Citrus Sinensis ID: 032743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQVN
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccEEEEEEEEEEcccccccEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEcccccEEcccccccccEEEcccccccEEEEEEEEEccccccEEEEEccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccEEEEEEEEEccccccEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEccccccEEcEcccccEEEccccccccEEEEEEEEccccccccEEEEccccccccccccEEEcEEEEc
Coil and Loop (DISEMBL)
MAQTTDAAAALLAHGvvdveyrrvscsypyknitikideksdyphYLGFVIWYQQGKKDITAVQLCETKNFAcklldrshgavwtttsppsgplslrmffsdedgddeswvvpvnnipqdwkagetydtgvqvn
Flexible Loop (DISEMBL)
MAQTTDAAAALLahgvvdveyrrvscsypyknitikideksdyPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVwtttsppsgplsLRMFFSDEDGDDESWVVPvnnipqdwkagetydtgvqvn
Low Complexity Region (SEG)
MAQTTDaaaallaHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQVN
Disordered region (IsUnstruct)
*******AAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTT**********MFF********SWVVPVNNIPQDWKA***********
Disordered Region (DISOPRED)
**********LLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQVN
Disordered Region (DISEMBL)
MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQVN
Disordered Region (DISPRO)
****TDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQVN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q850K7	256	Expansin-like B1 OS=Oryza	yes	no	0.977	0.511	0.639	1e-47
Q10S70	279	Expansin-like A1 OS=Oryza	yes	no	0.932	0.448	0.382	6e-22
Q9SVE5	265	Expansin-like A2 OS=Arabi	yes	no	0.902	0.456	0.382	8e-21
Q9LZT5	263	Expansin-like A3 OS=Arabi	no	no	0.902	0.460	0.357	1e-19
Q9LZT4	265	Expansin-like A1 OS=Arabi	no	no	0.888	0.449	0.365	6e-19
Q7XCL0	275	Expansin-like A2 OS=Oryza	no	no	0.925	0.450	0.382	3e-18
O23547	250	Expansin-like B1 OS=Arabi	no	no	0.888	0.476	0.396	5e-18
Q8H274	276	Expansin-like A3 OS=Oryza	no	no	0.858	0.416	0.347	9e-16
Q5Z980	313	Expansin-like A4 OS=Oryza	no	no	0.962	0.412	0.313	2e-14
Q40638	267	Expansin-B1 OS=Oryza sati	no	no	0.880	0.441	0.346	3e-12

>sp|Q850K7|EXLB1_ORYSJ Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 102/136 (75%), Gaps = 5/136 (3%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MAQ+TDA  ALL  GVV +EYRRVSC+YP KNI  KI E S++P+YL F IWYQQG +DI
Sbjct: 120 MAQSTDAGTALLTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDI 179

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSD---EDGDDESWVVPVNNI 117
            AVQLCET N  C+LL R+HGAVW   SPPSGPLS+RM FS      GD  +W+VP N +
Sbjct: 180 IAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLSIRMLFSSGAPRGGD--TWLVPTNIV 237

Query: 118 PQDWKAGETYDTGVQV 133
           PQ+W AG TYD+GVQV
Sbjct: 238 PQNWTAGATYDSGVQV 253

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10S70|EXLA1_ORYSJ Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1

 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 3/128 (2%)

Query: 8   AAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCE 67
           AA+L     VDVEY+RV C Y ++++++++DE+S  P+ L     YQ G+ DI AV + +
Sbjct: 138 AASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQ 197

Query: 68  TKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWV-VPVNNIPQDWKAGET 126
             + + K + R HG  W+  + P GPL +R+  +   G D  WV      +P+ W+AGE 
Sbjct: 198 VGSSSWKFMTREHGPSWSMANAPPGPLQMRLVVT--GGYDGKWVWADREVLPRRWRAGEV 255

Query: 127 YDTGVQVN 134
           YDTGVQ+ 
Sbjct: 256 YDTGVQIT 263

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SVE5|EXLA2_ARATH Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)

Query: 11  LLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKN 70
           LL  G+VD+EYRRV C Y  K + ++++E S  P+YL   + YQ G+ ++ A+ + +  +
Sbjct: 128 LLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGS 187

Query: 71  FACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTG 130
                + RSHGAVW T   P+G L  R  F    G D   V     +P +W+AG++YD G
Sbjct: 188 SHWSYMTRSHGAVWVTDKVPNGALQFR--FVVTAGYDGKMVWSQRVLPANWEAGKSYDAG 245

Query: 131 VQV 133
           VQ+
Sbjct: 246 VQI 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZT5|EXLA3_ARATH Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 11  LLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKN 70
           LL  G+VDVEY+RV C+Y  +N+ ++++E S  P+YL   + YQ G+ ++  + +    +
Sbjct: 127 LLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGS 186

Query: 71  FACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTG 130
                + RSHGAVW T   P+G L  +  F+   G D   V     +P +W +G  YD G
Sbjct: 187 SQWSYMSRSHGAVWATDKVPTGALQFK--FTVTGGYDGKTVWSKRVLPANWNSGRIYDAG 244

Query: 131 VQV 133
           VQ+
Sbjct: 245 VQI 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZT4|EXLA1_ARATH Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 7/126 (5%)

Query: 11  LLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAV---QLCE 67
           LL  G+VD+EY+RV C Y  KN+ ++++E S  P+YL   + YQ G+ ++ ++   Q+  
Sbjct: 127 LLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGS 186

Query: 68  TKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETY 127
           + N+    + RSHGAVW T   P+G +  R  F    G D   +   + +P +W+AG+ Y
Sbjct: 187 SPNWG--YMTRSHGAVWVTDKVPTGAIQFR--FVVTGGYDGKMIWSQSVLPSNWEAGKIY 242

Query: 128 DTGVQV 133
           D GVQ+
Sbjct: 243 DAGVQI 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XCL0|EXLA2_ORYSJ Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 8   AAALLAHGVVDVEYRRVSCSYPY-KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLC 66
           AA L     VDVEY+RV C Y   +N++I+++EKS  P  L     YQ G+ DI AV + 
Sbjct: 133 AAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVA 192

Query: 67  ETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWV-VPVNNIPQDWKAGE 125
              +   K + R +G  W+T   P+GPL  R+  +   G D  WV      +P+ W AG 
Sbjct: 193 TVGSSNWKFMTRDYGPAWSTAQAPAGPLQFRVVVT--GGYDGKWVWADGEVLPRRWTAGR 250

Query: 126 TYDTGVQV 133
            YD GVQ+
Sbjct: 251 VYDAGVQI 258

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O23547|EXLB1_ARATH Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 11  LLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKN 70
           L + GVV+VEY+R+ C Y   N+  KI EKS  PHYL  ++ Y  G  DI AV++ +   
Sbjct: 129 LYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDC 188

Query: 71  FACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTG 130
              + + R  GAV    +PP G L+LR       G +  W+   N IP DW AG TYD+ 
Sbjct: 189 KEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGIN--WIQSPNAIPADWTAGATYDSN 246

Query: 131 V 131
           +
Sbjct: 247 I 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H274|EXLA3_ORYSJ Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 17  VDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLL 76
           + VEYRR+ C Y  KN++I ++E+S  P+ L     YQ G+ DI AV + +  +   + +
Sbjct: 144 LSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDWRFM 203

Query: 77  DRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWV-VPVNNIPQDWKAGETYDTGVQV 133
            R +G VW+    P+GPL  R   +   G D  WV      +P +W+ G+ YDTG ++
Sbjct: 204 TRVYGPVWSIDRAPNGPLQFRAVVT--GGYDGKWVWADREVLPANWQPGQVYDTGARI 259

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z980|EXLA4_ORYSJ Expansin-like A4 OS=Oryza sativa subsp. japonica GN=EXLA4 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 24/153 (15%)

Query: 4   TTDAAAALLAHGV----------VDVEYRRVSCSY-PYKNITIKIDEKSDYPHYLGFVIW 52
           T DA AA+   GV          ++V++RR+ C Y   + + ++++E S  P +L     
Sbjct: 136 TEDAFAAMAKQGVSAHELTRQRTLEVDFRRIPCEYRESRRLAVRVEEASRNPTHLAIRFL 195

Query: 53  YQQGKKDITAVQLCETKNFAC--------KLLDRSHGA--VWTTTSPPSGPLSLRMFFSD 102
           YQ G+ DI AV++ +              + + R  GA  VWTT+  P GPL LR+  + 
Sbjct: 196 YQGGQTDIAAVEIAQANATPPSSSYYSSWRYMTRRDGAPGVWTTSRAPVGPLRLRVVVT- 254

Query: 103 EDGDDESWVVPVNNI-PQDWKAGETYDTGVQVN 134
             G    W+     + P DW+ GE YDTG++V 
Sbjct: 255 -AGSGGKWLRSDGEVLPADWRPGEVYDTGLRVT 286

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40638|EXPB1_ORYSJ Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 9/127 (7%)

Query: 11  LLAHGVVDVEYRRVSCSYPY-KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETK 69
           L   G++D ++RRV C YP    IT  I EK+  P+YL  ++ Y  G  D+  V++ E  
Sbjct: 147 LRKAGIIDTQFRRVKCKYPADTKITFHI-EKASNPNYLALLVKYVAGDGDVVEVEIKEKG 205

Query: 70  NFACKLLDRSHGAVWT--TTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETY 127
           +   K L  S GA+W   T  P  GP S+R+  + E G+    ++  + IP  WKA   Y
Sbjct: 206 SEEWKALKESWGAIWRIDTPKPLKGPFSVRV--TTEGGEK---IIAEDAIPDGWKADSVY 260

Query: 128 DTGVQVN 134
            + VQ  
Sbjct: 261 KSNVQAK 267

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
224126571	232	hypothetical protein POPTRDRAFT_264663 [	0.992	0.573	0.873	7e-65
255575760	256	Major pollen allergen Ory s 1 precursor,	0.992	0.519	0.873	7e-64
356497060	255	PREDICTED: expansin-like B1-like [Glycin	1.0	0.525	0.828	2e-62
224138020	230	hypothetical protein POPTRDRAFT_423586 [	0.985	0.573	0.834	2e-61
255575762	256	Major pollen allergen Ory s 1 precursor,	0.992	0.519	0.805	2e-61
356540583	255	PREDICTED: expansin-like B1-like [Glycin	1.0	0.525	0.805	2e-59
297742137	238	unnamed protein product [Vitis vinifera]	0.992	0.558	0.791	1e-58
225427282	255	PREDICTED: expansin-like B1 [Vitis vinif	0.992	0.521	0.791	1e-58
356511293	250	PREDICTED: expansin-like B1-like [Glycin	1.0	0.536	0.768	3e-58
363807686	251	uncharacterized protein LOC100791557 pre	1.0	0.533	0.761	2e-57

>gi|224126571|ref|XP_002329587.1| hypothetical protein POPTRDRAFT_264663 [Populus trichocarpa] gi|222870296|gb|EEF07427.1| hypothetical protein POPTRDRAFT_264663 [Populus trichocarpa]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 117/134 (87%), Positives = 127/134 (94%), Gaps = 1/134 (0%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MAQTTDAAA+LLA GVVD+EYRRVSCSYPYKNITIKIDE S+YP+YLGFVIWYQQG+ DI
Sbjct: 99  MAQTTDAAASLLALGVVDIEYRRVSCSYPYKNITIKIDENSNYPYYLGFVIWYQQGRSDI 158

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAVQLCET+NF CKLLDRS+G+VWTTTSPPSGPLSLRM FSDE+G DE+WVVPVNNIP D
Sbjct: 159 TAVQLCETQNFVCKLLDRSYGSVWTTTSPPSGPLSLRMLFSDENG-DETWVVPVNNIPND 217

Query: 121 WKAGETYDTGVQVN 134
           WKAGETYDTGVQVN
Sbjct: 218 WKAGETYDTGVQVN 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575760|ref|XP_002528779.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis] gi|223531782|gb|EEF33601.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]

 Score =  248 bits (632), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 117/134 (87%), Positives = 126/134 (94%), Gaps = 1/134 (0%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MAQTTDAAA+LL+ GVVDVEYRRVSCSYP KNITIKIDE S+YP+YL FVIW+QQGK+DI
Sbjct: 123 MAQTTDAAASLLSLGVVDVEYRRVSCSYPNKNITIKIDENSNYPYYLAFVIWFQQGKQDI 182

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAVQLCET+NF CKLLDRS+GAVWTTTSPPSGPLSLRM FS EDG DE+WVVPVNNIPQD
Sbjct: 183 TAVQLCETQNFVCKLLDRSYGAVWTTTSPPSGPLSLRMLFSGEDG-DETWVVPVNNIPQD 241

Query: 121 WKAGETYDTGVQVN 134
           WKAGETYDTGVQVN
Sbjct: 242 WKAGETYDTGVQVN 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497060|ref|XP_003517382.1| PREDICTED: expansin-like B1-like [Glycine max]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/134 (82%), Positives = 124/134 (92%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MAQTTDAAA+LLA GVVD+EYRRV+CSYP KNITIKIDE S+ P+YL FVIWYQQG++DI
Sbjct: 121 MAQTTDAAASLLALGVVDIEYRRVACSYPDKNITIKIDESSNNPYYLAFVIWYQQGRRDI 180

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAVQLCET+NF C+LLDRSHGAVWTTTSPPSGPLSLRM FSDE+  +E+WVVPVNNIP D
Sbjct: 181 TAVQLCETQNFVCQLLDRSHGAVWTTTSPPSGPLSLRMLFSDEEEGEETWVVPVNNIPGD 240

Query: 121 WKAGETYDTGVQVN 134
           WKAGETYD+GVQVN
Sbjct: 241 WKAGETYDSGVQVN 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138020|ref|XP_002326498.1| hypothetical protein POPTRDRAFT_423586 [Populus trichocarpa] gi|222833820|gb|EEE72297.1| hypothetical protein POPTRDRAFT_423586 [Populus trichocarpa]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/133 (83%), Positives = 125/133 (93%), Gaps = 1/133 (0%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MAQTTDAAA+L+A GVVDVEY+RVSCSYP KNITIKIDE SD+P Y+GFV+WYQQG++DI
Sbjct: 99  MAQTTDAAASLIALGVVDVEYKRVSCSYPNKNITIKIDENSDHPSYMGFVVWYQQGRRDI 158

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAV LCET+NFACK+LDRS+GAVWTTTSPPSGPLSLRM FS+EDG DE+WVVPVNNIP D
Sbjct: 159 TAVHLCETQNFACKVLDRSYGAVWTTTSPPSGPLSLRMLFSEEDG-DETWVVPVNNIPND 217

Query: 121 WKAGETYDTGVQV 133
           WKAG+TYDTGVQV
Sbjct: 218 WKAGQTYDTGVQV 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575762|ref|XP_002528780.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis] gi|223531783|gb|EEF33602.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/134 (80%), Positives = 124/134 (92%), Gaps = 1/134 (0%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MAQT DAAA+LL+ GV+D+EYRR+SCSYP KN+T+KIDE S+YPHYL FV+WYQQGK+DI
Sbjct: 123 MAQTADAAASLLSLGVIDIEYRRISCSYPNKNVTVKIDESSNYPHYLAFVLWYQQGKRDI 182

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAVQLCET+NF CKLLDRS+GAVWTTTSPPSGPLSLRM FS +DG +E+WVVPVN+IP D
Sbjct: 183 TAVQLCETQNFVCKLLDRSYGAVWTTTSPPSGPLSLRMLFSGDDG-EETWVVPVNDIPND 241

Query: 121 WKAGETYDTGVQVN 134
           WKAGETYDTGVQVN
Sbjct: 242 WKAGETYDTGVQVN 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540583|ref|XP_003538767.1| PREDICTED: expansin-like B1-like [Glycine max]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/134 (80%), Positives = 124/134 (92%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MAQTTDAAA+LLA GVVD+EYRRV+CS+P KNITIKIDE S+ P+YL FVIWYQQG++DI
Sbjct: 121 MAQTTDAAASLLALGVVDIEYRRVACSFPDKNITIKIDESSNNPYYLAFVIWYQQGRRDI 180

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAVQLCET+NF CKLLDRSHGAVWTTTSPP GPLSLRM FSDE+ ++E+W+VPVNNIP D
Sbjct: 181 TAVQLCETQNFVCKLLDRSHGAVWTTTSPPRGPLSLRMLFSDEEEEEETWLVPVNNIPGD 240

Query: 121 WKAGETYDTGVQVN 134
           WKAGETYD+G+QVN
Sbjct: 241 WKAGETYDSGIQVN 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742137|emb|CBI33924.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/134 (79%), Positives = 121/134 (90%), Gaps = 1/134 (0%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MAQTTDAAA+LLA GVVD+EYRRVSCSYP KNITIKIDE S++P+Y+ FVIWYQQG KDI
Sbjct: 106 MAQTTDAAASLLALGVVDIEYRRVSCSYPSKNITIKIDENSNFPYYMAFVIWYQQGMKDI 165

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAVQLCET+NF CKLLDRS+G+VWTT SPPSG LSLRM FS +DG DE+WVVP+NNIP++
Sbjct: 166 TAVQLCETQNFVCKLLDRSYGSVWTTNSPPSGTLSLRMLFSGDDG-DETWVVPINNIPEN 224

Query: 121 WKAGETYDTGVQVN 134
           WKA + YDTGVQVN
Sbjct: 225 WKAADIYDTGVQVN 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427282|ref|XP_002278917.1| PREDICTED: expansin-like B1 [Vitis vinifera]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/134 (79%), Positives = 121/134 (90%), Gaps = 1/134 (0%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MAQTTDAAA+LLA GVVD+EYRRVSCSYP KNITIKIDE S++P+Y+ FVIWYQQG KDI
Sbjct: 123 MAQTTDAAASLLALGVVDIEYRRVSCSYPSKNITIKIDENSNFPYYMAFVIWYQQGMKDI 182

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAVQLCET+NF CKLLDRS+G+VWTT SPPSG LSLRM FS +DG DE+WVVP+NNIP++
Sbjct: 183 TAVQLCETQNFVCKLLDRSYGSVWTTNSPPSGTLSLRMLFSGDDG-DETWVVPINNIPEN 241

Query: 121 WKAGETYDTGVQVN 134
           WKA + YDTGVQVN
Sbjct: 242 WKAADIYDTGVQVN 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511293|ref|XP_003524361.1| PREDICTED: expansin-like B1-like [Glycine max]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 118/134 (88%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MA  TDAAA+LLA GVVD++YRRVSCSYP KNIT+KI E S+ PHYL FVIW+QQG +DI
Sbjct: 116 MALNTDAAASLLALGVVDIQYRRVSCSYPNKNITVKIHESSNNPHYLAFVIWFQQGNRDI 175

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAVQ+CET+NF CKLLDRSHGAVWTTT+PPSGPLSLRM FS E+  +E+WVVPVN IPQD
Sbjct: 176 TAVQICETQNFVCKLLDRSHGAVWTTTAPPSGPLSLRMLFSPEEEGEETWVVPVNKIPQD 235

Query: 121 WKAGETYDTGVQVN 134
           WKAG+TYD GVQV+
Sbjct: 236 WKAGQTYDLGVQVD 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807686|ref|NP_001241909.1| uncharacterized protein LOC100791557 precursor [Glycine max] gi|255647024|gb|ACU23980.1| unknown [Glycine max]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/134 (76%), Positives = 117/134 (87%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           MA  TDAAA LLA GV+D++YRRVSCSYP KNIT+KI E S+ PHY  FVIW+QQG +DI
Sbjct: 117 MALNTDAAAPLLALGVLDIQYRRVSCSYPNKNITVKIHESSNNPHYSAFVIWFQQGSRDI 176

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           TAVQLCET+NF CKLLDRSHGAVWTTT+PPSGPL+LRM FS E+  +E+WVVPVNNIPQD
Sbjct: 177 TAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLTLRMLFSPEEEGEETWVVPVNNIPQD 236

Query: 121 WKAGETYDTGVQVN 134
           WKAG+TYD GVQV+
Sbjct: 237 WKAGQTYDLGVQVD 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2121803	265	EXLA2 "expansin-like A2" [Arab	0.873	0.441	0.378	2.7e-20
TAIR|locus:2077167	263	EXLA3 "expansin-like A3" [Arab	0.873	0.444	0.352	3.1e-19
TAIR|locus:2077177	265	EXLA1 "expansin-like A1" [Arab	0.873	0.441	0.35	1.1e-18
TAIR|locus:2130444	250	EXLB1 "expansin-like B1" [Arab	0.858	0.46	0.401	7.5e-18
TAIR|locus:4515102723	223	EXPB6 "AT1G65681" [Arabidopsis	0.798	0.479	0.313	2.2e-11
TAIR|locus:2055594	259	EXPB4 "expansin B4" [Arabidops	0.798	0.413	0.295	9e-11
TAIR|locus:2018521	273	EXPB2 "expansin B2" [Arabidops	0.835	0.410	0.316	2.8e-08
TAIR|locus:2051338	271	EXPB1 "expansin B1" [Arabidops	0.768	0.380	0.277	5.9e-06
TAIR|locus:2123643	264	EXPB3 "expansin B3" [Arabidops	0.798	0.405	0.277	9.3e-06
TAIR|locus:2153569	255	EXPA2 "expansin A2" [Arabidops	0.805	0.423	0.301	1.9e-05

TAIR|locus:2121803 EXLA2 "expansin-like A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 45/119 (37%), Positives = 69/119 (57%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
             G+VD+EYRRV C Y  K + ++++E S  P+YL   + YQ G+ ++ A+ + +  +    
Sbjct:   132 GIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWS 191

Query:    75 LLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV 133
              + RSHGAVW T   P+G L  R  F    G D   V     +P +W+AG++YD GVQ+
Sbjct:   192 YMTRSHGAVWVTDKVPNGALQFR--FVVTAGYDGKMVWSQRVLPANWEAGKSYDAGVQI 248

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

TAIR|locus:2077167 EXLA3 "expansin-like A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 42/119 (35%), Positives = 67/119 (56%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
             G+VDVEY+RV C+Y  +N+ ++++E S  P+YL   + YQ G+ ++  + +    +    
Sbjct:   131 GIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWS 190

Query:    75 LLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV 133
              + RSHGAVW T   P+G L  +  F+   G D   V     +P +W +G  YD GVQ+
Sbjct:   191 YMSRSHGAVWATDKVPTGALQFK--FTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQI 247

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2077177 EXLA1 "expansin-like A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 42/120 (35%), Positives = 70/120 (58%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFA-C 73
             G+VD+EY+RV C Y  KN+ ++++E S  P+YL   + YQ G+ ++ ++ + +  +    
Sbjct:   131 GIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNW 190

Query:    74 KLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV 133
               + RSHGAVW T   P+G +  R  F    G D   +   + +P +W+AG+ YD GVQ+
Sbjct:   191 GYMTRSHGAVWVTDKVPTGAIQFR--FVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQI 248

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2130444 EXLB1 "expansin-like B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 47/117 (40%), Positives = 64/117 (54%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
             GVV+VEY+R+ C Y   N+  KI EKS  PHYL  ++ Y  G  DI AV++ +      +
Sbjct:   133 GVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWR 192

Query:    75 LLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGV 131
              + R  GAV    +PP G L+LR       G +  W+   N IP DW AG TYD+ +
Sbjct:   193 RMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGIN--WIQSPNAIPADWTAGATYDSNI 247

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS

GO:0009828 "plant-type cell wall loosening" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:4515102723 EXPB6 "AT1G65681" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 36/115 (31%), Positives = 61/115 (53%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
             GV+ V YRRV C Y   NI  ++D  ++ P+Y+ FV+ Y+ G  D+  +++ +  +    
Sbjct:   108 GVLRVYYRRVECLYRRTNIAFRMDPGAN-PYYISFVVEYENGDGDLAYIEI-QPADGEFI 165

Query:    75 LLDRSHGAVW--TTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETY 127
              +     AVW  ++ SP +GP ++R+       +    V+  N IP +WK  ETY
Sbjct:   166 PMQEMRSAVWKISSGSPLTGPFNIRL----TSAESHKVVLAYNVIPANWKPNETY 216

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2055594 EXPB4 "expansin B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 9.0e-11, P = 9.0e-11
 Identities = 34/115 (29%), Positives = 60/115 (52%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
             GV+ V Y+R +C Y   NI  ++D  ++ P+Y+ FV+ Y+ G  D++ V++ +    +  
Sbjct:   145 GVIRVNYKRAACLYRGTNIVFRMDAGAN-PYYISFVVEYENGDGDLSNVEI-QPAGGSFI 202

Query:    75 LLDRSHGAVWTTTSPPS--GPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETY 127
              +     AVW   S  +  GP ++R+      G+    +V  N IP +WK  E+Y
Sbjct:   203 SMQEMRSAVWKVNSGSALRGPFNIRL----TSGESHKVIVAYNVIPANWKPDESY 253

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2018521 EXPB2 "expansin B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 38/120 (31%), Positives = 63/120 (52%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
             G + + Y++V C+Y  K +T ++D+ S+   +   ++ Y  G  +I  ++L +  +    
Sbjct:   157 GELQILYKKVECNYIGKTVTFQVDKGSNANSF-AVLVAYVNGDGEIGRIELKQALDSDKW 215

Query:    75 L-LDRSHGAVWT--TTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGV 131
             L + +S GAVW    +SP   PLSLR+  S E G     VV  N IP +W+ G  Y + V
Sbjct:   216 LSMSQSWGAVWKLDVSSPLRAPLSLRVT-SLESGKT---VVASNVIPANWQPGAIYKSNV 271

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2051338 EXPB1 "expansin B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 30/108 (27%), Positives = 55/108 (50%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKS-DYPHYLGFVIWYQQGKKDITAVQLCETKNFAC 73
             G++++ YRR +C Y  KNI   ++  S DY  +L  +I Y+ G+ DI ++ + +  +   
Sbjct:   153 GLLNILYRRTACKYRGKNIAFHVNAGSTDY--WLSLLIEYEDGEGDIGSMHIRQAGSKEW 210

Query:    74 KLLDRSHGAVWTTTSPP-SGPLSLRMF-FSDEDGDDESWVVPVNNIPQ 119
               +    GA W     P  GP S+++   S+      + V+P N +P+
Sbjct:   211 ISMKHIWGANWCIVEGPLKGPFSVKLTTLSNNKTLSATDVIPSNWVPK 258

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2123643 EXPB3 "expansin B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 33/119 (27%), Positives = 59/119 (49%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKS-DYPHYLGFVIWYQQGKKDITAVQLCETKNFAC 73
             G++ V YRR +C Y  KNI   ++E S D+  +L  ++ ++ G+ DI ++ + +    A 
Sbjct:   146 GLIPVIYRRTACKYRGKNIAFHVNEGSTDF--WLSLLVEFEDGEGDIGSMHIRQAG--AR 201

Query:    74 KLLDRSH--GAVWTTTSPP-SGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDT 129
             + L+  H  GA W     P  GP S+++      G   S     + +P++W    TY +
Sbjct:   202 EWLEMKHVWGANWCIIGGPLKGPFSIKLTTLSA-GKTLS---ATDVVPRNWAPKATYSS 256

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0006949 "syncytium formation" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 35/116 (30%), Positives = 55/116 (47%)

Query:    15 GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
             G+V V +RRV C    K   I+     + P++   +I    G  DI AV L  +K    +
Sbjct:   146 GIVPVAFRRVPCE---KGGGIRFTINGN-PYFDLVLITNVGGAGDIRAVSLKGSKTDQWQ 201

Query:    75 LLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTG 130
              + R+ G  W + +   G  SL    +D DG     VV  + +P DW+ G+T++ G
Sbjct:   202 SMSRNWGQNWQSNTYLRGQ-SLSFQVTDSDGRT---VVSYDVVPHDWQFGQTFEGG 253

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
PLN03023	247	PLN03023, PLN03023, Expansin-like B1; Provisional	1e-37
pfam01357	82	pfam01357, Pollen_allerg_1, Pollen allergen	4e-08
PLN00115	118	PLN00115, PLN00115, pollen allergen group 3; Provi	6e-04
PLN00050	247	PLN00050, PLN00050, expansin A; Provisional	0.003

>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional

 Score =  127 bits (320), Expect = 1e-37
 Identities = 55/126 (43%), Positives = 78/126 (61%), Gaps = 2/126 (1%)

Query: 8   AAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCE 67
           AA L A+GVVDVEYRR+ C Y   N+  K+ E S +P YL  V+ YQ G+ DI AV++ +
Sbjct: 123 AAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQ 182

Query: 68  TKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETY 127
                 + + +++GAVW   +PP GP++LR   S   G  ++WV   N IP DWKAG  Y
Sbjct: 183 EDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAG--QTWVQAKNVIPSDWKAGVAY 240

Query: 128 DTGVQV 133
           D+ +Q+
Sbjct: 241 DSNIQL 246

Length = 247

>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen

 Score = 47.2 bits (113), Expect = 4e-08
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 33  ITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTT-TSPPS 91
           +   ++  S+ P++L  ++    G  DI AV++ E  +     + R+ GA W + +    
Sbjct: 1   VRFTVNGGSN-PYFLAVLVENVGGDGDIVAVEIKEAGSGEWIPMSRNWGANWQSDSVLLG 59

Query: 92  GPLSLRMFFSDEDGDDESWVVPVNNIP 118
           GPLS R   S + G     +V  N IP
Sbjct: 60  GPLSFR-VTSSDSG---KTLVADNVIP 82

This family contains allergens lol PI, PII and PIII from Lolium perenne. Length = 82

>gnl|CDD|177729 PLN00115, PLN00115, pollen allergen group 3; Provisional

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 76  LDRSHGAVWT--TTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV 133
           L  S    WT  + +P  GP S+R  F  + G    + V  + IP+ +KAG  Y TG+QV
Sbjct: 64  LKESSTNTWTLKSKAPLKGPFSVR--FLVKGG---GYRVVDDVIPESFKAGSVYKTGIQV 118

Length = 118

>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%)

Query: 15  GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFV-IWYQQGKKDITAVQLCETKNFAC 73
           G+V V+YRRV+C      I   I+  S    Y   V I    G  DI AV +  +K+   
Sbjct: 139 GIVPVQYRRVACR-KSGGIRFTINGHS----YFNLVLITNVGGAGDIVAVSIKGSKS-NW 192

Query: 74  KLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQ 132
           + + R+ G  W + S  +G  +L    +  DG     V+  N  P +W  G+TY TG+Q
Sbjct: 193 QAMSRNWGQNWQSNSYLNGQ-ALSFKVTTSDGRT---VISNNAAPSNWAFGQTY-TGMQ 246

Length = 247

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PLN03023	247	Expansin-like B1; Provisional	100.0
PLN00193	256	expansin-A; Provisional	100.0
PLN00050	247	expansin A; Provisional	100.0
PLN00115	118	pollen allergen group 3; Provisional	100.0
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	100.0
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	99.4

>PLN03023 Expansin-like B1; Provisional

Probab=100.00  E-value=2.2e-47  Score=306.47  Aligned_cols=131  Identities=42%  Similarity=0.806  Sum_probs=117.6

Q ss_pred             CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743            1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH   80 (134)
Q Consensus         1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~   80 (134)
                      ||+|+ ++++|+++|+|||+||||||.++|+||+|+|+++|++|+||+|+|+|++|+|||++||||++++++|++|+|+|
T Consensus       117 iA~pg-~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnw  195 (247)
T PLN03023        117 LARPN-MAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAY  195 (247)
T ss_pred             HhCcc-ccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCC
Confidence            44444 24556999999999999999999999999999999669999999999999999999999998888999999999


Q ss_pred             CCeeeeCCCCCCCeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCCC
Q 032743           81 GAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQVN  134 (134)
Q Consensus        81 Ga~W~~~~~l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf~  134 (134)
                      ||+|+++++|+|||+||++++.+  ++.++++++||||++|++|+||++++||+
T Consensus       196 Ga~W~~~~~l~Gp~slrf~v~~~--~g~~~vva~nViPa~Wk~G~TY~s~vq~~  247 (247)
T PLN03023        196 GAVWDMPNPPKGPITLRFQVSGS--AGQTWVQAKNVIPSDWKAGVAYDSNIQLD  247 (247)
T ss_pred             cceeEcCCCCCCceeEEEEEEeC--CCcEEEEECceeCCCCCCCCEEecccccC
Confidence            99999999999999999988754  22255999999999999999999999995

>PLN00193 expansin-A; Provisional

Probab=100.00  E-value=4.6e-44  Score=288.55  Aligned_cols=123  Identities=24%  Similarity=0.387  Sum_probs=118.1

Q ss_pred             CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743            1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH   80 (134)
Q Consensus         1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~   80 (134)
                      |++++|.+++.+++|+|||+||||||.++| +|+|+|++   |+||++|+|+|++|+|||++|+||+++ ++|++|+|+|
T Consensus       133 LS~~AF~~iA~~~~Giv~V~yrRVpC~~~G-~i~f~v~g---n~y~~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~w  207 (256)
T PLN00193        133 MAQPAWEKIGIYRGGIVPVLFQRVPCKKHG-GVRFTING---RDYFELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNW  207 (256)
T ss_pred             cCHHHHHHHhhhcCCeEeEEEEEeccccCC-CcEEEEcC---CccEEEEEEEEeCCCccEEEEEEecCC-CCeeECcccc
Confidence            789999999999999999999999999999 99999997   799999999999999999999999875 5899999999


Q ss_pred             CCeeeeCCCCCC-CeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCC
Q 032743           81 GAVWTTTSPPSG-PLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV  133 (134)
Q Consensus        81 Ga~W~~~~~l~g-pls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf  133 (134)
                      ||+|+++++|.| |||||||+++|     +++++.||||++|+||+||++.+||
T Consensus       208 Ga~W~~~~~l~g~plsfRvts~~G-----~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        208 GANWQSNAYLDGQSLSFKVTTTDG-----QTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             cceeEecCCCCCCCEEEEEEEcCC-----eEEEECceeCCCCCCCCeEecCccC
Confidence            999999998888 99999999988     9999999999999999999999998

>PLN00050 expansin A; Provisional

Probab=100.00  E-value=4.2e-43  Score=281.81  Aligned_cols=122  Identities=30%  Similarity=0.431  Sum_probs=116.2

Q ss_pred             CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743            1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH   80 (134)
Q Consensus         1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~   80 (134)
                      |+.++|.+++.+++|+|||+||||||.++| ||+|+|++   ++||++|+|+|++|+|||++|+||+++ ++|++|+|+|
T Consensus       125 LS~~AF~~iA~~~aGii~V~yRRVpC~~~G-~i~f~v~g---~sy~~~vlv~nv~G~gdi~~V~ikg~~-~~W~~M~R~w  199 (247)
T PLN00050        125 LSQPVFQKIAQYKAGIVPVQYRRVACRKSG-GIRFTING---HSYFNLVLITNVGGAGDIVAVSIKGSK-SNWQAMSRNW  199 (247)
T ss_pred             cCHHHHHHHhhhcCCeeeeEEEEecCcCCC-CeEEEEcC---CceeEEEEEEEcCCCccEEEEEEecCC-CCeeECcccc
Confidence            788999999999999999999999999999 99999998   679999999999999999999999874 6899999999


Q ss_pred             CCeeeeCCCCCC-CeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCC
Q 032743           81 GAVWTTTSPPSG-PLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV  133 (134)
Q Consensus        81 Ga~W~~~~~l~g-pls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf  133 (134)
                      ||+|+++++|.| |||||||+++|     +++++.||||++|+||+||++. ||
T Consensus       200 Ga~W~~~~~l~g~~lsfRvt~~~G-----~~~~~~~V~Pa~W~~G~ty~~~-~f  247 (247)
T PLN00050        200 GQNWQSNSYLNGQALSFKVTTSDG-----RTVISNNAAPSNWAFGQTYTGM-QF  247 (247)
T ss_pred             CceeEccCCCCCCcEEEEEEecCC-----cEEEECceeCCCCCCCCeEecC-cC
Confidence            999999998878 99999999888     9999999999999999999994 88

>PLN00115 pollen allergen group 3; Provisional

Probab=100.00  E-value=9.2e-37  Score=221.58  Aligned_cols=109  Identities=30%  Similarity=0.448  Sum_probs=95.0

Q ss_pred             hhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceE-ecccCCCCeeeeCC-
Q 032743           11 LLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK-LLDRSHGAVWTTTS-   88 (134)
Q Consensus        11 ~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~-~M~r~~Ga~W~~~~-   88 (134)
                      |+..-.+.-.|.--.|   |++|+|+|+++| ||+||++++ |    +||.+||||++|+.+|+ +|+|+|||+|++++ 
T Consensus         7 ~~~~~~~a~l~~~~~~---g~~v~F~V~~gS-np~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~   77 (118)
T PLN00115          7 LLLAVALAALFAVGSC---ATEVTFKVGKGS-SSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSK   77 (118)
T ss_pred             HHHHHHHHHHhhhhhc---CCceEEEECCCC-CcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCC
Confidence            4444445555666689   479999999999 699997665 3    57999999999888999 99999999999765 


Q ss_pred             -CCCCCeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCC
Q 032743           89 -PPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV  133 (134)
Q Consensus        89 -~l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf  133 (134)
                       ||+||||||+++++|     ++++++||||++|+||+||++++||
T Consensus        78 ~pl~GPlS~R~t~~~G-----~~~va~nViPa~Wk~G~tY~s~vq~  118 (118)
T PLN00115         78 APLKGPFSVRFLVKGG-----GYRVVDDVIPESFKAGSVYKTGIQV  118 (118)
T ss_pred             CCCCCceEEEEEEeCC-----CEEEECceECCCCCCCCEEeccccC
Confidence             799999999999888     9999999999999999999999997

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=100.00  E-value=1.4e-32  Score=187.98  Aligned_cols=80  Identities=35%  Similarity=0.539  Sum_probs=68.9

Q ss_pred             eEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeC-CCCCCCeEEEEEEec-CCCCcceE
Q 032743           33 ITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTT-SPPSGPLSLRMFFSD-EDGDDESW  110 (134)
Q Consensus        33 i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~-~~l~gpls~Rvt~~~-G~~~~~~~  110 (134)
                      |+|+|+++| |||||+|+|+|++|+|||++||||++++.+|++|+|+|||+|+++ .++++|||||||+.+ |     ++
T Consensus         1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G-----~~   74 (82)
T PF01357_consen    1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVTSGDSG-----QT   74 (82)
T ss_dssp             EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEEETTTS-----EE
T ss_pred             CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEEEcCCC-----eE
Confidence            789999999 699999999999999999999999999889999999999999998 789999999999966 6     99


Q ss_pred             EEeccccC
Q 032743          111 VVPVNNIP  118 (134)
Q Consensus       111 vv~~~viP  118 (134)
                      ++++||||
T Consensus        75 vv~~nViP   82 (82)
T PF01357_consen   75 VVADNVIP   82 (82)
T ss_dssp             EEEEEEE-
T ss_pred             EEEecccC
Confidence            99999999

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=99.40  E-value=4.7e-12  Score=98.12  Aligned_cols=121  Identities=18%  Similarity=0.227  Sum_probs=96.0

Q ss_pred             CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743            1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH   80 (134)
Q Consensus         1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~   80 (134)
                      |+..+|.++-..+.|.|||+||-|+....| |+.++|++||+ .+|.+++|.|+.  =.+..+|+.+.|  .|..|.+.-
T Consensus       107 LSpNAFakIGnm~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs-~WWAAIQVRnH~--yPV~KlE~~qdg--~WinlpK~d  180 (232)
T COG4305         107 LSPNAFAKIGNMKQGRIPVQWRVVKAPVTG-NFTYRIKEGSS-RWWAAIQVRNHK--YPVMKLEYEQDG--KWINLPKMD  180 (232)
T ss_pred             cChHHHhhhcchhcCccceeEEEecccccc-cEEEEEecCCc-cceeeeeeeccc--CceEEEEEecCC--eEeeccccc
Confidence            566789899999999999999999999999 99999999995 999999999986  579999999874  899998876


Q ss_pred             CCeeeeCCCCCCCeEEEEEEecCCCCcceEEEeccccCCCCcCC--cEEe--CCCCCC
Q 032743           81 GAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAG--ETYD--TGVQVN  134 (134)
Q Consensus        81 Ga~W~~~~~l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G--~tY~--s~~qf~  134 (134)
                      .+.+--.+.-.+||++|+|+-.|     +.++  |-+|.-=+.+  +.|.  ..+||+
T Consensus       181 YNhFVgT~LG~~pL~~RmTDIRG-----~~l~--DtlP~Lpk~asSKaY~V~G~VQFs  231 (232)
T COG4305         181 YNHFVGTNLGTGPLKVRMTDIRG-----KVLK--DTLPKLPKSASSKAYTVPGHVQFS  231 (232)
T ss_pred             cceeeccccCCCceEEEEeeccc-----ceee--cccccccccccCCceeecceeecC
Confidence            66555555567899999999887     6554  3455433322  2232  456774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
2hcz_X	245	Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans		1e-09
1n10_A	241	Crystal Structure Of Phl P 1, A Major Timothy Grass		2e-08

>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 15  GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
           G++DVE+RRV C YP     +   EK   P+YL  ++ Y     DI  +++ +  +   K
Sbjct: 129 GIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWK 188
Query: 75  LLDRSHGAVWT--TTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQ 132
            +  S GA+W   T     GP S+R+  + E G     V+  + IP +W+    Y + VQ
Sbjct: 189 PMKLSWGAIWRMDTAKALKGPFSIRL--TSESGKK---VIAKDVIPANWRPDAVYTSNVQ 243

>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 15  GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
           G +++++RRV C YP         EK   P+YL  ++ Y  G  D+ AV + E       
Sbjct: 129 GELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWI 188
Query: 75  LLDRSHGAVWTTTSPP--SGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDT 129
            L  S GA+W   +P   +GP ++R  ++ E G   +     + IP+ WKA  +Y++
Sbjct: 189 ELKESWGAIWRIDTPDKLTGPFTVR--YTTEGG---TKTEAEDVIPEGWKADTSYES 240

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	4e-24
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	5e-24
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	7e-23
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	4e-20
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	4e-20
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	6e-13

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100

 Score = 88.4 bits (219), Expect = 4e-24
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 31  KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWT--TTS 88
             +T  + + SD P  L   I Y +    +  V+L +  +   + L +  G VW   ++ 
Sbjct: 2   VQVTFTVQKGSD-PKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSK 59

Query: 89  PPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQ 132
           P  GP + R  F  + G      V    IP  +  G+TY    Q
Sbjct: 60  PLVGPFNFR--FMSKGG---MRNVFDEVIPTAFSIGKTYKPEEQ 98

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108

 Score = 88.0 bits (218), Expect = 5e-24
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 21  YRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH 80
           +   S       +T  + + SD P  L   I Y +    +  V+L +  +   + L +  
Sbjct: 7   HHHGSA----VQVTFTVQKGSD-PKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK- 60

Query: 81  GAVWTTTS--PPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTG 130
           G VW   S  P  GP + R  F  + G      V    IP  +  G+TY   
Sbjct: 61  GNVWEVKSSKPLVGPFNFR--FMSKGG---MRNVFDEVIPTAFSIGKTYKPE 107

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245

 Score = 88.7 bits (219), Expect = 7e-23
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 3   QTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITA 62
                   +   G++DVE+RRV C YP     +   EK   P+YL  ++ Y     DI  
Sbjct: 117 AKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVL 176

Query: 63  VQLCETKNFACKLLDRSHGAVWTTTS--PPSGPLSLRMFFSDEDGDDESWVVPVNNIPQD 120
           +++ +  +   K +  S GA+W   +     GP S+R   + E G     V+  + IP +
Sbjct: 177 MEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIR--LTSESGK---KVIAKDVIPAN 231

Query: 121 WKAGETYDTGVQ 132
           W+    Y + VQ
Sbjct: 232 WRPDAVYTSNVQ 243

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96

 Score = 78.0 bits (192), Expect = 4e-20
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 10/101 (9%)

Query: 32  NITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--P 89
            +T  +++ S+   +L  ++ Y+     +  V+L E  +     + +  G VWT  S  P
Sbjct: 3   KVTFTVEKGSN-EKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEP 59

Query: 90  PSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTG 130
             GP + R  F  E G      V  + +P+ +  G TY   
Sbjct: 60  LQGPFNFR--FLTEKG---MKNVFDDVVPEKYTIGATYAPE 95

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241

 Score = 81.8 bits (201), Expect = 4e-20
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 3   QTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITA 62
                   L + G +++++RRV C YP         EK   P+YL  ++ Y  G  D+ A
Sbjct: 117 AKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVA 176

Query: 63  VQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWK 122
           V + E        L  S GA+W   +P        + ++ E G         + IP+ WK
Sbjct: 177 VDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGT---KTEAEDVIPEGWK 233

Query: 123 AGETYDT 129
           A  +Y++
Sbjct: 234 ADTSYES 240

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score = 61.8 bits (150), Expect = 6e-13
 Identities = 19/133 (14%), Positives = 48/133 (36%), Gaps = 11/133 (8%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDI 60
           ++         +  G +++++R V       N T +I E S    +    +  +  K  +
Sbjct: 83  LSPNAFRKIGNMKDGKINIKWRVVKAPIT-GNFTYRIKEGSS-RWWAAIQV--RNHKYPV 138

Query: 61  TAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQ- 119
             ++  +   +    +++     + +T+  +G L +RM     D   +     +  +P+ 
Sbjct: 139 MKMEYEKDGKWIN--MEKMDYNHFVSTNLGTGSLKVRM----TDIRGKVVKDTIPKLPES 192

Query: 120 DWKAGETYDTGVQ 132
                 T    VQ
Sbjct: 193 GTSKAYTVPGHVQ 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	100.0
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	100.0
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	100.0
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	100.0
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	100.0
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	100.0
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	97.08

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=100.00  E-value=8.9e-44  Score=284.31  Aligned_cols=127  Identities=28%  Similarity=0.559  Sum_probs=116.6

Q ss_pred             CCccHHHHHhh-------hhCceeeEEEEEEeeCCCC-cceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcc
Q 032743            1 MAQTTDAAAAL-------LAHGVVDVEYRRVSCSYPY-KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFA   72 (134)
Q Consensus         1 ma~~~~~~~~~-------~~~Giv~v~yrrV~C~~~G-~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~   72 (134)
                      |+.++|.+++.       +++|+|+|+||||+|.++| .+|+|+|++|| |+|||+|+|+|++|++||++||||+++++.
T Consensus       108 LS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs-~~~~~avlv~n~~g~g~V~~V~ik~~~~~~  186 (245)
T 2hcz_X          108 LSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGC-NPNYLAVLVKYVADDGDIVLMEIQDKLSAE  186 (245)
T ss_dssp             ECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCC-SSSCCCEEEECCCTTCCEEEEEBCCSSSCS
T ss_pred             cCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCC-CcceEEEEEEecCCCCCEEEEEEEeCCCCc
Confidence            45556655554       8999999999999999983 47999999999 699999999999999999999999997779


Q ss_pred             eEecccCCCCeeeeCCC--CCCCeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCC
Q 032743           73 CKLLDRSHGAVWTTTSP--PSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV  133 (134)
Q Consensus        73 W~~M~r~~Ga~W~~~~~--l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf  133 (134)
                      |++|+|+||++|++++.  |+||||||||+.+|     ++|++.||||++|++|+||++++||
T Consensus       187 W~~m~r~~G~~W~~~~~~~l~gpls~RvT~~~G-----~~v~~~nViP~~w~~g~ty~~~~qf  244 (245)
T 2hcz_X          187 WKPMKLSWGAIWRMDTAKALKGPFSIRLTSESG-----KKVIAKDVIPANWRPDAVYTSNVQF  244 (245)
T ss_dssp             CBCCEEEETTEEECSCCSSCCSSCCEEEEETTS-----CEEEESCSCCSSCCTTCEEECSCCC
T ss_pred             eeECccCCCCEEEECCCCCCCCCEEEEEEEeCC-----cEEEEeeeecCCCCCCCEEeCcccc
Confidence            99999999999999874  88999999999998     9999999999999999999999999

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=100.00  E-value=5.8e-43  Score=279.07  Aligned_cols=117  Identities=29%  Similarity=0.614  Sum_probs=108.7

Q ss_pred             HHhhhhCceeeEEEEEEeeCCCC-cceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeee
Q 032743            8 AAALLAHGVVDVEYRRVSCSYPY-KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTT   86 (134)
Q Consensus         8 ~~~~~~~Giv~v~yrrV~C~~~G-~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~   86 (134)
                      +.+|+++|+|+|+||||+|.++| .+|+|+|++|| |+|||+|+|+|++|+|||++||||+++++.|++|+|+||++|++
T Consensus       122 ~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs-~~~~~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~  200 (241)
T 1n10_A          122 EQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGS-NPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRI  200 (241)
T ss_dssp             HHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTC-BTTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEE
T ss_pred             ccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCC-CcceEEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEe
Confidence            34459999999999999999984 68999999999 59999999999999999999999999778999999999999999


Q ss_pred             CCC--CCCCeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCC
Q 032743           87 TSP--PSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTG  130 (134)
Q Consensus        87 ~~~--l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~  130 (134)
                      ++.  |+||||||||+++|     ++|++.||||++|+||+||+++
T Consensus       201 ~~~~~l~gpls~RvT~~~G-----~~v~~~nViP~~w~~g~ty~~~  241 (241)
T 1n10_A          201 DTPDKLTGPFTVRYTTEGG-----TKTEAEDVIPEGWKADTSYESK  241 (241)
T ss_dssp             ECSSCCCSCEEEEEEESSS-----CEEEEEEEECSSCCSSEEEEC-
T ss_pred             CCCCCCCCCEEEEEEEeCC-----cEEEEccccCCCCCCCCEEeCC
Confidence            874  88999999999998     9999999999999999999973

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A

Probab=100.00  E-value=1.7e-41  Score=239.19  Aligned_cols=96  Identities=25%  Similarity=0.387  Sum_probs=92.1

Q ss_pred             cceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCC--CCCCCeEEEEEEecCCCCcc
Q 032743           31 KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--PPSGPLSLRMFFSDEDGDDE  108 (134)
Q Consensus        31 ~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~--~l~gpls~Rvt~~~G~~~~~  108 (134)
                      ++|+|+|++|| |||||+|||+|++|+|||.+||||++++++|++|+| |||+|++++  +|+||||||+|++||     
T Consensus         2 ~~i~F~V~~gs-~~~~l~vlv~nv~G~gdI~~V~ik~s~t~~W~~M~r-wGa~W~~~s~~~l~GplSfRvt~~~G-----   74 (100)
T 3ft1_A            2 VQVTFTVQKGS-DPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTK-KGNVWEVKSSKPLVGPFNFRFMSKGG-----   74 (100)
T ss_dssp             BEEEEEECTTC-BTTEEEEEEEEECTTCCEEEEEEECTTCCCCEECEE-ETTEEEEECSSCCCSSEEEEEEETTC-----
T ss_pred             CCEEEEEecCC-CcceEEEEEEEcCCCccEEEEEEEeCCCCCeEEecc-cCCEeEeCCCCCCCCCEEEEEEEcCC-----
Confidence            48999999999 699999999999999999999999998778999999 999999987  799999999999998     


Q ss_pred             eEEEeccccCCCCcCCcEEeCCCCC
Q 032743          109 SWVVPVNNIPQDWKAGETYDTGVQV  133 (134)
Q Consensus       109 ~~vv~~~viP~~w~~G~tY~s~~qf  133 (134)
                      ++++++||||++|+||+||++++||
T Consensus        75 ~~~v~~nViPa~W~~G~ty~s~vq~   99 (100)
T 3ft1_A           75 MRNVFDEVIPTAFSIGKTYKPEEQE   99 (100)
T ss_dssp             CEEEEEEEECTTCCTTCEECCCCBC
T ss_pred             cEEEECeEeCCCCCCCcEEeccccc
Confidence            9999999999999999999999997

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}

Probab=100.00  E-value=8.1e-39  Score=228.22  Aligned_cols=96  Identities=24%  Similarity=0.377  Sum_probs=91.0

Q ss_pred             CCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCC--CCCCCeEEEEEEecCCCC
Q 032743           29 PYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--PPSGPLSLRMFFSDEDGD  106 (134)
Q Consensus        29 ~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~--~l~gpls~Rvt~~~G~~~  106 (134)
                      .|++|+|+|+++| |||||+|||+|++|+|||.+||||+.+++.|++|+|+ ||+|++++  +|+||||||||+++|   
T Consensus        11 ~g~~v~f~V~~~s-np~~l~VlV~nv~G~GdI~~V~Ik~~~~~~W~~M~rn-Ga~W~~~s~~~L~GplSfRvtts~G---   85 (108)
T 2jnz_A           11 SAVQVTFTVQKGS-DPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSKPLVGPFNFRFMSKGG---   85 (108)
T ss_dssp             CCCEEEEEECTTC-CSSEEEEEEEEEBTTBCEEEEEEECTTCCCCEECEEE-TTEEEEECSSCCCSSEEEEEEETTT---
T ss_pred             CCccEEEEEecCC-CccEEEEEEEEeCCCCCEEEEEEEeCCCCcEeEcccc-CCEeEeCCCCCCCCCEEEEEEEcCC---
Confidence            5789999999999 6999999999999999999999998767899999999 99999987  899999999999998   


Q ss_pred             cceEEEeccccCCCCcCCcEEeCCC
Q 032743          107 DESWVVPVNNIPQDWKAGETYDTGV  131 (134)
Q Consensus       107 ~~~~vv~~~viP~~w~~G~tY~s~~  131 (134)
                        ++++++||||++|+||+||++++
T Consensus        86 --~~~va~nViPa~W~~Gqty~s~v  108 (108)
T 2jnz_A           86 --MRNVFDEVIPTAFSIGKTYKPEE  108 (108)
T ss_dssp             --EEEEEEEEECSSCCTTCEECCCC
T ss_pred             --cEEEECeEECCCCCCCCEEeCCC
Confidence              99999999999999999999864

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A

Probab=100.00  E-value=9.3e-39  Score=223.74  Aligned_cols=92  Identities=23%  Similarity=0.425  Sum_probs=86.8

Q ss_pred             cceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCC--CCCCCeEEEEEEecCCCCcc
Q 032743           31 KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--PPSGPLSLRMFFSDEDGDDE  108 (134)
Q Consensus        31 ~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~--~l~gpls~Rvt~~~G~~~~~  108 (134)
                      ++|+|+|++|| |||||+|+|+|++  |||.+||||++++++|++|+|+|||+|++++  +|+||||||+|+++|     
T Consensus         2 ~~i~F~V~~gs-~~~~l~vlv~nv~--gdI~~V~ik~~~~~~W~~M~r~wGa~W~~~~~~~L~GplSfRvt~~~G-----   73 (96)
T 1bmw_A            2 PKVTFTVEKGS-NEKHLAVLVKYEG--DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLTEKG-----   73 (96)
T ss_dssp             CCCCCCCCTTC-SSSBCCBCCCCSS--SCCCCCEECCSSSSSCEECBCCSSSSBBCBCCSSCCCCCCBCCEETTT-----
T ss_pred             CCEEEEEecCC-CCceEEEEEEEeC--CCEEEEEEEECCCCcEEECccCcCceeEeCCCCCCCCCEEEEEEEcCC-----
Confidence            48999999999 6999999999998  8999999999778899999999999999998  689999999999988     


Q ss_pred             eEEEeccccCCCCcCCcEEeCC
Q 032743          109 SWVVPVNNIPQDWKAGETYDTG  130 (134)
Q Consensus       109 ~~vv~~~viP~~w~~G~tY~s~  130 (134)
                      ++++++||||++|+||+||+++
T Consensus        74 ~~~v~~nViP~~W~~G~ty~~~   95 (96)
T 1bmw_A           74 MKNVFDDVVPEKYTIGATYAPE   95 (96)
T ss_dssp             EECCBSSCSCSSCCSSSCCCC-
T ss_pred             cEEEEeeEeCCCCCCCCEEeCC
Confidence            9999999999999999999985

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=100.00  E-value=5.7e-35  Score=228.15  Aligned_cols=121  Identities=16%  Similarity=0.158  Sum_probs=110.8

Q ss_pred             CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743            1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH   80 (134)
Q Consensus         1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~   80 (134)
                      |++++|.+++.++.|+++|+||||+|.++| +|+|+|++|| |+||++|+|+|++|  ||++||||++  +.|++|+|+|
T Consensus        83 LS~~aF~~la~~~~G~i~v~~~~V~C~~~G-~i~f~v~~Gs-~~~~~~v~v~n~~g--~v~~v~i~~~--~~W~~m~r~~  156 (208)
T 3d30_A           83 LSPNAFRKIGNMKDGKINIKWRVVKAPITG-NFTYRIKEGS-SRWWAAIQVRNHKY--PVMKMEYEKD--GKWINMEKMD  156 (208)
T ss_dssp             ECHHHHHHHSCGGGSSEEEEEEEECCCCCS-CCEEEECTTC-SSSEEEEEEESCSS--CEEEEEEEET--TEEEEEEECT
T ss_pred             CCHHHHHHhcccCCCEEEEEEEEeCCCCCC-ceeEEEcCCC-CCceEEEEEEecCC--CEEEEEEecC--CcEEEccccc
Confidence            688999999999999999999999999999 9999999999 69999999999986  9999999987  4899999999


Q ss_pred             CCeeeeCCCCCCCeEEEEEEecCCCCcceEEEeccccCCCCcC----CcEEeCCCCCC
Q 032743           81 GAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKA----GETYDTGVQVN  134 (134)
Q Consensus        81 Ga~W~~~~~l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~----G~tY~s~~qf~  134 (134)
                      ++.|..+.++.+||+||||+.+|     +++  .+|||++|++    +.+|++++||+
T Consensus       157 ~n~~~~~~~~~~pls~rvT~~~G-----~~v--~~vip~~w~~~~~~~~~~~~~~Qf~  207 (208)
T 3d30_A          157 YNHFVSTNLGTGSLKVRMTDIRG-----KVV--KDTIPKLPESGTSKAYTVPGHVQFP  207 (208)
T ss_dssp             TSCEEEECCCSSSEEEEEEETTC-----CEE--EEEECCCCSSCCSSCEEEECCCCCC
T ss_pred             cceeecCCCCCCCEEEEEEECCC-----CEE--EEEECCCCccCcccceEEeCcCccC
Confidence            76665555677799999999998     888  7899999997    89999999995

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=97.08  E-value=0.0001  Score=56.28  Aligned_cols=28  Identities=7%  Similarity=0.208  Sum_probs=24.5

Q ss_pred             CCccHHHHHhhhhCceeeEEEEEEeeCCC
Q 032743            1 MAQTTDAAAALLAHGVVDVEYRRVSCSYP   29 (134)
Q Consensus         1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~   29 (134)
                      ||+|+ ..++.+.+|+|||+||||+|.+.
T Consensus       133 Ls~pa-~~Ia~~~~GivpV~yrrV~C~~~  160 (181)
T 1wc2_A          133 LENGR-SQVTGMGWNNPETTWEVVNCDSE  160 (181)
T ss_dssp             EECTT-STTGGGTCSSEEEEEEEECHHHH
T ss_pred             ccchH-HHhhhhcCCCceeEEEEEeCCCC
Confidence            67888 68888999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1n10a1	95	b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T	1e-22
d1whoa_	94	b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten	1e-18
d1n10a2	143	b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t	2e-04

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 83.2 bits (206), Expect = 1e-22
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 32  NITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--P 89
            +T  +++ S+ P+YL  ++ Y  G  D+ AV + E        L  S GA+W   +   
Sbjct: 2   KVTFHVEKGSN-PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDK 60

Query: 90  PSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDT 129
            +GP ++R  ++ E G   +     + IP+ WKA  +Y++
Sbjct: 61  LTGPFTVR--YTTEGG---TKTEAEDVIPEGWKADTSYES 95

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 72.5 bits (178), Expect = 1e-18
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 33  ITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSG 92
           +T  +++ S+   +L  ++ Y+     +  V+L E  +     + +  G VWT  S    
Sbjct: 4   VTFTVEKGSN-EKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPL 60

Query: 93  PLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETY 127
                  F  E G      V  + +P+ +  G TY
Sbjct: 61  QGPFNFRFLTEKG---MKNVFDDVVPEKYTIGATY 92

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 1   MAQTTDAAAALLAHGVVDVEYRRVSCSYP 29
                     L + G +++++RRV C YP
Sbjct: 113 AMAKKGDEQKLRSAGELELQFRRVKCKYP 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1n10a1	95	PHL P 1 C-terminal domain {Timothy grass (Phleum p	100.0
d1whoa_	94	PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1	100.0
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	97.76

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=3.8e-39  Score=223.41  Aligned_cols=93  Identities=27%  Similarity=0.544  Sum_probs=88.0

Q ss_pred             cceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCC--CCCCCeEEEEEEecCCCCcc
Q 032743           31 KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--PPSGPLSLRMFFSDEDGDDE  108 (134)
Q Consensus        31 ~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~--~l~gpls~Rvt~~~G~~~~~  108 (134)
                      ++|+|+|++|| |||||+|+|+|++|+|||.+||||++++++|++|+|+|||+|++++  +++||||||||+++|     
T Consensus         1 t~i~F~v~~gs-np~~lav~v~n~~g~gdI~~vevk~~g~~~W~~m~r~~ga~W~~~~~~~~~gpls~Rvt~~~G-----   74 (95)
T d1n10a1           1 TKVTFHVEKGS-NPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGG-----   74 (95)
T ss_dssp             CCCEEEECTTC-BTTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCSCEEEEEEESSS-----
T ss_pred             CcEEEEECCCC-CcceEEEEEEEcCCCCcEEEEEEEeCCCCcceEEEECCCCeEEECCCCCCCcCEEEEEEEcCC-----
Confidence            48999999999 5999999999999999999999999988899999999999999876  467899999999998     


Q ss_pred             eEEEeccccCCCCcCCcEEeC
Q 032743          109 SWVVPVNNIPQDWKAGETYDT  129 (134)
Q Consensus       109 ~~vv~~~viP~~w~~G~tY~s  129 (134)
                      +++++.||||++|+||+||+|
T Consensus        75 ~~~v~~nViP~~W~~G~tY~s   95 (95)
T d1n10a1          75 TKTEAEDVIPEGWKADTSYES   95 (95)
T ss_dssp             CEEEEEEEECSSCCSSEEEEC
T ss_pred             CEEEECceECCCCCCCCEEeC
Confidence            999999999999999999986

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=2.1e-35  Score=203.93  Aligned_cols=89  Identities=24%  Similarity=0.443  Sum_probs=83.3

Q ss_pred             ceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCC--CCCCCeEEEEEEecCCCCcce
Q 032743           32 NITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--PPSGPLSLRMFFSDEDGDDES  109 (134)
Q Consensus        32 ~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~--~l~gpls~Rvt~~~G~~~~~~  109 (134)
                      .|+|+|++|| |||||+|+|.|++|  ||.+|||+++++++|++|+|+|||+|++++  +++||||||||+++|     +
T Consensus         3 ~v~f~v~~GS-np~~lav~v~~~gg--~i~~vev~~~gs~~W~~M~r~wGa~W~~~~~~~~~gplsfRvt~~~G-----~   74 (94)
T d1whoa_           3 KVTFTVEKGS-NEKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLTEKG-----M   74 (94)
T ss_dssp             SEEEEECTTC-BTTEEEEEEEETTC--CEEEEEEECTTCCCCEECEECSTTEEEEECSSCCCSSEEEEEEETTS-----C
T ss_pred             cEEEEECCCC-CccEEEEEEEEcCC--CEEEEEEEECCCCceeECccCcCccEEECCCCCCCccEEEEEEEcCC-----C
Confidence            6999999999 59999999999985  799999999988899999999999998865  578899999999998     9


Q ss_pred             EEEeccccCCCCcCCcEEe
Q 032743          110 WVVPVNNIPQDWKAGETYD  128 (134)
Q Consensus       110 ~vv~~~viP~~w~~G~tY~  128 (134)
                      +++++||||++|++|+||+
T Consensus        75 ~~v~~nViP~~W~~G~ty~   93 (94)
T d1whoa_          75 KNVFDDVVPEKYTIGATYA   93 (94)
T ss_dssp             EEEEEEEECSSCCTTCEEC
T ss_pred             EEEEcceECCCCCCCCEEC
Confidence            9999999999999999996

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=97.76  E-value=1.1e-07  Score=70.89  Aligned_cols=35  Identities=9%  Similarity=0.126  Sum_probs=31.2

Q ss_pred             cHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEcc
Q 032743            4 TTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDE   39 (134)
Q Consensus         4 ~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~   39 (134)
                      ++|.+++.+++|+|+|+||||+|.+.| +++|++..
T Consensus       135 ~af~~ia~~~~G~v~V~yrrV~C~~~g-~~~~~~~~  169 (180)
T d1wc2a1         135 NGRSQVTGMGWNNPETTWEVVNCDSEH-NHDHRTPS  169 (180)
T ss_dssp             CTTSTTGGGTCSSEEEEEEEECHHHHH-HHCTTSCC
T ss_pred             HHHHHHhhhcCCcceeEEEEeeCCCcc-cccccccC
Confidence            578889999999999999999999888 88887765