Citrus Sinensis ID: 032754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMYGSGLAKISSLDDMMAFF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccccccEEEEccccccccEEEEEEEccccccccccccEEEEEEEccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHccccccEEEEccccccEEEEEEEEEEEEccccccEccEEEEEEEccccccccccEEEEccccccccEccccEEccHHHcccccccHHHHHHHHHHHHHHHHcccccccccEccc
Coil and Loop (DISEMBL)
msgggiargrLTEERKAwrknhphgfvakpetkdgsvnLMIWECiipgktgtdweggyfpltlyfsedypskppkckfpqgffhpnvypsgtvCLSIlnednvssscRFVIYFQIMYGSGLAKISSLDDMMAFF
Flexible Loop (DISEMBL)
msgggiargrlteerkawrknhphgfvakpetkdgsvnLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMYGSGLAKISSLDDMMAFF
Low Complexity Region (SEG)
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMYGSGLAKISSLDDMMAFF
Disordered region (IsUnstruct)
**********************************GSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMYGSGLAKIS*********
Disordered Region (DISOPRED)
******A***LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMYGSGL*K**SL*****FF
Disordered Region (DISEMBL)
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMYGSGLAKISSLDDMMAFF
Disordered Region (DISPRO)
*****IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMYGSGLAKISSLDDMMAFF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMYGSGLAKISSLDDMMAFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q42551	160	SUMO-conjugating enzyme S	yes	no	0.738	0.618	0.86	1e-48
Q9NGP4	159	Sumo-conjugating enzyme u	yes	no	0.731	0.616	0.686	9e-38
Q9W6H5	158	SUMO-conjugating enzyme U	yes	no	0.738	0.626	0.68	9e-35
Q28CQ4	158	SUMO-conjugating enzyme U	yes	no	0.738	0.626	0.68	9e-35
P63282	158	SUMO-conjugating enzyme U	N/A	no	0.738	0.626	0.68	9e-35
Q2EF73	158	SUMO-conjugating enzyme U	N/A	no	0.738	0.626	0.68	9e-35
P63281	158	SUMO-conjugating enzyme U	yes	no	0.738	0.626	0.68	9e-35
P63280	158	SUMO-conjugating enzyme U	yes	no	0.738	0.626	0.68	9e-35
P63279	158	SUMO-conjugating enzyme U	yes	no	0.738	0.626	0.68	9e-35
P63283	158	SUMO-conjugating enzyme U	yes	no	0.738	0.626	0.68	9e-35

>sp|Q42551|SCE1_ARATH SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1

 Score =  191 bits (484), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 93/100 (93%), Gaps = 1/100 (1%)

Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
             GIARGRL EERK+WRKNHPHGFVAKPET +DG+VNLM+W C IPGK GTDWEGG+FPL
Sbjct: 2   ASGIARGRLAEERKSWRKNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPL 61

Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           T++FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED
Sbjct: 62  TMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101

SUMO-conjugating enzyme that accepts the SUMO proteins from the E1 SUMO-activating heterodimer SAE1/SAE2 and catalyzes its covalent attachment to other proteins with the E3 SUMO ligases SIZ1 and MMS21. Associates with SIZ1 for sumoylation of the transcription factor GTE3.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9NGP4|UBC9_DICDI Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1

 Score =  155 bits (391), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 68/99 (68%), Positives = 83/99 (83%), Gaps = 1/99 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GI+  RL+EERK WR++HP+GF A+P T  DGS+NL +W C IPGKT T+WEGG +PL 
Sbjct: 2   AGISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLI 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           + F+EDYPSKPPKC+FP+ FFHPNVYPSGTVCLSILNE+
Sbjct: 62  MEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEE 100

Accepts the ubiquitin-like protein sumo from the E1 complex and catalyzes its covalent attachment to other proteins with the help of an E3 ligase.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9W6H5|UBC9A_DANRE SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation (By similarity). Mediates nuclear localization of vsx1. Required for progression through mitosis during organogenesis.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q28CQ4|UBC9_XENTR SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63282|UBC9_XENLA SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q2EF73|UBC9_SPETR SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation (By similarity). Necessary for sumoylation of FOXL2 and KAT5.

Spermophilus tridecemlineatus (taxid: 43179)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63281|UBC9_RAT SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation (By similarity). Necessary for sumoylation of FOXL2 and KAT5.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63280|UBC9_MOUSE SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture, chromosome segregation and embryonic viability. Necessary for sumoylation of FOXL2 and KAT5.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63279|UBC9_HUMAN SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101

Accepts the ubiquitin-like proteins SUMO1, SUMO2, SUMO3 and SUMO4 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Necessary for sumoylation of FOXL2 and KAT5. Essential for nuclear architecture and chromosome segregation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63283|UBC9_CHICK SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Essential for nuclear architecture and chromosome segregation.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
326508977	161	predicted protein [Hordeum vulgare subsp	0.761	0.633	0.902	2e-49
357147197	161	PREDICTED: SUMO-conjugating enzyme SCE1-	0.761	0.633	0.902	2e-49
351726411	160	uncharacterized protein LOC100500268 [Gl	0.738	0.618	0.91	6e-49
225458690	160	PREDICTED: SUMO-conjugating enzyme SCE1	0.738	0.618	0.91	1e-48
224063487	161	predicted protein [Populus trichocarpa]	0.753	0.627	0.892	1e-48
449484112	272	PREDICTED: SUMO-conjugating enzyme SCE1-	0.738	0.363	0.89	2e-48
147790674	160	hypothetical protein VITISV_001138 [Viti	0.738	0.618	0.91	2e-48
217071238	159	unknown [Medicago truncatula] gi|3885228	0.731	0.616	0.919	2e-48
115450403	160	Os03g0123100 [Oryza sativa Japonica Grou	0.738	0.618	0.91	2e-48
242042439	160	hypothetical protein SORBIDRAFT_01g04901	0.738	0.618	0.91	3e-48

>gi|326508977|dbj|BAJ86881.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 96/103 (93%), Gaps = 1/103 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSGGGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLMIW C IPGK GTDWE GY+
Sbjct: 1   MSGGGIARGRLAEERKAWRKNHPHGFVAKPETMADGSVNLMIWNCTIPGKQGTDWESGYY 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           PLTL+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+
Sbjct: 61  PLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDS 103

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147197|ref|XP_003574257.1| PREDICTED: SUMO-conjugating enzyme SCE1-like isoform 1 [Brachypodium distachyon]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 95/103 (92%), Gaps = 1/103 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSGGGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDWEGGYF
Sbjct: 1   MSGGGIARGRLAEERKAWRKNHPHGFVAKPETVADGSVNLMVWHCTIPGKQGTDWEGGYF 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           PLTL FSEDYPSKPPKCKFPQ FFHPNVYPSGTVCLSILNED+
Sbjct: 61  PLTLQFSEDYPSKPPKCKFPQNFFHPNVYPSGTVCLSILNEDS 103

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726411|ref|NP_001235590.1| uncharacterized protein LOC100500268 [Glycine max] gi|356511865|ref|XP_003524642.1| PREDICTED: SUMO-conjugating enzyme SCE1-like [Glycine max] gi|255629881|gb|ACU15291.1| unknown [Glycine max]

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 96/100 (96%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRLTEERK+WRKNHPHGFVAKPET  DG+VNLM+W C IPGKTGTDWEGGYFPLT
Sbjct: 3   GGIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHCTIPGKTGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDS 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458690|ref|XP_002284949.1| PREDICTED: SUMO-conjugating enzyme SCE1 [Vitis vinifera] gi|302142282|emb|CBI19485.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 94/100 (94%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETGPDGSVNLMVWHCTIPGKAGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDS 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063487|ref|XP_002301168.1| predicted protein [Populus trichocarpa] gi|118485912|gb|ABK94802.1| unknown [Populus trichocarpa] gi|118488765|gb|ABK96193.1| unknown [Populus trichocarpa] gi|222842894|gb|EEE80441.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/102 (89%), Positives = 97/102 (95%), Gaps = 1/102 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSGGGIARGRL EERKAWRKNHPHGFVAKP+   DGS++LM+W+CIIPGK GTDWEGGYF
Sbjct: 1   MSGGGIARGRLAEERKAWRKNHPHGFVAKPDNAPDGSLDLMMWKCIIPGKPGTDWEGGYF 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           PLTL+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED
Sbjct: 61  PLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484112|ref|XP_004156788.1| PREDICTED: SUMO-conjugating enzyme SCE1-like [Cucumis sativus]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/100 (89%), Positives = 94/100 (94%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERK+WRKNHPHGFVAKPET  DG+VNLMIW CIIPGK GTDWEGG+FPLT
Sbjct: 3   GGIARGRLAEERKSWRKNHPHGFVAKPETMPDGTVNLMIWHCIIPGKVGTDWEGGFFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           L FSEDYPSKPPKC+FPQGFFHPNVYPSGTVCLSILNED+
Sbjct: 63  LNFSEDYPSKPPKCRFPQGFFHPNVYPSGTVCLSILNEDS 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790674|emb|CAN61018.1| hypothetical protein VITISV_001138 [Vitis vinifera]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 94/100 (94%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETGPDGSVNLMVWHCTIPGKAGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDS 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071238|gb|ACJ83979.1| unknown [Medicago truncatula] gi|388522891|gb|AFK49507.1| unknown [Medicago truncatula]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/99 (91%), Positives = 94/99 (94%), Gaps = 1/99 (1%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           GIARGRLTEERK+WRKNHPHGFVAKPET  DGSVNLMIW C IPGK GTDWEGGYFPLTL
Sbjct: 3   GIARGRLTEERKSWRKNHPHGFVAKPETAADGSVNLMIWHCTIPGKAGTDWEGGYFPLTL 62

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           +FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+
Sbjct: 63  HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDS 101

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115450403|ref|NP_001048802.1| Os03g0123100 [Oryza sativa Japonica Group] gi|25446690|gb|AAN74837.1| Putative ubiquitin-conjugating enzyme [Oryza sativa Japonica Group] gi|108705922|gb|ABF93717.1| Ubiquitin-conjugating enzyme E2 I, putative, expressed [Oryza sativa Japonica Group] gi|113547273|dbj|BAF10716.1| Os03g0123100 [Oryza sativa Japonica Group] gi|125542190|gb|EAY88329.1| hypothetical protein OsI_09788 [Oryza sativa Indica Group] gi|125584745|gb|EAZ25409.1| hypothetical protein OsJ_09225 [Oryza sativa Japonica Group] gi|215692765|dbj|BAG88233.1| unnamed protein product [Oryza sativa Japonica Group] gi|215734816|dbj|BAG95538.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 94/100 (94%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DG+VNLMIW C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETLADGTVNLMIWHCTIPGKQGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDS 102

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242042439|ref|XP_002468614.1| hypothetical protein SORBIDRAFT_01g049010 [Sorghum bicolor] gi|241922468|gb|EER95612.1| hypothetical protein SORBIDRAFT_01g049010 [Sorghum bicolor]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 94/100 (94%), Gaps = 1/100 (1%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DG+VNLMIW C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETLPDGTVNLMIWHCTIPGKQGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDS 102

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2095838	160	SCE1 "sumo conjugation enzyme	0.723	0.606	0.877	4.7e-48
DICTYBASE|DDB_G0287693	159	ubc9 "SUMO-conjugating enzyme	0.723	0.610	0.693	1.9e-37
UNIPROTKB|F1P5D0	162	UBE2I "SUMO-conjugating enzyme	0.723	0.598	0.693	6.5e-35
UNIPROTKB|P63283	158	UBE2I "SUMO-conjugating enzyme	0.723	0.613	0.693	6.5e-35
UNIPROTKB|A6H744	158	UBE2I "Uncharacterized protein	0.723	0.613	0.693	6.5e-35
UNIPROTKB|J9NWL1	141	UBE2I "Uncharacterized protein	0.723	0.687	0.693	6.5e-35
UNIPROTKB|B0QYN7	184	UBE2I "SUMO-conjugating enzyme	0.723	0.527	0.693	6.5e-35
UNIPROTKB|H3BQQ9	137	UBE2I "SUMO-conjugating enzyme	0.723	0.708	0.693	6.5e-35
UNIPROTKB|P63279	158	UBE2I "SUMO-conjugating enzyme	0.723	0.613	0.693	6.5e-35
UNIPROTKB|I3LSZ1	158	UBE2I "Uncharacterized protein	0.723	0.613	0.693	6.5e-35

TAIR|locus:2095838 SCE1 "sumo conjugation enzyme 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 86/98 (87%), Positives = 93/98 (94%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIARGRL EERK+WRKNHPHGFVAKPET +DG+VNLM+W C IPGK GTDWEGG+FPLT+
Sbjct:     4 GIARGRLAEERKSWRKNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPLTM 63

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
             +FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED
Sbjct:    64 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0019789 "SUMO ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016925 "protein sumoylation" evidence=IDA

DICTYBASE|DDB_G0287693 ubc9 "SUMO-conjugating enzyme UBC9" [Dictyostelium discoideum (taxid:44689)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 68/98 (69%), Positives = 83/98 (84%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GI+  RL+EERK WR++HP+GF A+P T  DGS+NL +W C IPGKT T+WEGG +PL +
Sbjct:     3 GISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
              F+EDYPSKPPKC+FP+ FFHPNVYPSGTVCLSILNE+
Sbjct:    63 EFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEE 100

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

UNIPROTKB|F1P5D0 UBE2I "SUMO-conjugating enzyme UBC9" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 68/98 (69%), Positives = 75/98 (76%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     7 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 66

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED
Sbjct:    67 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 104

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

UNIPROTKB|P63283 UBE2I "SUMO-conjugating enzyme UBC9" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 68/98 (69%), Positives = 75/98 (76%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 100

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A6H744 UBE2I "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 68/98 (69%), Positives = 75/98 (76%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 100

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|J9NWL1 UBE2I "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 68/98 (69%), Positives = 75/98 (76%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 100

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|B0QYN7 UBE2I "SUMO-conjugating enzyme UBC9" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 68/98 (69%), Positives = 75/98 (76%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 100

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|H3BQQ9 UBE2I "SUMO-conjugating enzyme UBC9" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 68/98 (69%), Positives = 75/98 (76%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 100

GO:0001650 "fibrillar center" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|P63279 UBE2I "SUMO-conjugating enzyme UBC9" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 68/98 (69%), Positives = 75/98 (76%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 100

GO:0005524 "ATP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001650 "fibrillar center" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0016605 "PML body" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071535 "RING-like zinc finger domain binding" evidence=IPI

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0000795 "synaptonemal complex" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0019789 "SUMO ligase activity" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|I3LSZ1 UBE2I "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 68/98 (69%), Positives = 75/98 (76%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 100

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DDJ0	UBC9B_DANRE	6, ., 3, ., 2, ., -	0.68	0.7388	0.6305	yes	no
P63280	UBC9_MOUSE	6, ., 3, ., 2, ., -	0.68	0.7388	0.6265	yes	no
Q42551	SCE1_ARATH	6, ., 3, ., 2, ., -	0.86	0.7388	0.6187	yes	no
P40984	UBC9_SCHPO	6, ., 3, ., 2, ., -	0.58	0.7388	0.6305	yes	no
P63279	UBC9_HUMAN	6, ., 3, ., 2, ., -	0.68	0.7388	0.6265	yes	no
P63283	UBC9_CHICK	6, ., 3, ., 2, ., -	0.68	0.7388	0.6265	yes	no
P63281	UBC9_RAT	6, ., 3, ., 2, ., -	0.68	0.7388	0.6265	yes	no
Q9W6H5	UBC9A_DANRE	6, ., 3, ., 2, ., -	0.68	0.7388	0.6265	yes	no
Q28CQ4	UBC9_XENTR	6, ., 3, ., 2, ., -	0.68	0.7388	0.6265	yes	no
Q9NGP4	UBC9_DICDI	6, ., 3, ., 2, ., -	0.6868	0.7313	0.6163	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI3G32080.1 annotation not avaliable (161 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-39
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	1e-38
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	3e-38
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	2e-33
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	8e-14
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	3e-12

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  129 bits (326), Expect = 1e-39
 Identities = 46/97 (47%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E K   K+ P G  A P       NL  WE  I G  GT +EGG F L + F EDY
Sbjct: 1   RLQKELKELLKDPPPGISAFPV----DDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDY 56

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSS 106
           P KPPK KF    +HPNV PSG +CL IL ++N S +
Sbjct: 57  PFKPPKVKFTTKIYHPNVDPSGEICLDILKDENWSPA 93

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  127 bits (320), Expect = 1e-38
 Identities = 45/93 (48%), Positives = 55/93 (59%), Gaps = 3/93 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E K  RK+ P GF A P   +   NL+ W   I G  GT +EGG F LT+ F EDY
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDE---NLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDY 57

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           P KPPK KF    +HPNV  SG +CL IL ++ 
Sbjct: 58  PFKPPKVKFITKIYHPNVDSSGEICLDILKQEK 90

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  126 bits (318), Expect = 3e-38
 Identities = 48/95 (50%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL +E K  +K+ P G  A P   D   NL  WE  I G   T +EGG F LTL F 
Sbjct: 6   ALKRLLKELKKLQKDPPPGISAGPVDDD---NLFHWEATITGPPDTPYEGGIFKLTLEFP 62

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           EDYP KPPK +F    FHPNV PSG VCL IL + 
Sbjct: 63  EDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDR 97

Length = 153

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  113 bits (285), Expect = 2e-33
 Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E K  +K+ P G  A+P  +    NL+ W   I G   T +EGG F L + F EDY
Sbjct: 3   RLQKELKDLKKDPPSGISAEPVEE----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDY 58

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSS 106
           P KPPK +F    +HPNV  +G +CLSIL     S +
Sbjct: 59  PFKPPKVRFVTKIYHPNVDENGKICLSILKTHGWSPA 95

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 63.7 bits (155), Expect = 8e-14
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    + P G  A+P+      N   ++ ++ G  GT +EGGY+ L L+  E Y
Sbjct: 6   RIEKETQNLANDPPPGIKAEPDPG----NYRHFKILMEGPDGTPYEGGYYKLELFLPEQY 61

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           P +PPK +F    +HPN+   G +CL IL +
Sbjct: 62  PMEPPKVRFLTKIYHPNIDKLGRICLDILKD 92

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 59.4 bits (143), Expect = 3e-12
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E K   K+ P    A P  +    NL  W   I G + + + GG F L++ F
Sbjct: 1   MATKRIQKEHKDLLKDPPSNCSAGPSDE----NLFRWTASIIGPSDSPYAGGVFFLSILF 56

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
             DYP KPPK +F    +HPN+  +G++CL IL +
Sbjct: 57  PPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRD 91

Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	100.0
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.92
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.79
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.69
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.69
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.54
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.79
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.74
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.26
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	98.0
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.73
KOG3357	167	consensus Uncharacterized conserved protein [Funct	97.37
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.17
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	95.87
smart00591	107	RWD domain in RING finger and WD repeat containing	95.32
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	94.29
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	86.3
KOG4018	215	consensus Uncharacterized conserved protein, conta	84.19

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-45  Score=258.96  Aligned_cols=114  Identities=45%  Similarity=0.703  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      ..|.+||++|+++|++++++++++.+.+++   |+++|+++|.||++|+||||+|++.|.||++||++||+|+|.|+|||
T Consensus         4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~---~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H   80 (153)
T COG5078           4 PSALKRLLKELKKLQKDPPPGISAGPVDDD---NLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH   80 (153)
T ss_pred             hhHHHHHHHHHHHHhcCCCCceEEEECCCC---cceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence            349999999999999999999999999875   99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+++|+||+++|++     +|+|++ |++||++|+++|.+|
T Consensus        81 PNV~~~G~vCLdIL~~-----~WsP~~~l~sILlsl~slL~~P  118 (153)
T COG5078          81 PNVDPSGNVCLDILKD-----RWSPVYTLETILLSLQSLLLSP  118 (153)
T ss_pred             CCcCCCCCChhHHHhC-----CCCccccHHHHHHHHHHHHcCC
Confidence            9999999999999998     899999 999999999999883

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-44  Score=247.53  Aligned_cols=114  Identities=33%  Similarity=0.626  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      |.+||.||+++|++++++||++.+.++    |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+|||||
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~d----nl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPN   77 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGD----NLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPN   77 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCC----ceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCC
Confidence            367999999999999999999998776    9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC-cch
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS-LDD  129 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~-~~d  129 (134)
                      |+..|.||+++|.+     .|+|+. |+.||++|+++|.+| |||
T Consensus        78 I~~~G~IclDILk~-----~WsPAl~i~~VllsI~sLL~~Pnpdd  117 (148)
T KOG0417|consen   78 IDSNGRICLDILKD-----QWSPALTISKVLLSICSLLSDPNPDD  117 (148)
T ss_pred             cCccccchHHhhhc-----cCChhhHHHHHHHHHHHHhcCCCCCc
Confidence            99999999999999     799999 999999999999874 444

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-43  Score=237.24  Aligned_cols=115  Identities=38%  Similarity=0.666  Sum_probs=111.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ||  ..|.+||++|+++|+++++.|++..|.++    |++.|++.|.||++|||+||+|++.|.|+++||.+||.|+|.+
T Consensus         1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~~----niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs   74 (152)
T KOG0419|consen    1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVEN----NIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS   74 (152)
T ss_pred             CC--chHHHHHHHHHHHhhcCCCCCccCCCCcc----ceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee
Confidence            88  89999999999999999999999999987    9999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           81 GFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        81 ~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ++||||||++|.+|+++|..     .|+|+| +.+||.+||++|..|
T Consensus        75 ~mFHPNvya~G~iClDiLqN-----rWsp~Ydva~ILtsiQslL~dP  116 (152)
T KOG0419|consen   75 KMFHPNVYADGSICLDILQN-----RWSPTYDVASILTSIQSLLNDP  116 (152)
T ss_pred             eccCCCcCCCCcchHHHHhc-----CCCCchhHHHHHHHHHHHhcCC
Confidence            99999999999999999998     799999 999999999998764

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=2.5e-41  Score=238.44  Aligned_cols=111  Identities=28%  Similarity=0.612  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      +.|||++|+++|++++++|+.+.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~----d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN   78 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPG----NYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN   78 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCC----CccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence            789999999999999999999988765    9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |+++|.||+++|.+     +|+|++ |++||++|+++|.+|
T Consensus        79 V~~~G~iCl~iL~~-----~W~p~~ti~~iL~~i~~ll~~P  114 (152)
T PTZ00390         79 IDKLGRICLDILKD-----KWSPALQIRTVLLSIQALLSAP  114 (152)
T ss_pred             ECCCCeEECccCcc-----cCCCCCcHHHHHHHHHHHHhCC
Confidence            99999999999987     799999 999999999999874

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=1.1e-40  Score=233.98  Aligned_cols=112  Identities=29%  Similarity=0.594  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCC
Q 032754            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (134)
Q Consensus         8 ~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   87 (134)
                      .+||++|+++|++++++++++.+.++    |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus         3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~----nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv   78 (147)
T PLN00172          3 TKRIQKEHKDLLKDPPSNCSAGPSDE----NLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI   78 (147)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEECCC----ChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence            79999999999999999999998765    99999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754           88 YPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD  128 (134)
Q Consensus        88 ~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~  128 (134)
                      +.+|.||+++|.+     +|+|++ |++||++|+++|.+|-.
T Consensus        79 ~~~G~iCl~il~~-----~W~p~~ti~~il~~i~~ll~~P~~  115 (147)
T PLN00172         79 NSNGSICLDILRD-----QWSPALTVSKVLLSISSLLTDPNP  115 (147)
T ss_pred             CCCCEEEcccCcC-----CCCCcCcHHHHHHHHHHHHhCCCC
Confidence            9999999999987     799999 99999999999887543

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-40  Score=229.74  Aligned_cols=125  Identities=30%  Similarity=0.491  Sum_probs=113.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      |++ +.+..-|+++|++|++++..|+++...++.   |+++|.|.|.||++|+|+||.|+..+.||.+||.+||+++|.|
T Consensus         1 m~~-~~a~~ll~~qlk~L~~~pv~gf~~glvd~~---dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s   76 (171)
T KOG0425|consen    1 MTS-SQASLLLLKQLKELQEEPVEGFSVGLVDDS---DIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS   76 (171)
T ss_pred             Ccc-chhHHHHHHHHHHHhcCCCCccccccccCC---ceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh
Confidence            443 457888999999999999999999998875   9999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCCcch
Q 032754           81 GFFHPNVYPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISSLDD  129 (134)
Q Consensus        81 ~i~HPnV~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~~~d  129 (134)
                      ++||||||++|+||+|||.+..        .++.|+|.+ +++||++|.++|.+|-++
T Consensus        77 ~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~  134 (171)
T KOG0425|consen   77 KMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDE  134 (171)
T ss_pred             hhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCC
Confidence            9999999999999999997542        145899999 999999999988775443

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-40  Score=221.34  Aligned_cols=125  Identities=40%  Similarity=0.683  Sum_probs=116.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      |+  ..|+|||++|+++|..++++||.+.|..+|   |.++|.++|.||++|+|+||.|..++.||.+||.+||+++|.-
T Consensus         1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~Ed---nfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc   75 (165)
T KOG0426|consen    1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINED---NFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC   75 (165)
T ss_pred             Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCcc---ceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec
Confidence            77  799999999999999999999999999886   9999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCCcchh
Q 032754           81 GFFHPNVYPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISSLDDM  130 (134)
Q Consensus        81 ~i~HPnV~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~~~d~  130 (134)
                      .+||||||++|+||+++|....        ..+.|+|.+ ++.||+++.++|..|-++.
T Consensus        76 ~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdES  134 (165)
T KOG0426|consen   76 EMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDES  134 (165)
T ss_pred             ccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCccc
Confidence            9999999999999999996432        156899999 9999999999988876653

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-38  Score=216.77  Aligned_cols=121  Identities=62%  Similarity=1.091  Sum_probs=114.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeec
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~   79 (134)
                      ||  +.++.||+.|-+.+.++.+-|+.+.|..+ ++..|++.|+|.|.|++||+||||.|++++.||++||.+||+++|.
T Consensus         1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~   78 (158)
T KOG0424|consen    1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK   78 (158)
T ss_pred             Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence            78  78999999999999999999999999874 5689999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           80 QGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        80 t~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      +++||||||++|.|||++|+++.   +|+|+. |.+||.+||.||-+|
T Consensus        79 ~pl~HPNVypsgtVcLsiL~e~~---~W~paitikqiL~gIqdLL~~P  123 (158)
T KOG0424|consen   79 PPLFHPNVYPSGTVCLSILNEEK---DWRPAITIKQILLGIQDLLDTP  123 (158)
T ss_pred             CCCcCCCcCCCCcEehhhhcccc---CCCchhhHHHHHHHHHHHhcCC
Confidence            99999999999999999999865   799999 999999999998764

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-37  Score=220.67  Aligned_cols=114  Identities=31%  Similarity=0.506  Sum_probs=107.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 032754            1 MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~   77 (134)
                      ||  . +.+||++|.+++.+++   ..||.+....+    |+.+....|.||+|||||||.|.+.|++|++|||+||+|+
T Consensus         1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~----~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~   73 (200)
T KOG0418|consen    1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVNE----NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK   73 (200)
T ss_pred             Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEccC----ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence            77  5 8999999999999998   78999988886    9999999999999999999999999999999999999999


Q ss_pred             ecCCCccCCC-CCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           78 FPQGFFHPNV-YPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        78 f~t~i~HPnV-~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |.|+|||||| +.+|.||+++|.+     .|.+++ ++++|++||++|.++
T Consensus        74 F~TkIwHPnVSs~tGaICLDilkd-----~Wa~slTlrtvLislQalL~~p  119 (200)
T KOG0418|consen   74 FITKIWHPNVSSQTGAICLDILKD-----QWAASLTLRTVLISLQALLCAP  119 (200)
T ss_pred             eeeeeecCCCCcccccchhhhhhc-----ccchhhhHHHHHHHHHHHHcCC
Confidence            9999999999 5599999999999     899999 999999999998773

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-37  Score=211.11  Aligned_cols=115  Identities=33%  Similarity=0.487  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      ....|||++||..|+....+||++.|.++    |++.|..+|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.||
T Consensus        28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~d----nlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H  103 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMSNTPGISAFPESD----NLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH  103 (175)
T ss_pred             chHHHHHHHHHHHHHhcCCCCcccCcCcC----ceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence            56789999999999999999999999887    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD  128 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~  128 (134)
                      |||+..|.||++||.+     .|+..| +++||++||++|-.|-+
T Consensus       104 PNVD~~GnIcLDILkd-----KWSa~YdVrTILLSiQSLLGEPNn  143 (175)
T KOG0421|consen  104 PNVDLSGNICLDILKD-----KWSAVYDVRTILLSIQSLLGEPNN  143 (175)
T ss_pred             CCccccccchHHHHHH-----HHHHHHhHHHHHHHHHHHhCCCCC
Confidence            9999999999999998     899999 99999999999876544

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=4.9e-37  Score=213.69  Aligned_cols=110  Identities=37%  Similarity=0.656  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCCC
Q 032754           10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP   89 (134)
Q Consensus        10 Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   89 (134)
                      ||++|+++++++++.|+.+.+.+++   |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~---~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~   77 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDD---NLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDE   77 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTT---ETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-T
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCC---ChheEEEEEeccCccceecccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999998853   9999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           90 SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        90 ~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      +|+||+++|..+    .|+|++ +.+||.+|+++|..+
T Consensus        78 ~G~icl~~l~~~----~W~p~~~i~~il~~i~~ll~~p  111 (140)
T PF00179_consen   78 NGRICLDILNPE----SWSPSYTIESILLSIQSLLSEP  111 (140)
T ss_dssp             TSBBGHGGGTTT----TC-TTSHHHHHHHHHHHHHHST
T ss_pred             cccchhhhhhcc----cCCcccccccHHHHHHHHHhCC
Confidence            999999999964    599999 999999999998765

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=7.2e-36  Score=208.11  Aligned_cols=111  Identities=36%  Similarity=0.624  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   88 (134)
                      |||++|+++|+++++.|+.+.+.++    |+.+|+++|.||++|+|+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~----~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~   77 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEE----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD   77 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCC----ChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence            7999999999999999999998876    999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           89 PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        89 ~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      .+|.||+++|..+    +|+|++ +++||.+|+++|.++.
T Consensus        78 ~~G~icl~~l~~~----~W~p~~~l~~il~~i~~~l~~p~  113 (141)
T cd00195          78 ENGKICLSILKTH----GWSPAYTLRTVLLSLQSLLNEPN  113 (141)
T ss_pred             CCCCCchhhcCCC----CcCCcCcHHHHHHHHHHHHhCCC
Confidence            9999999999873    499999 9999999999998643

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=1.3e-34  Score=202.69  Aligned_cols=113  Identities=38%  Similarity=0.618  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   88 (134)
                      +||++|+++++++++.|+.+.+.+++   |+.+|+++|.||++|+|+||.|++.|.||++||++||+|+|.+++|||||+
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~---~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~   77 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDED---NLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD   77 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCC---ChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence            59999999999999999999887653   999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754           89 PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD  128 (134)
Q Consensus        89 ~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~  128 (134)
                      ++|.||+++|..+    +|+|++ +++||.+|+++|.++..
T Consensus        78 ~~G~icl~~l~~~----~W~p~~~l~~il~~i~~~l~~p~~  114 (145)
T smart00212       78 SSGEICLDILKQE----KWSPATTLETVLLSIQSLLSEPNP  114 (145)
T ss_pred             CCCCEehhhcCCC----CCCCCCcHHHHHHHHHHHHhCCCC
Confidence            9999999999832    799999 99999999999877543

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.3e-33  Score=185.96  Aligned_cols=114  Identities=30%  Similarity=0.533  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCC-c
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-F   83 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~   83 (134)
                      ..|.+||+|||.+|+.++|.|+.....+     |+.+|.+-+.|.+||.|+|.+|.+.++||+.||+..|.|.|..++ .
T Consensus        14 ~~at~RLqKEl~e~q~~pP~G~~~~v~d-----nlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~   88 (161)
T KOG0427|consen   14 KIATNRLQKELSEWQNNPPTGFKHRVTD-----NLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL   88 (161)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcceeeccc-----chheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence            5688999999999999999999987543     999999999999999999999999999999999999999999876 7


Q ss_pred             cCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754           84 HPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD  128 (134)
Q Consensus        84 HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~  128 (134)
                      ||+||.+|.||+++|.+     +|+|++ +.+|.++|.++|.+..+
T Consensus        89 HPHiYSNGHICL~iL~d-----~WsPAmsv~SvClSIlSMLSSs~e  129 (161)
T KOG0427|consen   89 HPHIYSNGHICLDILYD-----SWSPAMSVQSVCLSILSMLSSSKE  129 (161)
T ss_pred             CCceecCCeEEEEeecc-----cCCcchhhHHHHHHHHHHHccCcc
Confidence            99999999999999998     799999 99999999999988554

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.1e-33  Score=188.10  Aligned_cols=111  Identities=29%  Similarity=0.451  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      +.+||+||+.+|++++...+.-...++   .|+..|.+.+. |++.||..|.|+++|.||.+|||+||+|.|.|+|||||
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e---~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN   78 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDE---ANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN   78 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhccc---ccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence            789999999999999887655433443   39999999999 89999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCC
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKIS  125 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~  125 (134)
                      |++.|.+|+.++..+    +|+|++ .++||+++.+++-.
T Consensus        79 VDe~gqvClPiis~E----nWkP~T~teqVlqaLi~liN~  114 (153)
T KOG0422|consen   79 VDEKGQVCLPIISAE----NWKPATRTEQVLQALIALIND  114 (153)
T ss_pred             CCCCCceeeeeeecc----cccCcccHHHHHHHHHHHhcC
Confidence            999999999999886    799999 99999999865443

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.7e-30  Score=187.91  Aligned_cols=115  Identities=28%  Similarity=0.413  Sum_probs=103.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      |+. ..|.|||+||++.|.+++.++|.+.+..+    |+.+||..+.||++|||+||.|+.+|.||.+||++||.|++.|
T Consensus         1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p~----nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT   75 (244)
T KOG0894|consen    1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNPN----NILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT   75 (244)
T ss_pred             Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCcc----ceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence            563 78899999999999999999999999987    9999999999999999999999999999999999999999999


Q ss_pred             C--CccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           81 G--FFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        81 ~--i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      +  .|-+    +-++|||+.+.+  .+.|+|+| +.+||.++.+.|.++
T Consensus        76 PNGRFkt----ntRLCLSiSDfH--PdsWNP~WsVStILtGLlSFM~e~  118 (244)
T KOG0894|consen   76 PNGRFKT----NTRLCLSISDFH--PDSWNPGWSVSTILTGLLSFMTED  118 (244)
T ss_pred             CCCceec----CceEEEeccccC--cCcCCCcccHHHHHHHHHHHHhcC
Confidence            3  2333    368999998763  46899999 999999999988764

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-30  Score=183.04  Aligned_cols=111  Identities=30%  Similarity=0.465  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecC-CCCCCCcc--eEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCC
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLM--IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG   81 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~-~~~~~~~~--~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~   81 (134)
                      +.+.-||++|+.++  +.+++++..... .+   +++  +++++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|+
T Consensus        27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~---d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk  100 (184)
T KOG0420|consen   27 SAALLRLKKDILEL--NLPPTCSLSFPDSPD---DLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK  100 (184)
T ss_pred             cHHHHHHHhhhhhc--cCCCccccccccCCc---ccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence            45677788877777  566677653332 32   333  5999999 999999999999999999999999999999999


Q ss_pred             CccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           82 FFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        82 i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ||||||+.+|.|||+||++     +|+|+. |.+|+.++++++..+
T Consensus       101 V~HPNId~~GnVCLnILRe-----dW~P~lnL~sIi~GL~~LF~ep  141 (184)
T KOG0420|consen  101 VYHPNIDLDGNVCLNILRE-----DWRPVLNLNSIIYGLQFLFLEP  141 (184)
T ss_pred             cccCCcCCcchHHHHHHHh-----cCccccchHHHHHHHHHHhccC
Confidence            9999999999999999999     799999 999999999987663

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.1e-30  Score=179.02  Aligned_cols=112  Identities=21%  Similarity=0.409  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   85 (134)
                      ...|||..|+.+|....   ..+...++    ++.+++|.+.||.+|+|+||+|++++.+|++||++.|.|.|.++||||
T Consensus         3 ~~~rRid~Dv~KL~~s~---yeV~~ind----~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHP   75 (189)
T KOG0416|consen    3 SGKRRIDTDVMKLLMSD---YEVTIIND----GMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHP   75 (189)
T ss_pred             CcccchhhHHHHHHhcC---CeEEEecC----cccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCC
Confidence            46799999999998754   45666664    799999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CCceeeccCCCCCCCCCCChHH-HHHHHHHH--HHhhCCCcch
Q 032754           86 NVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGS--GLAKISSLDD  129 (134)
Q Consensus        86 nV~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i--~~~l~~~~~d  129 (134)
                      ||+. +|.|||+++++     .|+|.+ +..|+..+  |.|...+|.|
T Consensus        76 NIDe~SGsVCLDViNQ-----tWSp~yDL~NIfetfLPQLL~YPNp~D  118 (189)
T KOG0416|consen   76 NIDEASGSVCLDVINQ-----TWSPLYDLVNIFETFLPQLLRYPNPSD  118 (189)
T ss_pred             CchhccCccHHHHHhh-----hhhHHHHHHHHHHHHhHHHhcCCCCCC
Confidence            9955 99999999999     899999 99998777  4555555554

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-29  Score=178.39  Aligned_cols=112  Identities=25%  Similarity=0.447  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   85 (134)
                      ..+|.+.+|++.|...+|.||.|.+.++    |+....+.|.||.||||++|.|+..+.+..+||.+||+-.|+|+||||
T Consensus        10 ~vik~~~kEl~~l~~~PPdGIKV~~Nee----D~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHP   85 (223)
T KOG0423|consen   10 NVIKQLAKELKSLDESPPDGIKVVVNEE----DFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHP   85 (223)
T ss_pred             HHHHHHHHHHHhcccCCCCceEEecChH----HhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccC
Confidence            3678899999999999999999999887    899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           86 NVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        86 nV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ||-.+|.||.+.|..     +|+|.. |+.||+.|.++|+.|
T Consensus        86 NVaaNGEICVNtLKk-----DW~p~LGirHvLltikCLLI~P  122 (223)
T KOG0423|consen   86 NVAANGEICVNTLKK-----DWNPSLGIRHVLLTIKCLLIEP  122 (223)
T ss_pred             CcccCceehhhhhhc-----ccCcccchhhHhhhhheeeecC
Confidence            999999999999999     799999 999999999988764

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=5.9e-25  Score=162.10  Aligned_cols=113  Identities=25%  Similarity=0.365  Sum_probs=99.7

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754            4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (134)
Q Consensus         4 ~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (134)
                      .+.+.|||++|.++|+ ++.....+.+.++    |+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|   
T Consensus         9 KnpaVkRlmkEa~El~-~Ptd~yha~plEd----NlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT---   80 (314)
T KOG0428|consen    9 KNPAVKRLMKEAAELK-DPTDHYHAQPLED----NLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT---   80 (314)
T ss_pred             cCHHHHHHHHHHHHhc-Cchhhhhhccchh----ceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc---
Confidence            3679999999999998 8888888889887    9999999999999999999999999999999999999999998   


Q ss_pred             cCCC-CC-CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           84 HPNV-YP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        84 HPnV-~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                       ||- .+ +-+||++|.+-  +.+.|.|+| |++.|++|..+|-+.|
T Consensus        81 -pNGRFE~nkKiCLSISgy--HPEtWqPSWSiRTALlAlIgFmPt~p  124 (314)
T KOG0428|consen   81 -PNGRFEVNKKICLSISGY--HPETWQPSWSIRTALLALIGFMPTKP  124 (314)
T ss_pred             -CCCceeeCceEEEEecCC--CccccCcchhHHHHHHHHHccccCCC
Confidence             665 33 45799999875  356899999 9999999998765544

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.4e-19  Score=154.52  Aligned_cols=113  Identities=26%  Similarity=0.485  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCC--CccCC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHPN   86 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn   86 (134)
                      +..+.|.+-|..+.+.+|.|...++    .+.-..+.|.||.+|||.+|.|.|.|.||++||.+||.+...+.  .++||
T Consensus       854 ~~~~~~~~~~~~~~~~~~~vr~~e~----r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn  929 (1101)
T KOG0895|consen  854 KKVQTEWKILPLSLPSGIFVRAYED----RMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN  929 (1101)
T ss_pred             HHHHHHHHhhhccCCCceEEEechH----HHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence            4455567777778999999999886    66667899999999999999999999999999999999999974  58999


Q ss_pred             CCCCCceeeccCCCCCC--CCCCChHH-HHHHHHHHHHhhCC
Q 032754           87 VYPSGTVCLSILNEDNV--SSSCRFVI-YFQIMYGSGLAKIS  125 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~--~~~W~p~~-i~~vl~~i~~~l~~  125 (134)
                      .|++|+||+++|+.|.+  .+.|+|+- +.+||.+||.|.++
T Consensus       930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~  971 (1101)
T KOG0895|consen  930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN  971 (1101)
T ss_pred             cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence            99999999999999963  67899988 99999999998665

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1e-16  Score=137.20  Aligned_cols=118  Identities=25%  Similarity=0.466  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCC---
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG---   81 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~---   81 (134)
                      ....+|+++|++.+.++.++|+.+.+.+.    .....++.|.||.+|||++|.|.|.|.||..||..||.|+++|.   
T Consensus       281 ~~~skrv~ke~~llskdlpEgifvrp~e~----RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~  356 (1101)
T KOG0895|consen  281 KNWSKKVAKELKLLSKDLPEGIFVRPDEG----RMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGV  356 (1101)
T ss_pred             hhhHHHHHHHhhhhcccCCCCcccccccc----ccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccce
Confidence            34679999999999999999999999886    88889999999999999999999999999999999999999986   


Q ss_pred             CccCCCCCCCceeeccCCCCCC--CCCCChH-H-HHHHHHHHHHhhCCC
Q 032754           82 FFHPNVYPSGTVCLSILNEDNV--SSSCRFV-I-YFQIMYGSGLAKISS  126 (134)
Q Consensus        82 i~HPnV~~~G~vcl~~l~~~~~--~~~W~p~-~-i~~vl~~i~~~l~~~  126 (134)
                      .+.||.|.+|+||+++|..|..  -+.|+|. . +.++|.+||.++...
T Consensus       357 R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  357 RLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             eecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence            6899999999999999987753  2479999 4 999999999987765

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=2.4e-16  Score=114.97  Aligned_cols=112  Identities=21%  Similarity=0.312  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCC--CCCeeeecCCCccCC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS--KPPKCKFPQGFFHPN   86 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPn   86 (134)
                      --|+.|+..+.+++-+||+|.|.-.    |-..|-.+|.+..| .|.||+|+|+|.+|++||.  +-|+|.|.+.++||+
T Consensus        22 y~llAEf~lV~~ekL~gIyviPSya----n~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~   96 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVIPSYA----NKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPL   96 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEccccc----ccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccc
Confidence            4577888888889999999999987    88999999997665 8999999999999999994  479999999999999


Q ss_pred             CCC-CCceeeccCCCCCCCCCCChHH--HHHHHHHHHHhhCCCcchh
Q 032754           87 VYP-SGTVCLSILNEDNVSSSCRFVI--YFQIMYGSGLAKISSLDDM  130 (134)
Q Consensus        87 V~~-~G~vcl~~l~~~~~~~~W~p~~--i~~vl~~i~~~l~~~~~d~  130 (134)
                      |.+ ++.+|++-...     .|+-..  |++||..+|..+.++.++.
T Consensus        97 icp~skeLdl~raf~-----eWRk~ehhiwqvL~ylqriF~dpd~si  138 (258)
T KOG0429|consen   97 ICPKSKELDLNRAFP-----EWRKEEHHIWQVLVYLQRIFYDPDVSI  138 (258)
T ss_pred             cCCCccceeHhhhhh-----hhhccccHHHHHHHHHHHHhcCcccch
Confidence            955 88999987776     698888  9999999999888776654

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.4e-14  Score=98.31  Aligned_cols=117  Identities=21%  Similarity=0.192  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   85 (134)
                      +..-||.+|+.+-++...++...+..+++++--+..|..+|.||+.|+||+.+|.++|...++||..||+|+|.+++--+
T Consensus         5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~   84 (138)
T KOG0896|consen    5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN   84 (138)
T ss_pred             ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence            44567888988887766666666666665555667999999999999999999999999999999999999999999988


Q ss_pred             CC-CCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCC
Q 032754           86 NV-YPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKIS  125 (134)
Q Consensus        86 nV-~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~  125 (134)
                      .| ..+|.|.-..+.--+   +|+-.+ ++.||.+++..|.+
T Consensus        85 gvn~~~g~Vd~~~i~~L~---~W~~~y~~~~vl~~lr~~m~~  123 (138)
T KOG0896|consen   85 GVNSSNGVVDPRDITVLA---RWQRSYSIKMVLGQLRKEMMS  123 (138)
T ss_pred             ccccCCCccCccccchhh---cccccchhhHHHHhhhHHHHH
Confidence            88 446666543332111   699999 99999999876554

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=5.4e-09  Score=69.37  Aligned_cols=63  Identities=14%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             EEEEEEcCCCCCCCCCeeeecCCCcc-CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCC
Q 032754           59 FPLTLYFSEDYPSKPPKCKFPQGFFH-PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKIS  125 (134)
Q Consensus        59 f~~~i~fp~~YP~~pP~v~f~t~i~H-PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~  125 (134)
                      .-+.+.|+++||+.||.+|...++-. --|-.+|+||+.+|..+    +|+.++ |+.++++|...++.
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~q----gwssay~Ve~vi~qiaatlVk   77 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQ----GWSSAYEVERVIMQIAATLVK   77 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccc----cccchhhHHHHHHHHHHHhhc
Confidence            34678899999999999998875432 33366899999999986    899999 99999999987765

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.74  E-value=4.3e-08  Score=67.65  Aligned_cols=68  Identities=25%  Similarity=0.415  Sum_probs=58.7

Q ss_pred             CCCEEEEEEEcCCCCCCCCCeeeecCCC---ccCCCCCCCceee---ccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           55 EGGYFPLTLYFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~G~vcl---~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      .|+.+.++|.+|++||..||.|....+.   +-|||+.+|.+|+   +..-+     .|.|.. +..+|.+.+.+|...+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D-----~~~P~~~~~~~l~~a~~lL~~~~  108 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLD-----PWDPEGIIADCLERAIRLLEDGL  108 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccC-----ccCHHHHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999999998644   6899999999999   55555     799999 9999988887776543

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.26  E-value=2.4e-06  Score=58.14  Aligned_cols=78  Identities=18%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             CcceEEEEEcCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeeecCCC-----ccCCCCCCCceeeccCCCCCCCCCCCh-
Q 032754           38 NLMIWECIIPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQGF-----FHPNVYPSGTVCLSILNEDNVSSSCRF-  109 (134)
Q Consensus        38 ~~~~w~~~i~gp~~t~y~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~G~vcl~~l~~~~~~~~W~p-  109 (134)
                      .+.....+|.    -.|+|..|.  +.|-+|.+||.+||.+......     -+.+|+.+|+|.+..|..      |++ 
T Consensus        31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~------W~~~  100 (121)
T PF05743_consen   31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN------WNPP  100 (121)
T ss_dssp             EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--------TT
T ss_pred             eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc------CCCC
Confidence            4444444443    358888885  5566899999999999887422     245999999999999986      888 


Q ss_pred             HH-HHHHHHHHHHhhCC
Q 032754          110 VI-YFQIMYGSGLAKIS  125 (134)
Q Consensus       110 ~~-i~~vl~~i~~~l~~  125 (134)
                      .. +..++..++..+..
T Consensus       101 ~s~L~~lv~~l~~~F~~  117 (121)
T PF05743_consen  101 SSNLVDLVQELQAVFSE  117 (121)
T ss_dssp             TS-HHHHHHHHHHCCCH
T ss_pred             CCCHHHHHHHHHHHHhH
Confidence            44 88888888766554

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=98.00  E-value=4.2e-06  Score=57.87  Aligned_cols=76  Identities=29%  Similarity=0.460  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHc-------CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEcCCC
Q 032754            6 IARGRLTEERKAWRKN-------HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSED   68 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~-------~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~   68 (134)
                      .-..||..|++.|-+-       ....+.+.                 .-++||-|.|.+          |.+++++|..
T Consensus        24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le-----------------sn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~t   86 (161)
T PF08694_consen   24 LWVQRLKEEYQALIKYVENNKENDNDWFRLE-----------------SNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVT   86 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---EEEE-----------------E-TTSSEEEEEEEEEETTEEEEEEEEEE--TT
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeEEec-----------------cCCCCCccccEEEEEeeeeeEEEeeecCCCcc
Confidence            4578999999988751       12223332                 224455555543          5567778999


Q ss_pred             CCCCCCeeeecCC-CccCCCCCCCceeeccC
Q 032754           69 YPSKPPKCKFPQG-FFHPNVYPSGTVCLSIL   98 (134)
Q Consensus        69 YP~~pP~v~f~t~-i~HPnV~~~G~vcl~~l   98 (134)
                      ||..||.|....- --..-.|..|+||++.-
T Consensus        87 YP~t~pEi~lPeLdGKTaKMYRGGkIClt~H  117 (161)
T PF08694_consen   87 YPTTAPEIALPELDGKTAKMYRGGKICLTDH  117 (161)
T ss_dssp             TTTS----B-GGGTTT-SSBCCCCBB---TT
T ss_pred             CCCCCcceeccccCCchhhhhcCceEeeecc
Confidence            9999999987642 22355688999999764

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.00022  Score=55.82  Aligned_cols=90  Identities=19%  Similarity=0.266  Sum_probs=65.5

Q ss_pred             cCCCCCCCcceEEEEEcCCCCCCCCCCEEEEE--EEcCCCCCCCCCeeeecC-C----CccCCCCCCCceeeccCCCCCC
Q 032754           31 ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT--LYFSEDYPSKPPKCKFPQ-G----FFHPNVYPSGTVCLSILNEDNV  103 (134)
Q Consensus        31 ~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~--i~fp~~YP~~pP~v~f~t-~----i~HPnV~~~G~vcl~~l~~~~~  103 (134)
                      ..++...+++..    .|---.+|.|.+|.+=  |=+.+.||..||.+.... .    -.|-+|+.+|+|.|..|..   
T Consensus        44 ~~Dg~s~~ll~~----~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~---  116 (365)
T KOG2391|consen   44 HNDGRSRLLLQL----DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN---  116 (365)
T ss_pred             ecCCCccchhhc----cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc---
Confidence            333334455554    4444457888887755  557999999999987662 1    1399999999999999986   


Q ss_pred             CCCCChHH--HHHHHHHHHHhhCCCcchh
Q 032754          104 SSSCRFVI--YFQIMYGSGLAKISSLDDM  130 (134)
Q Consensus       104 ~~~W~p~~--i~~vl~~i~~~l~~~~~d~  130 (134)
                         |.+.-  +..++..+.+.+..+|-++
T Consensus       117 ---W~~pssdLv~Liq~l~a~f~~~pP~y  142 (365)
T KOG2391|consen  117 ---WDPPSSDLVGLIQELIAAFSEDPPVY  142 (365)
T ss_pred             ---CCCccchHHHHHHHHHHHhcCCCccc
Confidence               97766  8888888888877765443

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.00034  Score=47.85  Aligned_cols=83  Identities=24%  Similarity=0.397  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEcCCCCCCCCCe
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSEDYPSKPPK   75 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~   75 (134)
                      .-..||..|++.|.+.-..      ..+    +-..|.-.-..++||-|-|.+          |.+++.+|-.||..+|.
T Consensus        27 ~wvqrlkeey~sli~yvqn------nk~----~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape   96 (167)
T KOG3357|consen   27 LWVQRLKEEYQSLIAYVQN------NKS----NDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE   96 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHh------Ccc----cCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence            3568999999998752211      111    122233333557888888865          55677789999999999


Q ss_pred             eeecCCC-ccCCCCCCCceeeccC
Q 032754           76 CKFPQGF-FHPNVYPSGTVCLSIL   98 (134)
Q Consensus        76 v~f~t~i-~HPnV~~~G~vcl~~l   98 (134)
                      +....-- -.-..|..|+||+.--
T Consensus        97 ialpeldgktakmyrggkiclt~h  120 (167)
T KOG3357|consen   97 IALPELDGKTAKMYRGGKICLTDH  120 (167)
T ss_pred             ccccccCchhhhhhcCceEeeccc
Confidence            8765311 1233477899999754

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.17  E-value=0.026  Score=36.78  Aligned_cols=67  Identities=19%  Similarity=0.210  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      .+.+.|+..|..==+... .....    .+...+.+.+.+  ...+.-....+++.+.||++||..+|.|...+
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~   72 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEIES----KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLES   72 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSSTS----SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCc-ccccc----CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEc
Confidence            456778877775322222 11111    244556666632  23334446689999999999999999998765

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=95.87  E-value=0.098  Score=35.62  Aligned_cols=92  Identities=12%  Similarity=0.149  Sum_probs=57.2

Q ss_pred             CeEEeecCCCCCCCcceEEEEEcC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCCCCCc-e--eeccCC
Q 032754           25 GFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGT-V--CLSILN   99 (134)
Q Consensus        25 ~~~~~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~-v--cl~~l~   99 (134)
                      |+..+...+    .-..|.+ |.|  -+.+.|....-.+.|.+|..||..+|-+-+..+-..   ..+|. +  |-+...
T Consensus        13 g~~~E~v~e----g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~---~~~G~~iP~~~~~~~   84 (122)
T PF14462_consen   13 GLRWETVTE----GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLK---LADGGPIPNAAEVTQ   84 (122)
T ss_pred             CceEEEEEe----CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceE---ccCCCcCCchhcchh
Confidence            555555544    3445655 555  345579999999999999999999886655543221   12222 3  332221


Q ss_pred             CC---------CCCCCCChHH--HHHHHHHHHHhhC
Q 032754          100 ED---------NVSSSCRFVI--YFQIMYGSGLAKI  124 (134)
Q Consensus       100 ~~---------~~~~~W~p~~--i~~vl~~i~~~l~  124 (134)
                      .-         ++...|+|..  |.+.|..|...|.
T Consensus        85 ~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen   85 TFDGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             hcCCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence            10         1233799988  9999988876653

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=95.32  E-value=0.17  Score=32.61  Aligned_cols=25  Identities=20%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             CCEEEEEEEcCCCCCCCCCeeeecC
Q 032754           56 GGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus        56 gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      .-.+.+.+.+|.+||..+|.|.+.+
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEEC
Confidence            4568899999999999999998875

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=94.29  E-value=0.063  Score=38.29  Aligned_cols=57  Identities=18%  Similarity=0.107  Sum_probs=42.2

Q ss_pred             EEEEcCCCCCCCCCeeeecCCCc---cCCCCCC-----CceeeccCCCCCCCCCCChHH-HHHHHHHHHH
Q 032754           61 LTLYFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNVSSSCRFVI-YFQIMYGSGL  121 (134)
Q Consensus        61 ~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~~-----G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~  121 (134)
                      +.|.|+.+||..+|.|.++-+.|   +||+...     ..+|+.--.-.    .|.+.. ++.+|..|..
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~----e~~~~~g~~~~l~rl~~  122 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWS----EWRPSWGPEGFLDRLFD  122 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHH----HhhhccCHHHHHHHHHH
Confidence            56899999999999887775543   4666554     66999765543    588888 8888877764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.30  E-value=4  Score=36.00  Aligned_cols=67  Identities=12%  Similarity=0.077  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCC-CCeeeecC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSK-PPKCKFPQ   80 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~-pP~v~f~t   80 (134)
                      .-|..|+.-+-. +-+++.++-.+-    .-..--+.+.||-...-.--..++.|.||.+||.+ +|.++|..
T Consensus       423 QnLgeE~S~Ig~-k~~nV~fEkidv----a~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~  490 (1081)
T KOG0309|consen  423 QNLGEEFSLIGV-KIRNVNFEKIDV----ADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFEN  490 (1081)
T ss_pred             hhHHhHHhHhhc-cccccceEeecc----ccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEec
Confidence            446666665543 334444432221    22344566777654332223457889999999976 79999985

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=84.19  E-value=4.5  Score=30.10  Aligned_cols=38  Identities=29%  Similarity=0.516  Sum_probs=25.9

Q ss_pred             CcceEEEEEcCCCCC--CCCCCEEEEEEEcCCCCCCCCCee
Q 032754           38 NLMIWECIIPGKTGT--DWEGGYFPLTLYFSEDYPSKPPKC   76 (134)
Q Consensus        38 ~~~~w~~~i~gp~~t--~y~gg~f~~~i~fp~~YP~~pP~v   76 (134)
                      +...+.++|.-..+.  -|.| .+.+.+.++.+||..||-+
T Consensus        29 ~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli   68 (215)
T KOG4018|consen   29 DPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLI   68 (215)
T ss_pred             CCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcce
Confidence            444466666632221  1222 7889999999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		5e-36
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		6e-36
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		7e-36
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		7e-36
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		8e-36
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		9e-36
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		9e-36
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		1e-35
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		4e-35
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		7e-35
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		9e-35
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		9e-35
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		7e-34
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		7e-34
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		5e-31
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		1e-18
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		1e-16
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		4e-16
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		4e-16
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		4e-16
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		5e-16
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		5e-16
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		5e-16
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		7e-16
1jas_A	152	Hsubc2b Length = 152		1e-15
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		3e-12
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		1e-11
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		1e-11
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-11
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-11
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		3e-11
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		3e-11
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		3e-11
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		3e-11
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-11
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		5e-11
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		6e-11
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		6e-11
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		6e-11
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		6e-11
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		7e-11
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		7e-11
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		1e-10
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		1e-10
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-10
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-10
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		1e-10
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		2e-10
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		2e-10
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		2e-10
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		3e-10
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-10
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		4e-10
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		4e-10
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		5e-10
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-10
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		6e-10
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		1e-09
3jvz_A	146	E2~ubiquitin-Hect Length = 146		3e-09
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		3e-09
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		4e-09
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		6e-09
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		6e-09
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		7e-09
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		7e-09
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		1e-08
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-08
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		1e-08
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		1e-08
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		1e-08
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		2e-08
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-08
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-08
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		2e-08
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		3e-08
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		3e-08
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		2e-07
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		3e-07
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-07
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		3e-07
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		5e-07
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-06
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		2e-06
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		3e-06
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		3e-06
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		3e-06
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		3e-06
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		3e-06
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-06
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		4e-06
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		4e-06
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		1e-05
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		1e-05
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		2e-05
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		3e-05
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		4e-05
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		5e-05
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		7e-05
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		8e-05
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		8e-05
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-04
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		1e-04
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		1e-04
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		3e-04
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		4e-04
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		4e-04

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score =  145 bits (367), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F 
Sbjct: 1   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 61  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 102

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score =  145 bits (366), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           ++  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F
Sbjct: 1   LNMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 60
Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
            L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED
Sbjct: 61  KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 102

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score =  145 bits (366), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F 
Sbjct: 2   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 103

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score =  145 bits (366), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F 
Sbjct: 5   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 65  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 106

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score =  145 bits (365), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score =  145 bits (365), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 68/99 (68%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct: 6   GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
            F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 66  LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 104

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score =  145 bits (365), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 104

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 104

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score =  142 bits (359), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F +DYPS PPKCKF    FHP VYPSGTVCLSIL ED 
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDK 104

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score =  142 bits (357), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 74/98 (75%), Gaps = 1/98 (1%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct: 6   GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
            F +DYPS PPKCKF    FHPNV PSGTVCLSIL ED
Sbjct: 66  LFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEED 103

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score =  141 bits (356), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           + F +DYPS PPKCKF    FHPNVYPSGTV LSIL ED
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEED 100

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score =  141 bits (356), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           + F +DYPS PPKCKF    FHPNVYPSGTV LSIL ED
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEED 100

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score =  139 bits (349), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED 68
           RL EERK WRK+HP GF AKP  K DGS++L  WE  IPGK GT+W GG +P+T+ +  +
Sbjct: 10  RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 69
Query: 69  YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           YPSKPPK KFP GF+HPNVYPSGT+CLSILNED 
Sbjct: 70  YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQ 103

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score =  138 bits (348), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED 68
           RL EERK WRK+HP GF AKP  K DGS++L  WE  IPGK GT+W GG +P+T+ +  +
Sbjct: 8   RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 69  YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           YPSKPPK KFP GF+HPNVYPSGT+CLSILNED 
Sbjct: 68  YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQ 101

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score =  129 bits (324), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
             + + RL EERK WR++HP GF AKP ++ DG ++LM W+  IPGK  T WEGG + LT
Sbjct: 8   SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F E+YP++PPKC+F    FHPNVYPSGTVCLSILNE+ 
Sbjct: 68  MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEE 107

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 7  ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
          AR RL  + K  +++ P G    P+      N+M+W  +I G   T W+GG F L+L FS
Sbjct: 5  ARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          EDYP+KPP  +F    FHPN+Y  G++CL IL
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDIL 92

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 7  ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
          A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F   L F 
Sbjct: 5  AQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEFP 61
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
          +DYP  PPK  F     HPN+YP+G VC+SIL+
Sbjct: 62 KDYPLSPPKLTFTPSILHPNIYPNGEVCISILH 94

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 7  ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
          +R RL  + K  +++ P G    P T+D   N++ WE II G   T +E G F L+L F+
Sbjct: 5  SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
          E+YP+KPP  KF    FHPNVY  G++CL IL 
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ 93

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 1  AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 57
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
           F  DYP  PPK +F    FHPN+YP G VC+SIL+
Sbjct: 58 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 93

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 7  AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 63
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
           F  DYP  PPK +F    FHPN+YP G VC+SIL+
Sbjct: 64 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 99

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 5  AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 61
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
           F  DYP  PPK +F    FHPN+YP G VC+SIL+
Sbjct: 62 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 97

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 4  AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 60
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
           F  DYP  PPK +F    FHPN+YP G VC+SIL+
Sbjct: 61 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 96

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 7  ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
          +R RL  + K  +++ P G    P T+D   N++ WE II G   T +E G F L+L F+
Sbjct: 8  SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
          E+YP+KPP  KF    FHPNVY  G++CL IL 
Sbjct: 64 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ 96

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 7  ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
          AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F 
Sbjct: 5  ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
          E+YP+KPP  KF    FHPNVY +G +CL IL 
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ 93

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 7  ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
          AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FS
Sbjct: 5  ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          E+YP+KPP  +F    FHPNVY  G++CL IL
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNVYADGSICLDIL 92

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
          G +A  R+ +E +  +++ P    A P   D    L  W+  I G + + ++GG F LT+
Sbjct: 4  GSMALKRIQKELQDLQRDPPAQCSAGPVGDD----LFHWQATIMGPSDSPYQGGVFFLTI 59
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 60 HFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDIL 94

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
          G +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT+
Sbjct: 1  GAMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTV 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 57 HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 91

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 4   GGIARGRLTEERK--AWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           G + RG L   R+     KN   GF A     +   +L  WE +I G   T +EGG F  
Sbjct: 13  GLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKA 69
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
            L F +DYP +PPK KF    +HPNV  +G VC+SIL+E
Sbjct: 70  HLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHE 108

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT+
Sbjct: 17  GSMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTV 72
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
           +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 73  HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 107

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 42  WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           WE ++ G   T +EGG+F   L F  DYP KPPK KF    +HPN+   G VC+SIL++
Sbjct: 36  WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHD 94

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
          G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1  GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
          G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 4  GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 59
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 60 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 94

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
          G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1  GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
          G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1  GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 17  GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
           +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 73  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 107

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 3  GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
          G  +A  R+ +E +   ++ P    A P   D    L  W+  I G   + ++GG F LT
Sbjct: 1  GSHMALKRIQKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPESPYQGGVFFLT 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
          ++F  DYP KPPK  F    +HPN+  +G++CL IL 
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 93

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           GI R R+T+E +      P G +A P  +    N   +  +I G  GT +EGG + L L+
Sbjct: 1   GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
             E YP +PPK +F    +HPN+   G +CL IL +
Sbjct: 56  LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD 91

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 5  GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
          G A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++
Sbjct: 2  GSALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIH 57
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 58 FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 9  NSMALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 65 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 99

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           GI R R+T+E +      P G +A P  +    N   +  +I G  GT +EGG + L L+
Sbjct: 1   GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
             E YP +PPK +F    +HPN+   G +CL IL +
Sbjct: 56  LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD 91

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 6  IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
          +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT++F
Sbjct: 7  MALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTVHF 62
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
            DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 63 PTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 95

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+  E     K+ P    A P   D    L  W+  I G   + + GG F L+++F
Sbjct: 1   MALKRINRELADLGKDPPSSSSAGPVGDD----LFHWQATIMGPADSPYAGGVFFLSIHF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
             DYP KPPK  F    +HPN+  +G++CL IL +
Sbjct: 57  PTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRD 91

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 9  NSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 65 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 99

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 6  IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
          +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 9  MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 64
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
            DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 65 PTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 97

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
          G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1  GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL  L
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDAL 91

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
          G +A  R+ +E     ++ P    A P   D    +  W+    G   + ++GG F LT+
Sbjct: 1  GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATAMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4  GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
          G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1  GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          +F  DYP KPPK  F    +HPN+  +G++ L IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 91

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 7  ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
          A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F 
Sbjct: 1  ALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
           DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 57 TDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 88

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 6  IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
          +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 1  MALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
            DYP KPPK  F    +HPN+  +G++CL IL
Sbjct: 57 PTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 89

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     K+ P    A P   D    +  W+  I G   + + GG F L ++F 
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDD----MFHWQATIMGPEDSPYSGGVFFLNIHFP 77
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
            DYP KPPK  F    +HPN+   G +CL IL +
Sbjct: 78  SDYPFKPPKVNFTTKIYHPNINSQGAICLDILKD 111

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 3  GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT
Sbjct: 1  AGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLT 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          ++F  DYP KPPK  F    +HPN+  +G++ L IL
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 92

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 3  GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT
Sbjct: 4  SGSMALKRIQKELSDLQRDPPAHCRAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLT 59
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          ++F  DYP KPPK  F    +HPN+  +G++ L IL
Sbjct: 60 VHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDIL 95

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
          +L  WE  I G   T +EGGYF   L F  DYP  PP  +F    +HPN+Y +G VC+SI
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 98 LN 99
          L+
Sbjct: 96 LH 97

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
          +L  WE  I G   T +EGGYF   L F  DYP  PP  +F    +HPN+Y +G VC+SI
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 98 LN 99
          L+
Sbjct: 93 LH 94

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E +    +   G  A P   DG  NL  W   + G   T +E   + LTL F  DY
Sbjct: 13  RLQQELRTLLMSGDPGITAFP---DGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSS 105
           P KPP  KF    +HPNV  SG +CL IL E+  +S
Sbjct: 69  PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTAS 104

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 17  GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
           +F  DYP KPPK  F    +HPN+  +G++ L IL
Sbjct: 73  HFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDIL 107

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E     ++ P    A P   D    L  W+  I G   + + GG F L+++F  DY
Sbjct: 6   RIAKELSDLERDPPTSCSAGPVGDD----LYHWQASIMGPADSPYAGGVFFLSIHFPTDY 61
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           P KPPK  F    +HPN+  +G +CL IL +
Sbjct: 62  PFKPPKISFTTKIYHPNINANGNICLDILKD 92

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 6  IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
          +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 1  MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
            DYP KPPK  F    +HPN+  +G++ L IL
Sbjct: 57 PTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 89

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 7  ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
          A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F 
Sbjct: 1  ASKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
           DYP KPPK  F    +HPN+  +G++ L IL
Sbjct: 57 TDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 88

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G  +  R+ +E      + P    A P+      N+  W   I G  G+ +EGG F L +
Sbjct: 1   GSTSAKRIQKELAEITLDPPPNCSAGPKGD----NIYEWRSTILGPPGSVYEGGVFFLDI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
            FS DYP KPPK  F    +H N+   G +CL IL ++
Sbjct: 57  TFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN 94

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 19  RKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKF 78
           ++N+  G  AKP ++D    +M WE  I G   + W+G  F LT++F+ +Y   PP  KF
Sbjct: 36  KENNYKGITAKPVSED----MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKF 91
Query: 79  PQGFFHPNVYP-SGTVCLSILN 99
               FHPNV P +G  C+  L+
Sbjct: 92  ITIPFHPNVDPHTGQPCIDFLD 113

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
              +A  R+ +E +  +++ P    A P   D    +  W   I G   + ++GG F L 
Sbjct: 1   SAAMAMRRIQKELREIQQDPPCNCSAGPVGDD----IFHWTATITGPDDSPYQGGLFFLD 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           ++F  DYP K P+  F    +HPN+  +G +CL IL +
Sbjct: 57  VHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKD 94

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 42  WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
           W   I G  GT +EGG+F L +    DYP  PPK KF    +HPN+   +G +CL IL  
Sbjct: 77  WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKH 136
Query: 101 D 101
           +
Sbjct: 137 E 137

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           S  G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L
Sbjct: 5   SMAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKL 59
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
            L+  E+YP   PK +F    +HPNV   G +CL IL +
Sbjct: 60  ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 98

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLS 96
           N   W   I G  GT +EGG+F L +    DYP  PPK KF    +HPN+   +G +CL 
Sbjct: 51  NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 97  ILNED 101
           +L  +
Sbjct: 111 VLKNE 115

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L L
Sbjct: 5   AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 59
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           +  E+YP   PK +F    +HPNV   G +CL IL +
Sbjct: 60  FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 96

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 23  PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82
           P G    P  +D    L   +  I G  GT + GG F + L   +D+P+ PPK  F    
Sbjct: 30  PDGIKVFPNEED----LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85
Query: 83  FHPNVYPSGTVCLSILNED 101
           FHPNV  +G +C+++L  D
Sbjct: 86  FHPNVGANGEICVNVLKRD 104

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
             G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L 
Sbjct: 3   SAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLE 57
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           L+  E+YP   PK +F    +HPNV   G +CL IL +
Sbjct: 58  LFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 95

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L L
Sbjct: 2   AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           +  E+YP   PK +F    +HPNV   G +CL IL +
Sbjct: 57  FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 93

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 8   RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSE 67
           + RL +E  A + + P G     ++   S+    W   + G  GT +EG  F L   FS 
Sbjct: 24  QKRLQKELLALQNDPPPGMTLNEKSVQNSITQ--WIVDMEGAPGTLYEGEKFQLLFKFSS 81
Query: 68  DYPSKPPKCKFPQGFF--HPNVYPSGTVCLSILNED-----NVSSSCRFVI 111
            YP   P+  F       HP+VY +G +CLSIL ED     +V S C  +I
Sbjct: 82  RYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L L+
Sbjct: 1   GLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELF 55
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
             E+YP   PK +F    +HPNV   G +CL IL +
Sbjct: 56  LPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 91

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           N+  W   I G  G+ +EGG F L + F+ +YP KPPK  F    +H N+   G +CL I
Sbjct: 76  NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 98  LNED 101
           L ++
Sbjct: 136 LKDN 139

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 6  IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
          +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 1  MALKRIHKELNDLARDPPAQCRAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
            DYP KPPK  F    +HP +  +G++ L IL
Sbjct: 57 PTDYPFKPPKVAFTTRIYHPAINSNGSISLDIL 89

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
          R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 9  RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 64
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          P + PK +F    +HPN+   G +CL +L
Sbjct: 65 PMEAPKVRFLTKIYHPNIDRLGRICLDVL 93

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 4   GGIARG----RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           GG ARG    RL +E      +   G  A PE    S NL  W   I G  GT +E   +
Sbjct: 24  GGAARGPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLRY 79
Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
            L+L F   YP   P  KF    +HPNV   G + L IL E
Sbjct: 80  KLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKE 120

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
          R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7  RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          P + PK +F    +HPN+   G +CL +L
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRICLDVL 91

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWE-CIIPGKTGTDWEGGYFPL 61
           G   A  RL +E +  RK     F      +    NL+ W+  I+P      ++ G F +
Sbjct: 1   GSMAASRRLMKELEEIRKCGMKNFR---NIQVDEANLLTWQGLIVPD--NPPYDKGAFRI 55
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
            + F  +YP KPPK  F    +HPN+   G VCL +++ +N
Sbjct: 56  EINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN 96

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 39  LMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTV 93
           L I + +I G   T +  G F   +YF +DYPS PP             F+PN+Y  G V
Sbjct: 109 LDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKV 168
Query: 94  CLSILN 99
           CLSILN
Sbjct: 169 CLSILN 174

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
          R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7  RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          P + PK +F    +HPN+   G + L +L
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRISLDVL 91

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 35  GSVNLMIWE-CIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTV 93
              NL+ W+  I+P      ++ G F + + F  +YP KPPK  F    +HPN+   G V
Sbjct: 28  DEANLLTWQGLIVPD--NPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 85
Query: 94  CLSILNEDN 102
           CL +++ +N
Sbjct: 86  CLPVISAEN 94

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +  +K  P  ++    + D   N+++W  ++       +    F L 
Sbjct: 1   GSHMASMRVVKELEDLQKKPP-PYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLR 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN---VSSSCRFVIYFQIMYG 118
           + F  +YP KPP  KF    +HPNV  +G +CL I++ +N    + +C+ +    ++  
Sbjct: 57  ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVN 115

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
          R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7  RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          P + PK +F    +HP +   G + L +L
Sbjct: 63 PMEAPKVRFLTKIYHPAIDRLGRISLDVL 91

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 48 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSIL 98
          G  GT +EGG F + +    +YP KPPK +F    +HPN+   +G +CL IL
Sbjct: 41 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL 92

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +
Sbjct: 60  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 115

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +
Sbjct: 96  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 151

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E +  +K  P  ++    + D   N+++W  ++       +    F L + F
Sbjct: 1   MASMRVVKELEDLQK-KPPPYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLRISF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN---VSSSCRFVIYFQIMYG 118
             +YP KPP  KF    +HPNV  +G +CL I++ +N    + +C+ +    ++  
Sbjct: 57  PPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVN 112

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +
Sbjct: 44  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 99

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +
Sbjct: 45  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 100

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +
Sbjct: 47  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 102

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 48 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILN 99
          G  GT +EGG F + +    +YP KPPK +F    +HPN+   +G +CL IL 
Sbjct: 40 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK 92

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
          I G   T +E G F L +   E YP +PP+ +F    +HPN+  +G +CL +L
Sbjct: 40 ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVL 92

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 25  GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84
             +  P++ D S +  +   + P +   ++  G     L F+E YP +PPK    +  FH
Sbjct: 50  NVITSPDSADRSQSPKLEVIVRPDEGYYNY--GSINFNLDFNEVYPIEPPKVVCLKKIFH 107
Query: 85  PNVYPSGTVCLSILNED 101
           PN+   G VCL+IL ED
Sbjct: 108 PNIDLKGNVCLNILRED 124

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 48  GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
           G  GT +EGG + + +   + YP K P   F    FHPN+   SGTVCL ++N+
Sbjct: 59  GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ 112

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 42  WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
           ++ +  G  GT +EGG + + +   +DYP   P   F     HPNV   SG+VCL ++N+
Sbjct: 31  FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNVY-PSGTVCL 95
           +L  WE II G + T +E   F + +     YP  PPK  F Q    H NV   +G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 96  SIL 98
           +IL
Sbjct: 106 NIL 108

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLS 96
           N+ IW     G   T +    + L + F +DYP KPP   F Q    H +VY +G +CLS
Sbjct: 34  NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLS 93
Query: 97  ILNED 101
           +L +D
Sbjct: 94  LLGDD 98

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           ++ G F  +    + YP  PPK K     +HPN+   G VCL+IL ED
Sbjct: 48  YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILRED 95

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E   + KN P              N+ IW     G   T +    + + + 
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPS----NIRIWIVQYVGLENTIYANEVYKIKII 74
Query: 65  FSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLSILNED 101
           F ++YP KPP   F Q    H +VY +G +CLS+L +D
Sbjct: 75  FPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD 112

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNVY-PSGTVCL 95
           +L  WE II G + T +E   F + +     YP  PPK  F Q    H NV   +G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96  SIL 98
           +IL
Sbjct: 106 NIL 108

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNVY-PSGTVCL 95
           +L  WE II G + T +E   F + +     YP  PPK  F Q    H NV   +G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96  SIL 98
           +IL
Sbjct: 106 NIL 108

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
          L E  +  + N   G     E+ D  + L  W C I G+ GT +E   + LT++  ++YP
Sbjct: 31 LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 89
Query: 71 SKPPKCKF 78
            PP  KF
Sbjct: 90 DSPPTVKF 97

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
          L E  +  + N   G     E+ D  + L  W C I G+ GT +E   + LT++  ++YP
Sbjct: 27 LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 85
Query: 71 SKPPKCKF 78
            PP  KF
Sbjct: 86 DSPPTVKF 93

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 48  GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
           G  GT +E G + L +    DYP K P   F     HPNV   SG+VCL ++N+
Sbjct: 46  GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ 99

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYF 113
           ++GG F       + Y   PPK K     +HPN+  +G +CLS+L E ++          
Sbjct: 58  YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSID--------- 108
Query: 114 QIMYGSGLAKISSLDDMM 131
               G+G A   +L D++
Sbjct: 109 ----GTGWAPTRTLKDVV 122

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYF 113
           ++GG F       + Y   PPK K     +HPN+  +G +CLS+L E ++          
Sbjct: 58  YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSID--------- 108
Query: 114 QIMYGSGLAKISSLDDMM 131
               G+G A   +L D++
Sbjct: 109 ----GTGWAPTRTLKDVV 122

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           ++ G F  +    + YP  PPK K     +HPN+   G V L+IL ED
Sbjct: 68  YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	4e-55
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	4e-53
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	4e-52
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	2e-49
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	4e-47
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	1e-46
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	1e-46
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	6e-45
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-44
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	2e-37
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	5e-37
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	2e-36
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	5e-35
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	4e-34
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	6e-32
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	4e-31
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	9e-31
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	3e-29
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-28
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	2e-27
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	2e-27
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	2e-27
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	7e-27
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	1e-26
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-26
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	2e-26
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	3e-26
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	3e-26
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	4e-26
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	4e-26
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	4e-26
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	5e-26
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	5e-26
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	1e-25
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	2e-25
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	3e-25
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	4e-25
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	6e-25
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	6e-25
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	6e-24
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	2e-23
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	4e-23
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	6e-23
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	2e-22
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	2e-22
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	3e-22
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	3e-22
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	3e-21
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	5e-20
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	2e-18
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	1e-04

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  168 bits (429), Expect = 4e-55
 Identities = 64/103 (62%), Positives = 77/103 (74%), Gaps = 3/103 (2%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MS   +   RL EERK WRK+HP GF AKP +  DGS++L  WE  IPGK GT+W GG +
Sbjct: 1   MSS--LCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVY 58

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           P+T+ +  +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED 
Sbjct: 59  PITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQ 101

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  163 bits (415), Expect = 4e-53
 Identities = 59/103 (57%), Positives = 75/103 (72%), Gaps = 3/103 (2%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
            S   + + RL EERK WR++HP GF AKP ++ DG ++LM W+  IPGK  T WEGG +
Sbjct: 7   HSS--LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLY 64

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
            LT+ F E+YP++PPKC+F    FHPNVYPSGTVCLSILNE+ 
Sbjct: 65  KLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEE 107

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  161 bits (409), Expect = 4e-52
 Identities = 70/103 (67%), Positives = 77/103 (74%), Gaps = 3/103 (2%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSG  IA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F
Sbjct: 4   MSG--IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 61

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
            L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED 
Sbjct: 62  KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 104

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  154 bits (391), Expect = 2e-49
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS    A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F 
Sbjct: 1   MSK--TAQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFN 55

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
             L F +DYP  PPK  F     HPN+YP+G VC+SIL+   
Sbjct: 56  AKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPG 97

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  148 bits (376), Expect = 4e-47
 Identities = 43/98 (43%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L 
Sbjct: 2   GTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAILS 58

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           F  DYP  PPK +F    FHPN+YP G VC+SIL+   
Sbjct: 59  FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 96

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  147 bits (374), Expect = 1e-46
 Identities = 42/101 (41%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS    AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F 
Sbjct: 1   MST--PARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFR 54

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           L L F E+YP+KPP  KF    FHPNVY +G +CL IL   
Sbjct: 55  LLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNR 95

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  147 bits (372), Expect = 1e-46
 Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 6/101 (5%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS    AR RL  + K  +++ P G    P+      N+M+W  +I G   T W+GG F 
Sbjct: 1   MST--PARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFK 54

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           L+L FSEDYP+KPP  +F    FHPN+Y  G++CL IL   
Sbjct: 55  LSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ 95

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  142 bits (361), Expect = 6e-45
 Identities = 25/95 (26%), Positives = 40/95 (42%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL +E +  +K +    V+        + L  W C I G+ GT +E   + LT++  
Sbjct: 22  RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 81

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           ++YP  PP  KF        V   G V  + L+  
Sbjct: 82  DNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHIL 116

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  142 bits (360), Expect = 1e-44
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           M G   A   L  +    ++N+  G  AKP     S ++M WE  I G   + W+G  F 
Sbjct: 20  MHG--RAYLLLHRDFCDLKENNYKGITAKPV----SEDMMEWEVEIEGLQNSVWQGLVFQ 73

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNED 101
           LT++F+ +Y   PP  KF    FHPNV P +G  C+  L+  
Sbjct: 74  LTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNP 115

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  123 bits (310), Expect = 2e-37
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
            + RL +E  A + + P G     ++     ++  W   + G  GT +EG  F L   FS
Sbjct: 23  MQKRLQKELLALQNDPPPGMTLNEKSVQN--SITQWIVDMEGAPGTLYEGEKFQLLFKFS 80

Query: 67  EDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILNED 101
             YP   P+  F       HP+VY +G +CLSIL ED
Sbjct: 81  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED 117

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  122 bits (307), Expect = 5e-37
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E   + KN P              N+ IW     G   T +    + + + 
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPS----NIRIWIVQYVGLENTIYANEVYKIKII 74

Query: 65  FSEDYPSKPPKCKF-PQGFFHPNVYPSGTVCLSILNED 101
           F ++YP KPP   F  +   H +VY +G +CLS+L +D
Sbjct: 75  FPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD 112

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  122 bits (307), Expect = 2e-36
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           ++  L  E K  ++    GF      +    +L  WE  I G   T +EGGYF   L F 
Sbjct: 8   SQKALLLELKGLQEEPVEGFRVTLVDEG---DLYNWEVAIFGPPNTYYEGGYFKARLKFP 64

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
            DYP  PP  +F    +HPN+Y +G VC+SIL+  
Sbjct: 65  IDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPP 99

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  118 bits (297), Expect = 5e-35
 Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
               L  +     KN   GF A         +L  WE +I G   T +EGG F   L F 
Sbjct: 18  GSLLLRRQLAELNKNPVEGFSAGLI---DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFP 74

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           +DYP +PPK KF    +HPNV  +G VC+SIL+E  
Sbjct: 75  KDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPG 110

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  114 bits (287), Expect = 4e-34
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E   +  N P              N+ IW     G   T +    + L + 
Sbjct: 5   GNANYRIQKELHNFLNNPPINCTLDVHPN----NIRIWIVKYVGLENTIYANEVYKLKII 60

Query: 65  FSEDYPSKPPKCKF-PQGFFHPNVYPSGTVCLSILNED 101
           F +DYP KPP   F  +   H +VY +G +CLS+L +D
Sbjct: 61  FPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDD 98

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  109 bits (274), Expect = 6e-32
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 1/94 (1%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL EE +   K       +        + +  W   I G   ++ E   + L++    +Y
Sbjct: 10  RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69

Query: 70  PSKPPKCKFPQGFFHPNVYPS-GTVCLSILNEDN 102
           P  PPK  F      P V P+ G V        +
Sbjct: 70  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD 103

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  107 bits (270), Expect = 4e-31
 Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL EE +  +K    G V+     D  + L  W  +I G   T +E   + L +   
Sbjct: 26  RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 85

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTV----CLSIL 98
             YP  PP  +F        V  S  V     +S+L
Sbjct: 86  PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVL 121

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  106 bits (268), Expect = 9e-31
 Identities = 38/103 (36%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 1   MSGG---GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57
           M+          RL +E +    +   G  A P   DG  NL  W   + G   T +E  
Sbjct: 1   MTTSKERHSVSKRLQQELRTLLMSGDPGITAFP---DGD-NLFKWVATLDGPKDTVYESL 56

Query: 58  YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
            + LTL F  DYP KPP  KF    +HPNV  SG +CL IL E
Sbjct: 57  KYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKE 99

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  103 bits (258), Expect = 3e-29
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL EE +  +K    G V+     D  + L  W  +I G   T +E   + L +   
Sbjct: 36  RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 95

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTV----CLSILN 99
             YP  PP  +F        V  S  V     +S+L 
Sbjct: 96  PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA 132

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  100 bits (252), Expect = 3e-28
 Identities = 34/96 (35%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G    RL +E      +   G  A PE    S NL  W   I G  GT +E   + L+L 
Sbjct: 29  GPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLRYKLSLE 84

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           F   YP   P  KF    +HPNV   G + L IL E
Sbjct: 85  FPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKE 120

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 98.9 bits (247), Expect = 2e-27
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           +  G +A  R+ +E     ++ P    A P       ++  W+  I G   + ++GG F 
Sbjct: 14  VPRGSMALKRIHKELNDLARDPPAQCSAGPVGD----DMFHWQATIMGPNDSPYQGGVFF 69

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           LT++F  DYP KPPK  F    +HPN+  +G++CL IL  
Sbjct: 70  LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 109

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 98.1 bits (245), Expect = 2e-27
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +   ++ P    A P       +L  W+  I G   + ++GG F LT
Sbjct: 1   GSHMALKRIQKELQDLGRDPPAQCSAGPVGD----DLFHWQATIMGPPESPYQGGVFFLT 56

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           ++F  DYP KPPK  F    +HPN+  +G++CL IL  
Sbjct: 57  IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 94

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 98.1 bits (245), Expect = 2e-27
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            + +E      + P G    P   +   +L   +  I G  GT + GG F + L   +D+
Sbjct: 17  LVYKEVTTLTADPPDGIKVFP---NEE-DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 72

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           P+ PPK  F    FHPNV  +G +C+++L  D
Sbjct: 73  PASPPKGYFLTKIFHPNVGANGEICVNVLKRD 104

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 97.4 bits (243), Expect = 7e-27
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     K+ P    A P       ++  W+  I G   + + GG F L ++F 
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGD----DMFHWQATIMGPEDSPYSGGVFFLNIHFP 77

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
            DYP KPPK  F    +HPN+   G +CL IL +
Sbjct: 78  SDYPFKPPKVNFTTKIYHPNINSQGAICLDILKD 111

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 96.2 bits (240), Expect = 1e-26
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +  +K  P              N+++W  ++       +    F L 
Sbjct: 1   GSHMASMRVVKELEDLQKKPPPYLRNLSSDDA---NVLVWHALL-LPDQPPYHLKAFNLR 56

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
           + F  +YP KPP  KF    +HPNV  +G +CL I++ +N
Sbjct: 57  ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN 96

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 95.8 bits (239), Expect = 2e-26
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           +G      R+ +E +        G  A+P+      N   +  +I G   + +EGG F L
Sbjct: 1   AGSAGLPRRIIKETQRLLAEPVPGIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKL 56

Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
            L+  E+YP   PK +F    +HPNV   G +CL IL +
Sbjct: 57  ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 95

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  101 bits (252), Expect = 2e-26
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P       ++  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGD----DMFHWQATIMGPNDSPYQGGVFFLTI 56

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           +F  DYP KPPK  F    +HPN+  +G++ L IL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRS 93

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 95.4 bits (238), Expect = 3e-26
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL +E +  RK     F      +    NL+ W+ +I       ++ G F + + F 
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEA---NLLTWQGLI-VPDNPPYDKGAFRIEINFP 58

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
            +YP KPPK  F    +HPN+   G VCL +++ +N
Sbjct: 59  AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN 94

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 99.0 bits (246), Expect = 3e-26
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E      + P    +    +     L I + +I G   T +  G F   +YF +DY
Sbjct: 80  RLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDY 139

Query: 70  PSKPPKCKF-----PQGFFHPNVYPSGTVCLSILN 99
           PS PP             F+PN+Y  G VCLSILN
Sbjct: 140 PSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILN 174

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 95.6 bits (238), Expect = 4e-26
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 14/113 (12%)

Query: 1   MSGGGIARGRLTEERKAWRK---------NHPHGFVAKPETKDGSVNLMIWECIIPGKTG 51
           M+       R+ +E K   K         N   G +      D + +L  WE II G + 
Sbjct: 3   MAD--TCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDET-DLSKWEAIISGPSD 59

Query: 52  TDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILNEDN 102
           T +E   F + +     YP  PPK  F Q    H NV   +G +CL+IL  + 
Sbjct: 60  TPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEE 112

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 95.0 bits (237), Expect = 4e-26
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  
Sbjct: 6   LPKRIIKETEKLVSDPVPGITAEP---HDD-NLRYFQVTIEGPEQSPYEDGIFELELYLP 61

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           +DYP + PK +F    +HPN+   G +CL +L  +
Sbjct: 62  DDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTN 96

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 95.1 bits (237), Expect = 4e-26
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 7  ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
             RL  E        P G        D    +      I G   T +E G F L +   
Sbjct: 5  RASRLKRELHMLATEPPPGITCWQ---DKD-QMDDLRAQILGGANTPYEKGVFKLEVIIP 60

Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
          E YP +PP+ +F    +HPN+  +G +CL +L 
Sbjct: 61 ERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK 93

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 94.6 bits (236), Expect = 5e-26
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           GI R R+T+E +      P G +A P       N   +  +I G  GT +EGG + L L+
Sbjct: 1   GIPR-RITKETQNLANEPPPGIMAVP---VPE-NYRHFNILINGPDGTPYEGGTYKLELF 55

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
             E YP +PPK +F    +HPN+   G +CL IL + 
Sbjct: 56  LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK 92

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 95.6 bits (238), Expect = 5e-26
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +  R+ +E      + P    A P    G  N+  W   I G  G+ +EGG F L + F+
Sbjct: 49  SAKRIQKELADITLDPPPNCSAGP---KGD-NIYEWRSTILGPPGSVYEGGVFFLDITFT 104

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
            +YP KPPK  F    +H N+   G +CL IL +
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILKD 138

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 93.7 bits (233), Expect = 1e-25
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 23  PHGFVAKPETKDGSVNLMIWECIIPGKTGTDW--EGGYFPLTLYFSEDYPSKPPKCKFPQ 80
           PH         D    +  W   +     + +   G  + L++ FS+DYP +PP  +F  
Sbjct: 36  PHSTAIFSVDTD---TIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVT 92

Query: 81  GFFHPNVYPSGTVCLSILNED 101
             + P V   G +C  ++N+ 
Sbjct: 93  PVYSPLVTGEGGICDRMVNDF 113

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 93.6 bits (233), Expect = 2e-25
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +    L +E      N P              N +    +        ++GG F      
Sbjct: 14  VRDKLLVKEVAELEANLPCTCKVHFPDP----NKLHCFQLTVTPDEGYYQGGKFQFETEV 69

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSC 107
            + Y   PPK K     +HPN+  +G +CLS+L E ++  + 
Sbjct: 70  PDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG 111

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 92.7 bits (231), Expect = 3e-25
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +A + +       +  ++    ++   +    G  GT +EGG F + +    +Y
Sbjct: 5   RIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 70  PSKPPKCKFPQGFFHPNVYP-SGTVCLSILNED 101
           P KPPK +F    +HPN+   +G +CL IL   
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNA 94

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 94.1 bits (234), Expect = 4e-25
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              R+ +E +A + +       +  ++    ++   +    G  GT +EGG F + +   
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVP 59

Query: 67  EDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNED 101
            +YP KPPK +F    +HPN+   +G +CL IL   
Sbjct: 60  MEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNA 95

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 92.9 bits (231), Expect = 6e-25
 Identities = 26/95 (27%), Positives = 36/95 (37%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  +  +                    +      +I       +  G     L F+
Sbjct: 30  ARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFN 89

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           E YP +PPK    +  FHPN+   G VCL+IL ED
Sbjct: 90  EVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRED 124

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 92.4 bits (230), Expect = 6e-25
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
            A+ R+ ++                       +L+ ++ +I       ++ G F  +   
Sbjct: 26  AAQLRIQKDINELNLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKV 79

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
            + YP  PPK K     +HPN+   G V L+IL ED
Sbjct: 80  GQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED 115

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 91.0 bits (226), Expect = 6e-24
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G     RL +E K     +     A       S N   W   I G  GT +EGG+F L +
Sbjct: 21  GSKELLRLQKELKDIENENVQEIDAHI---KDS-NFFEWVGFIKGPEGTPYEGGHFTLAI 76

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNED 101
               DYP  PPK KF    +HPN+   +G +CL +L  +
Sbjct: 77  TIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNE 115

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 87.7 bits (218), Expect = 2e-23
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 1   MSGGGIARGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57
           M+   IA  R+  E K   K+     +        +    N       I G   T +EGG
Sbjct: 3   MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGG 58

Query: 58  YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNED 101
            + L +   E YP  PPK +F    +HPN+   +G +CL IL + 
Sbjct: 59  RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 103

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 88.3 bits (219), Expect = 4e-23
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL ++    +K+      A+P       N++ W  ++ G   T +EGGY+   L F 
Sbjct: 15  ATQRLKQDYLRIKKDPVPYICAEPLPS----NILEWHYVVRGPEMTPYEGGYYHGKLIFP 70

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
            ++P KPP         +     +  +CLSI +
Sbjct: 71  REFPFKPPSIYMIT--PNGRFKCNTRLCLSITD 101

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 87.0 bits (216), Expect = 6e-23
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           +L+ ++ +I       ++ G F  +    + YP  PPK K     +HPN+   G VCL+I
Sbjct: 33  DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNI 91

Query: 98  LNED 101
           L ED
Sbjct: 92  LRED 95

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 85.4 bits (212), Expect = 2e-22
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            LT ++  + K    G+  +    +   +   ++ +  G  GT +EGG + + +   +DY
Sbjct: 3   SLTRKQCDFTKLIMAGYDLEL---NNG-STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDY 58

Query: 70  PSKPPKCKFPQGFFHPNV-YPSGTVCLSILNED 101
           P   P   F     HPNV   SG+VCL ++N+ 
Sbjct: 59  PFASPSIGFMNKLLHPNVDEASGSVCLDVINQT 91

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 85.9 bits (213), Expect = 2e-22
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS     + R+  +     ++     +           L  +     G  GT +EGG + 
Sbjct: 20  MSSPSPGKRRMDTDVIKLIESKHEVTILG--------GLNEFVVKFYGPQGTPYEGGVWK 71

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
           + +   + YP K P   F    FHPN+   SGTVCL ++N+
Sbjct: 72  VRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ 112

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 86.0 bits (213), Expect = 3e-22
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R  +   A   +  HG  A+     G  ++  W   I G  GT +EGG+F L +    DY
Sbjct: 49  RAHDSEPAATHSTSHGVSAQI---VGG-DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 104

Query: 70  PSKPPKCKFPQGFFHPNVYP-SGTVCLSILNED 101
           P  PPK KF    +HPN+   +G +CL IL  +
Sbjct: 105 PYNPPKMKFVTKIWHPNISSQTGAICLDILKHE 137

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 85.9 bits (213), Expect = 3e-22
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 1   MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57
           M+   IA  R+  E K   K+     +        +    N       I G   T +EGG
Sbjct: 2   MAN--IAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGG 55

Query: 58  YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNED 101
            + L +   E YP  PPK +F    +HPN+   +G +CL IL + 
Sbjct: 56  RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 100

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 84.6 bits (209), Expect = 3e-21
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 6   IARGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           IA  R+  E K   K+     +             N       I G   T +EGG + L 
Sbjct: 57  IAVQRIKREFKEVLKSEETSKNQIKVDLV----DENFTELRGEIAGPPDTPYEGGRYQLE 112

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNED 101
           +   E YP  PPK +F    +HPN+   +G +CL IL + 
Sbjct: 113 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 152

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 79.7 bits (197), Expect = 5e-20
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLS 96
            +  +     G  GT +E G + L +    DYP K P   F     HPNV   SG+VCL 
Sbjct: 36  TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLD 95

Query: 97  ILNED 101
           ++N+ 
Sbjct: 96  VINQT 100

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 76.1 bits (187), Expect = 2e-18
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 14/119 (11%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG------------ 48
           +SG   A  RL +E +   ++  +             +L  W   +              
Sbjct: 22  VSGSVQASDRLMKELRDIYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQ 80

Query: 49  KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN-VYPSGTVCLSILNEDNVSSS 106
                    Y  L   F +++P  PP  +          V   G +C+ +L +   SS+
Sbjct: 81  ILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSA 139

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 11/80 (13%)

Query: 34  DGSVNLMIWECIIPGKTGTDWEGG--YFPLTLYFSEDYPSKPPKCKFP-----QGFFHPN 86
            GS  LM     IP      + G     P+ L+  + YP  PP C              +
Sbjct: 48  TGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKH 103

Query: 87  VYPSGTVCLSILNEDNVSSS 106
           V  +G + L  L+E     S
Sbjct: 104 VDANGKIYLPYLHEWKHPQS 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.95
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.79
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.78
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.55
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	96.27
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	95.16
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	95.03
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	94.6
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	94.21
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	92.23
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	91.79
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	90.74

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=3.2e-43  Score=240.01  Aligned_cols=117  Identities=25%  Similarity=0.393  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCC-cc
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FH   84 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H   84 (134)
                      .|.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++ ||
T Consensus         6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~----~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H   81 (125)
T 2fo3_A            6 NANYRIQKELHNFLNNPPINCTLDVHPN----NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKH   81 (125)
T ss_dssp             ---CHHHHHHHHHHHSCCTTEEEEECTT----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCcc----hhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCC
Confidence            5789999999999999999999988765    999999999999999999999999999999999999999999997 99


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcchhc
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLDDMM  131 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~d~~  131 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|.++-.+.+
T Consensus        82 Pnv~~~G~iCl~iL~~-----~W~P~~~i~~vl~si~~ll~~p~~~~~  124 (125)
T 2fo3_A           82 THVYSNGDICLSLLGD-----DYNPSLSISGLVLSIISMLSSAKEKKL  124 (125)
T ss_dssp             TTBCTTSBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHC-------
T ss_pred             CcCCCCCEEEchhcCC-----CCCCCCcHHHHHHHHHHHHhCcccccC
Confidence            9999999999999986     799999 99999999999998877654

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1e-42  Score=247.55  Aligned_cols=121  Identities=36%  Similarity=0.664  Sum_probs=110.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ||  +.|.+||++|+++|+++++.|+++.+.+++   |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|
T Consensus         1 M~--~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~---~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t   75 (165)
T 2ucz_A            1 MS--KTAQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP   75 (165)
T ss_dssp             -C--HHHHHHHHHHHHHHHHSCCTTEEEEESSSS---CCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEECCCC---CccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeC
Confidence            88  899999999999999999999999987643   9999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           81 GFFHPNVYPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        81 ~i~HPnV~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ++|||||+.+|+||+++|..+.        ..++|+|++ |++||++|+++|.+|
T Consensus        76 ~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~P  130 (165)
T 2ucz_A           76 SILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEP  130 (165)
T ss_dssp             CCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCC
Confidence            9999999999999999994210        023899999 999999999998775

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=7.4e-43  Score=249.10  Aligned_cols=115  Identities=37%  Similarity=0.645  Sum_probs=109.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ||  +.+.+||++|+++|+++++.|+.+.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         1 Ms--~~a~~RL~kEl~~l~~~~~~gi~~~p~~~----nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t   74 (169)
T 1ayz_A            1 MS--TPARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS   74 (169)
T ss_dssp             -C--CHHHHHHHHHHHHHHHSCCTTEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEecCC----ccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCcccccc
Confidence            88  78999999999999999999999998865    9999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           81 GFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        81 ~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      +||||||+.+|+||+++|.+     +|+|++ |++||++|+++|..|
T Consensus        75 ~i~HPNI~~~G~ICl~iL~~-----~WsP~~~i~~vL~si~~ll~~P  116 (169)
T 1ayz_A           75 EMFHPNVYANGEICLDILQN-----RWTPTYDVASILTSIQSLFNDP  116 (169)
T ss_dssp             CCCCTTBCTTSBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCCeEeehhhcc-----CCCCcCcHHHHHHHHHHHHhCC
Confidence            99999999999999999987     799999 999999999998774

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=3.3e-42  Score=242.04  Aligned_cols=116  Identities=37%  Similarity=0.722  Sum_probs=110.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ||  +.+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|
T Consensus         1 Ms--~~a~~RL~~E~~~l~~~~~~~i~~~~~~~----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   74 (152)
T 2aak_A            1 MS--TPARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS   74 (152)
T ss_dssp             CC--CHHHHHHHHHHHHHHHSCCTTEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEeCCC----CccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEec
Confidence            88  88999999999999999999999988865    9999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           81 GFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        81 ~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      ++|||||+.+|+||+++|.+     +|+|++ |++||.+|+++|.++.
T Consensus        75 ~i~HPnv~~~G~iCl~iL~~-----~W~p~~~i~~vl~~i~~ll~~p~  117 (152)
T 2aak_A           75 RMFHPNIYADGSICLDILQN-----QWSPIYDVAAILTSIQSLLCDPN  117 (152)
T ss_dssp             CCCCTTBCTTSBBCCGGGTT-----SCCTTCCHHHHHHHHHHHHTSCC
T ss_pred             CcccCCCCCCCEEechhhcC-----CCCCCCcHHHHHHHHHHHHhCCC
Confidence            99999999999999999987     799999 9999999999988753

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.3e-42  Score=236.65  Aligned_cols=114  Identities=25%  Similarity=0.409  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCC-c
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-F   83 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~   83 (134)
                      +.+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++ |
T Consensus        19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~----nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~   94 (136)
T 2h2y_A           19 GNANYRIQKELNNFLKNPPINCTIDVHPS----NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPK   94 (136)
T ss_dssp             TSHHHHHHHHHHHHHHSCCTTEEEEECTT----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEEeccc----cccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCC
Confidence            46889999999999999999999988765    999999999999999999999999999999999999999999996 9


Q ss_pred             cCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           84 HPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        84 HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      ||||+.+|+||+++|.+     +|+|++ |++||++|+++|.++-
T Consensus        95 HPnv~~~G~ICl~iL~~-----~WsP~~ti~~vL~si~sll~~p~  134 (136)
T 2h2y_A           95 HTHVYSNGDICLSVLGD-----DYNPSLSISGLILSIISMLSSAK  134 (136)
T ss_dssp             CTTBCTTCCBCCGGGTT-----TCCTTCCHHHHHHHHHHHHSSSC
T ss_pred             CCcCCCCCEEECccccC-----CCCCCCcHHHHHHHHHHHHhCcC
Confidence            99999999999999987     799999 9999999999988764

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=4.8e-42  Score=242.36  Aligned_cols=121  Identities=59%  Similarity=1.053  Sum_probs=110.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeec
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~   79 (134)
                      ||  +.+.+||++|+++|+++++.|+.+.+.++ ++..|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.
T Consensus         1 Ms--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   78 (157)
T 2gjd_A            1 MS--SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP   78 (157)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc
Confidence            88  78999999999999999999999988752 3334899999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           80 QGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        80 t~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |++|||||+.+|+||+++|..++   +|+|++ |++||++|+++|.+|
T Consensus        79 t~i~HPnv~~~G~iCl~iL~~~~---~W~p~~~i~~vl~~i~~ll~~p  123 (157)
T 2gjd_A           79 AGFYHPNVYPSGTICLSILNEDQ---DWRPAITLKQIVLGVQDLLDSP  123 (157)
T ss_dssp             TTCCCTTBCTTSBBCCGGGCTTT---TCCTTCCHHHHHHHHHHHHTSC
T ss_pred             CCCccCCCCCCCcEeeecccCCC---CCCCCCcHHHHHHHHHHHHhCC
Confidence            99999999999999999998743   699999 999999999999775

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=4.8e-42  Score=243.62  Aligned_cols=121  Identities=51%  Similarity=0.974  Sum_probs=111.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCC
Q 032754            4 GGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (134)
Q Consensus         4 ~~~~~kRl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (134)
                      ...|.+||++|+++|++++++|+++.+.++ |+..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i   87 (163)
T 3rcz_B            8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL   87 (163)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence            478999999999999999999999998764 4455899999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           83 FHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        83 ~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      |||||+.+|+||+++|...+   +|+|++ |++||++|+++|.+|-
T Consensus        88 ~HPnV~~~G~iCl~iL~~~~---~W~p~~ti~~vL~~i~~ll~~P~  130 (163)
T 3rcz_B           88 FHPNVYPSGTVCLSILNEEE---GWKPAITIKQILLGIQDLLDDPN  130 (163)
T ss_dssp             CSTTBCTTSBBCCGGGCTTT---TCCTTCCHHHHHHHHHHHHTSCC
T ss_pred             ccCCCCCCCcEeccccCCCC---CcCCcCcHHHHHHHHHHHHhCCC
Confidence            99999999999999998733   699999 9999999999997743

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=8.6e-42  Score=242.54  Aligned_cols=120  Identities=38%  Similarity=0.606  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.|.|||++|+++|+++++.|+++.+.+++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~---nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFH   78 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSTT---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCCC---CccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCcc
Confidence            678999999999999999999999887754   99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           85 PNVYPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      |||+.+|+||+++|..+.        .+++|+|++ |++||++|+++|.+|-
T Consensus        79 PNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn  130 (164)
T 3h8k_A           79 PNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN  130 (164)
T ss_dssp             TTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCC
Confidence            999999999999997321        123899999 9999999999988743

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.5e-42  Score=243.13  Aligned_cols=113  Identities=26%  Similarity=0.490  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      ..+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||
T Consensus         4 ~~~~~RL~kEl~~l~~~~~~~i~~~~~~~----~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   79 (154)
T 2c2v_B            4 AGLPRRIIKETQRLLAEPVPGIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYH   79 (154)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEECSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCC----chheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCccc
Confidence            67889999999999999999999998875    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        80 Pnv~~~G~iCl~iL~~-----~W~p~~~i~~vl~~i~~ll~~p  117 (154)
T 2c2v_B           80 PNVDKLGRICLDILKD-----KWSPALQIRTVLLSIQALLSAP  117 (154)
T ss_dssp             TTBCTTCBBCCHHHHT-----SCCTTCCHHHHHHHHHHHTTSC
T ss_pred             CcCccCCeEEchhccC-----CCCCCCcHHHHHHHHHHHHhCC
Confidence            9999999999999986     799999 999999999998874

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.6e-42  Score=241.87  Aligned_cols=113  Identities=25%  Similarity=0.468  Sum_probs=108.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      ..+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   87 (158)
T 1zdn_A           12 PHIIRLVYKEVTTLTADPPDGIKVFPNEE----DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEECSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCC----ChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCccc
Confidence            77899999999999999999999998765    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|..+
T Consensus        88 Pnv~~~G~iCl~iL~~-----~W~p~~~i~~vL~~i~~ll~~p  125 (158)
T 1zdn_A           88 PNVGANGEICVNVLKR-----DWTAELGIRHVLLTIKCLLIHP  125 (158)
T ss_dssp             TTBCTTSBBCHHHHTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCEEehhhcCC-----CCCCCCcHHHHHHHHHHHHhCC
Confidence            9999999999999987     799999 999999999998764

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=9.4e-42  Score=240.62  Aligned_cols=113  Identities=32%  Similarity=0.475  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++||
T Consensus         8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   83 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLMSGDPGITAFPDGD----NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWH   83 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEESSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCC----CccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCccc
Confidence            56899999999999999999999988765    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        84 Pnv~~~G~iCl~iL~~-----~W~p~~~i~~vL~si~~ll~~p  121 (156)
T 2e2c_A           84 PNVDQSGNICLDILKE-----NWTASYDVRTILLSLQSLLGEP  121 (156)
T ss_dssp             TTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHTTSC
T ss_pred             CCCccCceEECccccc-----cCCCCCcHHHHHHHHHHHHhCC
Confidence            9999999999999987     799999 999999999998774

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=1.3e-41  Score=238.69  Aligned_cols=113  Identities=25%  Similarity=0.540  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.|.|||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++||
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   78 (151)
T 4gpr_A            3 AMAMRRIQKELREIQQDPPCNCSAGPVGD----DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYH   78 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSS----CTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEcCC----CceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCccc
Confidence            67899999999999999999999999875    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        79 Pnv~~~G~iCl~iL~~-----~W~p~~~i~~vl~~i~~ll~~p  116 (151)
T 4gpr_A           79 PNINKNGVICLDILKD-----QWSPALTLSRVLLSISSLLTDP  116 (151)
T ss_dssp             TTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHCC
T ss_pred             ceECCCCEEEcccccC-----CCCCCCcHHHHHHHHHHHhcCC
Confidence            9999999999999987     899999 999999999998874

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=9.7e-42  Score=239.16  Aligned_cols=113  Identities=28%  Similarity=0.556  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      ..+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAGPVGD----DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   78 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCC----cceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCccc
Confidence            67899999999999999999999998775    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        79 Pnv~~~G~iCl~iL~~-----~W~p~~~i~~vl~~i~~ll~~p  116 (150)
T 1z2u_A           79 PNINSNGSICLDILRS-----QWSPALTISKVLLSICSLLCDP  116 (150)
T ss_dssp             TTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CcCCCCCeEeeccccC-----CCCCCCCHHHHHHHHHHHhhCC
Confidence            9999999999999997     799999 999999999998754

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-41  Score=242.21  Aligned_cols=118  Identities=23%  Similarity=0.401  Sum_probs=109.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754            4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (134)
Q Consensus         4 ~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (134)
                      ...+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~----~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~   77 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQDKD----QMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIY   77 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeCCC----chheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCc
Confidence            367899999999999999999999998775    9999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           84 HPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        84 HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ||||+.+|+||+++|..+ ..++|+|++ |++||++|+++|.++
T Consensus        78 HPNv~~~G~iCl~iL~~~-~~~~W~p~~~i~~vL~si~~ll~~p  120 (169)
T 1yh2_A           78 HPNIDSAGRICLDVLKLP-PKGAWRPSLNIATVLTSIQLLMSEP  120 (169)
T ss_dssp             BTTBCTTCBBCCGGGSCT-TTSCCCTTSCHHHHHHHHHHHHHSC
T ss_pred             cccCCcCCeEecccccCC-cccCCCCCCcHHHHHHHHHHHHhCC
Confidence            999999999999999821 011799999 999999999998774

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=1.7e-41  Score=244.81  Aligned_cols=122  Identities=30%  Similarity=0.474  Sum_probs=107.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      |++ +.+.|||++|+++|+++++.|+++.+.+++   |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|
T Consensus         3 m~~-~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~---nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   78 (183)
T 3rz3_A            3 MGS-PSSQKALLLELKGLQEEPVEGFRVTLVDEG---DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT   78 (183)
T ss_dssp             --C-CHHHHHHHHHHHHHHHSCCTTEEEEECTTC---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             Ccc-hHHHHHHHHHHHHHHhCCCCCEEEEecCcc---chhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecC
Confidence            553 678999999999999999999999855443   9999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           81 GFFHPNVYPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        81 ~i~HPnV~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ++|||||+.+|+||+++|..+.        ..++|+|++ |++||++|+++|.+|
T Consensus        79 ~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~P  133 (183)
T 3rz3_A           79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEP  133 (183)
T ss_dssp             CCCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CCccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCC
Confidence            9999999999999999997310        013899999 999999999998774

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.6e-41  Score=241.44  Aligned_cols=113  Identities=27%  Similarity=0.560  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||
T Consensus        18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~----nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~H   93 (165)
T 2c4o_A           18 SMALKRIHKELNDLARDPPAQCSAGPVGD----DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   93 (165)
T ss_dssp             HHHHHHHHHHHHHHHSSCCTTEEEEESSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCC----CcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcC
Confidence            66899999999999999999999998765    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        94 PnV~~~G~ICl~iL~~-----~W~P~~ti~~vL~si~~ll~~p  131 (165)
T 2c4o_A           94 PNINSNGSICLDILRS-----QWSPALTISKVLLSICSLLCDP  131 (165)
T ss_dssp             TTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CcCCCCCeEeehhhcC-----CCCCcCcHHHHHHHHHHHHhCC
Confidence            9999999999999997     799999 999999999998764

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.2e-42  Score=244.30  Aligned_cols=115  Identities=30%  Similarity=0.489  Sum_probs=109.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      |+  +.+.+||++|+++|++++++|+.+.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        20 M~--~~a~~RL~kEl~~l~~~~~~gi~~~p~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T   93 (169)
T 1yrv_A           20 MH--GRAYLLLHRDFCDLKENNYKGITAKPVSE----DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT   93 (169)
T ss_dssp             GG--CHHHHHHHHHHHHHHHHCCTTEEEEECST----TSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS
T ss_pred             cC--hHHHHHHHHHHHHHHhCCCCCEEEEEcCC----ccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecC
Confidence            66  78999999999999999999999988775    9999999999999999999999999999999999999999999


Q ss_pred             CCccCCC-CCCCceeeccCC--CCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           81 GFFHPNV-YPSGTVCLSILN--EDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        81 ~i~HPnV-~~~G~vcl~~l~--~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      +|||||| +.+|+||+++|.  +     +|+|++ |++||++|+++|.+|
T Consensus        94 ~i~HPNI~~~~G~ICL~iL~~~~-----~WsP~~ti~~vL~sI~sll~~P  138 (169)
T 1yrv_A           94 IPFHPNVDPHTGQPCIDFLDNPE-----KWNTNYTLSSILLALQVMLSNP  138 (169)
T ss_dssp             CCCCTTBCTTTCCBCCHHHHCGG-----GCCTTCCHHHHHHHHHHHHTSC
T ss_pred             CCccCcccCCCCeEeehhhcCCc-----CCCCcCCHHHHHHHHHHHHhCC
Confidence            9999999 899999999998  4     799999 999999999998875

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.9e-41  Score=241.20  Aligned_cols=113  Identities=27%  Similarity=0.551  Sum_probs=108.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   95 (166)
T 2ayv_A           20 QGALKRINKELNDLSKDPPTNCSAGPVGD----DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH   95 (166)
T ss_dssp             TTHHHHHHHHHHHHHHSCCTTEEEEECSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCC----CcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence            56899999999999999999999998765    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        96 PNI~~~G~ICL~iL~~-----~WsP~~ti~~vL~sI~sll~~p  133 (166)
T 2ayv_A           96 PNINSQGAICLDILKD-----QWSPALTISKVLLSISSLLTDP  133 (166)
T ss_dssp             TTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CcCCCCCeEEcccccc-----cCCCCCcHHHHHHHHHHHHhCC
Confidence            9999999999999997     799999 999999999998774

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8e-42  Score=236.01  Aligned_cols=108  Identities=29%  Similarity=0.482  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEe--ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc--
Q 032754            8 RGRLTEERKAWRKNHPHGFVAK--PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF--   83 (134)
Q Consensus         8 ~kRl~~El~~l~~~~~~~~~~~--~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--   83 (134)
                      .+||++|+++|++++++|+++.  +.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|  
T Consensus        24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~   99 (136)
T 2a7l_A           24 QKRLQKELLALQNDPPPGMTLNEKSVQN----SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV   99 (136)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCC----SCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeCcc----ccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence            4999999999999999999865  5444    9999999999999999999999999999999999999999999999  


Q ss_pred             cCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhC
Q 032754           84 HPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKI  124 (134)
Q Consensus        84 HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~  124 (134)
                      ||||+.+|+||+++|.+     +|+|++ |++||++|+++|.
T Consensus       100 HPNV~~~G~ICL~iL~~-----~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          100 HPHVYSNGHICLSILTE-----DWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             BTTBCTTCBBCCGGGTT-----TCCTTSCHHHHHHHHHHHTC
T ss_pred             CccCCCCCeEEchhcCC-----CCCCCCcHHHHHHHHHHHhC
Confidence            99999999999999987     899999 9999999999873

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=3e-41  Score=241.45  Aligned_cols=120  Identities=33%  Similarity=0.454  Sum_probs=109.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754            4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (134)
Q Consensus         4 ~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (134)
                      .+.+.+||++|+++|+++++.|+++.+.+++   |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||
T Consensus        15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~---nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~   91 (172)
T 2awf_A           15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW   91 (172)
T ss_dssp             CCTTHHHHHHHHHHHHHSCCTTEEEEESSTT---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCEEEEECCCc---cccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc
Confidence            4678999999999999999999999987643   9999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           84 HPNVYPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        84 HPnV~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ||||+.+|+||+++|..+.        ..++|+|++ |++||++|+++|.+|
T Consensus        92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~P  143 (172)
T 2awf_A           92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  143 (172)
T ss_dssp             CTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             cCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCc
Confidence            9999999999999997310        123799999 999999999998874

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.3e-41  Score=238.31  Aligned_cols=111  Identities=30%  Similarity=0.585  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      +.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   77 (149)
T 2r0j_A            2 IPRRITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPN   77 (149)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCC----cccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCC
Confidence            469999999999999999999998775    9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |+.+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        78 v~~~G~iCl~iL~~-----~W~p~~~i~~vl~~i~~ll~~p  113 (149)
T 2r0j_A           78 IDKLGRICLDILKD-----KWSPALQIRTVLLSIQALLSSP  113 (149)
T ss_dssp             BCTTCBBCCGGGTT-----TCCTTSCHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEechhcCC-----CCCCCCcHHHHHHHHHHHHhCC
Confidence            99999999999987     799999 999999999998765

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-41  Score=244.37  Aligned_cols=113  Identities=30%  Similarity=0.437  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.+||++|+++|+++++.||++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||
T Consensus        29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  104 (179)
T 1i7k_A           29 GPVGKRLQQELMTLMMSGDKGISAFPESD----NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH  104 (179)
T ss_dssp             -CHHHHHHHHHHHHHHHCCTTEEEEEETT----EEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEcCC----cccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCcc
Confidence            67889999999999999999999998765    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus       105 PNV~~~G~ICL~iL~~-----~WsP~~ti~~vL~sI~sll~~P  142 (179)
T 1i7k_A          105 PNVDTQGNISLDILKE-----KWSALYDVRTILLSIQSLLGEP  142 (179)
T ss_dssp             TTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CccccCCeEEcccCcC-----cCCCCCCHHHHHHHHHHHHhCC
Confidence            9999999999999987     799999 999999999998764

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=3.4e-41  Score=238.86  Aligned_cols=122  Identities=61%  Similarity=1.090  Sum_probs=111.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecC-CCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeec
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~-~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~   79 (134)
                      ||  +.+.+||++|+++|+++++.|+.+.+.. +++.+|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.
T Consensus         4 M~--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   81 (161)
T 2grr_A            4 MS--GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE   81 (161)
T ss_dssp             CC--HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             cc--HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence            77  7899999999999999999999998864 22334999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           80 QGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        80 t~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      |++|||||+.+|+||+++|...+   +|+|++ |++||++|+++|.+|.
T Consensus        82 t~i~HPnv~~~G~iCl~iL~~~~---~W~p~~~i~~vl~~i~~ll~~p~  127 (161)
T 2grr_A           82 PPLFHPNVYPSGTVCLSILEEDK---DWRPAITIKQILLGIQELLNEPN  127 (161)
T ss_dssp             SCCCSTTBCTTSBBCCGGGCTTT---TCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             cCcccCCCCCCCeEeehhcCCCC---CcCCCCcHHHHHHHHHHHHhCCC
Confidence            99999999999999999998632   799999 9999999999987753

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=5.7e-41  Score=237.30  Aligned_cols=115  Identities=26%  Similarity=0.448  Sum_probs=108.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 032754            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~   77 (134)
                      ||  +.+.+||++|+++|+++   ++.|+++.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus         5 Ms--~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~   78 (159)
T 2bep_A            5 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR   78 (159)
T ss_dssp             CC--HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSS----SSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             ch--HHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCC----chheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEE
Confidence            66  78999999999999985   588999999876    9999999999999999999999999999999999999999


Q ss_pred             ecCCCccCCCC-CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           78 FPQGFFHPNVY-PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        78 f~t~i~HPnV~-~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |.|+||||||+ .+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        79 f~t~i~HPni~~~~G~iCl~iL~~-----~W~p~~~i~~vl~~i~~ll~~p  124 (159)
T 2bep_A           79 FITKIWHPNISSVTGAICLDILKD-----QWAAAMTLRTVLLSLQALLAAA  124 (159)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             eeCCCCccCCCCCCCEEeChhhhc-----cCCCCCcHHHHHHHHHHHHhCC
Confidence            99999999998 599999999997     799999 999999999998775

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=2.5e-41  Score=238.25  Aligned_cols=113  Identities=26%  Similarity=0.504  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.+||++|+++|++++++|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++||
T Consensus         4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~----~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   79 (155)
T 1jat_A            4 ASLPKRIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH   79 (155)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEETT----EEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCC----chhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeeccccc
Confidence            45789999999999999999999998775    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        80 Pnv~~~G~iCl~iL~~-----~W~p~~~i~~vl~~i~~ll~~p  117 (155)
T 1jat_A           80 PNIDRLGRICLDVLKT-----NWSPALQIRTVLLSIQALLASP  117 (155)
T ss_dssp             TTBCTTCCBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCEEEchhhcc-----CCCCCCCHHHHHHHHHHHHhCC
Confidence            9999999999999987     799999 999999999998875

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=4.3e-41  Score=235.61  Aligned_cols=112  Identities=25%  Similarity=0.435  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      +.+||++|+++|+++++.|+++.+.+++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~---~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSS---CSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCC---CceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCC
Confidence            3799999999999999999999998754   8999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           87 VYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        87 V~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |+. +|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        79 i~~~~G~iCl~iL~~-----~W~p~~~i~~vl~~i~~ll~~p  115 (149)
T 1fxt_A           79 ISSVTGAICLDILKN-----AWSPVITLKSALISLQALLQSP  115 (149)
T ss_dssp             BCSSSCCBCCHHHHT-----SCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CcCCCCeEeCCcCCC-----CCCCCCcHHHHHHHHHHHHhCC
Confidence            998 99999999987     799999 999999999998775

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=1.8e-40  Score=234.65  Aligned_cols=116  Identities=20%  Similarity=0.220  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCC-eEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754            5 GIARGRLTEERKAWRKNHPHG-FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (134)
                      ..+.+||++|+++|++++++| +++.+.+++ +.|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||
T Consensus        24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~-d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  102 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDE-DMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  102 (160)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTT-CTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEecCCc-cccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence            568899999999999999888 777774432 113899999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CCCceeeccCC--CCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           84 HPNVY-PSGTVCLSILN--EDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        84 HPnV~-~~G~vcl~~l~--~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ||||+ .+|+||+++|.  +     +|+|++ |++||++|+++|.++
T Consensus       103 HPNV~~~~G~ICl~iL~~~~-----~WsP~~ti~~vL~sI~~ll~~~  144 (160)
T 2a4d_A          103 MNGVNSSNGVVDPRAISVLA-----KWQNSYSIKVVLQELRRLMMSK  144 (160)
T ss_dssp             CTTBCTTTCBBCGGGSHHHH-----TCCTTCCHHHHHHHHHHHHTST
T ss_pred             eCCEECCCCEEehhhcCCcc-----CCCccCcHHHHHHHHHHHHccC
Confidence            99998 69999999998  5     799999 999999999999763

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=3.3e-40  Score=239.84  Aligned_cols=113  Identities=27%  Similarity=0.518  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.+||++|+++|+++++.||.+.+.++    |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+|||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  122 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGD----NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH  122 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccC----ccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCcc
Confidence            45789999999999999999999998765    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|..+
T Consensus       123 PNV~~~G~ICL~iL~~-----~WsP~~ti~~vL~sI~~ll~~p  160 (194)
T 3bzh_A          123 CNINSQGVICLDILKD-----NWSPALTISKVLLSICSLLTDC  160 (194)
T ss_dssp             TTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             ceECCCCceechhhhc-----cCCCcCcHHHHHHHHHHHHhCC
Confidence            9999999999999987     799999 999999999998774

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=1.9e-40  Score=242.45  Aligned_cols=115  Identities=26%  Similarity=0.448  Sum_probs=106.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 032754            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~   77 (134)
                      ||  +.|.+||++|+++|+++   ++.|+++.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus         2 Ms--~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~   75 (201)
T 3k9o_A            2 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR   75 (201)
T ss_dssp             ----CTTHHHHHHHHHHHHTCHHHHTTSEEEEECST----TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             Cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCC----CccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccc
Confidence            78  78999999999999986   378999999876    9999999999999999999999999999999999999999


Q ss_pred             ecCCCccCCCC-CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           78 FPQGFFHPNVY-PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        78 f~t~i~HPnV~-~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |.|+||||||+ .+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus        76 f~t~i~HPnv~~~~G~iCl~iL~~-----~W~p~~~i~~vL~~i~~ll~~p  121 (201)
T 3k9o_A           76 FITKIWHPNISSVTGAICLDILKD-----QWAAAMTLRTVLLSLQALLAAA  121 (201)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             cccCcccCCCcCCCCeeeCccccc-----CCCCCCCHHHHHHHHHHHhcCC
Confidence            99999999998 599999999987     899999 999999999998874

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.4e-40  Score=245.22  Aligned_cols=113  Identities=27%  Similarity=0.487  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.+||++|+++|+++++.|+++.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        22 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           22 SKELLRLQKELKDIENENVQEIDAHIKDS----NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             CHHHHHHHHHHHHHHHSCTTTEEEEECSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEEcCC----ccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            67899999999999999999999999875    99999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVY-PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~-~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+ .+|+||+++|.+     +|+|++ |++||++|+++|.+|
T Consensus        98 PNI~~~~G~ICL~iL~~-----~WsP~~ti~~VL~sI~sLL~~P  136 (216)
T 2pwq_A           98 PNISSQTGAICLDVLKN-----EWSPALTIRTALLSIQALLSDP  136 (216)
T ss_dssp             TTBCTTTCBBCCHHHHH-----HCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CCCcCCCCEEEchhhcc-----cCCCCCcHHHHHHHHHHHHhCC
Confidence            9998 599999999987     799999 999999999998774

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=5.5e-40  Score=238.48  Aligned_cols=113  Identities=28%  Similarity=0.511  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHHcCC-------------CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCC
Q 032754            5 GIARGRLTEERKAWRKNHP-------------HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS   71 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~-------------~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~   71 (134)
                      ..+.+||++|+++|+++++             .|+.+.+.++    |+++|+++|.||++|||+||.|+++|.||++||+
T Consensus        31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~  106 (193)
T 2f4z_A           31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGG----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPY  106 (193)
T ss_dssp             -CHHHHHHHHHHHHHHC----------------CEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred             CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCC----CcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCC
Confidence            3578999999999999887             7999998875    9999999999999999999999999999999999


Q ss_pred             CCCeeeecCCCccCCCC-CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           72 KPPKCKFPQGFFHPNVY-PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        72 ~pP~v~f~t~i~HPnV~-~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      +||+|+|.|+||||||+ .+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus       107 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~-----~WsP~~ti~~vL~sI~sll~~p  158 (193)
T 2f4z_A          107 NPPKMKFVTKIWHPNISSQTGAICLDILKH-----EWSPALTIRTALLSIQAMLADP  158 (193)
T ss_dssp             SCCEEEESSCCCBTTBCTTTCBBCCGGGTT-----TCCTTSCHHHHHHHHHHHHHSC
T ss_pred             CCCeEEEecCCccCCCcCCCCEEECccccc-----cCCCCCCHHHHHHHHHHHHhCC
Confidence            99999999999999998 699999999987     799999 999999999998774

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=1.1e-39  Score=232.32  Aligned_cols=118  Identities=19%  Similarity=0.321  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.+||++|+++|+++++.|+++.+.+++   |++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~---~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   88 (167)
T 3fn1_B           13 SVRDKLLVKEVAELEANLPCTCKVHFPDPN---KLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH   88 (167)
T ss_dssp             CHHHHHHHHHHHHHGGGSCTTEEEECSSSS---CTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCCCC---cceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence            568999999999999999999999876543   899999999 8999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCC-CCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDN-VSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~-~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|..+. .+++|+|++ |++||++|+++|.++
T Consensus        89 Pnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~  132 (167)
T 3fn1_B           89 PNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDL  132 (167)
T ss_dssp             SSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTT
T ss_pred             CCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCC
Confidence            999999999999998631 123699999 999999999999884

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=5.5e-40  Score=227.39  Aligned_cols=118  Identities=22%  Similarity=0.312  Sum_probs=103.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHc-CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeec
Q 032754            1 MSGGGIARGRLTEERKAWRKN-HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~-~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~   79 (134)
                      ||. ..+.+||++|+++|+++ ++.|+++.+.+++ +.|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.
T Consensus         2 m~~-~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~-d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   79 (138)
T 1jat_B            2 MSK-VPRNFRLLEELEKGEKGFGPESCSYGLADSD-DITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI   79 (138)
T ss_dssp             -CC-CCHHHHHHHHHHHHHC----CCEEEEESSTT-CTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             cch-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-CCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE
Confidence            663 56789999999999998 7889999886431 12599999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCC-Cce--eeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           80 QGFFHPNVYPS-GTV--CLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        80 t~i~HPnV~~~-G~v--cl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |+||||||+.+ |+|  |+++|.      +|+|++ |++||++|+++|.++
T Consensus        80 t~i~HPnv~~~~G~i~~cL~~l~------~W~p~~~i~~vl~~i~~ll~~p  124 (138)
T 1jat_B           80 SKINLPCVNPTTGEVQTDFHTLR------DWKRAYTMETLLLDLRKEMATP  124 (138)
T ss_dssp             BCCCCTTBCTTTCBBCTTSHHHH------TCCTTCCHHHHHHHHHHHHTSH
T ss_pred             cccccCCEeCCCCEEeeecccCC------CCCCcCcHHHHHHHHHHHHcCC
Confidence            99999999886 999  999886      499999 999999999998873

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.5e-40  Score=244.94  Aligned_cols=113  Identities=25%  Similarity=0.424  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   85 (134)
                      .+.+||++|+++|++++++|+++.+.+++   ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~---~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HP   78 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP   78 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSS---SCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCS
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCc---cccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccC
Confidence            47899999999999999999999987753   677999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           86 NVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        86 nV~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ||+. +|+||+++|.+     +|+|++ |++||++|+++|.+|
T Consensus        79 NI~~~~G~ICL~iL~~-----~WsP~~ti~~VL~sI~sLL~~P  116 (215)
T 1tte_A           79 NISSVTGAICLDILRN-----AWSPVITLKSALISLQALLQSP  116 (215)
T ss_dssp             SSCSSSSCCCSSTTTC-----CSCTTCCHHHHHHHHHHHHTSC
T ss_pred             cCcCCCCEEECccCCC-----CCCCcCcHHHHHHHHHHHHhCC
Confidence            9998 99999999987     899999 999999999998874

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=1.1e-39  Score=229.75  Aligned_cols=111  Identities=24%  Similarity=0.483  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEE-eecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            6 IARGRLTEERKAWRKNHPHGFVA-KPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~-~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      .+.+||++|+++|+++++.|+.+ .+.++    |+++|+++|. |++|+|+||.|+++|.||++||++||+|+|.|++||
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~----~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDA----NVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYH   78 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSS----CTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCC----chheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCcc
Confidence            37899999999999999999999 55554    9999999999 999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccC-CCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSIL-NEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l-~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++| .+     +|+|++ |++||++|+++|.++
T Consensus        79 PnV~~~G~iCl~iL~~~-----~W~p~~~i~~vl~~i~~ll~~p  117 (155)
T 1wzv_A           79 PNVDENGQICLPIISSE-----NWKPCTKTCQVLEALNVLVNRP  117 (155)
T ss_dssp             TTBCTTCBCCCGGGCTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CcCCCCCeEeecCCCcc-----CCCCCCcHHHHHHHHHHHHhCC
Confidence            99999999999999 55     799999 999999999998764

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=2.6e-39  Score=231.40  Aligned_cols=117  Identities=27%  Similarity=0.413  Sum_probs=103.7

Q ss_pred             CCcchHHHHHHHHHHHHHHH-c-C------CC---CeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCC
Q 032754            1 MSGGGIARGRLTEERKAWRK-N-H------PH---GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY   69 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~-~-~------~~---~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~Y   69 (134)
                      ||  +.+.+||++|+++|++ + +      +.   ++.+.+.+++   |+++|+++|.||++|||+||.|+++|.||++|
T Consensus         3 Ms--~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~---nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~Y   77 (172)
T 2y9m_A            3 MA--DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDET---DLSKWEAIISGPSDTPYENHQFRILIEVPSSY   77 (172)
T ss_dssp             -C--HHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTT---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTT
T ss_pred             Cc--HHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCC---chhEEEEEEECCCCCcccCCEEEEEEECCCcC
Confidence            77  8899999999999998 5 3      33   4566773332   99999999999999999999999999999999


Q ss_pred             CCCCCeeeecC-CCccCCC-CCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           70 PSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        70 P~~pP~v~f~t-~i~HPnV-~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |++||+|+|.| +|||||| +.+|+||+++|..+    +|+|++ |++||++|+++|.++
T Consensus        78 P~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~----~W~p~~~i~~vL~si~~ll~~p  133 (172)
T 2y9m_A           78 PMNPPKISFMQNNILHCNVKSATGEICLNILKPE----EWTPVWDLLHCVHAVWRLLREP  133 (172)
T ss_dssp             TTSCCEEEECTTSCCCTTEETTTTEECCGGGSTT----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeeCCeecCCCcCCCCEEeccccCCC----CCCCcCcHHHHHHHHHHHHhCC
Confidence            99999999999 9999999 68999999999832    799999 999999999998764

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=6.1e-40  Score=234.10  Aligned_cols=116  Identities=20%  Similarity=0.220  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCC-eEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754            5 GIARGRLTEERKAWRKNHPHG-FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (134)
                      ..+.+||++|+++|++++++| +++.+.+++ +.|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||
T Consensus        34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~-d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  112 (170)
T 2hlw_A           34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDE-DMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  112 (170)
T ss_dssp             CCHHHHHHHHHHHHHHCCGGGCEEEEESSTT-CSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence            458899999999999999888 667764432 124999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CCCceeeccCC--CCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           84 HPNVY-PSGTVCLSILN--EDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        84 HPnV~-~~G~vcl~~l~--~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ||||+ .+|+||+++|.  +     +|+|++ |++||++|+++|.++
T Consensus       113 HPNV~~~~G~ICl~iL~~~~-----~WsP~~ti~~vL~sI~~ll~~~  154 (170)
T 2hlw_A          113 MNGVNSSNGVVDPRAISVLA-----KWQNSYSIKVVLQELRRLMMSK  154 (170)
T ss_dssp             CSSBCSSSCBBCTTTCHHHH-----TCCSSCCHHHHHHHHHHHHHST
T ss_pred             cCCEeCCCCEEEhhhcCCCC-----CCCccCcHHHHHHHHHHHHccC
Confidence            99998 79999999997  5     799999 999999999999863

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=3.1e-39  Score=242.81  Aligned_cols=115  Identities=26%  Similarity=0.448  Sum_probs=108.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 032754            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~   77 (134)
                      ||  +.|.+||++|+++|+++   ++.|+++.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus        54 Ms--~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~d----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~  127 (253)
T 3e46_A           54 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR  127 (253)
T ss_dssp             CC--HHHHHHHHHHHHHHHHCHHHHTTSEEEEECST----TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCC----cccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeee
Confidence            56  78999999999999987   478999999876    9999999999999999999999999999999999999999


Q ss_pred             ecCCCccCCCC-CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           78 FPQGFFHPNVY-PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        78 f~t~i~HPnV~-~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |.|+||||||+ .+|+||+++|.+     +|+|++ |++||++|+++|.++
T Consensus       128 F~T~i~HPNV~~~~G~ICL~iL~~-----~WsP~~ti~~vL~sI~~ll~~p  173 (253)
T 3e46_A          128 FITKIWHPNISSVTGAICLDILKD-----QWAAAMTLRTVLLSLQALLAAA  173 (253)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT-----CCCTTCCHHHHHHHHHHHHHSC
T ss_pred             ecCCCccCCccCCCCeeecccccC-----CCCCCCCHHHHHHHHHHHhcCC
Confidence            99999999998 599999999987     899999 999999999998774

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=3.1e-39  Score=227.62  Aligned_cols=116  Identities=28%  Similarity=0.387  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHHHHHHHc-CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754            5 GIARGRLTEERKAWRKN-HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~-~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (134)
                      ..+.+||++|+++|+++ ++.|+++.+.+++ +.|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~-d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~   98 (156)
T 2q0v_A           20 VPRSFRLLDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE   98 (156)
T ss_dssp             CCHHHHHHHHHHHHHCC-CCTTEEEEESSTT-CTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCCeEEEECCCc-cccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence            46889999999999998 7889999886431 126999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCce---eeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           84 HPNVYPSGTV---CLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        84 HPnV~~~G~v---cl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      ||||+.+|+|   |+++|.+      |+|++ |++||++|+++|.++-
T Consensus        99 HPNV~~~G~icisCL~iL~~------WsP~~ti~~vL~sI~~ll~~Pn  140 (156)
T 2q0v_A           99 MSCVDNCGRVIKNNLHILKN------WNRNYTIETILISLRQEMLSSA  140 (156)
T ss_dssp             CTTBCTTSBBCGGGSHHHHT------CCTTCCHHHHHHHHHHHTTSTT
T ss_pred             cCCCccCCeEehhhcccccC------CCCcCcHHHHHHHHHHHHhCCC
Confidence            9999999999   8888874      99999 9999999999987753

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.7e-39  Score=228.17  Aligned_cols=111  Identities=25%  Similarity=0.457  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (134)
                      +.+.+||++|+++|  ++++|+++. +.++    |+++|+++| ||++|+|+||.|+++|.||++||++||+|+|.|++|
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~----~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   77 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDPD----DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY   77 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTT----CTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccCC----ccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCc
Confidence            56899999999999  678899988 4544    999999998 999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           84 HPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        84 HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      ||||+.+|+||+++|.+     +|+|++ |++||++|+++|.+|-
T Consensus        78 HPnv~~~G~iCl~iL~~-----~W~p~~~i~~vL~~i~~ll~~Pn  117 (160)
T 1y8x_A           78 HPNIDLEGNVCLNILRE-----DWKPVLTINSIIYGLQYLFLEPN  117 (160)
T ss_dssp             BTTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             cCcCCCCCeEEcccchh-----hccCCCCHHHHHHHHHHHHhCCC
Confidence            99999999999999987     799999 9999999999987743

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=2.3e-39  Score=227.93  Aligned_cols=112  Identities=26%  Similarity=0.471  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      |.+||++|+++|+++++.|+.+.+.+++   |+++|+++|. |++|+|+||.|+++|.||++||++||+|+|.|++||||
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~---~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEA---NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN   78 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCS---SSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCC---chheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence            6799999999999999999987654443   9999999998 99999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |+.+|+||+++|..+    +|+|++ |++||++|+++|..+
T Consensus        79 v~~~G~iCl~iL~~~----~W~p~~~i~~vl~~i~~ll~~p  115 (154)
T 1c4z_D           79 IDEKGQVCLPVISAE----NWKPATKTDQVIQSLIALVNDP  115 (154)
T ss_dssp             BCTTCBBCCTTTSSS----SCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEECCCCCCC----CCCCCCcHHHHHHHHHHHHcCC
Confidence            999999999999732    799999 999999999998764

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.8e-39  Score=230.63  Aligned_cols=111  Identities=24%  Similarity=0.424  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (134)
                      +.+.+||++|+++|  ++++|+++. +.++    |+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        25 ~~~~~RL~kEl~~l--~~~~~i~~~~p~~~----nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~   97 (180)
T 2nvu_C           25 SAAQLRIQKDINEL--NLPKTCDISFSDPD----DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY   97 (180)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTT----CTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEecccc----cccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCc
Confidence            67899999999999  678899998 4544    999999999 999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           84 HPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        84 HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      ||||+.+|+||+++|.+     +|+|++ |++||++|+++|.+|-
T Consensus        98 HPNV~~~G~iCl~iL~~-----~W~p~~~i~~vL~si~~ll~~Pn  137 (180)
T 2nvu_C           98 HPNIDLEGNVALNILRE-----DWKPVLTINSIIYGLQYLFLEPN  137 (180)
T ss_dssp             BTTBCTTSBBCCGGGTT-----SCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             cCCCCCCCcEEcccccc-----cCCCCCCHHHHHHHHHHHHhCCC
Confidence            99999999999999987     799999 9999999999987743

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=6.7e-39  Score=228.30  Aligned_cols=113  Identities=19%  Similarity=0.334  Sum_probs=103.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHcC------------CCCeEEeecCCCCCCCcceEEEEEcCCCCCCCC--CCEEEEEEEcC
Q 032754            1 MSGGGIARGRLTEERKAWRKNH------------PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWE--GGYFPLTLYFS   66 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~------------~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~--gg~f~~~i~fp   66 (134)
                      ||  +.+.|||++|+++|++++            +.++.+.+.++    |+++|+++|.||++|+|+  ||.|+++|.||
T Consensus         5 Ms--~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~----nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp   78 (167)
T 4ds2_A            5 MK--NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTD----TIYNWILKVKAPADSVYGGAGNTYQLSVLFS   78 (167)
T ss_dssp             CC--CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEES----STTEEEEEEECCTTSGGGTTCCEEEEEEECC
T ss_pred             cc--HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCC----cccEEEEEEECCCCCCccCCCCEEEEEEECC
Confidence            77  788999999999999987            77889888776    999999999999999999  99999999999


Q ss_pred             CCCCCCCCeeeecCCCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHH-HHHHhhC
Q 032754           67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMY-GSGLAKI  124 (134)
Q Consensus        67 ~~YP~~pP~v~f~t~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~-~i~~~l~  124 (134)
                      ++||++||+|+|.|++|||||+.+|+||+++|.+     +|+|++ ++++|+ .|++++.
T Consensus        79 ~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~-----~W~p~~~i~~vll~~l~~l~~  133 (167)
T 4ds2_A           79 DDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND-----FWTPDQHASDVIKLVLDRVFS  133 (167)
T ss_dssp             TTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHT-----TCCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCEEEEeCCcccccCCCCCEEEcccCcC-----CCCCCCChHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999987     899999 999765 4555554

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.9e-39  Score=230.99  Aligned_cols=113  Identities=24%  Similarity=0.364  Sum_probs=101.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ||+.+.+.+||++|+++|++   .|+++.+. +    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-d----dl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t   91 (179)
T 2z5d_A           20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-G----GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMN   91 (179)
T ss_dssp             ---CCHHHHHHHHHHHHHHH---SSSCEEEE-E----ETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CCCchHHHHHHHHHHHhcCc---CCCEEEEC-C----CCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEec
Confidence            55334689999999999985   47888776 3    7899999999999999999999999999999999999999999


Q ss_pred             CCccCCCCC-CCceeeccCCCCCCCCCCChHH-HHHHHHH-HHHhhCCC
Q 032754           81 GFFHPNVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYG-SGLAKISS  126 (134)
Q Consensus        81 ~i~HPnV~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~-i~~~l~~~  126 (134)
                      +||||||+. +|+||+++|.+     +|+|++ |++||++ |+++|..|
T Consensus        92 ~i~HPNV~~~~G~ICL~iL~~-----~WsP~~ti~~iL~s~I~~Ll~~P  135 (179)
T 2z5d_A           92 KIFHPNIDEASGTVCLDVINQ-----TWTALYDLTNIFESFLPQLLAYP  135 (179)
T ss_dssp             CCCBTTBCTTTCBBCHHHHHH-----HCCTTCCTTHHHHTHHHHHHHSC
T ss_pred             CCccCcCCCCCCeEecccccc-----CCCCCCCHHHHHHHHHHHHHhCC
Confidence            999999998 99999999986     799999 9999999 99988764

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=5.4e-39  Score=225.64  Aligned_cols=109  Identities=21%  Similarity=0.378  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   85 (134)
                      .|.+||++|+++|+++   |+.+.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         2 sa~~Rl~kEl~~l~~~---~~~v~~~~~----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   74 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA---GYDLELNNG----STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHP   74 (152)
T ss_dssp             -CCCHHHHTHHHHHHH---TCCEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             hHHHHHHHHHHhcCcC---CCEEEEccC----ccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccC
Confidence            4679999999999875   678888765    999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCCceeeccCCCCCCCCCCChHH-HHHHHHH-HHHhhCCC
Q 032754           86 NVY-PSGTVCLSILNEDNVSSSCRFVI-YFQIMYG-SGLAKISS  126 (134)
Q Consensus        86 nV~-~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~-i~~~l~~~  126 (134)
                      ||+ .+|+||+++|.+     +|+|++ |++||++ |+++|..|
T Consensus        75 ni~~~~G~iCl~il~~-----~W~p~~~i~~vl~~ii~~Ll~~P  113 (152)
T 2onu_A           75 NVDEASGSVCLDVINQ-----TWTPLYSLVNVFEVFLPQLLTYP  113 (152)
T ss_dssp             TBCTTTCBBCHHHHHH-----HCCTTCCHHHHHHTHHHHHHHSC
T ss_pred             cCcCcCCeEecccccc-----cCCCCCCHHHHHHHHHHHHHhCC
Confidence            998 599999999987     799999 9999999 57777653

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=1.2e-38  Score=230.33  Aligned_cols=117  Identities=14%  Similarity=0.259  Sum_probs=108.2

Q ss_pred             hHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCcceEEEEEcCC-CCCCCCC-----------CEEEEEEEcCCCC
Q 032754            5 GIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGK-TGTDWEG-----------GYFPLTLYFSEDY   69 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~gp-~~t~y~g-----------g~f~~~i~fp~~Y   69 (134)
                      ..+.+||++|+++|++++   +.++++.+.++    |+++|+++|.|| ++|+|+|           |.|+++|.||++|
T Consensus        26 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~d----nl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~Y  101 (186)
T 1zuo_A           26 VQASDRLMKELRDIYRSQSYKTGIYSVELIND----SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNF  101 (186)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHTTSEEEEEETT----EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCC----ccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCC
Confidence            789999999999999988   68899988875    999999999998 8999998           8999999999999


Q ss_pred             CCCCCeeeecCCCccC-CCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcch
Q 032754           70 PSKPPKCKFPQGFFHP-NVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLDD  129 (134)
Q Consensus        70 P~~pP~v~f~t~i~HP-nV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~d  129 (134)
                      |++||+|+|.|++||| ||+.+|+||+++|..+    +|+|++ |++||++|+++|.+++.+
T Consensus       102 P~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~----~WsP~~ti~~VL~sI~slL~~p~a~  159 (186)
T 1zuo_A          102 PFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ----GWSSAYSIESVIMQINATLVKGKAR  159 (186)
T ss_dssp             TSSCCEEEEEESCEESTTBCGGGBBCCGGGSTT----TCCTTSCHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCCeEEEeCCccCCCccCCCCcEEeccCCCC----CCCCcCcHHHHHHHHHHHHcCCChh
Confidence            9999999999999999 6999999999999743    799999 999999999999876543

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=2.2e-37  Score=246.02  Aligned_cols=113  Identities=27%  Similarity=0.527  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.|.|||++|+++|++++++|+++.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVGD----DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   77 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEETT----EEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCC----cceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccc
Confidence            67899999999999999999999999876    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|.+     +|+|++ |++||++|+++|..|
T Consensus        78 Pnv~~~G~iCl~il~~-----~W~p~~~i~~vL~~i~~ll~~p  115 (399)
T 4ddg_A           78 PNINSNGSISLDILRS-----QWSPALTISKVLLSICSLLCDP  115 (399)
T ss_dssp             TTBCTTCBBCCGGGTT-----SCCTTCCHHHHHHHHHHHHHSC
T ss_pred             cccCCCCeEeCccccc-----CCCccccHHHHHHHHHHHHcCC
Confidence            9999999999999987     899999 999999999998874

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6e-37  Score=221.67  Aligned_cols=114  Identities=23%  Similarity=0.356  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.+||++|+++|++++++||.+.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+  |
T Consensus        13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~   86 (187)
T 2f4w_A           13 TTATQRLKQDYLRIKKDPVPYICAEPLPS----NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--N   86 (187)
T ss_dssp             -CHHHHHHHHHHHHHHSCCTTEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--C
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCC----ccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--C
Confidence            45889999999999999999999988865    99999999999999999999999999999999999999999999  9


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|..+  .++|+|++ |.+||++|+++|..+
T Consensus        87 ~~~~~~G~ICL~iL~~~--~~~W~P~~ti~~vL~si~sll~~p  127 (187)
T 2f4w_A           87 GRFKCNTRLCLSITDFH--PDTWNPAWSVSTILTGLLSFMVEK  127 (187)
T ss_dssp             SSBCTTSCBC------------CCTTCCHHHHHHHHHHHHHSC
T ss_pred             ceeccCCeEeeeccccC--ccCCCCcCcHHHHHHHHHHHhcCC
Confidence            99999999999999521  01799999 999999999998764

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=4.4e-37  Score=222.85  Aligned_cols=110  Identities=27%  Similarity=0.420  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEe----ecCCCCCCCcc---eEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAK----PETKDGSVNLM---IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~----~~~~~~~~~~~---~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~   77 (134)
                      +.|.+||++|+++|+  +++|+++.    +.++    |++   +|+++|. |++|||+||.|+++|.||++||++||+|+
T Consensus        28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~----nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~  100 (190)
T 3o2u_A           28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDSA----DRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV  100 (190)
T ss_dssp             CHHHHHHHHHHHTCC--CCTTEEEEEEECTTCC----CTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred             cHHHHHHHHHHHhcc--CCCCEEEEecCCCCCc----cCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence            678999999999998  77899987    4444    999   9999998 78899999999999999999999999999


Q ss_pred             ecCCCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           78 FPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        78 f~t~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |.|+||||||+.+|+||+++|.+     +|+|++ |++||++|+++|.+|
T Consensus       101 f~t~i~HPnV~~~G~iCl~iL~~-----~W~p~~~i~~vL~~i~~ll~~p  145 (190)
T 3o2u_A          101 CLKKIFHPNIDLKGNVCLNILRE-----DWSPALDLQSIITGLLFLFLEP  145 (190)
T ss_dssp             ECSCCCCTTBCTTSBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             EecCcccCCCCCCCeEechhccC-----CCCCCCCHHHHHHHHHHHHhCC
Confidence            99999999999999999999987     899999 999999999998774

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=9.4e-38  Score=223.04  Aligned_cols=108  Identities=22%  Similarity=0.293  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   85 (134)
                      .+.+||++|+++|++++. ++   ..++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~~~----~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HP   83 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YPSD----TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHP   83 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EECS----STTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CCCC----CceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccc
Confidence            567999999999998873 33   2333    999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCCceeeccCCCCCCCCCCChHH-HHHHHHHH-HHhhCCC
Q 032754           86 NVY-PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGS-GLAKISS  126 (134)
Q Consensus        86 nV~-~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i-~~~l~~~  126 (134)
                      ||+ .+|+||+++|.+     +|+|++ |++||++| +++|..+
T Consensus        84 Ni~~~~G~iCl~iL~~-----~W~p~~~i~~vL~sil~~ll~~P  122 (171)
T 1yf9_A           84 NVDERSGSVCLDVINQ-----TWTPMYQLENIFDVFLPQLLRYP  122 (171)
T ss_dssp             TBCTTTCBBCHHHHHH-----HCCTTCCTHHHHHTHHHHHHHSC
T ss_pred             cCcccCCeEecccccc-----CCCCCCcHHHHHHHHHHHHHhCC
Confidence            999 599999999987     799999 99999998 6777653

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=5.4e-36  Score=231.16  Aligned_cols=116  Identities=28%  Similarity=0.498  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCe----EEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            5 GIARGRLTEERKAWRKNHPHGF----VAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~----~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      +.+.+||++|+++|++++++|+    .+.+.++    |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        75 ~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ed----nl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T  150 (323)
T 3ceg_A           75 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEE----RLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET  150 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESS----CTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcccceeecccCC----CccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence            6899999999999999988754    4455554    9999999999999999999999999999999999999999999


Q ss_pred             C-----CccCCCCCCCceeeccCCCCCC--CCCCChHH--HHHHHHHHHHhhC
Q 032754           81 G-----FFHPNVYPSGTVCLSILNEDNV--SSSCRFVI--YFQIMYGSGLAKI  124 (134)
Q Consensus        81 ~-----i~HPnV~~~G~vcl~~l~~~~~--~~~W~p~~--i~~vl~~i~~~l~  124 (134)
                      +     ||||||+.+|+||+++|..+..  .++|+|++  |++||++|+++|.
T Consensus       151 ~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~  203 (323)
T 3ceg_A          151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLIL  203 (323)
T ss_dssp             STTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTS
T ss_pred             cCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHc
Confidence            8     9999999999999999984321  12799997  9999999999986

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.95  E-value=8.2e-30  Score=178.92  Aligned_cols=96  Identities=21%  Similarity=0.319  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeee
Q 032754            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPKCK   77 (134)
Q Consensus         8 ~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~v~   77 (134)
                      .+||++|+++|++.      +.+..+    |++.|.+.+.||+||+|+||          .|+++|.||.+||++||+|+
T Consensus        34 ~~RL~eE~k~L~k~------v~p~k~----n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~  103 (172)
T 2z6o_A           34 VQRLKEEYQSLIRY------VENNKN----ADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA  103 (172)
T ss_dssp             HHHHHHHHHHHHHH------HHHHHH----TTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred             HHHHHHHHHHHHHH------hccCcc----ccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence            89999999999983      445444    89999999999999999999          99999999999999999999


Q ss_pred             ecCC-CccCCCCCCCceeeccCCCC--CCCCCCChHH-HHHHH
Q 032754           78 FPQG-FFHPNVYPSGTVCLSILNED--NVSSSCRFVI-YFQIM  116 (134)
Q Consensus        78 f~t~-i~HPnV~~~G~vcl~~l~~~--~~~~~W~p~~-i~~vl  116 (134)
                      |.++ +||||||.+|+|||++|...  .   .|+|.+ |..+|
T Consensus       104 F~~~~~~hpnmY~~G~ICLdIL~kp~Ws---~~~P~~~IahiL  143 (172)
T 2z6o_A          104 VPELDGKTAKMYRGGKICLTDHFKPLWA---RNVPKFGLAHLM  143 (172)
T ss_dssp             CGGGTTTCSSBCTTSBBCCCTTHHHHHH---HHTTSCCHHHHH
T ss_pred             eCCCCCCCCCCCCCCcEechhhcccccc---ccCCccCHHHHH
Confidence            9998 99999999999999999441  1   355999 99987

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.79  E-value=3.1e-19  Score=125.81  Aligned_cols=112  Identities=15%  Similarity=0.121  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHcCC---CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE---EEEEEEcCCCCCCCCCeeeecC-
Q 032754            8 RGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY---FPLTLYFSEDYPSKPPKCKFPQ-   80 (134)
Q Consensus         8 ~kRl~~El~~l~~~~~---~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~---f~~~i~fp~~YP~~pP~v~f~t-   80 (134)
                      .+|..+|+.++.+.-+   +...+...++    ...++-+.+.|.-.++|+|+.   |.+.|-||.+||++||.|.|.+ 
T Consensus        30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~d----G~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~  105 (162)
T 3r3q_A           30 GRTTFHDSLALLDNFHSLRPRTRVFTHSD----GTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLE  105 (162)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTT----SCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGG
T ss_pred             hhHHHHHHHHHHHhCCCCceeeeeEEcCC----CChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECC
Confidence            3677788888876432   2222334443    556666777777778999998   8899999999999999998865 


Q ss_pred             ------C---Cc-cCCCCCCCceeeccCCCCCCCCCCCh-HH-HHHHHHHHHHhhCCCcch
Q 032754           81 ------G---FF-HPNVYPSGTVCLSILNEDNVSSSCRF-VI-YFQIMYGSGLAKISSLDD  129 (134)
Q Consensus        81 ------~---i~-HPnV~~~G~vcl~~l~~~~~~~~W~p-~~-i~~vl~~i~~~l~~~~~d  129 (134)
                            +   |+ ||||+.+|+||+++|.      +|+| +. +.++|.+|+++|..|.-|
T Consensus       106 t~~m~~~~~~I~~hpnVD~~G~I~lpyL~------~W~p~~s~L~~ll~~l~~lf~ep~~d  160 (162)
T 3r3q_A          106 NFDMNTISSSLPIQEYIDSNGWIALPILH------AWDPAAMNLIMVVQELMSLLHEPPQD  160 (162)
T ss_dssp             GCCTTTSCTTSTHHHHBCTTSBBCCGGGG------SCCGGGCCHHHHHHHHHHTTSCCCCC
T ss_pred             CccccccccccCCCCCCCCCCcEeCcccc------cCCCCcCcHHHHHHHHHHHhcCCCCC
Confidence                  1   77 9999999999999995      4999 56 999999999998887655

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.78  E-value=3.3e-20  Score=127.74  Aligned_cols=87  Identities=21%  Similarity=0.361  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCC----------EEEEEEEcCCCCCCCCCee
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPKC   76 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~v   76 (134)
                      -..||..|++.|-+      ++....+    +-..|...+.||+||+|+|+          .|+++|+||.+||..||+|
T Consensus        35 w~~RlkeEy~alI~------yv~~nK~----~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI  104 (168)
T 3kpa_A           35 WTARLKEEYASLIT------YVEHNKA----SDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEI  104 (168)
T ss_dssp             HHHHHHHHHHHHHH------HHHHHHH----TTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred             HHHHHHHHHHHHHH------HHHhccc----ccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEe
Confidence            57899999999976      2222222    44569999999999999999          8999999999999999999


Q ss_pred             eecCC-CccCCCCCCCceeeccCCCCCCCCCCChHH
Q 032754           77 KFPQG-FFHPNVYPSGTVCLSILNEDNVSSSCRFVI  111 (134)
Q Consensus        77 ~f~t~-i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~  111 (134)
                      +|.+. .+|||+|.+|+|||+++        |+|.+
T Consensus       105 ~Fp~ldgkt~kmYr~GkICLdIh--------wkPlW  132 (168)
T 3kpa_A          105 ALPELEGKTVKMYRGGKICMTTH--------FFPLW  132 (168)
T ss_dssp             BCGGGTTTCSSEETTTEECCCTT--------HHHHH
T ss_pred             ecccccCcCccccCCCcEEeccc--------cchhh
Confidence            99994 89999999999999873        77776

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.55  E-value=1.7e-14  Score=99.97  Aligned_cols=103  Identities=20%  Similarity=0.266  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHcCCC-CeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEE--EEEcCCCCCCCCCeeeecCC------
Q 032754           11 LTEERKAWRKNHPH-GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL--TLYFSEDYPSKPPKCKFPQG------   81 (134)
Q Consensus        11 l~~El~~l~~~~~~-~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~--~i~fp~~YP~~pP~v~f~t~------   81 (134)
                      ..+|+..+.++=+. ......-. ....++..|..+|.    .+|+|+.|.+  .|-||.+||++||.| |.++      
T Consensus        25 t~~dv~~vl~~yp~L~p~~~~y~-G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I   98 (146)
T 3obq_A           25 TVRETVNVITLYKDLKPVLDSYG-TGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTI   98 (146)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEESS-STTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEE
T ss_pred             hHHHHHHHHHhCCCCceEeeeee-CChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEE
Confidence            34577766654221 11121122 33458999999998    5899999985  889999999999999 6655      


Q ss_pred             CccCCCCCCCceeeccCCCCCCCCCCCh-HH-HHHHHHHHHHhhCC
Q 032754           82 FFHPNVYPSGTVCLSILNEDNVSSSCRF-VI-YFQIMYGSGLAKIS  125 (134)
Q Consensus        82 i~HPnV~~~G~vcl~~l~~~~~~~~W~p-~~-i~~vl~~i~~~l~~  125 (134)
                      .+||||+.+|+||+..|.+      |++ .. +.+++..++.++..
T Consensus        99 ~~~~~Vd~~G~i~lpyL~~------W~~~~snL~~ll~~l~~~F~~  138 (146)
T 3obq_A           99 KTGKHVDANGKIYLPYLHE------WKHPQSDLLGLIQVMIVVFGD  138 (146)
T ss_dssp             CCBTTBCTTCBBCCHHHHT------CCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEecccccc------cCCCCCCHHHHHHHHHHHHhh
Confidence            5899999999999999964      988 55 99999999887654

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.27  E-value=0.043  Score=36.06  Aligned_cols=67  Identities=19%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         8 ~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ..+...|+..|..==+..+.+  ..+    ....+.+.+..-.+..-+.-.+.+.|.+|++||..||.+...+
T Consensus        12 ~e~q~~EleaL~sIy~d~~~~--~~~----~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           12 GEEQRNELEALESIYPDSFTV--LSE----NPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEE--CCS----SSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHccCceEE--ccC----CCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            456677888887533333432  221    3456666666322222233478899999999999999998754

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=95.16  E-value=0.21  Score=32.63  Aligned_cols=70  Identities=14%  Similarity=0.083  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCC--CCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDW--EGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y--~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      .+...|+..|..==+..+.......  ..+...+.+.+..+.+..-  ..-.+.+.|.+|++||..+|.|...+
T Consensus        11 e~~~~EleaL~SIY~de~~~~~~~~--~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           11 WVLPSEVEVLESIYLDELQVIKGNG--RTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECCTT--SSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceEEecCCC--CCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            3567788877753333444322111  0134556666753322111  12478899999999999999998775

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=95.03  E-value=0.26  Score=32.63  Aligned_cols=41  Identities=17%  Similarity=0.306  Sum_probs=29.7

Q ss_pred             cceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754           39 LMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus        39 ~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ...+.+.+....+ .-..-.+.+.|.+|.+||..||.|.+.+
T Consensus        45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            4567777774322 1123478899999999999999998865

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.60  E-value=0.11  Score=34.13  Aligned_cols=68  Identities=12%  Similarity=0.080  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHc-CC-CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            9 GRLTEERKAWRKN-HP-HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         9 kRl~~El~~l~~~-~~-~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      .+...|+..|..= .. ..+.+.-...   .+...+.+.+.... ..-..-.+.+.|.+|.+||..||.|...+
T Consensus        10 e~q~~EleaL~SIy~d~~e~~~~~~~~---~~~~~f~i~l~~~~-~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           10 EPVQEELSVLAAIFCRPHEWEVLSRSE---TDGTVFRIHTKAEG-FMDADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHHHCCTTTCCCSEECS---SSCEEEEEEEECCT-TTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCceEEecCCC---CCCCeEEEEecCCC-CCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            3456677777642 11 1222211111   13457777776332 11112478899999999999999987653

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=94.21  E-value=0.25  Score=35.02  Aligned_cols=82  Identities=17%  Similarity=0.125  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   88 (134)
                      ++|.+|+.++-=+.    -+.. +.    ++...++.+...     .|....++|.++.+||.++|.+..--+.  |.  
T Consensus         4 ~~li~Ei~~iGW~~----l~~i-d~----~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~--   65 (186)
T 3zqs_A            4 SSLIEEIGTLGWDK----LVYA-DT----CFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF--   65 (186)
T ss_dssp             CSHHHHHHHHCGGG----EEEE-CT----TSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC--
T ss_pred             HHHHHHHHHhCCce----eeee-cC----CccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc--
Confidence            36788888872221    1222 22    788888888733     3778899999999999999987654432  11  


Q ss_pred             CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhh
Q 032754           89 PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAK  123 (134)
Q Consensus        89 ~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l  123 (134)
                           .     .     .|+|.. +..++.+.+.++
T Consensus        66 -----~-----~-----~w~~~ssL~~v~~qF~~~L   86 (186)
T 3zqs_A           66 -----C-----A-----SWTPQSSLISIYSQFLAAI   86 (186)
T ss_dssp             -----C-----C-----CCCTTCCHHHHHHHHHHHH
T ss_pred             -----c-----c-----ccCCCccHHHHHHHHHHHH
Confidence                 1     1     588888 888887776554

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=92.23  E-value=0.8  Score=31.06  Aligned_cols=23  Identities=13%  Similarity=0.077  Sum_probs=21.1

Q ss_pred             EEEEEEEcCCCCCCCCCeeeecC
Q 032754           58 YFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus        58 ~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      .+.+.|.+|.+||..+|.|...+
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~   98 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEEC
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEe
Confidence            78999999999999999998766

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=91.79  E-value=0.1  Score=34.54  Aligned_cols=72  Identities=14%  Similarity=0.084  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCC-CCCcceEEEEEcCCCC-C-CCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            8 RGRLTEERKAWRKNHPHGFVAKPETKDG-SVNLMIWECIIPGKTG-T-DWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         8 ~kRl~~El~~l~~~~~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~-t-~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ..+...|+..|..==+..+......... ......+.+.+. +.+ . .-..-.+.+.|.||++||..+|.|...+
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            4456677777765323333321110000 001345667776 222 1 0012468899999999999999998743

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=90.74  E-value=0.2  Score=33.91  Aligned_cols=24  Identities=21%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             EEEEEEEcCCCCCCCCCeeeecCC
Q 032754           58 YFPLTLYFSEDYPSKPPKCKFPQG   81 (134)
Q Consensus        58 ~f~~~i~fp~~YP~~pP~v~f~t~   81 (134)
                      .+.+.|.+|.+||..||.|.....
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            688999999999999999987763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	1e-26
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	8e-22
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	2e-21
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	7e-21
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	7e-21
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-20
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-20
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	3e-20
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	2e-19
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	1e-18
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	3e-18
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	1e-17
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-17
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	3e-17
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	4e-17
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	1e-16
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	1e-16
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	9e-16
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-15
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	3e-15
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	3e-15
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	2e-14
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	4e-14
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	1e-13
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-13
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	3e-13
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	1e-12
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	3e-12
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	4e-11
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	1e-10

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 1e-26
 Identities = 67/107 (62%), Positives = 75/107 (70%), Gaps = 1/107 (0%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct: 1   GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 60

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFV 110
            F +DYPS PPKCKF    FHPNVYPSGTV LSIL ED        +
Sbjct: 61  LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITI 107

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 82.9 bits (204), Expect = 8e-22
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            L ++    R+    GF A     +   ++  WE ++ G   T +EGG+F   L F  DY
Sbjct: 4   LLKKQLADMRRVPVDGFSAGLVDDN---DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 60

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
           P KPPK KF    +HPN+   G VC+SIL++ 
Sbjct: 61  PQKPPKMKFISEIWHPNIDKEGNVCISILHDP 92

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 81.4 bits (200), Expect = 2e-21
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 4/111 (3%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E +   ++ P    A P       +L  W+  I G   + ++GG F LT++F
Sbjct: 1   MALKRIQKELQDLGRDPPAQCSAGPVGD----DLFHWQATIMGPPESPYQGGVFFLTIHF 56

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIM 116
             DYP KPPK  F    +HPN+  +G++CL IL      +     +   I 
Sbjct: 57  PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSIC 107

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 7e-21
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
            + RL +E  A + + P G     ++     ++  W   + G  GT +EG  F L   FS
Sbjct: 4   MQKRLQKELLALQNDPPPGMTLNEKSVQN--SITQWIVDMEGAPGTLYEGEKFQLLFKFS 61

Query: 67  EDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILNED 101
             YP   P+  F       HP+VY +G +CLSIL ED
Sbjct: 62  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED 98

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 80.6 bits (198), Expect = 7e-21
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 3/96 (3%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
            A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F   L F
Sbjct: 3   TAQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEF 59

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
            +DYP  PPK  F     HPN+YP+G VC+SIL+  
Sbjct: 60  PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSP 95

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 79.4 bits (195), Expect = 2e-20
 Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F 
Sbjct: 4   ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFD 59

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSS 106
           E+YP+KPP  KF    FHPNVY +G +CL IL      + 
Sbjct: 60  EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTY 99

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 78.2 bits (192), Expect = 2e-20
 Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            L  +     KN   GF A     +   +L  WE +I G   T +EGG F   L F +DY
Sbjct: 3   LLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDY 59

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
           P +PPK KF    +HPNV  +G VC+SIL+E
Sbjct: 60  PLRPPKMKFITEIWHPNVDKNGDVCISILHE 90

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 3e-20
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +  R+ +E      + P    A P+      N+  W   I G  G+ +EGG F L + FS
Sbjct: 3   SAKRIQKELAEITLDPPPNCSAGPKGD----NIYEWRSTILGPPGSVYEGGVFFLDITFS 58

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMY 117
            DYP KPPK  F    +H N+   G +CL IL ++   +     +   I  
Sbjct: 59  PDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICS 109

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 2e-19
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL EE +  +K    G V+     D  + L  W  +I G   T +E   + L +     Y
Sbjct: 9   RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 68

Query: 70  PSKPPKCKFPQGFFHPNVYPSG----TVCLSILNEDNVSSSCRFVI 111
           P  PP  +F        V  S        +S+L +   S S + V+
Sbjct: 69  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVL 114

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 74.4 bits (182), Expect = 1e-18
 Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E +    +   G  A P+      NL  W   + G   T +E   + LTL F  DY
Sbjct: 13  RLQQELRTLLMSGDPGITAFPDGD----NLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNED-NVSSSCRFVI 111
           P KPP  KF    +HPNV  SG +CL IL E+   S   R ++
Sbjct: 69  PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTIL 111

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 3e-18
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G+ R R+ +E +        G  A+P+      N   +  +I G   + +EGG F L L+
Sbjct: 2   GLPR-RIIKETQRLLAEPVPGIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELF 56

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCR 108
             E+YP   PK +F    +HPNV   G +CL IL +    +   
Sbjct: 57  LPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 100

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 71.7 bits (175), Expect = 1e-17
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +R RL  + K  +++ P G    P       N++ WE II G   T +E G F L+L F+
Sbjct: 4   SRRRLMRDFKKLQEDPPAGVSGAPTED----NILTWEAIIFGPQETPFEDGTFKLSLEFT 59

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-DNVSSSCRFVIYF 113
           E+YP+KPP  KF    FHPNVY  G++CL IL    + +     ++  
Sbjct: 60  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTS 107

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 71.3 bits (174), Expect = 2e-17
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQI 115
           P + PK +F    +HPN+   G +CL +L  +   +     +   I
Sbjct: 63  PMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSI 108

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 70.5 bits (172), Expect = 3e-17
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 1/98 (1%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL EE +   K       +        + +  W   I G   ++ E   + L++    +Y
Sbjct: 8   RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 67

Query: 70  PSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNVSSS 106
           P  PPK  F      P V P +G V        +   +
Sbjct: 68  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRA 105

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 4e-17
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E      +   G  A PE+     NL  W   I G  GT +E   + L+L F   Y
Sbjct: 5   RLQQELMTLMMSGDKGISAFPESD----NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 60

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSS 105
           P   P  KF    +HPNV   G + L IL E   + 
Sbjct: 61  PYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSAL 96

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 68.6 bits (167), Expect = 1e-16
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E   +  N P              N+ IW     G   T +    + L + F +DY
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHPN----NIRIWIVKYVGLENTIYANEVYKLKIIFPDDY 57

Query: 70  PSKPPKCKFPQ-GFFHPNVYPSGTVCLSILNED 101
           P KPP   F Q    H +VY +G +CLS+L +D
Sbjct: 58  PLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDD 90

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 1e-16
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E +  +K  P              N+++W  ++       +    F L + F 
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLSSDDA---NVLVWHALL-LPDQPPYHLKAFNLRISFP 56

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQIMY 117
            +YP KPP  KF    +HPNV  +G +CL I++ +N     +     + + 
Sbjct: 57  PEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALN 107

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 9e-16
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E +  RK     F      +    NL+ W+ +I       ++ G F + + F  +Y
Sbjct: 3   RLMKELEEIRKCGMKNFRNIQVDEA---NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 58

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSC 107
           P KPPK  F    +HPN+   G VCL +++ +N   + 
Sbjct: 59  PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPAT 96

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 66.7 bits (162), Expect = 1e-15
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +A + +       +  ++    ++   +    G  GT +EGG F + +    +Y
Sbjct: 5   RIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSC 107
           P KPPK +F    +HPN+          + ++  S   
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVI 99

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.0 bits (160), Expect = 3e-15
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           M+   IA  R+  E K   K+                N       I G   T +EGG + 
Sbjct: 1   MAN--IAVQRIKREFKEVLKSEETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQ 57

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNVSSSCRFVIYFQI 115
           L +   E YP  PPK +F    +HPN+   +G +CL IL +   ++     +   +
Sbjct: 58  LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSL 113

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 3e-15
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 5  GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
          G A   L  +    ++N+  G  AKP ++    ++M WE  I G   + W+G  F LT++
Sbjct: 3  GRAYLLLHRDFCDLKENNYKGITAKPVSE----DMMEWEVEIEGLQNSVWQGLVFQLTIH 58

Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVC 94
          F+ +Y   PP  KF    FHPNV P     
Sbjct: 59 FTSEYNYAPPVVKFITIPFHPNVDPHTGQP 88

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 63.7 bits (154), Expect = 2e-14
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R  +   A   +  HG  A+        ++  W   I G  GT +EGG+F L +    DY
Sbjct: 18  RAHDSEPAATHSTSHGVSAQIVGG----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 73

Query: 70  PSKPPKCKFPQGFFHPN-VYPSGTVCLSILNEDNVSSSCRFVIYFQI 115
           P  PPK KF    +HPN    +G +CL IL  +   +         I
Sbjct: 74  PYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSI 120

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 4e-14
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
          RL  E        P G     +       +      I G   T +E G F L +   E Y
Sbjct: 6  RLKRELHMLATEPPPGITCWQDKD----QMDDLRAQILGGANTPYEKGVFKLEVIIPERY 61

Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
          P +PP+ +F    +HPN+  +G +CL +L 
Sbjct: 62 PFEPPQIRFLTPIYHPNIDSAGRICLDVLK 91

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 1e-13
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL ++    +K+      A+P       N++ W  ++ G   T +EGGY+   L F 
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEPLPS----NILEWHYVVRGPEMTPYEGGYYHGKLIFP 57

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
            ++P KPP               +  +CLSI +   
Sbjct: 58  REFPFKPPSIYMITPNGRFKC--NTRLCLSITDFHP 91

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 1e-13
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A+ R+ ++                       +L+ ++ +I       ++ G F  +    
Sbjct: 4   AQLRIQKDINELNLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKVG 57

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYFQI 115
           + YP  PPK K     +HPN+   G VCL+IL ED         I + +
Sbjct: 58  QGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGL 106

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 3e-13
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 38  NLMIWECIIPGKTGTDWEGGYF--PLTLYFSEDYPSKPPKCKF-PQGF----FHPNVYPS 90
                   + G     + G  +  P+ L+  + YP  PP C   P          +V  +
Sbjct: 45  GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDAN 104

Query: 91  GTVCLSILNEDNVSSS 106
           G + L  L+E     S
Sbjct: 105 GKIYLPYLHEWKHPQS 120

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 1e-12
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            + +E      + P G    P  +    +L   +  I G  GT + GG F + L   +D+
Sbjct: 10  LVYKEVTTLTADPPDGIKVFPNEE----DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 65

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNED-NVSSSCRFVIYF 113
           P+ PPK  F    FHPNV  +G +C+++L  D       R V+  
Sbjct: 66  PASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLT 110

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 55.1 bits (132), Expect = 4e-11
 Identities = 17/82 (20%), Positives = 26/82 (31%)

Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
            +  +     G  GT +E G + L +    DYP K P   F     HPNV          
Sbjct: 24  TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLD 83

Query: 98  LNEDNVSSSCRFVIYFQIMYGS 119
           +     +   +    F +    
Sbjct: 84  VINQTWTPMYQLENIFDVFLPQ 105

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (129), Expect = 1e-10
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 17/87 (19%)

Query: 34  DGSVNLMIWECIIPGKTGTDWEGG---YFPLTLYFSEDYPSKPPKCKFPQGF-------- 82
           DG+  L++    I G   T  +G      P+ ++    YP KPP                
Sbjct: 49  DGTPQLLL---SIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISS 105

Query: 83  ---FHPNVYPSGTVCLSILNEDNVSSS 106
                  +  +G + L IL+  + ++ 
Sbjct: 106 SLPIQEYIDSNGWIALPILHCWDPAAM 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.85
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.81
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	97.82
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	96.29
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	91.4
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	91.27
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	89.89

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-42  Score=231.00  Aligned_cols=114  Identities=28%  Similarity=0.469  Sum_probs=104.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ||  + +.|||++|+++|++++++|+++.+...+  +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|
T Consensus         1 m~--~-~~kRL~kEl~~l~~~~~~~~~~~~~~~~--~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t   75 (117)
T d2a7la1           1 MA--S-MQKRLQKELLALQNDPPPGMTLNEKSVQ--NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTG   75 (117)
T ss_dssp             GT--T-SCHHHHHHHHHHHHSCCTTCCCCTTCCC--CSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEES
T ss_pred             CC--c-HHHHHHHHHHHHhhCCCCCeEEEEecCC--CCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeC
Confidence            67  3 5699999999999999999988764321  28999999999999999999999999999999999999999999


Q ss_pred             CC--ccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhC
Q 032754           81 GF--FHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKI  124 (134)
Q Consensus        81 ~i--~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~  124 (134)
                      ++  |||||+.+|+||+++|.+     +|+|++ |++||++|+++|.
T Consensus        76 ~~~~~Hpnv~~~G~iCl~~l~~-----~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          76 ENIPVHPHVYSNGHICLSILTE-----DWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             SCCCCBTTBCTTCBBCCGGGTT-----TCCTTSCHHHHHHHHHHHTC
T ss_pred             CCccccccCcCCCeEEeecCcC-----CCCCcCcHHHHHHHHHHHhC
Confidence            77  899999999999999987     799999 9999999998873

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=6.9e-41  Score=233.60  Aligned_cols=114  Identities=36%  Similarity=0.623  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      ++|.|||++|+++|+++++.|+.+.+.++    |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|++||
T Consensus         2 t~A~kRl~~El~~l~~~~~~gi~~~p~~~----n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   77 (153)
T d1ayza_           2 TPARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH   77 (153)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CHHHHHHHHHHHHHhHCCCCCEEEEECCC----cHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCc
Confidence            78999999999999999999999999986    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      |||+.+|.||++++.+     .|+|++ |++||.+|+++|..+.
T Consensus        78 PnI~~~G~icl~~l~~-----~W~p~~~i~~il~~i~~ll~~p~  116 (153)
T d1ayza_          78 PNVYANGEICLDILQN-----RWTPTYDVASILTSIQSLFNDPN  116 (153)
T ss_dssp             TTBCTTSBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHTCCC
T ss_pred             cCCCCCCccccccccc-----cCCCcCcHHHHHHHHHHHHcCCC
Confidence            9999999999999987     799999 9999999999998753

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=9.8e-41  Score=226.05  Aligned_cols=115  Identities=34%  Similarity=0.494  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   88 (134)
                      -||+||+++|++++++|+.+.+.+++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~---dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~   78 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD   78 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTT---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCC---CceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccC
Confidence            58999999999999999999886653   899999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           89 PSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        89 ~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      .+|+||+++|..+.        ..++|+|++ +++||++|+++|.+|
T Consensus        79 ~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          79 KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            99999999997531        134799999 999999999998765

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=231.61  Aligned_cols=114  Identities=28%  Similarity=0.513  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.|.|||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.|++||
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~~~----n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   76 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPKGD----NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYH   76 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEECCc----ccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcC
Confidence            36899999999999999999999999886    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      |||+++|.||++++.+     .|+|++ +.+||.+|+.+|.+|.
T Consensus        77 Pnv~~~G~iCl~~l~~-----~W~p~~~l~~il~~i~~ll~~p~  115 (148)
T d1y6la_          77 CNINSQGVICLDILKD-----NWSPALTISKVLLSICSLLTDCN  115 (148)
T ss_dssp             TTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             ceECCCCeEEEEecCC-----cCCCcEeHHHHHHHHHHHHhCCC
Confidence            9999999999999987     799999 9999999999987754

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=8.8e-41  Score=232.36  Aligned_cols=114  Identities=35%  Similarity=0.619  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      ++|.|||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|++||
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi~~~p~~~----n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   77 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGVSGAPTED----NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFH   77 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEECCC----chhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccc
Confidence            78999999999999999999999999876    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      |||+.+|.||+++|.+     .|+|++ |.+||.+|+++|..+-
T Consensus        78 PnI~~~G~iCl~~l~~-----~w~p~~~i~~il~~i~~ll~~p~  116 (149)
T d1z3da1          78 PNVYADGSICLDILQN-----RWSPTYDVAAILTSIQSLLDEPN  116 (149)
T ss_dssp             TTBCTTCBBCCGGGTT-----SCCTTCCHHHHHHHHHHTTSSCC
T ss_pred             eeEcCCCCEEeccccc-----cCCCCCCHHHHHHHHHHHhCCCC
Confidence            9999999999999987     799999 9999999999887643

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=1.5e-40  Score=220.24  Aligned_cols=106  Identities=25%  Similarity=0.428  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCC-ccCCCC
Q 032754           10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVY   88 (134)
Q Consensus        10 Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~   88 (134)
                      ||+||+++++++++.|+++.+.++    |+++|++.|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~----~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~   77 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPN----NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY   77 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTT----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCC----cccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceEC
Confidence            899999999999999999998776    999999999999999999999999999999999999999999986 899999


Q ss_pred             CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhC
Q 032754           89 PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKI  124 (134)
Q Consensus        89 ~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~  124 (134)
                      .+|+||+++|.+     +|+|++ +++||++|+++|.
T Consensus        78 ~~G~iCl~il~~-----~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          78 SNGDICLSLLGD-----DYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             TTSBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHC
T ss_pred             CCCeEEeecccC-----CCCccCCHHHHHHHHHHHhC
Confidence            999999999987     799999 9999999998873

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1.2e-40  Score=230.93  Aligned_cols=113  Identities=28%  Similarity=0.542  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      |+|||++|+++|+++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~~~~~----n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   77 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAGPVGD----DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   77 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCC----chhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceee
Confidence            699999999999999999999999886    9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD  128 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~  128 (134)
                      |+++|+||++++.+     .|+|++ +.+||.+|+++|.++..
T Consensus        78 V~~~G~iCl~~l~~-----~w~p~~~i~~Il~~i~~ll~~p~~  115 (147)
T d1z2ua1          78 INSNGSICLDILRS-----QWSPALTISKVLLSICSLLCDPNP  115 (147)
T ss_dssp             BCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred             ECCCCCEeeehhcc-----cCCCCCCHHHHHHHHHHHhccCCC
Confidence            99999999999998     799999 99999999998877543

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=1.8e-40  Score=232.41  Aligned_cols=115  Identities=31%  Similarity=0.455  Sum_probs=109.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754            4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (134)
Q Consensus         4 ~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (134)
                      ++.+.|||++|+++|+++++.|+++.+.++    |+++|+++|.||+||+|+||.|+++|.||++||++||+|+|.|++|
T Consensus         7 ~~~~~kRl~kEl~~l~~~~~~gi~~~p~~~----dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~   82 (156)
T d2e2ca_           7 RHSVSKRLQQELRTLLMSGDPGITAFPDGD----NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW   82 (156)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCTTEEEEESSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             cchHHHHHHHHHHHHhHCCCCCEEEEECCC----cccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCc
Confidence            456789999999999999999999999775    9999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           84 HPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        84 HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      ||||+.+|.||+++|.+     .|+|++ |.+||++|+++|..|-
T Consensus        83 Hpnv~~~G~icl~~l~~-----~Wsp~~~i~~vl~~i~~ll~~P~  122 (156)
T d2e2ca_          83 HPNVDQSGNICLDILKE-----NWTASYDVRTILLSLQSLLGEPN  122 (156)
T ss_dssp             BTTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCCCccccccCC-----CCCCcccHHHHHHHHHHHHhCCC
Confidence            99999999999999987     799999 9999999999997643

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=7.8e-41  Score=232.42  Aligned_cols=118  Identities=29%  Similarity=0.475  Sum_probs=110.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      ||  +.|.+||+||+++++++++.|+++.+.++    |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|
T Consensus         1 m~--~~a~~~L~kE~~~l~~~~~~gi~v~p~~~----n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t   74 (148)
T d1yrva1           1 MH--GRAYLLLHRDFCDLKENNYKGITAKPVSE----DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT   74 (148)
T ss_dssp             GG--CHHHHHHHHHHHHHHHHCCTTEEEEECST----TSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS
T ss_pred             CC--HHHHHHHHHHHHHHHHCCCCCEEEEECCC----cccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeecc
Confidence            88  89999999999999999999999999886    9999999999999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           81 GFFHPNVY-PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        81 ~i~HPnV~-~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      ++|||||+ .+|+||+++|...+   +|+|++ |++||.+|+++|..|.
T Consensus        75 ~i~HpnV~~~~G~iC~~~l~~~~---~W~p~~tl~~vL~~I~~ll~~p~  120 (148)
T d1yrva1          75 IPFHPNVDPHTGQPCIDFLDNPE---KWNTNYTLSSILLALQVMLSNPV  120 (148)
T ss_dssp             CCCCTTBCTTTCCBCCHHHHCGG---GCCTTCCHHHHHHHHHHHHTSCC
T ss_pred             ccccCceecCcccccccccCchh---hcCccccHHHHHHHHHHHHhCCC
Confidence            99999998 58999999996422   799999 9999999999987643

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=2.9e-40  Score=230.22  Aligned_cols=116  Identities=24%  Similarity=0.456  Sum_probs=110.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      |+  ..++|||++|+++|++++++|+++.+.++    |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|
T Consensus         3 ~~--~~~~kRl~kEl~~l~~~~~~gi~v~p~~~----dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   76 (151)
T d1zdna1           3 LP--PHIIRLVYKEVTTLTADPPDGIKVFPNEE----DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT   76 (151)
T ss_dssp             SC--HHHHHHHHHHHHHHHHSCCTTEEEEECSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--HHHHHHHHHHHHHHHhCCCCCeEEEEcCc----chheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCC
Confidence            56  78999999999999999999999999876    9999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           81 GFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        81 ~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      ++|||||+.+|++|++++.+     +|+|++ |++||++|+++|.++-
T Consensus        77 ~i~HPnI~~~G~ic~~~l~~-----~W~p~~~l~~il~~i~~~l~~p~  119 (151)
T d1zdna1          77 KIFHPNVGANGEICVNVLKR-----DWTAELGIRHVLLTIKCLLIHPN  119 (151)
T ss_dssp             CCCCTTBCTTSBBCHHHHTT-----TCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             CCCCceecCCCCcccccccc-----cCCccccHHHHHHHHHHHHhCCC
Confidence            99999999999999999987     899999 9999999999987643

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=229.84  Aligned_cols=112  Identities=29%  Similarity=0.420  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      +.|||++|+++|+++++.|+++.+.++    |+++|+++|.||+||+|+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~~----d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   77 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPESD----NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN   77 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEETT----EEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCC----cccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCccc
Confidence            689999999999999999999998876    9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      |+.+|.||++++.+     +|+|++ +++||++|+++|..+.
T Consensus        78 V~~~G~icl~~l~~-----~W~p~~~i~~il~~i~~ll~~p~  114 (146)
T d1i7ka_          78 VDTQGNISLDILKE-----KWSALYDVRTILLSIQSLLGEPN  114 (146)
T ss_dssp             BCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             CCCCCccccccccc-----cCCCCcCHHHHHHHHHHHHhCCC
Confidence            99999999999987     899999 9999999999987643

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=9e-40  Score=230.39  Aligned_cols=119  Identities=34%  Similarity=0.657  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      ..|.|||++|+++|++++++|+++.+..++   |+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~---nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   78 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH   78 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSS---CCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEECCcc---chhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCcee
Confidence            689999999999999999999999987653   99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||+++|....        ..+.|+|++ |++||.+|+++|.+|
T Consensus        79 Pnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p  129 (164)
T d2ucza_          79 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEP  129 (164)
T ss_dssp             TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSC
T ss_pred             ceEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCC
Confidence            999999999999997531        134799999 999999999988864

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=6.5e-40  Score=228.90  Aligned_cols=116  Identities=23%  Similarity=0.416  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      +.+||++|+++|.++++.|+++.+.++    |+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         3 ~~~Rl~kE~~~l~~~~~~gi~~~p~~~----~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   78 (154)
T d1yh2a1           3 RASRLKRELHMLATEPPPGITCWQDKD----QMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN   78 (154)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEESSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHHCcCCCEEEEECCc----chhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCC
Confidence            789999999999999999999999876    9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      |+.+|.+|+++|..+. .++|+|++ +.+||++|+++|..+.
T Consensus        79 V~~~g~icl~~l~~~~-~~~w~p~~~i~~il~~i~~ll~~p~  119 (154)
T d1yh2a1          79 IDSAGRICLDVLKLPP-KGAWRPSLNIATVLTSIQLLMSEPN  119 (154)
T ss_dssp             BCTTCBBCCGGGSCTT-TSCCCTTSCHHHHHHHHHHHHHSCC
T ss_pred             cCCCCCcccccccCCc-cccCCccccHHHHHHHHHHHhccCC
Confidence            9999999999997420 12799999 9999999999987643

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=6.4e-40  Score=229.59  Aligned_cols=118  Identities=60%  Similarity=1.070  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      .|++||++|+++|+++++.|+++.+.++ ++..|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            5799999999999999999999988853 456699999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|++|+++|...+   +|+|++ |++||.+|+++|.++
T Consensus        82 PnV~~~G~icl~~l~~~~---~W~p~~ti~~il~~i~~ll~~p  121 (156)
T d2uyza1          82 PNVYPSGTVSLSILEEDK---DWRPAITIKQILLGIQELLNEP  121 (156)
T ss_dssp             TTBCTTSBBCCGGGCTTT---TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             ccccccceeeecccCccc---ccCCcccHHHHHHHHHHHhcCC
Confidence            999999999999997643   799999 999999999998653

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=6e-40  Score=228.84  Aligned_cols=113  Identities=26%  Similarity=0.504  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.+.|||++|+++|++++++||.+.+.++    |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|+|++||
T Consensus         2 ~~~~rRl~~E~~~l~~~~~~g~~~~p~~~----n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~H   77 (152)
T d1jata_           2 ASLPKRIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH   77 (152)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEETT----EEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEEcCC----ccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCC
Confidence            45679999999999999999999999886    99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|.+|++++..     .|+|++ |.+||.+|+++|.++
T Consensus        78 PnI~~~G~icl~~~~~-----~W~p~~~i~~il~~i~~ll~~P  115 (152)
T d1jata_          78 PNIDRLGRICLDVLKT-----NWSPALQIRTVLLSIQALLASP  115 (152)
T ss_dssp             TTBCTTCCBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             CcCCCCCCeeeccccc-----cCCchhHHHHHHHHHHHHHcCC
Confidence            9999999999999988     799999 999999999999874

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=2.9e-39  Score=224.63  Aligned_cols=112  Identities=26%  Similarity=0.498  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      ..|||++|+++|+++++.|+.+.+.++    |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|++||||
T Consensus         3 ~~kRl~kEl~~l~~~~~~gi~~~p~~~----n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   78 (149)
T d1j7db_           3 LPRRIIKETQRLLAEPVPGIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN   78 (149)
T ss_dssp             SCHHHHHHHHHHTTSCCTTEEEEECSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             ccHHHHHHHHHHHhCCCCCEEEEECCC----cccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCce
Confidence            358999999999999999999999876    9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      |+.+|+||+++|.+     .|+|++ +.+||.+|+++|..+.
T Consensus        79 i~~~G~icl~~l~~-----~w~p~~~i~~il~~i~~ll~~p~  115 (149)
T d1j7db_          79 VDKLGRICLDILKD-----KWSPALQIRTVLLSIQALLSAPN  115 (149)
T ss_dssp             BCTTCBBCCGGGTT-----SCCTTSCHHHHHHHHHHHHHSCC
T ss_pred             ECCCCcEehHHhcC-----CCCCCccHHHHHHHHHHHHhCCC
Confidence            99999999999987     799999 9999999999987643

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.9e-39  Score=223.53  Aligned_cols=115  Identities=26%  Similarity=0.454  Sum_probs=108.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 032754            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (134)
Q Consensus         1 Ms~~~~~~kRl~~El~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~   77 (134)
                      ||  +.|.+||++|+++|+++   ...++.+.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus         1 Ms--~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~----n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   74 (154)
T d2bepa1           1 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR   74 (154)
T ss_dssp             CC--HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSS----SSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             Cc--hHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCC----ChhheEeeEecCccccccCCeeEEEEeccccccCCCCcce
Confidence            89  99999999999999876   467899998876    9999999999999999999999999999999999999999


Q ss_pred             ecCCCccCCCCC-CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           78 FPQGFFHPNVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        78 f~t~i~HPnV~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |.|++|||||+. +|.+|++++.+     .|+|++ |++||.+|+++|..+
T Consensus        75 f~t~i~Hpni~~~~g~ic~~~~~~-----~W~p~~~i~~il~~i~~ll~~p  120 (154)
T d2bepa1          75 FITKIWHPNISSVTGAICLDILKD-----QWAAAMTLRTVLLSLQALLAAA  120 (154)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             ecccCCCCCeeCCCCccccccccc-----cCCCcCCHHHHHHHHHHHHcCC
Confidence            999999999986 89999999987     799999 999999999998875

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=8.3e-39  Score=222.49  Aligned_cols=112  Identities=23%  Similarity=0.450  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      |.+||++|+++|++++++|+.+.+.+++   |++.|++.+ ||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~---~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   76 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDA---NVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN   76 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSS---CTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCC---ceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcce
Confidence            5799999999999999999999888654   899999866 899999999999999999999999999999999999999


Q ss_pred             CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |+.+|.||+++|..+    +|+|++ +.+||.+|+++|.++
T Consensus        77 I~~~G~icl~~l~~~----~W~p~~~i~~il~~i~~ll~~p  113 (150)
T d1wzva1          77 VDENGQICLPIISSE----NWKPCTKTCQVLEALNVLVNRP  113 (150)
T ss_dssp             BCTTCBCCCGGGCTT----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             ECCCCCccccccccc----CCCchhHHHHHHHHHHHHHhCC
Confidence            999999999999764    799999 999999999998764

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=1.6e-38  Score=223.35  Aligned_cols=117  Identities=30%  Similarity=0.484  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCC
Q 032754            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (134)
Q Consensus         8 ~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   87 (134)
                      ..||+||+++|++++++|+++.+.+++   |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~---dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI   78 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDN---DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI   78 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTT---CTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTB
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCC---CceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCccc
Confidence            579999999999999999999987653   89999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754           88 YPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISSL  127 (134)
Q Consensus        88 ~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~~  127 (134)
                      +.+|.||+++|.++.        ..+.|+|++ |.+||++|+++|.+|.
T Consensus        79 ~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~  127 (161)
T d1pzva_          79 DKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPN  127 (161)
T ss_dssp             CTTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             CCCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCC
Confidence            999999999997631        123699999 9999999999987743

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=4e-38  Score=216.56  Aligned_cols=121  Identities=20%  Similarity=0.191  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      ..+.+||+||++++++++++++.+...++++..|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++||
T Consensus         4 ~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             cchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            46889999999999999999988888776666789999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754           85 PNVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD  128 (134)
Q Consensus        85 PnV~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~  128 (134)
                      |||+. +|.+|.+.+....   +|+|++ |++||++|+++|.++++
T Consensus        84 pnV~~~~g~~~~~~l~~l~---~Wsp~~ti~~iL~~i~slL~~peN  126 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISVLA---KWQNSYSIKVVLQELRRLMMSKEN  126 (139)
T ss_dssp             TTBCTTTCBBCGGGSHHHH---TCCTTCCHHHHHHHHHHHHTSTTT
T ss_pred             ccCcCCCCEEcceecCccc---CCCccCcHHHHHHHHHHHHCCCCC
Confidence            99965 6777776654211   699999 99999999999988644

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=1.1e-38  Score=218.45  Aligned_cols=121  Identities=17%  Similarity=0.231  Sum_probs=103.4

Q ss_pred             chHHHHHHHHHHHHHHHcCC-CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCC
Q 032754            4 GGIARGRLTEERKAWRKNHP-HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (134)
Q Consensus         4 ~~~~~kRl~~El~~l~~~~~-~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (134)
                      +..+.+||+||+++++++.+ .++++...++ +..|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++
T Consensus         2 ~~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~-dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i   80 (136)
T d1jatb_           2 KVPRNFRLLEELEKGEKGFGPESCSYGLADS-DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKI   80 (136)
T ss_dssp             CCCHHHHHHHHHHHHHC----CCEEEEESST-TCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             CCchHHHHHHHHHHHhccCCCCcEEEeecCC-CCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccc
Confidence            46789999999999999864 5565655543 345799999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC-CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcch
Q 032754           83 FHPNVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLDD  129 (134)
Q Consensus        83 ~HPnV~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~d  129 (134)
                      |||||+. +|.||++++...    +|+|++ |++||++|+++|.+|-+.
T Consensus        81 ~HpnV~~~~G~icl~~l~~~----~Wsp~~ti~~IL~~i~~lL~~P~n~  125 (136)
T d1jatb_          81 NLPCVNPTTGEVQTDFHTLR----DWKRAYTMETLLLDLRKEMATPANK  125 (136)
T ss_dssp             CCTTBCTTTCBBCTTSHHHH----TCCTTCCHHHHHHHHHHHHTSHHHH
T ss_pred             cccccccCCCeEECCCCccc----CcCccCcHHHHHHHHHHHHcCCCCC
Confidence            9999975 699999988643    699999 999999999998775443

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=2.9e-38  Score=219.52  Aligned_cols=112  Identities=25%  Similarity=0.435  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (134)
Q Consensus         7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   86 (134)
                      +.|||++|+++|++++++|+++.+.+++   |+++|+++|.||+||+|+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~---~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   78 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSS---CSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCC---chhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCc
Confidence            6899999999999999999999876553   9999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           87 VYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        87 V~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |+. +|.+|++++.+     .|+|++ |++||.+|+++|.++
T Consensus        79 I~~~~~~~~~~~~~~-----~W~p~~ti~~il~~i~~ll~~p  115 (149)
T d1fzya_          79 ISSVTGAICLDILKN-----AWSPVITLKSALISLQALLQSP  115 (149)
T ss_dssp             BCTTTCCBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             ccCCcceeechhhcc-----cCCCcCCHHHHHHHHHHHHhCC
Confidence            976 78899998887     799999 999999999999864

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=220.64  Aligned_cols=110  Identities=25%  Similarity=0.469  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   88 (134)
                      |||++|+++|.+++..|+.+.+.+++   |+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~---n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   77 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEA---NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID   77 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCS---SSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCC---cceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCc
Confidence            89999999999999999988777654   999999998 99999999999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           89 PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        89 ~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      .+|.||+++|..+    .|+|++ +.+||.+|+++|.++
T Consensus        78 ~~G~icl~~l~~~----~w~p~~~i~~il~~i~~ll~~p  112 (144)
T d1c4zd_          78 EKGQVCLPVISAE----NWKPATKTDQVIQSLIALVNDP  112 (144)
T ss_dssp             TTCBBCCTTTSSS----SCCTTCCHHHHHHHHHHHHHSC
T ss_pred             cCCccccccccCC----CCCCcccHHHHHHHHHHHHhCC
Confidence            9999999999975    699999 999999999998764

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=4.5e-37  Score=215.97  Aligned_cols=111  Identities=29%  Similarity=0.544  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHH-------------cCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCC
Q 032754            7 ARGRLTEERKAWRK-------------NHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKP   73 (134)
Q Consensus         7 ~~kRl~~El~~l~~-------------~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~p   73 (134)
                      ..+||+||+++|++             +...|+++.+.++    |+++|+++|.||+||||+||.|+++|.||++||++|
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~p   77 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGG----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP   77 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCC----ccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCC
Confidence            57999999999977             3466899999986    999999999999999999999999999999999999


Q ss_pred             CeeeecCCCccCCC-CCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           74 PKCKFPQGFFHPNV-YPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        74 P~v~f~t~i~HPnV-~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |+|+|.|++||||| +.+|.||++++..     .|+|++ |++||.+|+++|.+|
T Consensus        78 P~V~F~t~i~HPni~~~~G~icl~~l~~-----~W~p~~si~~iL~~I~~ll~~P  127 (161)
T d2f4za1          78 PKMKFVTKIWHPNISSQTGAICLDILKH-----EWSPALTIRTALLSIQAMLADP  127 (161)
T ss_dssp             CEEEESSCCCBTTBCTTTCBBCCGGGTT-----TCCTTSCHHHHHHHHHHHHHSC
T ss_pred             cEEEecCCCCCCceECCCCCeecCcccc-----cCCCcccHHHHHHHHHHHHhCC
Confidence            99999999999999 6689999999987     799999 999999999998764

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=213.33  Aligned_cols=111  Identities=25%  Similarity=0.446  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (134)
Q Consensus         5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (134)
                      +.|.+||++|+++|++  ++++.+...+++   |+++|+++| ||++|+|+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 ~~a~~Rl~kEl~~l~~--~~~~~i~~~~~~---~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~H   75 (157)
T d1y8xa1           2 SAAQLRIQKDINELNL--PKTCDISFSDPD---DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   75 (157)
T ss_dssp             CHHHHHHHHHHHTCCC--CTTEEEECSSTT---CTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CHHHHHHHHHHHHhCC--CCCCcEEEcCCC---cceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCC
Confidence            7899999999999964  456777666543   999999999 8999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |||+.+|+||++++.+     +|+|++ |++||.+|+++|..|
T Consensus        76 Pnv~~~G~ic~~~~~~-----~W~p~~~i~~il~~I~~ll~~P  113 (157)
T d1y8xa1          76 PNIDLEGNVCLNILRE-----DWKPVLTINSIIYGLQYLFLEP  113 (157)
T ss_dssp             TTBCTTCBBCCGGGTT-----TCCTTCCHHHHHHHHHHHHHSC
T ss_pred             ccccccceeeeeeccc-----CCCCCCcHHHHHHHHHHHHcCC
Confidence            9999999999999987     799999 999999999999875

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=6.2e-36  Score=209.36  Aligned_cols=113  Identities=23%  Similarity=0.340  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (134)
Q Consensus         6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   85 (134)
                      +|.|||++|+++|++++++|+++.+.++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|+
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~~----n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~   76 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLPS----NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRF   76 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEETT----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSB
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCc----ccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCccc
Confidence            4899999999999999999999999886    999999999999999999999999999999999999999999998888


Q ss_pred             CCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           86 NVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        86 nV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      |++  |++|+.++...  .++|+|++ |++||++|+++|..|
T Consensus        77 ~~~--g~~~~~~l~~~--~~~Wsp~~ti~~il~~i~~ll~~p  114 (157)
T d2f4wa1          77 KCN--TRLCLSITDFH--PDTWNPAWSVSTILTGLLSFMVEK  114 (157)
T ss_dssp             CTT--SCBC------------CCTTCCHHHHHHHHHHHHHSC
T ss_pred             CCC--CCeeeeecccc--CCCCCccCcHHHHHHHHHHHccCC
Confidence            875  45554443211  11799999 999999999998864

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-36  Score=211.59  Aligned_cols=115  Identities=13%  Similarity=0.287  Sum_probs=101.9

Q ss_pred             chHHHHHHHHHHHHHHHcCC--CC-eEEeecCCCCCCCcceEEEEEcC-CCCCCCCCCE-----------EEEEEEcCCC
Q 032754            4 GGIARGRLTEERKAWRKNHP--HG-FVAKPETKDGSVNLMIWECIIPG-KTGTDWEGGY-----------FPLTLYFSED   68 (134)
Q Consensus         4 ~~~~~kRl~~El~~l~~~~~--~~-~~~~~~~~~~~~~~~~w~~~i~g-p~~t~y~gg~-----------f~~~i~fp~~   68 (134)
                      ...|.+||+||+++|++++.  .| +.+.+.++    |+++|++.|.| |++|+|+||.           |+++|.||++
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~d----nl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~   77 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELIND----SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDN   77 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETT----EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTT
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCC----cccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCc
Confidence            47899999999999998754  34 44556555    99999999999 7899999886           9999999999


Q ss_pred             CCCCCCeeeecCCCccCCC-CCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           69 YPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        69 YP~~pP~v~f~t~i~HPnV-~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                      ||++||+|+|.|++||||+ +.+|.||+++|..+    +|+|++ |++||++|+++|.++
T Consensus        78 YP~~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~----~WsP~~ti~~IL~~i~~ll~~~  133 (162)
T d1zuoa1          78 FPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ----GWSSAYSIESVIMQINATLVKG  133 (162)
T ss_dssp             TTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTT----TCCTTSCHHHHHHHHHHHHHHT
T ss_pred             hhhhcceEEEEEEeeccccccCCceeecccccCC----CCCCcccHHHHHHHHHHHHcCC
Confidence            9999999999999999995 88999999999764    799999 999999999998663

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=5.3e-35  Score=204.77  Aligned_cols=104  Identities=24%  Similarity=0.335  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCC
Q 032754            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (134)
Q Consensus         8 ~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   87 (134)
                      .|||++|+++|.+++..   +.+. +    |+++|++.|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~~-d----~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI   73 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYPS-D----TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV   73 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEEC-S----STTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHhcCCCc---CCCC-C----CceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCC
Confidence            69999999999977743   4553 3    99999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCceeeccCCCCCCCCCCChHH-HHHHHHHHH-HhhC
Q 032754           88 YP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSG-LAKI  124 (134)
Q Consensus        88 ~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~-~~l~  124 (134)
                      +. +|.||+++|.+     +|+|++ +.++|+.++ .++.
T Consensus        74 ~~~~G~vcl~il~~-----~W~p~~~i~~il~~~i~~ll~  108 (158)
T d1yf9a1          74 DERSGSVCLDVINQ-----TWTPMYQLENIFDVFLPQLLR  108 (158)
T ss_dssp             CTTTCBBCHHHHHH-----HCCTTCCTHHHHHTHHHHHHH
T ss_pred             ccCccccccccccc-----ccCchHhhhhHHHHHHHHHhc
Confidence            65 89999999987     799999 999997655 4444

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.6e-22  Score=136.65  Aligned_cols=108  Identities=13%  Similarity=0.066  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCC---CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEE--EEEcCCCCCCCCCeeeecCC---
Q 032754           10 RLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL--TLYFSEDYPSKPPKCKFPQG---   81 (134)
Q Consensus        10 Rl~~El~~l~~~~~---~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~--~i~fp~~YP~~pP~v~f~t~---   81 (134)
                      +..+|+.++.+.-+   ++..+...++    +..+|.+.+.|+.+++|+||.|.+  .|.||.+||++||.|.|.+.   
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~d----g~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~   93 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFND----GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSM   93 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTT----SCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCC----CCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCc
Confidence            45567777776543   4555566654    789999999999999999999998  55589999999999988753   


Q ss_pred             --CccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754           82 --FFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS  126 (134)
Q Consensus        82 --i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~  126 (134)
                        ++||||+.+|+||+++|.+|     |.+.. +.+++..++.++...
T Consensus        94 ~~~~h~~V~~~G~V~lp~L~~W-----~~~~s~L~~ll~~L~~~f~~e  136 (141)
T d1s1qa_          94 TIKTGKHVDANGKIYLPYLHEW-----KHPQSDLLGLIQVMIVVFGDE  136 (141)
T ss_dssp             EECCSSSBCTTCBBCCHHHHTC-----CTTTCCHHHHHHHHHHHHHHS
T ss_pred             cccCCCeECCCCCCcchhhcCC-----CcccccHHHHHHHHHHHhCCC
Confidence              68999999999999999862     45566 999999999887653

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=3.8e-20  Score=127.91  Aligned_cols=113  Identities=15%  Similarity=0.097  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHcCC---CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE---EEEEEEcCCCCCCCCCeeeecCC
Q 032754            8 RGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY---FPLTLYFSEDYPSKPPKCKFPQG   81 (134)
Q Consensus         8 ~kRl~~El~~l~~~~~---~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~---f~~~i~fp~~YP~~pP~v~f~t~   81 (134)
                      .+|+.+|+.++.++-+   +...+...++    ...++.+.+.|.-..+|+|+.   +.+.|-||.+||+.||.+.|.+.
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~d----g~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~   96 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSD----GTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLE   96 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTT----SCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCT
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCC----CCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecC
Confidence            4688899998888643   2333333333    566778889999999999995   67888899999999999999864


Q ss_pred             -----------CccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcch
Q 032754           82 -----------FFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLDD  129 (134)
Q Consensus        82 -----------i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~d  129 (134)
                                 ++||||+.+|+||+++|.+|     |.|.. +.++|..|+.+|..+|.|
T Consensus        97 ~~~~~~~~~~i~~hp~Vd~~G~V~lp~L~~W-----~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_          97 NFDMNTISSSLPIQEYIDSNGWIALPILHCW-----DPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             TCCSCC----CGGGGGBCTTSCBCCHHHHSC-----CTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             cccccCCCcccccCCCCCCCCcEehHHhcCC-----CCccCcHHHHHHHHHHHhcCCCCC
Confidence                       57999999999999999873     67888 999999999999999887

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.2e-06  Score=55.77  Aligned_cols=76  Identities=25%  Similarity=0.409  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHc-------CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEcCCCC
Q 032754            7 ARGRLTEERKAWRKN-------HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSEDY   69 (134)
Q Consensus         7 ~~kRl~~El~~l~~~-------~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~Y   69 (134)
                      -..||..|++.|-+-       ....+.+..                 -++||-|.|.+          |.+++.+|..|
T Consensus        26 W~~RLKEEy~aLI~Yv~nNK~~dndWF~les-----------------n~~GT~W~GkCWyihnl~kYeFd~eFdIP~tY   88 (162)
T d2in1a1          26 WVQRLKEEYQSLIRYVENNKNADNDWFRLES-----------------NKEGTRWFGKCWYIHDLLKYEFDIEFDIPITY   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-----------------CTTSSEEEEEEEEEETTEEEEEEEEEECCTTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCeEEecc-----------------CCCCCeeeceeeEEEeeeEEEEEEEeccCCCC
Confidence            568999999988752       223333332                 24455555543          55677789999


Q ss_pred             CCCCCeeeecCC-CccCCCCCCCceeeccCC
Q 032754           70 PSKPPKCKFPQG-FFHPNVYPSGTVCLSILN   99 (134)
Q Consensus        70 P~~pP~v~f~t~-i~HPnV~~~G~vcl~~l~   99 (134)
                      |..||.|....- --..-.|..|+||++.-.
T Consensus        89 P~t~pEi~lPeLdGKTaKMYRGGkIClt~HF  119 (162)
T d2in1a1          89 PTTAPEIAVPELDGKTAKMYRGGKICLTDHF  119 (162)
T ss_dssp             TTSCCCCBCGGGSSSCSSSCGGGBCCCCTTS
T ss_pred             CCCCcceeccccCCchhhhhcCceeeccccc
Confidence            999999977641 123445788999997643

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.015  Score=36.06  Aligned_cols=68  Identities=15%  Similarity=0.110  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCC--CCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754           11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKT--GTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus        11 l~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~--~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      +..|+..|..==+..+.+....+  ........+.+....  +..-......+.+.+|++||..+|.+.+.+
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~   75 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNG--RTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   75 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTT--SSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccCC--CCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeec
Confidence            56788887764344454432222  112233444554211  111123568888999999999999998765

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.24  Score=31.11  Aligned_cols=24  Identities=13%  Similarity=0.029  Sum_probs=20.2

Q ss_pred             CEEEEEEEcCCCCCCCCCeeeecC
Q 032754           57 GYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus        57 g~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      -.+.+.+.+|++||..+|.|...+
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~   91 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS   91 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec
Confidence            357888999999999999987654

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.23  Score=31.05  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             CCEEEEEEEcCCCCCCCCCeeeecC
Q 032754           56 GGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus        56 gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      .-...+.+.+|.+||..+|.|...+
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~~   89 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVRS   89 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEEC
T ss_pred             CceEEEEEEecCcCCCcCCceeccC
Confidence            4468899999999999999987654

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.89  E-value=1.3  Score=27.37  Aligned_cols=72  Identities=11%  Similarity=0.011  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCC-CCCCcceEEEEEcCCC-CCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754            9 GRLTEERKAWRKNHPHGFVAKPETKD-GSVNLMIWECIIPGKT-GTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (134)
Q Consensus         9 kRl~~El~~l~~~~~~~~~~~~~~~~-~~~~~~~w~~~i~gp~-~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (134)
                      .+-..|+..|..==+..+........ .........+.+.... +.......+.+.|.||.+||..+|.+.+..
T Consensus        13 E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~   86 (137)
T d1ukxa_          13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             HHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEec
Confidence            45566777776422223333211110 0011123455555322 223344578999999999999999988765