~~F~~~v~~~~~~~  134 (135)
                      ++ ++++|++|++||++|+++++ ||||++++||+|+.||++|+++++++
T Consensus       161 ~~-~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~  209 (219)
T 2j3t_D          161 PR-QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVA  209 (219)
T ss_dssp             TT-CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred             CC-chHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHh
Confidence            75 89999999999999999976 99999999999999999999999986

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=93.35  E-value=0.067  Score=40.15  Aligned_cols=24  Identities=21%  Similarity=0.236  Sum_probs=19.9

Q ss_pred             CCceEEEEEEcCCCCeeEEEecCCC
Q 032720            1 MATTACFIIVSRNEIPIYEAEVGSA   25 (135)
Q Consensus         1 m~~i~~l~Ii~~~~~ply~~~~~~~   25 (135)
                      |+ ||+++|+||+|++||.+++..+
T Consensus         1 m~-iy~~yi~~~~~~liy~~~~~~~   24 (219)
T 2j3t_D            1 MA-IFSVYVVNKAGGLIYQLDSYAP   24 (219)
T ss_dssp             -C-EEEEEEECTTSCEEEEEECC--
T ss_pred             Ce-EEEEEEEecCCceEEecccCCC
Confidence            44 9999999999999999999754

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=93.28  E-value=1.4  Score=30.75  Aligned_cols=95  Identities=16%  Similarity=0.135  Sum_probs=53.1

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeEEEEE
Q 032720            4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLL   83 (135)
Q Consensus         4 i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~   83 (135)
                      |-++.|+|++|+++..|.|..............+  +   ..+..+ .+...+++    ..++++ +.|....++=|+++
T Consensus         2 I~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~--~---~~i~~~-~~~~~~~i----~~~~~~-~vy~~~~~Lyfv~~   70 (158)
T 1w63_Q            2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVREL--M---QVVLAR-KPKMCSFL----EWRDLK-VVYKRYASLYFCCA   70 (158)
T ss_dssp             EEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHH--H---HHHHTS-CSSSCSEE----EETTEE-EEEEEETTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHH--H---HHHhcc-CCCCCCeE----EECCEE-EEEEEECCEEEEEE
Confidence            5689999999999999999653211111122112  1   111111 00111222    244544 56777889999999


Q ss_pred             ecCC-CchhHHHHHHHHHHHHHhhhhC
Q 032720           84 HDSR-NDDGIKSFFQEVHELYIKILLN  109 (135)
Q Consensus        84 ~~~~-~~~~i~~~f~~i~~~Y~~~v~N  109 (135)
                      ++.. ++-.+-++++.+.++.-+|..|
T Consensus        71 ~~~~~Nel~~le~L~~~vevl~~yf~~   97 (158)
T 1w63_Q           71 IEGQDNELITLELIHRYVELLDKYFGS   97 (158)
T ss_dssp             ECSSSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence            8754 3445556666666666555543

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=93.28  E-value=1.7  Score=31.68  Aligned_cols=101  Identities=11%  Similarity=0.152  Sum_probs=61.9

Q ss_pred             CCceEEEEEEcCCCC-eeEEE-ecC--CCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecC
Q 032720            1 MATTACFIIVSRNEI-PIYEA-EVG--SAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAG   76 (135)
Q Consensus         1 m~~i~~l~Ii~~~~~-ply~~-~~~--~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~t   76 (135)
                      |+-++++.|+-+++. |+... .++  +-+.= +....-+|+..++ ..+-+++.+.    -+.....++|.+|+|....
T Consensus         1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f-~r~sv~ef~~f~~-r~il~r~~~~----~r~s~~~~~y~fH~y~~~~   74 (199)
T 3kyq_A            1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFF-QRSSVQEFMTFTS-QLIVERSAKG----SRASVKEQEYLCHVYVRSD   74 (199)
T ss_dssp             CCCEEEEEEEEECSSCEEEEEEEECCTTSCTT-THHHHHHHHHHHH-HHHHHTSCTT----EEEEEECSSEEEEEEECTT
T ss_pred             CceEEEEEEEEcCCCCceEEeeecccccccce-ehHhHHHHHHHHH-HHHHhcCCCC----CeEEEEeCCEEEEEEEecC
Confidence            788999999976544 44333 332  22221 1112224655533 2333333322    1344457899999999999


Q ss_pred             CeEEEEEecCC-CchhHHHHHHHHHHHHHhhh
Q 032720           77 HTRFMLLHDSR-NDDGIKSFFQEVHELYIKIL  107 (135)
Q Consensus        77 g~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v  107 (135)
                      |+-+++++|.. ...-.-.|+++|.+.|....
T Consensus        75 gl~yl~itd~~yp~r~AF~fL~ei~~eF~~~~  106 (199)
T 3kyq_A           75 SLAGVVIADSEYPSRVAFTLLEKVLDEFSKQV  106 (199)
T ss_dssp             SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHS
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999965 23455678888888887643

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=92.84  E-value=1.5  Score=29.89  Aligned_cols=95  Identities=12%  Similarity=0.060  Sum_probs=53.3

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeEEEEE
Q 032720            4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLL   83 (135)
Q Consensus         4 i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~   83 (135)
                      |-++.|+|++|+++..|.|.+.+..........|.         .++...++. ...+-..++++ +.|....++=|+++
T Consensus         2 I~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~---------~~v~~~~~~-~~~~~~~~~~~-~vy~~~~~Lyfv~~   70 (142)
T 2vgl_S            2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVH---------AVVTVRDAK-HTNFVEFRNFK-IIYRRYAGLYFCIC   70 (142)
T ss_dssp             EEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHH---------HHHHTCCTT-SCSEEEETTEE-EEEEEETTEEEEEE
T ss_pred             eEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHH---------HHHhcCCCC-CCCEEEECCEE-EEEEEECCEEEEEE
Confidence            56899999999999999996432111111111121         111111100 01112244444 56788889999999


Q ss_pred             ecCC-CchhHHHHHHHHHHHHHhhhhC
Q 032720           84 HDSR-NDDGIKSFFQEVHELYIKILLN  109 (135)
Q Consensus        84 ~~~~-~~~~i~~~f~~i~~~Y~~~v~N  109 (135)
                      ++.. ++-.+-++++.+.++.-+|..|
T Consensus        71 ~~~~~N~l~~le~L~~~ve~l~~yf~~   97 (142)
T 2vgl_S           71 VDVNDNNLAYLEAIHNFVEVLNEYFHN   97 (142)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence            8754 3445566666666666666533

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=89.59  E-value=4.4  Score=29.07  Aligned_cols=74  Identities=9%  Similarity=0.161  Sum_probs=51.3

Q ss_pred             eeeeecceEEEEEEecCCeEEEEEecCC-CchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720           60 AIDRFNDLVVSVYVTAGHTRFMLLHDSR-NDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKY  134 (135)
Q Consensus        60 ~l~~~~~~~v~~y~T~tg~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~  134 (135)
                      .....++|.+| |....|+-+++++|.. ...-.-.|+++|.+.|....-+-.-....|..-..|+..+.++.+.|
T Consensus        53 ~s~~~~~y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y  127 (196)
T 2nut_C           53 CTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLY  127 (196)
T ss_dssp             EEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTT
T ss_pred             EEEEeCCEEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHh
Confidence            34446788888 8889999999999965 23455678889888887644332211223555568999998887765

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=87.28  E-value=8.2  Score=31.04  Aligned_cols=93  Identities=5%  Similarity=0.029  Sum_probs=52.9

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeEEEEE
Q 032720            4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLL   83 (135)
Q Consensus         4 i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~   83 (135)
                      |-++.|+|++|+++..|.|.....   ....         +.+..++....+.-...+-..+++ .+.|+...++=|+++
T Consensus         2 I~~i~I~~~~Gk~~l~k~y~~~~~---~~~~---------~~f~~~v~~~~~~~~~~ii~~~~~-~~vy~~~~~Lyfv~~   68 (435)
T 2vgl_M            2 IGGLFIYNHKGEVLISRVYRDDIG---RNAV---------DAFRVNVIHARQQVRSPVTNIART-SFFHVKRSNIWLAAV   68 (435)
T ss_dssp             CCEEEEECTTCCEEEEEECSSSCC---HHHH---------HHHHHHTTTCSSCCCCSEEEETTE-EEEEEEETTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEecCCCCC---hhHH---------HHHHHHHhccccCCCCCEEEECCE-EEEEEEECCEEEEEE
Confidence            458999999999999999964211   1111         222222221111000112224454 467788889999999


Q ss_pred             ecCC-CchhHHHHHHHHHHHHHhhhhC
Q 032720           84 HDSR-NDDGIKSFFQEVHELYIKILLN  109 (135)
Q Consensus        84 ~~~~-~~~~i~~~f~~i~~~Y~~~v~N  109 (135)
                      ++.. ++-.+-+++..+.++.-+|..|
T Consensus        69 ~~~~~n~l~~le~L~~~v~vl~~yf~~   95 (435)
T 2vgl_M           69 TKQNVNAAMVFEFLYKMCDVMAAYFGK   95 (435)
T ss_dssp             ESSCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            8754 3445556666666665555543

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=86.07  E-value=7.5  Score=27.79  Aligned_cols=75  Identities=13%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             ceeeeecceEEEEEEecCCeEEEEEecCC-CchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720           59 KAIDRFNDLVVSVYVTAGHTRFMLLHDSR-NDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKY  134 (135)
Q Consensus        59 g~l~~~~~~~v~~y~T~tg~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~  134 (135)
                      +..+..++|..| |....|+-+++++|.. ...-.-.|+.+|.+.|....-+.-.....+-....|+..++++.++|
T Consensus        43 k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y  118 (189)
T 4b93_A           43 KLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHH  118 (189)
T ss_dssp             EEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHHHhh
Confidence            344557889888 8889999999999965 23455678888887776543211111111112356888888887765

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=81.72  E-value=4.9  Score=32.23  Aligned_cols=88  Identities=5%  Similarity=0.056  Sum_probs=51.2

Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhc-----cccccccceeeeecceEEEEEEecCC
Q 032720            3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAW-----TTSAMFLKAIDRFNDLVVSVYVTAGH   77 (135)
Q Consensus         3 ~i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~-----~~~~~ylg~l~~~~~~~v~~y~T~tg   77 (135)
                      +|-++.|+|++|+++..|.|.........            +.+...+.     +....+    -..+++ .+.|+...+
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~------------~~f~~~v~~~~~~~~~~~~----i~~~~~-~~vy~~~~~   64 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGDVDMSEV------------EHFMPILMEKEEEGMLSPI----LAHGGV-RFMWIKHNN   64 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCSCTTTTH------------HHHHHHHHHHHHTSCCCSE----EEETTE-EEEEEEETT
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCChHHH------------HHHHHHHhhccccCCCCCE----EEECCE-EEEEEEECC
Confidence            46799999999999999999643211111            11111111     111111    124444 366788889


Q ss_pred             eEEEEEecCC-CchhHHHHHHHHHHHHHhhh
Q 032720           78 TRFMLLHDSR-NDDGIKSFFQEVHELYIKIL  107 (135)
Q Consensus        78 ~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v  107 (135)
                      +=|+++++.. ++-.+-+++..+.++.-+|.
T Consensus        65 Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf   95 (423)
T 1w63_M           65 LYLVATSKKNACVSLVFSFLYKVVQVFSEYF   95 (423)
T ss_dssp             EEEEEEESSCCCTHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999998754 33455556666666555554

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=81.45  E-value=12  Score=26.47  Aligned_cols=47  Identities=11%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             eeeeecceEEEEEEecCCeEEEEEecCC-CchhHHHHHHHHHHHHHhhh
Q 032720           60 AIDRFNDLVVSVYVTAGHTRFMLLHDSR-NDDGIKSFFQEVHELYIKIL  107 (135)
Q Consensus        60 ~l~~~~~~~v~~y~T~tg~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v  107 (135)
                      .....++|.++.+. ..|+-+++++|.. ...-.-.|+++|.+.|.+..
T Consensus        86 ~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y  133 (169)
T 2vx8_A           86 LTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY  133 (169)
T ss_dssp             EEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHHHHHHHHh
Confidence            33446889888887 4699999999965 23456778888888887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	1e-51

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  158 bits (400), Expect = 1e-51
 Identities = 65/138 (47%), Positives = 95/138 (68%), Gaps = 3/138 (2%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E     K   ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
           LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 118 ITSSHFDTKVRALARKYL 135
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	100.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	95.91
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	95.08
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	92.58

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-49  Score=280.13  Aligned_cols=135  Identities=48%  Similarity=0.846  Sum_probs=127.5

Q ss_pred             CCceEEEEEEcCCCCeeEEEecCCCccc---cchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCC
Q 032720            1 MATTACFIIVSRNEIPIYEAEVGSAVKR---EDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGH   77 (135)
Q Consensus         1 m~~i~~l~Ii~~~~~ply~~~~~~~~~~---~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg   77 (135)
                      |++.|+|+||||+|+|||+++|+++++.   ++..+..||++|+|||++|++.|.++++|||.++++++|+||||+|+||
T Consensus         1 ~~~~y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg   80 (140)
T d2j3wa1           1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   80 (140)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             CccEEEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCC
Confidence            8999999999999999999999876432   3346778999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHhhC
Q 032720           78 TRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL  135 (135)
Q Consensus        78 ~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~  135 (135)
                      +|||+++|++.++.++.||+++|++|+++++||||++++||+|+.||++|+++++|||
T Consensus        81 ~Kfvl~td~~~~~~i~~~~~~v~~lYv~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l  138 (140)
T d2j3wa1          81 MRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHL  138 (140)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCcchHHHHHHHHHHHHHHHHhhCccCCCCCcccCHHHHHHHHHHHHHHc
Confidence            9999999998888999999999999999999999999999999999999999999997

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.58  E-value=0.12  Score=34.10  Aligned_cols=119  Identities=11%  Similarity=0.084  Sum_probs=64.2

Q ss_pred             eEEEEEEcCC-CCeeEEEec-C--CCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeE
Q 032720            4 TACFIIVSRN-EIPIYEAEV-G--SAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTR   79 (135)
Q Consensus         4 i~~l~Ii~~~-~~ply~~~~-~--~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~K   79 (135)
                      ++++.|+-.+ ..|+....- +  +-+.- +....-+++.+. -..+.++..+..    ++-...++|.+|+|+...|+-
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ff-qR~svkE~~~f~-sr~i~~Rt~~g~----r~sv~~~~y~~h~yv~~~gl~   76 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFF-ERSSVGQFMTFF-AETVASRTGAGE----RQSIEEGNYIGHVYARSEGIC   76 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTT-HHHHHHHHHHHH-HHHHHHHCCSSS----EEEEEETTEEEEEECCSSSCE
T ss_pred             EEEEEEEEcCCCCcEEEeeecccccccee-ehHhHHHHHHHH-HHHHhhcCCCCc----eEEEEcCCeEEEEEEeeCCEE
Confidence            4667777643 456665433 2  22210 111122355542 233444443321    344457899999999999999


Q ss_pred             EEEEecCC-CchhHHHHHHHHHHHHHhhhhCC----CCCCCCCcCChhHHHHHH
Q 032720           80 FMLLHDSR-NDDGIKSFFQEVHELYIKILLNP----LYLPGSRITSSHFDTKVR  128 (135)
Q Consensus        80 fvl~~~~~-~~~~i~~~f~~i~~~Y~~~v~NP----Fy~~~~~I~s~~F~~~v~  128 (135)
                      +++++|.. ...-.=.++++|.+.|.+..-+.    --..+.++..+.|++.+.
T Consensus        77 ~l~i~d~~Yp~r~AF~~L~~i~~eF~~~~~~~~~~~i~~~~~~~~~~~l~~~l~  130 (140)
T d1ioua_          77 GVLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYIS  130 (140)
T ss_dssp             EEEEBCTTSCHHHHHHHHHHHHHHHHHSSCHHHHTTCSCCCTTTSCHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHHHHHHHcChHhhhhhhccccccchHHHHHHHH
Confidence            99999975 23344566777777776543111    111234455555555444