Citrus Sinensis ID: 032729

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNHQNKVRRLC
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccHHHHcccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHcccccHHHHHHHHHHccEEEccccccEEccHHHHHcHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHccEEEcc
Coil and Loop (DISEMBL)
mlpkyfkhnnfsSFIRQLNtygfkktspkqwefrHDKFRRGCRHLLVEIVrkksdpsvfPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMgnfnhqnkvrrlc
Flexible Loop (DISEMBL)
mlpkyfkhnnfssfiRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEivrkksdpsVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQymgnfnhqnkvrrlc
Low Complexity Region (SEG)
MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNHQNKVRRLC
Disordered region (IsUnstruct)
****YFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYL**********************************LQLQMQIAEFKALEIKLLDSLSQYMGNF**********
Disordered Region (DISOPRED)
MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVE******************************************ESLKRERLQLQMQIA***ALEIKLLDSL*************R***
Disordered Region (DISEMBL)
MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNHQNKVRRLC
Disordered Region (DISPRO)
MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRK*************************KEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNHQNKV*RLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEExxxxxxxxxxxxxxxxxxxxxEIKLLDSLSQYMGNFNHQNKVRRLC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q9SCW4	299	Heat stress transcription	yes	no	0.911	0.411	0.357	3e-19
Q96320	284	Heat stress transcription	no	no	0.903	0.429	0.392	3e-19
Q6H6Q7	498	Heat stress transcription	no	no	0.777	0.210	0.419	2e-18
P22335	301	Heat shock factor protein	N/A	no	0.881	0.395	0.367	1e-17
Q6Z9C8	390	Heat stress transcription	no	no	0.392	0.135	0.716	3e-17
Q7XRX3	305	Heat stress transcription	no	no	0.918	0.406	0.337	3e-17
Q652B0	454	Heat stress transcription	no	no	0.392	0.116	0.679	6e-17
P41151	495	Heat stress transcription	no	no	0.4	0.109	0.666	9e-17
Q6F388	357	Heat stress transcription	no	no	0.792	0.299	0.438	1e-16
Q40152	527	Heat shock factor protein	N/A	no	0.755	0.193	0.404	1e-16

>sp|Q9SCW4|HFB2A_ARATH Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 28/151 (18%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPS--- 57
           +LPK+FKHNNFSSF+RQLNTYGFKK  P +WEF +D F+RG + LL EI R+K   +   
Sbjct: 62  LLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQT 121

Query: 58  -VFPAYLKAASNEGSIASAAGKEHNNHLL------------------------LMEENES 92
            V P+  +         S +G+++NN+ +                        L+EENE 
Sbjct: 122 VVAPSSEQRNQTMVVSPSNSGEDNNNNQVMSSSPSSWYCHQTKTTGNGGLSVELLEENEK 181

Query: 93  LKRERLQLQMQIAEFKALEIKLLDSLSQYMG 123
           L+ + +QL  ++ + K++   +   +S Y+G
Sbjct: 182 LRSQNIQLNRELTQMKSICDNIYSLMSNYVG 212

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q96320|HSFB1_ARATH Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 18/140 (12%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
           +LP+YFKHNNFSSFIRQLNTYGF+KT P +WEF +D FRRG   LL +I R+KS  +   
Sbjct: 53  LLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTA 112

Query: 61  AYLKAASNEGSIASAAGKEH------------------NNHLLLMEENESLKRERLQLQM 102
                  +     S  G +H                  N    L  ENE LKRE   L  
Sbjct: 113 GKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENMVADLSGENEKLKRENNNLSS 172

Query: 103 QIAEFKALEIKLLDSLSQYM 122
           ++A  K    +L+  L+ ++
Sbjct: 173 ELAAAKKQRDELVTFLTGHL 192

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H6Q7|HSFA3_ORYSJ Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 62/105 (59%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
           +LP +FKHNNFSSF+RQLNTYGF+K    +WEF H+ F R  +HLL +IVR++S P+   
Sbjct: 106 VLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSSPTQQS 165

Query: 61  AYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIA 105
                +S E  +             L++E   LK+E LQ   Q++
Sbjct: 166 GLQPGSSGESGLDPELNTLRREKSALLQEVTRLKQEHLQTIEQMS 210

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 28/147 (19%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
           +LPKYFKHNNFSSF+RQLNTYGF+K  P +WEF ++ F+RG + LL  I R+K+  S  P
Sbjct: 48  LLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTST-P 106

Query: 61  AYLKAAS-------------------------NEGSIASAAGKEHNNHLLLMEENESLKR 95
           A  K+ +                         N GS+ +    + +    L +ENE LK+
Sbjct: 107 AGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPG--KLSQFTDLSDENEKLKK 164

Query: 96  ERLQLQMQIAEFKALEIKLLDSLSQYM 122
           +   L  ++ + K    +L+  LSQY+
Sbjct: 165 DNQMLSSELVQAKKQCNELVAFLSQYV 191

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q6Z9C8|HFB2B_ORYSJ Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 44/53 (83%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKK 53
           +LPKYFKHNNFSSF+RQLNTYGF+K  P +WEF +D FRRG R LL EI R+K
Sbjct: 87  LLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRK 139

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XRX3|HFB2A_ORYSJ Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 27/151 (17%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSD----- 55
           +LPK+FKH+NFSSF+RQLNTYGFKK    +WEF +D FRRG +HLL  I R+K       
Sbjct: 49  LLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSGTGGA 108

Query: 56  --------PSVFPAYLKAASNEGSIASAAGKEHNNHLL----------LMEENESLKRER 97
                   P+  P      S+ G  A ++        +          L EEN  L+RE 
Sbjct: 109 GAAPAGGIPTAIPISSPPTSSGGEPAVSSSPPRGAAGIAAGVSGAVAELEEENARLRREN 168

Query: 98  LQLQMQIAEFKALEIKLLDSLSQYMGNFNHQ 128
            +L  ++A  +    ++ D + + +  ++H 
Sbjct: 169 ARLARELARAR----RVCDGVRRLVSRYDHD 195

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652B0|HFB2C_ORYSJ Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/53 (67%), Positives = 44/53 (83%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKK 53
           +LPKYFKHNNFSSF+RQLNTYGF+K  P +WEF +D FRRG + LL +I R+K
Sbjct: 77  LLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRK 129

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 45/54 (83%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKS 54
           +LPKYFKHNNFSSF+RQLNTYGF+K  P +WEF ++ F RG +HLL +I R+KS
Sbjct: 91  LLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKS 144

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 14/121 (11%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKK---SDPS 57
           +LP+YFKHNNFSSF+RQLNTYGF+K  P +WEF ++ F RG +HLL  I R+K   S PS
Sbjct: 77  LLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPS 136

Query: 58  --VFPAYLKAA--SNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIK 113
                ++L+      EG I      +H    LLM E   L++E+   Q   ++ +A+E K
Sbjct: 137 QQSLGSFLEVGHFGYEGEIDQLKRDKH----LLMAEVVKLRQEQ---QNTKSDLQAMEQK 189

Query: 114 L 114
           L
Sbjct: 190 L 190

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 64/121 (52%), Gaps = 19/121 (15%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
           +LPKYFKHNNFSSF+RQLNTYGF+K  P +WEF ++ F RG +HLL  I R+K      P
Sbjct: 78  LLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRK------P 131

Query: 61  AYLKAASNE-------------GSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEF 107
           A+  A   +             G  AS           L EE E LKR++  L  ++   
Sbjct: 132 AHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRL 191

Query: 108 K 108
           +
Sbjct: 192 R 192

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
358346671	210	Heat stress transcription factor A-2c [M	0.977	0.628	0.705	5e-48
356495198	209	PREDICTED: heat stress transcription fac	0.970	0.626	0.694	4e-47
356548731	213	PREDICTED: heat shock factor protein HSF	0.977	0.619	0.679	1e-46
388514287	208	unknown [Lotus japonicus]	0.977	0.634	0.654	3e-45
388504504	208	unknown [Lotus japonicus]	0.977	0.634	0.654	4e-45
224125494	211	predicted protein [Populus trichocarpa]	0.962	0.616	0.681	1e-44
224077118	210	predicted protein [Populus trichocarpa]	0.955	0.614	0.664	1e-44
449527529	197	PREDICTED: heat stress transcription fac	0.881	0.604	0.683	4e-41
296086987	200	unnamed protein product [Vitis vinifera]	0.970	0.655	0.607	9e-39
147807262	200	hypothetical protein VITISV_006332 [Viti	0.970	0.655	0.585	1e-38

>gi|358346671|ref|XP_003637389.1| Heat stress transcription factor A-2c [Medicago truncatula] gi|355503324|gb|AES84527.1| Heat stress transcription factor A-2c [Medicago truncatula]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 116/136 (85%), Gaps = 4/136 (2%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPA 61
           LPKYFKHNNFSSFIRQLNTYGFKK S K+WEF+H+KF++GCRH+LVEI RKK +PSVFP 
Sbjct: 77  LPKYFKHNNFSSFIRQLNTYGFKKISSKRWEFQHEKFQKGCRHMLVEISRKKCEPSVFPQ 136

Query: 62  YLKAASNEGSIA--SAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119
           YLK+ S E ++   S+  +++NNH LLMEEN++LK+ERL+LQMQIAE KALE+KLL+ LS
Sbjct: 137 YLKSCSEENAMTNNSSVEEDNNNHELLMEENKNLKKERLELQMQIAECKALEMKLLECLS 196

Query: 120 QYMGNFNHQNKVRRLC 135
           QYM   N QNKVRRLC
Sbjct: 197 QYMD--NRQNKVRRLC 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495198|ref|XP_003516466.1| PREDICTED: heat stress transcription factor B-2a-like [Glycine max]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 117/134 (87%), Gaps = 3/134 (2%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPA 61
           LP+YFKHNNFSSFIRQLNTYGFKK S K+WEF+H+KF+RGCRH+L EI RKK +PSVFPA
Sbjct: 79  LPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPA 138

Query: 62  YLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQY 121
           YLK++S E + A+++ +E+N+H LLMEEN++LK+ERL+LQ+QI E KALE+KLL+ LSQ+
Sbjct: 139 YLKSSSEENN-ATSSTEENNDHQLLMEENKNLKKERLELQVQIDECKALEMKLLECLSQF 197

Query: 122 MGNFNHQNKVRRLC 135
           M    HQNKVRRLC
Sbjct: 198 MD--THQNKVRRLC 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548731|ref|XP_003542753.1| PREDICTED: heat shock factor protein HSF24-like [Glycine max]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/134 (67%), Positives = 114/134 (85%), Gaps = 2/134 (1%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPA 61
           LP+YFKHNNFSSFIRQLNTYGFKK S K+WEF+H+KF+RGCRH+L EI RKK +PSVFPA
Sbjct: 82  LPRYFKHNNFSSFIRQLNTYGFKKISSKKWEFKHEKFQRGCRHILGEITRKKCEPSVFPA 141

Query: 62  YLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQY 121
           YLK++S E +  S+  + +++H LLMEEN++LK+ERL+LQMQI E K LE+KLL+ LSQ+
Sbjct: 142 YLKSSSEENNATSSMEENNDHHQLLMEENKNLKKERLELQMQIDECKTLEMKLLECLSQF 201

Query: 122 MGNFNHQNKVRRLC 135
           M   +HQNKVRRLC
Sbjct: 202 MD--SHQNKVRRLC 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514287|gb|AFK45205.1| unknown [Lotus japonicus]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/136 (65%), Positives = 113/136 (83%), Gaps = 4/136 (2%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPA 61
           LP+YFKHNNFSSFIRQLNTYGFKKTS K+WEF+H+KF+RGCRH+LV+I RKK +PSVFP+
Sbjct: 75  LPRYFKHNNFSSFIRQLNTYGFKKTSSKRWEFQHEKFQRGCRHMLVDITRKKCEPSVFPS 134

Query: 62  YLKAASNEGSIASAAGKEHNN--HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119
           YLK++S E +  ++   E +   H LLMEEN++LK+ERL+LQ QIAE K+L++KLLD LS
Sbjct: 135 YLKSSSEENATMTSNSTEESKDYHELLMEENKNLKKERLELQTQIAECKSLQMKLLDCLS 194

Query: 120 QYMGNFNHQNKVRRLC 135
           Q+M    HQNKVR+ C
Sbjct: 195 QFMD--KHQNKVRKTC 208

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504504|gb|AFK40318.1| unknown [Lotus japonicus]

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/136 (65%), Positives = 113/136 (83%), Gaps = 4/136 (2%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPA 61
           LP+YFKHNNFSSFIRQLNTYGFKKTS K+WEF+H+KF+RGCRH+LV+I RKK +PSVFP+
Sbjct: 75  LPRYFKHNNFSSFIRQLNTYGFKKTSSKRWEFQHEKFQRGCRHMLVDITRKKREPSVFPS 134

Query: 62  YLKAASNEGSIASAAGKEHNN--HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119
           YLK++S E +  ++   E +   H LLMEEN++LK+ERL+LQ QIAE K+L++KLLD LS
Sbjct: 135 YLKSSSEENATMTSNSTEESKDYHELLMEENKNLKKERLELQTQIAECKSLQMKLLDCLS 194

Query: 120 QYMGNFNHQNKVRRLC 135
           Q+M    HQNKVR+ C
Sbjct: 195 QFMD--KHQNKVRKTC 208

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125494|ref|XP_002329819.1| predicted protein [Populus trichocarpa] gi|222870881|gb|EEF08012.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 114/135 (84%), Gaps = 5/135 (3%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPA 61
           LP+YFKH+NFSSFIRQLNTYGFKKTS KQWEF+H+KF++G RH+LVEI+RKK +PS+FPA
Sbjct: 81  LPRYFKHSNFSSFIRQLNTYGFKKTSSKQWEFKHEKFQKGRRHMLVEIIRKKCEPSMFPA 140

Query: 62  YLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQY 121
           YLKA+SN+ +  +    E  N L LM EN++L+RE+L+LQ+QIA+FKALE KLLD L+QY
Sbjct: 141 YLKASSNQEN--AIIDMEETNCLTLMAENKNLRREKLELQIQIAQFKALETKLLDCLNQY 198

Query: 122 -MGNFNHQNKVRRLC 135
            MG  NHQNK RRLC
Sbjct: 199 NMG--NHQNKTRRLC 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077118|ref|XP_002305140.1| predicted protein [Populus trichocarpa] gi|222848104|gb|EEE85651.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 112/134 (83%), Gaps = 5/134 (3%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPA 61
           LP++FKHNNFSSFIRQLNTYGFKKTS KQWEF+H+KF RG RHLLVEI RKK +PS FPA
Sbjct: 82  LPRFFKHNNFSSFIRQLNTYGFKKTSSKQWEFKHEKFLRGRRHLLVEITRKKCEPSTFPA 141

Query: 62  YLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQY 121
           YL+A++ E   ++    E +N L+LMEEN +L+RE+++L++QIA+FKALE+KLLD L+Q 
Sbjct: 142 YLEASNRE---SATLAMEESNRLILMEENRNLRREKMELEIQIAQFKALEMKLLDCLTQD 198

Query: 122 MGNFNHQNKVRRLC 135
           MG  +HQNK RRLC
Sbjct: 199 MG--SHQNKTRRLC 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527529|ref|XP_004170763.1| PREDICTED: heat stress transcription factor B-2a-like [Cucumis sativus]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 104/120 (86%), Gaps = 1/120 (0%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
           +LPKYFKHNNFSSFIRQLNTYGFKKTS K+WEF+H+KF+RG RH+LVEIVRKK +PSVFP
Sbjct: 75  LLPKYFKHNNFSSFIRQLNTYGFKKTSSKRWEFKHEKFQRGKRHMLVEIVRKKCEPSVFP 134

Query: 61  AYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQ 120
           A+L+ +S+EG    A  +E+ +HLLLMEEN +L+R++L+LQ QIA+FKAL I+LLD L +
Sbjct: 135 AFLR-SSHEGGATMAVNQENGDHLLLMEENNNLRRQKLELQAQIAQFKALHIRLLDCLGR 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086987|emb|CBI33243.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 110/135 (81%), Gaps = 4/135 (2%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
           MLP+YFKHNNFSSF+RQLNTYGFKK + K+WEF+HDKF+RGCR +L EI RKK +PS+FP
Sbjct: 68  MLPRYFKHNNFSSFVRQLNTYGFKKIASKRWEFQHDKFQRGCRDMLAEITRKKCEPSIFP 127

Query: 61  AYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQ 120
            +LKA+ +  + AS+A ++ +N L LMEENESL+R+ L LQMQI++ KALE+KL+D L+ 
Sbjct: 128 PFLKASKD--NTASSADQK-SNCLSLMEENESLRRQNLDLQMQISQLKALEMKLMDCLNV 184

Query: 121 YM-GNFNHQNKVRRL 134
            + G+ +  NK+RRL
Sbjct: 185 SIHGHHHPHNKLRRL 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807262|emb|CAN64165.1| hypothetical protein VITISV_006332 [Vitis vinifera]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 105/135 (77%), Gaps = 4/135 (2%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
           MLP+YFKHNNFSSF+RQLNTYGFKK + K+WEF+HDKF+RGCR +L EI RKK +PS+FP
Sbjct: 68  MLPRYFKHNNFSSFVRQLNTYGFKKIASKRWEFQHDKFQRGCRDMLAEITRKKCEPSIFP 127

Query: 61  AYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQ 120
            +LKA+ +     + +  + +N L LMEENESL+R+ L LQMQI++ KALE+KL+D L+ 
Sbjct: 128 PFLKASKDN---TAXSADQKSNCLSLMEENESLRRQNLDLQMQISQLKALEMKLMDCLNV 184

Query: 121 YMGNFNH-QNKVRRL 134
            +   +H  NK+RRL
Sbjct: 185 SIHGHHHPHNKLRRL 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2174043	299	HSFB2A "AT5G62020" [Arabidopsi	0.681	0.307	0.447	1.4e-22
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.8	0.218	0.433	3.4e-20
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.8	0.222	0.407	9.9e-20
TAIR|locus:2825726	348	HSFB4 "AT1G46264" [Arabidopsis	0.429	0.166	0.603	4.5e-19
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.496	0.246	0.514	2.2e-18
TAIR|locus:2117139	401	HSF A4A "AT4G18880" [Arabidops	0.881	0.296	0.430	1.8e-17
TAIR|locus:2091762	330	HSFC1 "AT3G24520" [Arabidopsis	0.392	0.160	0.641	3.2e-17
TAIR|locus:2115015	284	HSF4 "AT4G36990" [Arabidopsis	0.607	0.288	0.5	5.3e-17
TAIR|locus:2062698	244	HSFB3 "AT2G41690" [Arabidopsis	0.4	0.221	0.574	9.8e-17
TAIR|locus:2139792	377	AT-HSFB2B [Arabidopsis thalian	0.540	0.193	0.545	2.5e-16

TAIR|locus:2174043 HSFB2A "AT5G62020" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 43/96 (44%), Positives = 61/96 (63%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKK--SDPSV 58
             +LPK+FKHNNFSSF+RQLNTYGFKK  P +WEF +D F+RG + LL EI R+K  +    
Sbjct:    62 LLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQT 121

Query:    59 FPAYLKAASNEGSIASAA--GKEHNNHLLLMEENES 92
               A      N+  + S +  G+++NN+ ++     S
Sbjct:   122 VVAPSSEQRNQTMVVSPSNSGEDNNNNQVMSSSPSS 157

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
 Identities = 49/113 (43%), Positives = 70/113 (61%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKS-----D 55
             +LPKYFKHNNFSSF+RQLNTYGF+K  P +WEF ++ F RG +HLL +I R+KS      
Sbjct:    91 LLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGS 150

Query:    56 PSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFK 108
              S  P   + +  +GS+A+ +         L EE E LKR++  L  ++ + +
Sbjct:   151 SSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLR 203

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 9.9e-20, Sum P(2) = 9.9e-20
 Identities = 44/108 (40%), Positives = 63/108 (58%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
             +LPK FKHNNFSSF+RQLNTYGF+K  P +WEF ++ F RG +HLL  I R+K       
Sbjct:    76 LLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQ 135

Query:    61 AYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFK 108
              + ++  + G  +S +         L EE E LKR++  L  ++   +
Sbjct:   136 GHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLR 183

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2825726 HSFB4 "AT1G46264" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSV 58
             +LP YFKHNNFSSF+RQLNTYGF+K  P +WEF ++ F+RG +HLL EI R+K+   +
Sbjct:    73 LLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQMI 130

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IMP

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 36/70 (51%), Positives = 49/70 (70%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKS-DPSVF 59
             +LP++FKH+NFSSFIRQLNTYGF+K   ++WEF +++F  G R LL  I R+    PS  
Sbjct:    68 LLPRHFKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSS 127

Query:    60 PAYLKAASNE 69
             P++   A NE
Sbjct:   128 PSH--DACNE 135

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 53/123 (43%), Positives = 71/123 (57%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
             +LP++FKHNNFSSFIRQLNTYGF+K  P+QWEF +D F RG  HL+  I R+K   S   
Sbjct:    54 LLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSL 113

Query:    61 AYLKAASNEGSIASAAGKEHNNHL-LLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119
               L+A  N   +  +     NN +  L +E E L  E L  Q +  E   +++K L    
Sbjct:   114 PNLQAQLNP--LTDSERVRMNNQIERLTKEKEGLLEE-LHKQDEEREVFEMQVKELKERL 170

Query:   120 QYM 122
             Q+M
Sbjct:   171 QHM 173

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2091762 HSFC1 "AT3G24520" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
 Identities = 34/53 (64%), Positives = 42/53 (79%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKK 53
             +LP YFKHNNFSSF+RQLNTYGF+K  P +WEF ++ F RG +HLL  I R+K
Sbjct:    56 ILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRK 108

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2115015 HSF4 "AT4G36990" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/82 (50%), Positives = 52/82 (63%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFP 60
             +LP+YFKHNNFSSFIRQLNTYGF+KT P +WEF +D FRRG   LL +I R+KS  +   
Sbjct:    53 LLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTA 112

Query:    61 AYLKAASNEGSIASAAGKEHNN 82
                    +     S  G +H +
Sbjct:   113 GKCVVVGSPSESNSGGGDDHGS 134

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2062698 HSFB3 "AT2G41690" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
 Identities = 31/54 (57%), Positives = 41/54 (75%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKS 54
             +LP  FKH NFSSF+RQLNTYGF+K +  +WEF ++ FR+G R L+  I R+KS
Sbjct:    79 LLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKS 132

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2139792 AT-HSFB2B [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 42/77 (54%), Positives = 58/77 (75%)

Query:     1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKK-SDPSVF 59
             +LPKYFKHNNFSSF+RQLNTYGF+K  P +WEF +D F+RG + LL +I R+K S P++ 
Sbjct:    98 LLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMA 157

Query:    60 PAYLKAASNEGSIASAA 76
              A   AA+   ++A++A
Sbjct:   158 AA---AAAAAAAVAASA 171

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	2e-26
smart00415	105	smart00415, HSF, heat shock factor	7e-21
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	1e-14

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score = 94.1 bits (235), Expect = 2e-26
 Identities = 34/56 (60%), Positives = 40/56 (71%), Gaps = 2/56 (3%)

Query: 2  LPKYFKHNNFSSFIRQLNTYGFKKTSPK--QWEFRHDKFRRGCRHLLVEIVRKKSD 55
          LPKYFKHNNFSSF+RQLN YGF K       WEF H  F+RG + LL +I R+KS+
Sbjct: 41 LPKYFKHNNFSSFVRQLNMYGFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKSE 96

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score = 80.4 bits (199), Expect = 7e-21
 Identities = 33/62 (53%), Positives = 38/62 (61%), Gaps = 11/62 (17%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTSPK-----------QWEFRHDKFRRGCRHLLVEIV 50
           LP+YFKHNNFSSF+RQLN YGF+K  P+           QWEF +  F RG   LL  I 
Sbjct: 44  LPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIK 103

Query: 51  RK 52
           RK
Sbjct: 104 RK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 43/121 (35%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTSPK----------QWEFRHDKFRRGCRHLLVEIVR 51
           LP+YFKH NF+SF+RQLN YGF K S K           WEF +  F+ G   LL +I R
Sbjct: 52  LPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKR 111

Query: 52  KKSDPSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENE----SLKRERLQLQMQIAEF 107
           KK+  +         SN  S  +    E  N +L   E      SL      L + + E 
Sbjct: 112 KKAPSNR------VDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNEL 165

Query: 108 K 108
           K
Sbjct: 166 K 166

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG0627	304	consensus Heat shock transcription factor [Transcr	99.92
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	99.85
smart00415	105	HSF heat shock factor.	99.85
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.84
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	88.71
PF04340	225	DUF484: Protein of unknown function, DUF484; Inter	88.06
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	88.06
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	88.02
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	86.97
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	81.34
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	81.17
PRK10963	223	hypothetical protein; Provisional	81.05
smart00338	65	BRLZ basic region leucin zipper.	80.9

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=99.92  E-value=1.1e-25  Score=183.43  Aligned_cols=58  Identities=55%  Similarity=0.991  Sum_probs=55.7

Q ss_pred             CCCCCCCcCChhhHHhhhcccCceeec--CCcceeecCCcCCCChhchHHHhhhcCCCCC
Q 032729            1 MLPKYFKHNNFSSFIRQLNTYGFKKTS--PKQWEFRHDKFRRGCRHLLVEIVRKKSDPSV   58 (135)
Q Consensus         1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~--~~~~ef~h~~F~rg~~~ll~~IkRk~~~~~~   58 (135)
                      +||+||||+||+|||||||+|||+||.  ++.|||+|++|+||+++||++|+||++....
T Consensus        53 ~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~  112 (304)
T KOG0627|consen   53 LLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRI  112 (304)
T ss_pred             HhHHhccccCccceeeeecccceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCC
Confidence            689999999999999999999999999  9999999999999999999999999988664

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=99.85  E-value=1.1e-22  Score=142.78  Aligned_cols=54  Identities=67%  Similarity=1.126  Sum_probs=44.1

Q ss_pred             CCCCCCCcCChhhHHhhhcccCceeecCC---------cceeecCCcCCCChhchHHHhhhcC
Q 032729            1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPK---------QWEFRHDKFRRGCRHLLVEIVRKKS   54 (135)
Q Consensus         1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~~~---------~~ef~h~~F~rg~~~ll~~IkRk~~   54 (135)
                      |||+||+|++|+||+||||+|||+|+.++         .|+|+||+|+||+|++|..|+|+++
T Consensus        40 vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   40 VLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             THHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred             ccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence            78999999999999999999999999753         3999999999999999999999875

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=99.85  E-value=2.4e-22  Score=141.93  Aligned_cols=52  Identities=63%  Similarity=1.147  Sum_probs=49.6

Q ss_pred             CCCCCCCcCChhhHHhhhcccCceeecC-----------CcceeecCCcCCCChhchHHHhhh
Q 032729            1 MLPKYFKHNNFSSFIRQLNTYGFKKTSP-----------KQWEFRHDKFRRGCRHLLVEIVRK   52 (135)
Q Consensus         1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~~-----------~~~ef~h~~F~rg~~~ll~~IkRk   52 (135)
                      |||+||+|++|+||+||||+|||+|+.+           +.|+|+||+|+||+|+||..|+||
T Consensus        43 vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       43 LLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             HHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence            6899999999999999999999999976           679999999999999999999996

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.84  E-value=5.2e-22  Score=161.49  Aligned_cols=117  Identities=32%  Similarity=0.428  Sum_probs=76.3

Q ss_pred             CCCCCCCcCChhhHHhhhcccCceeecC----------CcceeecCCcCCCChhchHHHhhhcCCCCCCcccccccC---
Q 032729            1 MLPKYFKHNNFSSFIRQLNTYGFKKTSP----------KQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAAS---   67 (135)
Q Consensus         1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~~----------~~~ef~h~~F~rg~~~ll~~IkRk~~~~~~~p~~~~~~s---   67 (135)
                      |||+||||.||+|||||||+|||+||..          +.|||.|++|++|..++|+.|+|++..+........+..   
T Consensus        51 iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~  130 (282)
T COG5169          51 ILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMM  130 (282)
T ss_pred             hhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCcccc
Confidence            7999999999999999999999999971          249999999999999999999998876653211110000   


Q ss_pred             c-c-CccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           68 N-E-GSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDS  117 (135)
Q Consensus        68 ~-~-~~~~~~~~~~~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~  117 (135)
                      + . +..+..++......+.|...+..++.....|+.-+..-......+++.
T Consensus       131 ~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~  182 (282)
T COG5169         131 NIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEYNYRNLRTIDDINAM  182 (282)
T ss_pred             chhhhhhhchhcccCcchhHHhhhhHHHhhhhccccchhhhcccccchhhhc
Confidence            0 0 011122223334456666666666666666555444333333333333

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=88.71  E-value=1.4  Score=26.63  Aligned_cols=28  Identities=32%  Similarity=0.394  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           82 NHLLLMEENESLKRERLQLQMQIAEFKA  109 (135)
Q Consensus        82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~  109 (135)
                      .+..|..+++.|.+|+..|+.++..++.
T Consensus        13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~   40 (45)
T PF02183_consen   13 SYDSLKAEYDSLKKENEKLRAEVQELKE   40 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566667777777777777777766654

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function

Probab=88.06  E-value=1.4  Score=34.48  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=0.0

Q ss_pred             ceeecCCcCCCChhchHHHhh
Q 032729           31 WEFRHDKFRRGCRHLLVEIVR   51 (135)
Q Consensus        31 ~ef~h~~F~rg~~~ll~~IkR   51 (135)
                      |==.||.|-..+|+||..|.-
T Consensus        14 yL~~~PdFf~~~~~ll~~l~~   34 (225)
T PF04340_consen   14 YLRQHPDFFERHPELLAELRL   34 (225)
T ss_dssp             ---------------------
T ss_pred             HHHhCcHHHHhCHHHHHHcCC
Confidence            344799999999999998874

; PDB: 3E98_B.

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=88.06  E-value=1.9  Score=36.67  Aligned_cols=29  Identities=28%  Similarity=0.497  Sum_probs=24.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           81 NNHLLLMEENESLKRERLQLQMQIAEFKA  109 (135)
Q Consensus        81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~  109 (135)
                      +...+|.+||.+||+|+..|+.++++++.
T Consensus        32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~   60 (420)
T PF07407_consen   32 DENFALRMENHSLKKENNDLKIEVERLEN   60 (420)
T ss_pred             hhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999999998863

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=88.02  E-value=2.8  Score=26.54  Aligned_cols=37  Identities=14%  Similarity=0.157  Sum_probs=28.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           81 NNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDS  117 (135)
Q Consensus        81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~  117 (135)
                      ..+..+...+..+++|+..++..+..+++...+|+.+
T Consensus         7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l   43 (55)
T PF05377_consen    7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSL   43 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666778888888888888888888887777764

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=86.97  E-value=2.1  Score=31.64  Aligned_cols=40  Identities=23%  Similarity=0.265  Sum_probs=32.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           80 HNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS  119 (135)
Q Consensus        80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~  119 (135)
                      +.....|.+|++.|+.|+..+..|+...+.+++.+..+-.
T Consensus        80 E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~  119 (135)
T KOG4196|consen   80 EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV  119 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3446778888888899999999999888889998888764

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=81.34  E-value=2.9  Score=29.68  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           82 NHLLLMEENESLKRERLQLQMQIAEFKA  109 (135)
Q Consensus        82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~  109 (135)
                      .+..|.+||..|+.||..|+..+.....
T Consensus        30 ~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen   30 QLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4677788888888888888888877643

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=81.17  E-value=13  Score=24.51  Aligned_cols=37  Identities=24%  Similarity=0.301  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032729           86 LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYM  122 (135)
Q Consensus        86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m  122 (135)
                      |.++|..|..++..|..+..++++-.+..-.-|..+.
T Consensus        30 Lke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL   66 (72)
T PF06005_consen   30 LKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333355555555555544444444444333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK10963 hypothetical protein; Provisional

Probab=81.05  E-value=6.9  Score=30.76  Aligned_cols=18  Identities=11%  Similarity=0.098  Sum_probs=15.1

Q ss_pred             ecCCcCCCChhchHHHhh
Q 032729           34 RHDKFRRGCRHLLVEIVR   51 (135)
Q Consensus        34 ~h~~F~rg~~~ll~~IkR   51 (135)
                      .||+|--.+|+||..|.-
T Consensus        14 ~~PdFf~~h~~Ll~~L~l   31 (223)
T PRK10963         14 QNPDFFIRNARLVEQMRV   31 (223)
T ss_pred             HCchHHhhCHHHHHhccC
Confidence            699999999999986543

>smart00338 BRLZ basic region leucin zipper

Probab=80.90  E-value=4.3  Score=25.63  Aligned_cols=28  Identities=32%  Similarity=0.392  Sum_probs=15.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           82 NHLLLMEENESLKRERLQLQMQIAEFKA  109 (135)
Q Consensus        82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~  109 (135)
                      ....|..+|..|+.++..|..++..++.
T Consensus        34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~   61 (65)
T smart00338       34 KVEQLEAENERLKKEIERLRRELEKLKS   61 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555566666666655555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		2e-08
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		4e-06
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		5e-06
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		6e-06
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		6e-06
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		6e-06
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		5e-05
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		7e-05

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 11/68 (16%)
Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKK---------TSPKQ--WEFRHDKFRRGCRHLLVEI 49
           +LPKYFKHNN +SF+RQLN YGF+K           P++   EF+H  F RG   LL  I
Sbjct: 58  VLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENI 117
Query: 50  VRKKSDPS 57
            RK +  S
Sbjct: 118 KRKVTSVS 125

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 11/48 (22%)
Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
           +LPKYFKH+NF+SF+RQLN YG+ K            +  +WEF +++
Sbjct: 53  VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 100

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTSP----------KQWEFRHDKFRRGCRHLLVEIV 50
           +LP  +KHNN +SFIRQLN YGF K +            + EF H  F+R    LL +I 
Sbjct: 45  LLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIK 104
Query: 51  RK 52
           RK
Sbjct: 105 RK 106

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 1  MLPKYFKHNNFSSFIRQLNTYGFKKT 26
          +LPKYFKH+NF+SF+RQLN YG+ K 
Sbjct: 43 VLPKYFKHSNFASFVRQLNXYGWHKV 68

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 11/48 (22%)
Query: 1  MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
          +LPKYFKH+NF+SF+RQLN YG+ K            +  +WEF +++
Sbjct: 43 VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 90

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 11/48 (22%)
Query: 1  MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
          +LPKYFKH+NF+SF+RQLN YG+ K            +  +WEF +++
Sbjct: 41 VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 88

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 11/48 (22%)
Query: 1  MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
          +L KYFKH+NF+SF+RQLN YG+ K            +  +WEF +++
Sbjct: 41 VLAKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 88

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 11/48 (22%)
Query: 1  MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
          +L KYFKH+NF+SF+RQLN YG+ K            +  +WEF +++
Sbjct: 41 VLKKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
2ldu_A	125	Heat shock factor protein 1; structural genomics,	2e-25
1hks_A	106	Heat-shock transcription factor; transcription reg	4e-25
3hts_B	102	Heat shock transcription factor; transcription reg	4e-18

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score = 92.1 bits (229), Expect = 2e-25
 Identities = 31/67 (46%), Positives = 36/67 (53%), Gaps = 11/67 (16%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKK-----------TSPKQWEFRHDKFRRGCRHLLVEIV 50
           LPKYFKHNN +SF+RQLN YGF+K                 EF+H  F RG   LL  I 
Sbjct: 59  LPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIK 118

Query: 51  RKKSDPS 57
           RK +  S
Sbjct: 119 RKVTSVS 125

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score = 91.2 bits (227), Expect = 4e-25
 Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 10/61 (16%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTS----------PKQWEFRHDKFRRGCRHLLVEIVR 51
           LP  +KHNN +SFIRQLN YGF K +            + EF H  F+R    LL +I R
Sbjct: 46  LPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKR 105

Query: 52  K 52
           K
Sbjct: 106 K 106

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score = 72.9 bits (179), Expect = 4e-18
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 11/49 (22%)

Query: 1   MLPKYFKHNNFSSFIRQLNTYGFKKTS-----------PKQWEFRHDKF 38
           +LPKYFKH+NF+SF+RQLN YG+ K               +WEF +++ 
Sbjct: 53  VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
1hks_A	106	Heat-shock transcription factor; transcription reg	99.91
2ldu_A	125	Heat shock factor protein 1; structural genomics,	99.91
3hts_B	102	Heat shock transcription factor; transcription reg	99.72
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	91.24
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	91.24
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	90.88
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	89.86
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	88.8
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	87.83
3m48_A	33	General control protein GCN4; leucine zipper, synt	87.55
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	85.66
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	85.22
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	84.8
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	84.32
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	84.18
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	84.15
1uo4_A	34	General control protein GCN4; four helix bundle, c	83.44
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	83.1
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	82.14
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	81.71
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	81.65
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	81.6
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	80.22

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=99.91  E-value=6.3e-26  Score=159.83  Aligned_cols=52  Identities=52%  Similarity=0.847  Sum_probs=49.4

Q ss_pred             CCCCCCCcCChhhHHhhhcccCceeec----------CCcceeecCCcCCCChhchHHHhhh
Q 032729            1 MLPKYFKHNNFSSFIRQLNTYGFKKTS----------PKQWEFRHDKFRRGCRHLLVEIVRK   52 (135)
Q Consensus         1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~----------~~~~ef~h~~F~rg~~~ll~~IkRk   52 (135)
                      |||+||||+||+|||||||+|||+|+.          ++.|+|+||+|+||+|+||..|+||
T Consensus        45 vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           45 LLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             HhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence            799999999999999999999999985          4689999999999999999999996

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.91  E-value=6.2e-26  Score=164.30  Aligned_cols=55  Identities=55%  Similarity=0.898  Sum_probs=51.5

Q ss_pred             CCCCCCCcCChhhHHhhhcccCceeec-----------CCcceeecCCcCCCChhchHHHhhhcCC
Q 032729            1 MLPKYFKHNNFSSFIRQLNTYGFKKTS-----------PKQWEFRHDKFRRGCRHLLVEIVRKKSD   55 (135)
Q Consensus         1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~-----------~~~~ef~h~~F~rg~~~ll~~IkRk~~~   55 (135)
                      |||+||||+||+|||||||+|||+|+.           ++.|+|+||+|+||+|+||.+|+||++.
T Consensus        58 vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           58 VLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             HHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             HhHHhcCCCcHHHHHHHhcccCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence            689999999999999999999999984           3689999999999999999999999875

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.72  E-value=6.7e-19  Score=123.43  Aligned_cols=37  Identities=57%  Similarity=1.213  Sum_probs=35.1

Q ss_pred             CCCCCCCcCChhhHHhhhcccCceeec-----------CCcceeecCC
Q 032729            1 MLPKYFKHNNFSSFIRQLNTYGFKKTS-----------PKQWEFRHDK   37 (135)
Q Consensus         1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~-----------~~~~ef~h~~   37 (135)
                      |||+||+|+||+||+||||+|||+|+.           ++.|||+||+
T Consensus        53 VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           53 VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER  100 (102)
T ss_dssp             THHHHCSSCCHHHHHHHHHHTTEEECC---------CCSCCEEEEECC
T ss_pred             HHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCCCcCCeEecCCC
Confidence            799999999999999999999999997           6789999996

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=91.24  E-value=0.64  Score=28.12  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           82 NHLLLMEENESLKRERLQLQMQIAEFKA  109 (135)
Q Consensus        82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~  109 (135)
                      .+..|..+++.|++||..|++|+.-=..
T Consensus         4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~   31 (54)
T 1deb_A            4 SYDQLLKQVEALKMENSNLRQELEDNSN   31 (54)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence            3567888999999999999988865443

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=91.24  E-value=0.57  Score=25.19  Aligned_cols=27  Identities=33%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKA  109 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~  109 (135)
                      ...|.+|+..|++|...|+-|++.+++
T Consensus         4 iaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            4 IAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            567888888888888888888888765

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=90.88  E-value=0.36  Score=32.24  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032729           86 LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYM  122 (135)
Q Consensus        86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m  122 (135)
                      +..+.+.|..||..|+.+|..++.....|-.+|.++.
T Consensus        41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p   77 (87)
T 1hjb_A           41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP   77 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            3344445555555555555555544444444444433

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=89.86  E-value=1.3  Score=27.41  Aligned_cols=37  Identities=30%  Similarity=0.243  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS  119 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~  119 (135)
                      ...|.++++.|..++..|..++..++.....|-..|.
T Consensus        25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~   61 (63)
T 2wt7_A           25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777777777777777666666555553

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=88.80  E-value=0.75  Score=27.82  Aligned_cols=30  Identities=20%  Similarity=0.076  Sum_probs=24.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           81 NNHLLLMEENESLKRERLQLQMQIAEFKAL  110 (135)
Q Consensus        81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~  110 (135)
                      .++..|..|+..|+.++..|..+++.++..
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~   48 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAK   48 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888888888888888888888877654

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=87.83  E-value=1.5  Score=29.16  Aligned_cols=43  Identities=28%  Similarity=0.346  Sum_probs=29.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032729           81 NNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMG  123 (135)
Q Consensus        81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~  123 (135)
                      .....|..||..|+.++..|..|+..++.+...+-+-+...|+
T Consensus        43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~~~   85 (87)
T 1hjb_A           43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSG   85 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhcccc
Confidence            3478899999999999999999999999887766665554444

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=87.55  E-value=1.1  Score=24.68  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           84 LLLMEENESLKRERLQLQMQIAEFKAL  110 (135)
Q Consensus        84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~  110 (135)
                      ..|.+.++.|-.++..|..|+.+++.+
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L   29 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKKL   29 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            457778888888888888888888764

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=85.66  E-value=3  Score=23.30  Aligned_cols=30  Identities=23%  Similarity=0.221  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKALEI  112 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~  112 (135)
                      +..|.+.++.|..++..|..++++++.+..
T Consensus         3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~   32 (36)
T 1kd8_B            3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA   32 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            456788889999999999999999887643

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=85.22  E-value=3.5  Score=25.42  Aligned_cols=32  Identities=16%  Similarity=0.098  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKALEIKL  114 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl  114 (135)
                      ...|..+.+.|..+|..|..++..++.-...|
T Consensus        25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L   56 (63)
T 1ci6_A           25 QEALTGECKELEKKNEALKERADSLAKEIQYL   56 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666666666666665544333

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=84.80  E-value=2  Score=26.21  Aligned_cols=27  Identities=26%  Similarity=0.209  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKA  109 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~  109 (135)
                      ...|..+|..|..++..|+.|+..+++
T Consensus        31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~   57 (61)
T 1t2k_D           31 AEDLSSLNGQLQSEVTLLRNEVAQLKQ   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555554443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=84.32  E-value=4  Score=24.77  Aligned_cols=36  Identities=22%  Similarity=0.143  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSL  118 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L  118 (135)
                      ...|..+++.|..++..|..++..++.....|-+.|
T Consensus        24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            577888999999999999999999988776665554

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=84.18  E-value=3  Score=22.86  Aligned_cols=29  Identities=10%  Similarity=0.116  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKALE  111 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~  111 (135)
                      +..|.+.++.|-.++..|..|+++++.+.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL   30 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKXLL   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35677888889999999999999888653

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=84.15  E-value=2.2  Score=25.68  Aligned_cols=29  Identities=21%  Similarity=0.133  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           88 EENESLKRERLQLQMQIAEFKALEIKLLD  116 (135)
Q Consensus        88 ~e~~~Lk~E~~~L~~el~~~k~~~~kll~  116 (135)
                      .+++.|+.|+..|+.++..++.....+-.
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~   47 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKA   47 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777777777665555443

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=83.44  E-value=2.5  Score=23.38  Aligned_cols=28  Identities=14%  Similarity=0.264  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKAL  110 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~  110 (135)
                      +..|.+.++.|-.++..|..|+++++.+
T Consensus         3 M~QLEdKVEeLl~~n~~Le~EV~RLk~L   30 (34)
T 1uo4_A            3 MKQIEDKGEEILSKLYHIENELARIKKL   30 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3567788888999999999999988765

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=83.10  E-value=3.5  Score=22.71  Aligned_cols=29  Identities=10%  Similarity=0.047  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKALE  111 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~  111 (135)
                      +..|.+.++.|-.++..|..|+++++.+.
T Consensus         3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll   31 (34)
T 3c3f_A            3 MXQIEXKLEXILSXLYHXENEXARIXKLL   31 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45677888889999999999999888653

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=82.14  E-value=4  Score=22.50  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKAL  110 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~  110 (135)
                      +..|.+.++.|-.++..|..|+.+++.+
T Consensus         3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l   30 (34)
T 2oxj_A            3 MXQLEXKVXELLXKNXHLEXEVXRLKXL   30 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4567777788888888888888887764

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=81.71  E-value=3.1  Score=25.58  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=28.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           79 EHNNHLLLMEENESLKRERLQLQMQIAEFKALE  111 (135)
Q Consensus        79 ~~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~  111 (135)
                      .+.....|..+|..|..++..|+.++..++.+.
T Consensus        28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l   60 (63)
T 2wt7_A           28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFIL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999999988754

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=81.65  E-value=1.7  Score=28.31  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           84 LLLMEENESLKRERLQLQMQIAEFK  108 (135)
Q Consensus        84 ~~L~~e~~~Lk~E~~~L~~el~~~k  108 (135)
                      ..|..||..|+.++..|..|+..++
T Consensus        46 ~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           46 LELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444443

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=81.60  E-value=4.1  Score=22.71  Aligned_cols=29  Identities=21%  Similarity=0.225  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           83 HLLLMEENESLKRERLQLQMQIAEFKALE  111 (135)
Q Consensus        83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~  111 (135)
                      +..|.+.++.|-.++..|..|+.+++.+.
T Consensus         3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll   31 (36)
T 1kd8_A            3 VKQLEAEVEEIESEVWHLENEVARLEKEN   31 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            35678888889999999999998888754

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=80.22  E-value=3.3  Score=25.55  Aligned_cols=33  Identities=27%  Similarity=0.204  Sum_probs=28.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729           80 HNNHLLLMEENESLKRERLQLQMQIAEFKALEI  112 (135)
Q Consensus        80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~  112 (135)
                      +.....|..+|..|+.++..|+.|+..++.+.-
T Consensus        29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           29 TGECKELEKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788999999999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	1e-16
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	4e-13

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score = 68.0 bits (166), Expect = 1e-16
 Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 10/61 (16%)

Query: 2   LPKYFKHNNFSSFIRQLNTYGFKKTS----------PKQWEFRHDKFRRGCRHLLVEIVR 51
           LP  +KHNN +SFIRQLN YGF K +            + EF H  F+R    LL +I R
Sbjct: 46  LPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKR 105

Query: 52  K 52
           K
Sbjct: 106 K 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score = 58.7 bits (142), Expect = 4e-13
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 11/48 (22%)

Query: 2  LPKYFKHNNFSSFIRQLNTYGFKKTS-----------PKQWEFRHDKF 38
          LPKYFKH+NF+SF+RQLN YG+ K               +WEF +++ 
Sbjct: 44 LPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	99.84
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.57

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.84  E-value=1.5e-22  Score=140.71  Aligned_cols=52  Identities=52%  Similarity=0.847  Sum_probs=48.4

Q ss_pred             CCCCCCCcCChhhHHhhhcccCceeec----------CCcceeecCCcCCCChhchHHHhhh
Q 032729            1 MLPKYFKHNNFSSFIRQLNTYGFKKTS----------PKQWEFRHDKFRRGCRHLLVEIVRK   52 (135)
Q Consensus         1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~----------~~~~ef~h~~F~rg~~~ll~~IkRk   52 (135)
                      |||+||+|++|+||+||||+|||+|+.          ++.|+|+||+|+||+|+||..|+||
T Consensus        45 vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          45 LLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             HhhhhccccCHHHHHHHHHHCCCEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCC
Confidence            799999999999999999999999984          3568999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.57  E-value=1.6e-16  Score=107.71  Aligned_cols=38  Identities=55%  Similarity=1.180  Sum_probs=34.3

Q ss_pred             CCCCCCCcCChhhHHhhhcccCceeec-----------CCcceeecCCc
Q 032729            1 MLPKYFKHNNFSSFIRQLNTYGFKKTS-----------PKQWEFRHDKF   38 (135)
Q Consensus         1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~-----------~~~~ef~h~~F   38 (135)
                      |||+||+|++|+||+||||+|||+|+.           ++.|||+|+.+
T Consensus        43 vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~~~~eF~h~~~   91 (92)
T d2htsa_          43 VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH   91 (92)
T ss_dssp             THHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CCCCEEEEESCC
T ss_pred             HHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCCCCEEEecCCC
Confidence            799999999999999999999999985           25799999854