Citrus Sinensis ID: 032758

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MSFLIIQLGDCFFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF
Secondary Structure (PSIPRED)
ccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEEEEEEccccEEEEEEcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEccccEEEEEEcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcc
Coil and Loop (DISEMBL)
MSFLIIQLGDCFFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLgsevymqadvpdtqhiFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEllqlpaetsvQEAIF
Flexible Loop (DISEMBL)
MSFLIIQLGDCFFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELlqlpaetsvqeaif
Low Complexity Region (SEG)
MSFLIIQLGDCFFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF
Disordered region (IsUnstruct)
**FLIIQLGDCFFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP**********
Disordered Region (DISOPRED)
*SFLIIQLGDCFFYLVYLTLNAGSSDLR******************NLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYT*******AQIKLVCEG******************
Disordered Region (DISEMBL)
MSFLIIQLGDCFFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE********
Disordered Region (DISPRO)
*SFLIIQLGDCFFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFLIIQLGDCFFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q54ND3	161	Protein UXT homolog OS=Di	yes	no	0.738	0.614	0.444	5e-19
A7T0W1	159	Protein UXT homolog OS=Ne	N/A	no	0.716	0.603	0.408	1e-13
Q9WTZ0	157	Protein UXT OS=Mus muscul	yes	no	0.701	0.598	0.382	5e-11
Q63ZY7	157	Protein UXT OS=Rattus nor	yes	no	0.701	0.598	0.382	5e-11
Q32P97	156	Protein UXT OS=Bos taurus	yes	no	0.701	0.602	0.382	9e-11
Q9UBK9	157	Protein UXT OS=Homo sapie	yes	no	0.701	0.598	0.372	5e-10
O28216	137	Prefoldin subunit alpha O	yes	no	0.701	0.686	0.302	6e-06
Q12ZJ7	138	Prefoldin subunit alpha O	yes	no	0.462	0.449	0.274	0.0002
Q8HYI9	154	Prefoldin subunit 5 OS=Bo	no	no	0.656	0.571	0.270	0.0003
Q99471	154	Prefoldin subunit 5 OS=Ho	no	no	0.582	0.506	0.269	0.0003

>sp|Q54ND3|UXT_DICDI Protein UXT homolog OS=Dictyostelium discoideum GN=DDB_G0285389 PE=3 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 70/99 (70%)

Query: 26  DLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFI 85
           +L+ NIE L +N + S++T++NLGSE Y++A V DT +I+VDIGLG HV++T  EA+KFI
Sbjct: 63  ELKSNIELLIENKMDSMKTMINLGSECYVKARVQDTSYIYVDIGLGIHVKYTLEEAIKFI 122

Query: 86  SQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP 124
           +++E  + + ++  T+ I  IK +I L+  G+ EL  L 
Sbjct: 123 NEKETFLNKTVENQTKKINQIKTKIDLIQNGLKELKHLE 161

Dictyostelium discoideum (taxid: 44689)

>sp|A7T0W1|UXT_NEMVE Protein UXT homolog OS=Nematostella vectensis GN=v1g140887 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 25  SDLRKNIENLEKNSVTS--LRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEAL 82
           + L+ +IE ++K  +    LR+ V+LG   + QA VPD   IF+ +G GF VEFT SEAL
Sbjct: 48  TQLKSSIEQIQKTDLKGKDLRSRVDLGCNFFCQASVPDPSRIFIAVGYGFFVEFTLSEAL 107

Query: 83  KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
            FI ++   +   +D+  +  A IKA +KLV  G+ EL
Sbjct: 108 NFIEKKLAHLQHSVDKLGKDAAKIKAHMKLVLGGLQEL 145

Nematostella vectensis (taxid: 45351)

>sp|Q9WTZ0|UXT_MOUSE Protein UXT OS=Mus musculus GN=Uxt PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 55/94 (58%)

Query: 27  LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
           LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct: 52  LRNVIERLQETNHSELYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query: 87  QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
           ++   +    D  T+   +IKA I ++ EG+ EL
Sbjct: 112 RKSSLLTELSDSLTKDSMNIKAHIHMMLEGLREL 145

Involved in gene transcription regulation. Acts in concert with the corepressor URI1 to regulate androgen receptor (AR) transcription. AR N-terminus-associated coactivator which may play a role in facilitating receptor-induced transcriptional activation. Potential component of mitochondrial-associated LRPPRC, a multidomain organizer that potentially integrates mitochondria and the microtubular cytoskeleton with chromosome remodeling. Increasing concentrations of UXT contributes to progressive aggregation of mitochondria and cell death potentially through its association with LRPPRC. May be a nuclear chaperone that promotes formation of the NF-kappa-B enhanceosome and which is essential for its nuclear function. Suppresses cell transformation and it might mediate this function by interaction and inhibition of the biological activity of cell proliferation and survival stimulatory factors like MECOM. Together with URI1, associates with chromatin to the NKX3-1 promoter region.

Mus musculus (taxid: 10090)

>sp|Q63ZY7|UXT_RAT Protein UXT OS=Rattus norvegicus GN=Uxt PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 55/94 (58%)

Query: 27  LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
           LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct: 52  LRNVIERLQETNHSELYMQVDLGCNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query: 87  QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
           ++   +    D  T+   +IKA I ++ EG+ EL
Sbjct: 112 RKSSLLTELSDSLTKDSMNIKANIHMMLEGLREL 145

Involved in gene transcription regulation. Acts in concert with the corepressor URI1 to regulate androgen receptor (AR) transcription. AR N-terminus-associated coactivator which may play a role in facilitating receptor-induced transcriptional activation. Potential component of mitochondrial-associated LRPPRC, a multidomain organizer that potentially integrates mitochondria and the microtubular cytoskeleton with chromosome remodeling. Increasing concentrations of UXT contributes to progressive aggregation of mitochondria and cell death potentially through its association with LRPPRC. May be a nuclear chaperone that promotes formation of the NF-kappa-B enhanceosome and which is essential for its nuclear function. Suppresses cell transformation and it might mediate this function by interaction and inhibition of the biological activity of cell proliferation and survival stimulatory factors like MECOM. Together with URI1, associates with chromatin to the NKX3-1 promoter region.

Rattus norvegicus (taxid: 10116)

>sp|Q32P97|UXT_BOVIN Protein UXT OS=Bos taurus GN=UXT PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 55/94 (58%)

Query: 27  LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
           LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct: 52  LRNVIERLQEANHSELYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query: 87  QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
           ++   +    D  T+   +IKA I ++ EG+ EL
Sbjct: 112 RKSSLLTELSDNLTKDSMNIKAHIHMLLEGLREL 145

Involved in gene transcription regulation. Acts in concert with the corepressor URI1 to regulate androgen receptor (AR) transcription. AR N-terminus-associated coactivator which may play a role in facilitating receptor-induced transcriptional activation. Potential component of mitochondrial-associated LRPPRC, a multidomain organizer that potentially integrates mitochondria and the microtubular cytoskeleton with chromosome remodeling. Increasing concentrations of UXT contributes to progressive aggregation of mitochondria and cell death potentially through its association with LRPPRC. May be a nuclear chaperone that promotes formation of the NF-kappa-B enhanceosome and which is essential for its nuclear function. Suppresses cell transformation and it might mediate this function by interaction and inhibition of the biological activity of cell proliferation and survival stimulatory factors like MECOM. Together with URI1, associates with chromatin to the NKX3-1 promoter region.

Bos taurus (taxid: 9913)

>sp|Q9UBK9|UXT_HUMAN Protein UXT OS=Homo sapiens GN=UXT PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 54/94 (57%)

Query: 27  LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
           LR  IE L++   + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct: 52  LRNVIERLQEAKHSELYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query: 87  QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
           ++   +    +  T+   +IKA I ++ EG+ EL
Sbjct: 112 RKSSLLTELSNSLTKDSMNIKAHIHMLLEGLREL 145

Involved in gene transcription regulation. Acts in concert with the corepressor URI1 to regulate androgen receptor transcription (AR). AR N-terminus-associated coactivator which may play a role in facilitating receptor-induced transcriptional activation (PubMed:11854421). Potential component of mitochondrial-associated LRPPRC, a multidomain organizer that potentially integrates mitochondria and the microtubular cytoskeleton with chromosome remodeling (PubMed:11827465). Increasing concentrations of UXT contributes to progressive aggregation of mitochondria and cell death potentially through its association with LRPPRC (PubMed:17554592). May be a nuclear chaperone that promotes formation of the NF-kappa-B enhanceosome and which is essential for its nuclear function (PubMed:17620405). Suppresses cell transformation and it might mediate this function by interaction and inhibition of the biological activity of cell proliferation and survival stimulatory factors like MECOM (PubMed:17635584). Together with URI1, associates with chromatin to the NKX3-1 promoter region.

Homo sapiens (taxid: 9606)

>sp|O28216|PFDA_ARCFU Prefoldin subunit alpha OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=pfdA PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 2/96 (2%)

Query: 25  SDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEAL 82
           ++ RK +E LE  ++  TS+  L+NLG  V+   DV +++ + VDIG G  VE    EA+
Sbjct: 36  NEYRKTLETLEFFESIDTSVEALMNLGGGVFAYVDVKNSKKMLVDIGSGVVVEREVGEAI 95

Query: 83  KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC 118
           +F+  R  KI    ++ T ++  + +Q + + + + 
Sbjct: 96  EFVKNRIKKIEENQEKMTSMLQQVLSQAQRIQQELA 131

Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|Q12ZJ7|PFDA_METBU Prefoldin subunit alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=pfdA PE=3 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 40/62 (64%)

Query: 36  KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQ 95
           K++  ++ T++ LG+   + A++ D   I V +G G  VE T +EA++ ++QR++++ + 
Sbjct: 51  KSASGAINTMIPLGAGALIHANIADVDKIVVSVGAGISVEKTPTEAIETLTQRKEELGKV 110

Query: 96  ID 97
           ++
Sbjct: 111 VE 112

Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

>sp|Q8HYI9|PFD5_BOVIN Prefoldin subunit 5 OS=Bos taurus GN=PFDN5 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 27  LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
           L+KN E  E         LV L S +Y+   + D +H+ +D+G G++VE T  +A  F  
Sbjct: 53  LKKNNEGKE--------LLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFK 104

Query: 87  QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122
           ++ D + +Q+++    +    A  + V E + + +Q
Sbjct: 105 RKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQ 140

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Bos taurus (taxid: 9913)

>sp|Q99471|PFD5_HUMAN Prefoldin subunit 5 OS=Homo sapiens GN=PFDN5 PE=1 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%)

Query: 45  LVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIA 104
           LV L S +Y+   + D +H+ +D+G G++VE T  +A  F  ++ D + +Q+++    + 
Sbjct: 63  LVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQ 122

Query: 105 SIKAQIKLVCEGICELLQ 122
              A  + V E + + +Q
Sbjct: 123 EKHAMKQAVMEMMSQKIQ 140

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
351722823	151	uncharacterized protein LOC100499907 [Gl	0.820	0.728	0.836	6e-48
224101403	151	predicted protein [Populus trichocarpa]	0.820	0.728	0.809	2e-46
255562972	210	protein binding protein, putative [Ricin	0.783	0.5	0.866	3e-46
449491762	155	PREDICTED: protein UXT homolog [Cucumis	0.820	0.709	0.809	3e-46
217072430	151	unknown [Medicago truncatula] gi|3884973	0.820	0.728	0.809	7e-46
449448012	155	PREDICTED: protein UXT homolog [Cucumis	0.820	0.709	0.8	8e-46
357487263	407	UXT-like protein [Medicago truncatula] g	0.820	0.270	0.809	2e-45
225435696	144	PREDICTED: protein UXT homolog [Vitis vi	0.761	0.708	0.843	2e-43
217073836	145	unknown [Medicago truncatula]	0.783	0.724	0.809	2e-43
115473139	149	Os07g0595800 [Oryza sativa Japonica Grou	0.753	0.677	0.821	3e-43

>gi|351722823|ref|NP_001237769.1| uncharacterized protein LOC100499907 [Glycine max] gi|255627579|gb|ACU14134.1| unknown [Glycine max]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 103/110 (93%)

Query: 25  SDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 84
           +DLRKNIENLEKNSVTSLRTLVN+GSEVY+QA+VPDTQHIFVD+G GFHVEFTWSEAL +
Sbjct: 42  TDLRKNIENLEKNSVTSLRTLVNIGSEVYLQAEVPDTQHIFVDVGFGFHVEFTWSEALNY 101

Query: 85  ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF 134
           I +RE+KIARQI+EYT+LIASIKAQIKLVCEGI ELLQLPAE S+ E IF
Sbjct: 102 IDKREEKIARQIEEYTQLIASIKAQIKLVCEGIRELLQLPAEKSLPERIF 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101403|ref|XP_002312264.1| predicted protein [Populus trichocarpa] gi|118482164|gb|ABK93012.1| unknown [Populus trichocarpa] gi|222852084|gb|EEE89631.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 103/110 (93%)

Query: 25  SDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 84
           SDLR++IENLEKNSVT+LRT+VNLGSEVYMQADVPDTQ IFVD+GLGFHVEFTW+EAL F
Sbjct: 42  SDLRRSIENLEKNSVTNLRTMVNLGSEVYMQADVPDTQRIFVDVGLGFHVEFTWTEALNF 101

Query: 85  ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF 134
           I+ RE+KIARQI+EYTRLI+SIKA+IKLVCEGI ELLQLPAE S+ + +F
Sbjct: 102 IALREEKIARQIEEYTRLISSIKARIKLVCEGIRELLQLPAEKSLPQRVF 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562972|ref|XP_002522491.1| protein binding protein, putative [Ricinus communis] gi|223538376|gb|EEF39983.1| protein binding protein, putative [Ricinus communis]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/105 (86%), Positives = 98/105 (93%)

Query: 25  SDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 84
           SDLR+NIENLE NSVTSLRTLVNLGSEVYMQADVPDTQ +FVDIGLGFHVEFTW+EAL +
Sbjct: 42  SDLRRNIENLENNSVTSLRTLVNLGSEVYMQADVPDTQRVFVDIGLGFHVEFTWAEALNY 101

Query: 85  ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSV 129
           IS RE+KIARQI+EYTR IASIKAQIKLVCEGI ELLQLPAE S+
Sbjct: 102 ISLREEKIARQIEEYTRQIASIKAQIKLVCEGIRELLQLPAEKSL 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491762|ref|XP_004158996.1| PREDICTED: protein UXT homolog [Cucumis sativus]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 103/110 (93%)

Query: 25  SDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 84
           SDLR+NIENLEKNS+T+LRTLVNLGSEVY+Q DVPDT+ IFVDIGLGFHVEFTWSEALKF
Sbjct: 46  SDLRRNIENLEKNSITNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKF 105

Query: 85  ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF 134
           IS +E+++ RQI+EYT+LIASIKAQIKLVCEGI ELLQLPAE +V+E +F
Sbjct: 106 ISLKEERLTRQIEEYTQLIASIKAQIKLVCEGIRELLQLPAERTVEERVF 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072430|gb|ACJ84575.1| unknown [Medicago truncatula] gi|388497398|gb|AFK36765.1| unknown [Medicago truncatula]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 99/110 (90%)

Query: 25  SDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 84
           +DLR NIEN+EKNSVTSLRT+VNLGSEVYMQA+VP TQHIFVDIG+GFHVEFTWSEAL F
Sbjct: 42  ADLRSNIENIEKNSVTSLRTMVNLGSEVYMQAEVPSTQHIFVDIGMGFHVEFTWSEALNF 101

Query: 85  ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF 134
           I +RE+KIARQI+EYT+LIASIKAQIKLVCEGI ELL LPAE  + E  F
Sbjct: 102 IEKREEKIARQIEEYTKLIASIKAQIKLVCEGIRELLDLPAEKPLPERRF 151

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448012|ref|XP_004141760.1| PREDICTED: protein UXT homolog [Cucumis sativus]

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 103/110 (93%)

Query: 25  SDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 84
           SDLR+NIENLEKNS+T++RTLVNLGSEVY+Q DVPDT+ IFVDIGLGFHVEFTWSEALKF
Sbjct: 46  SDLRRNIENLEKNSITNVRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKF 105

Query: 85  ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF 134
           IS +E+++ RQI+EYT+LIASIKAQIKLVCEGI ELLQLPAE +V+E +F
Sbjct: 106 ISLKEERLTRQIEEYTQLIASIKAQIKLVCEGIRELLQLPAERTVEERVF 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487263|ref|XP_003613919.1| UXT-like protein [Medicago truncatula] gi|355515254|gb|AES96877.1| UXT-like protein [Medicago truncatula]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 99/110 (90%)

Query: 25  SDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 84
           +DLR NIEN+EKNSVTSLRT+VNLGSEVYMQA+VP TQHIFVDIG+GFHVEFTWSEAL F
Sbjct: 298 ADLRSNIENIEKNSVTSLRTMVNLGSEVYMQAEVPSTQHIFVDIGMGFHVEFTWSEALNF 357

Query: 85  ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF 134
           I +RE+KIARQI+EYT+LIASIKAQIKLVCEGI ELL LPAE  + E  F
Sbjct: 358 IEKREEKIARQIEEYTKLIASIKAQIKLVCEGIRELLDLPAEKPLPERRF 407

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435696|ref|XP_002285690.1| PREDICTED: protein UXT homolog [Vitis vinifera] gi|297746436|emb|CBI16492.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 96/102 (94%)

Query: 25  SDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 84
           S+LR+NIENLEKNSVTSL+T+VNLGSEVYMQA+VPDTQ IFVDIGLGFHVEFTWSEALK+
Sbjct: 42  SNLRRNIENLEKNSVTSLQTMVNLGSEVYMQAEVPDTQRIFVDIGLGFHVEFTWSEALKY 101

Query: 85  ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE 126
           IS +E+ +A QI EYTRLIASIKAQIK+VCEGI ELLQLPAE
Sbjct: 102 ISIKEESLANQIQEYTRLIASIKAQIKIVCEGIRELLQLPAE 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073836|gb|ACJ85278.1| unknown [Medicago truncatula]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/105 (80%), Positives = 95/105 (90%)

Query: 30  NIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQRE 89
           NIEN+EK+SVTSLRT+VNLGSEVYMQA+VP TQHIFVDIG+GFHVEFTWSEAL FI +RE
Sbjct: 41  NIENIEKSSVTSLRTMVNLGSEVYMQAEVPSTQHIFVDIGMGFHVEFTWSEALNFIEKRE 100

Query: 90  DKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF 134
           +KIARQI+EYT+LIASIKAQIKLVCEGI ELL LPAE  + E  F
Sbjct: 101 EKIARQIEEYTKLIASIKAQIKLVCEGIRELLDLPAEKPLPERRF 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115473139|ref|NP_001060168.1| Os07g0595800 [Oryza sativa Japonica Group] gi|27817927|dbj|BAC55691.1| unknown protein [Oryza sativa Japonica Group] gi|29027781|dbj|BAC65917.1| unknown protein [Oryza sativa Japonica Group] gi|113611704|dbj|BAF22082.1| Os07g0595800 [Oryza sativa Japonica Group] gi|218199958|gb|EEC82385.1| hypothetical protein OsI_26725 [Oryza sativa Indica Group] gi|222637390|gb|EEE67522.1| hypothetical protein OsJ_24979 [Oryza sativa Japonica Group]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 94/101 (93%)

Query: 26  DLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFI 85
           DL++NIENLEKN VTS+R++VNLGSEVY QA+VPDT+HIFVDIGLGFHVEFTW EAL+FI
Sbjct: 49  DLKRNIENLEKNGVTSMRSMVNLGSEVYAQAEVPDTRHIFVDIGLGFHVEFTWQEALQFI 108

Query: 86  SQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE 126
           S RE ++ARQIDEYT LIASIKAQIKLVCEGI ELL+LPAE
Sbjct: 109 SVRESRLARQIDEYTHLIASIKAQIKLVCEGIRELLELPAE 149

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
DICTYBASE|DDB_G0285389	161	DDB_G0285389 "prefoldin alpha	0.731	0.608	0.448	3.1e-19
ZFIN|ZDB-GENE-040912-118	155	uxt "ubiquitously-expressed tr	0.701	0.606	0.414	1.3e-15
UNIPROTKB|F1RWU9	156	LOC100522472 "Uncharacterized	0.701	0.602	0.382	3.1e-12
UNIPROTKB|F1PPZ6	157	UXT "Uncharacterized protein"	0.701	0.598	0.382	3.9e-12
MGI|MGI:1277988	157	Uxt "ubiquitously expressed tr	0.701	0.598	0.382	3.9e-12
RGD|1359326	157	Uxt "ubiquitously-expressed, p	0.701	0.598	0.382	3.9e-12
UNIPROTKB|Q63ZY7	157	Uxt "Protein UXT" [Rattus norv	0.701	0.598	0.382	3.9e-12
UNIPROTKB|Q32P97	156	UXT "Protein UXT" [Bos taurus	0.701	0.602	0.382	6.4e-12
UNIPROTKB|Q9UBK9	157	UXT "Protein UXT" [Homo sapien	0.701	0.598	0.372	2.8e-11
UNIPROTKB|K7GT69	128	LOC100522472 "Uncharacterized	0.559	0.585	0.373	5.9e-09

DICTYBASE|DDB_G0285389 DDB_G0285389 "prefoldin alpha subunit family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 44/98 (44%), Positives = 70/98 (71%)

Query:    26 DLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFI 85
             +L+ NIE L +N + S++T++NLGSE Y++A V DT +I+VDIGLG HV++T  EA+KFI
Sbjct:    63 ELKSNIELLIENKMDSMKTMINLGSECYVKARVQDTSYIYVDIGLGIHVKYTLEEAIKFI 122

Query:    86 SQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123
             +++E  + + ++  T+ I  IK +I L+  G+ EL  L
Sbjct:   123 NEKETFLNKTVENQTKKINQIKTKIDLIQNGLKELKHL 160

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-040912-118 uxt "ubiquitously-expressed transcript" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/94 (41%), Positives = 62/94 (65%)

Query:    27 LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
             L+  I++++++    L+T V+LG   Y+QA VPD   I+V +G GF VEFT +EALKFI 
Sbjct:    47 LKNTIQSIQESGSKELKTDVDLGCNFYVQAHVPDASRIYVAVGYGFFVEFTHAEALKFIE 106

Query:    87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
             ++ +++    +  T+  A IKA I++V EG+ EL
Sbjct:   107 KKTNQLTEYTEVLTKDAAKIKANIRMVLEGLREL 140

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|F1RWU9 LOC100522472 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 36/94 (38%), Positives = 56/94 (59%)

Query:    27 LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
             LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct:    52 LRNVIERLQETNHSELYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query:    87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
             ++ + +    D  T+   +IKA I ++ EG+ EL
Sbjct:   112 RKSNLLTELSDSLTKDSMNIKAHIHMLLEGLREL 145

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1PPZ6 UXT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/94 (38%), Positives = 56/94 (59%)

Query:    27 LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
             LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct:    52 LRNVIERLQEANPSELYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query:    87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
             ++ + +    D  T+   +IKA I ++ EG+ EL
Sbjct:   112 RKSNLLTELSDSLTKDSMNIKAHIHMLLEGLREL 145

GO:0051297 "centrosome organization" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:1277988 Uxt "ubiquitously expressed transcript" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/94 (38%), Positives = 55/94 (58%)

Query:    27 LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
             LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct:    52 LRNVIERLQETNHSELYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query:    87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
             ++   +    D  T+   +IKA I ++ EG+ EL
Sbjct:   112 RKSSLLTELSDSLTKDSMNIKAHIHMMLEGLREL 145

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO;ISS

GO:0000930 "gamma-tubulin complex" evidence=ISS

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005856 "cytoskeleton" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=ISO;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051297 "centrosome organization" evidence=ISO;ISS

RGD|1359326 Uxt "ubiquitously-expressed, prefoldin-like chaperone" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/94 (38%), Positives = 55/94 (58%)

Query:    27 LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
             LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct:    52 LRNVIERLQETNHSELYMQVDLGCNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query:    87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
             ++   +    D  T+   +IKA I ++ EG+ EL
Sbjct:   112 RKSSLLTELSDSLTKDSMNIKANIHMMLEGLREL 145

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO;ISS

GO:0000930 "gamma-tubulin complex" evidence=ISO;ISS

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=ISO;ISS

GO:0003682 "chromatin binding" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005856 "cytoskeleton" evidence=ISO;ISS

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=ISO;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051297 "centrosome organization" evidence=ISO;ISS

GO:0051015 "actin filament binding" evidence=ISO

UNIPROTKB|Q63ZY7 Uxt "Protein UXT" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/94 (38%), Positives = 55/94 (58%)

Query:    27 LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
             LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct:    52 LRNVIERLQETNHSELYMQVDLGCNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query:    87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
             ++   +    D  T+   +IKA I ++ EG+ EL
Sbjct:   112 RKSSLLTELSDSLTKDSMNIKANIHMMLEGLREL 145

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|Q32P97 UXT "Protein UXT" [Bos taurus (taxid:9913)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 36/94 (38%), Positives = 55/94 (58%)

Query:    27 LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
             LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct:    52 LRNVIERLQEANHSELYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query:    87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
             ++   +    D  T+   +IKA I ++ EG+ EL
Sbjct:   112 RKSSLLTELSDNLTKDSMNIKAHIHMLLEGLREL 145

GO:0005737 "cytoplasm" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=ISS

GO:0051297 "centrosome organization" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9UBK9 UXT "Protein UXT" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 35/94 (37%), Positives = 54/94 (57%)

Query:    27 LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
             LR  IE L++   + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct:    52 LRNVIERLQEAKHSELYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query:    87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120
             ++   +    +  T+   +IKA I ++ EG+ EL
Sbjct:   112 RKSSLLTELSNSLTKDSMNIKAHIHMLLEGLREL 145

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0000930 "gamma-tubulin complex" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0051297 "centrosome organization" evidence=IMP

GO:0008017 "microtubule binding" evidence=TAS

GO:0047497 "mitochondrion transport along microtubule" evidence=TAS

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

UNIPROTKB|K7GT69 LOC100522472 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query:    27 LRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86
             LR  IE L++ + + L   V+LG   ++   VPDT  I+V +G GF +E T +EALKFI 
Sbjct:    52 LRNVIERLQETNHSELYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFID 111

Query:    87 QREDKIARQIDEYTR 101
             ++ + +    D  T+
Sbjct:   112 RKSNLLTELSDSLTK 126

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII0789 SubName- Full=Putative uncharacterized protein; (151 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
pfam02996	120	pfam02996, Prefoldin, Prefoldin subunit	2e-16
cd00584	129	cd00584, Prefoldin_alpha, Prefoldin alpha subunit;	6e-14
cd00890	129	cd00890, Prefoldin, Prefoldin is a hexameric molec	4e-11
PRK03947	140	PRK03947, PRK03947, prefoldin subunit alpha; Revie	9e-10
COG1730	145	COG1730, GIM5, Predicted prefoldin, molecular chap	2e-09
TIGR00293	126	TIGR00293, TIGR00293, prefoldin, archaeal alpha su	1e-08

>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit

 Score = 69.6 bits (171), Expect = 2e-16
 Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 19  TLNAGSSDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEF 76
            L     +L K +E L+  K        LV LG+ ++++ +V DT  + VD+G G++VE 
Sbjct: 14  RLREAIEELEKTLETLKTLKKEDEGKEVLVPLGAGLFVKGEVIDTDKVLVDLGAGYYVEK 73

Query: 77  TWSEALKFISQREDKIARQIDEYTRLIASIKAQIK 111
           +  EA++F+ +R +++ +Q+++    +  +K QI 
Sbjct: 74  SLEEAIEFLKKRIEELEKQLEKLEEELEKLKDQIT 108

This family comprises of several prefoldin subunits. The biogenesis of the cytoskeletal proteins actin and tubulin involves interaction of nascent chains of each of the two proteins with the oligomeric protein prefoldin (PFD) and their subsequent transfer to the cytosolic chaperonin CCT (chaperonin containing TCP-1). Electron microscopy shows that eukaryotic PFD, which has a similar structure to its archaeal counterpart, interacts with unfolded actin along the tips of its projecting arms. In its PFD-bound state, actin seems to acquire a conformation similar to that adopted when it is bound to CCT. Length = 120

>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 63.4 bits (155), Expect = 6e-14
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)

Query: 19  TLNAGSSDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEF 76
            LN   ++  +  E LE  K +     TLV LG+ V+++A V DT  + VD+G G++VE 
Sbjct: 24  RLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEK 83

Query: 77  TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122
              EA++F+ ++ +++ +QI++  + +A +K QI  +   + EL Q
Sbjct: 84  DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 55.8 bits (135), Expect = 4e-11
 Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 19  TLNAGSSDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEF 76
            L A  ++  K  E LE  K +      LV LG+ ++++A+V D   + VD+G G +VE 
Sbjct: 24  KLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEK 83

Query: 77  TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122
           +  EA++F+ +R + + +QI++  + +  ++ QI  + E + +L Q
Sbjct: 84  SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed

 Score = 52.6 bits (127), Expect = 9e-10
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 19  TLNAGSSDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEF 76
            L A  ++L    E LE  K+      TLV +G+  +++A V D   + V +G G+  E 
Sbjct: 31  ELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEK 90

Query: 77  TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEA 132
              EA++ + +R        +E  + +  ++  ++ +   I +L Q   +   + A
Sbjct: 91  DLDEAIEILDKR-------KEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139

Length = 140

>gnl|CDD|224644 COG1730, GIM5, Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 9/118 (7%)

Query: 17  YLTLNAGSSDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHV 74
              LNA  S+L+  IE LE  K +      LV +G+ ++++A V D   + V IG G++ 
Sbjct: 29  IAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYA 88

Query: 75  EFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEA 132
           E +  EA++F       + ++I+E  + I  ++  +  + + I +L Q   +   ++A
Sbjct: 89  EKSADEAIEF-------LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139

Length = 145

>gnl|CDD|129394 TIGR00293, TIGR00293, prefoldin, archaeal alpha subunit/eukaryotic subunit 5

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 19  TLNAGSSDLRKNIENLEK-NSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFT 77
            L A  ++L   IE LE         TLV +G+  +++A V DT  + V IG G++VE  
Sbjct: 24  ALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKD 83

Query: 78  WSEALKFISQREDKIARQIDEYTRLIASIKAQI 110
             EA++F+ +R +++ + I++    +A + ++ 
Sbjct: 84  AEEAIEFLKKRIEELEKAIEKLQEALAELASRA 116

Members of this protein family, rich in coiled coil regions, are molecular chaperones in the class of the prefoldin (GimC) alpha subunit. Prefoldin is a hexamer of two alpha and four beta subunits. This protein appears universal in the archaea but is restricted to Aquifex aeolicus among bacteria so far. Eukaryotes have several related proteins; only prefoldin subunit 5, which appeared the most similar to archaeal prefoldin alpha, is included in this model. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil [Protein fate, Protein folding and stabilization]. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	99.95
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.94
PRK14011	144	prefoldin subunit alpha; Provisional	99.94
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.93
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	99.93
KOG3048	153	consensus Molecular chaperone Prefoldin, subunit 5	99.92
PRK03947	140	prefoldin subunit alpha; Reviewed	99.92
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.91
PRK01203	130	prefoldin subunit alpha; Provisional	99.91
KOG3047	157	consensus Predicted transcriptional regulator UXT	99.83
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	99.57
KOG3130	514	consensus Uncharacterized conserved protein [Funct	99.25
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	98.2
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	98.01
PF13758	99	Prefoldin_3: Prefoldin subunit	97.95
PRK03947	140	prefoldin subunit alpha; Reviewed	97.66
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	97.64
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	97.52
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	97.35
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	97.13
PRK01203	130	prefoldin subunit alpha; Provisional	96.95
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	96.66
PRK09343	121	prefoldin subunit beta; Provisional	96.48
PRK14011	144	prefoldin subunit alpha; Provisional	96.32
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	95.97
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	95.24
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	91.55
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	87.37
PF02388	406	FemAB: FemAB family; InterPro: IPR003447 The femAB	86.66
COG1862	97	YajC Preprotein translocase subunit YajC [Intracel	85.61
PRK00736	68	hypothetical protein; Provisional	85.57
PRK00295	68	hypothetical protein; Provisional	84.27
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	84.25
PRK05585	106	yajC preprotein translocase subunit YajC; Validate	83.24
PRK09343	121	prefoldin subunit beta; Provisional	81.96
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	81.08
PRK00295	68	hypothetical protein; Provisional	80.24
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	80.11

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=99.95  E-value=8.3e-27  Score=165.91  Aligned_cols=108  Identities=26%  Similarity=0.472  Sum_probs=100.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      +-.++....+|..++++|+.+++ ..++.+++||+|+|+|++|+|+++++|+|+||+|||||+|.++|++|+++|++.++
T Consensus        12 ~~~l~~~~~e~~~~~~~l~~l~~-~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~   90 (120)
T PF02996_consen   12 IEQLEEQIEEYEEAKETLEELKK-EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELE   90 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT---TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHH
Confidence            55688899999999999999998 33688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICELLQ  122 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~~  122 (134)
                      +.++++++++..++++++.+...++++++
T Consensus        91 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  119 (120)
T PF02996_consen   91 EQLEKLEKELAELQAQIEQLEQTLQQLYQ  119 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999875

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.94  E-value=1.9e-25  Score=161.50  Aligned_cols=107  Identities=29%  Similarity=0.463  Sum_probs=101.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      +=.++..+.+|..++++|+++++. .++.++|||+|+|+|++|+|+++++|+|+||+|||||+|.++|++|+++|++.|+
T Consensus        22 ~~~l~~~~~e~~~~~~~l~~l~~~-~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~  100 (129)
T cd00584          22 LARLNEAIAEYEQAKETLETLKKA-DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELT  100 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHH
Confidence            446788899999999999999875 3688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      +.++++++.+..++++++.+...+++++
T Consensus       101 ~~~~~l~~~l~~l~~~~~~~~~~l~~~~  128 (129)
T cd00584         101 KQIEKLQKELAKLKDQINTLEAELQELQ  128 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999865

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=99.94  E-value=1.4e-25  Score=166.81  Aligned_cols=102  Identities=16%  Similarity=0.236  Sum_probs=94.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      +=.++.++++|.+++++|+.+.    ++.++|||||+|+||||+|.|+++|+|+||+|||||+|.++|++|+++|++.|+
T Consensus        26 i~~L~~a~~e~~~~ie~L~~l~----~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~  101 (144)
T PRK14011         26 LSSIDMMKMELLKSIESMEGLK----TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEELD  101 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC----CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHHHH
Confidence            5678999999988888888655    367999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICE  119 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~q  119 (134)
                      +..+++...+.+++.++..+...+++
T Consensus       102 ~~~~~l~~~i~~~~~~~~~l~~~L~~  127 (144)
T PRK14011        102 KTKKEGNKKIEELNKEITKLRKELEK  127 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999866644

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.93  E-value=7e-25  Score=157.99  Aligned_cols=104  Identities=23%  Similarity=0.388  Sum_probs=97.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      +-.++.++.+|..+.++|+.+++.  .+.+++||+|+|+|++|+|+++++|+||||+|||||+|.++|++|+++|++.++
T Consensus        22 i~~l~~~i~e~~~~~~~L~~l~~~--~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~   99 (126)
T TIGR00293        22 IAALRALIAELETAIETLEDLKGA--EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELE   99 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc--CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHH
Confidence            556888899999999999999865  478999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICE  119 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~q  119 (134)
                      +.++++++.+.+++++++.+...+++
T Consensus       100 ~~~~~l~~~l~~l~~~~~~i~~~l~~  125 (126)
T TIGR00293       100 KAIEKLQEALAELASRAQQLEQEAQQ  125 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999988875

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.8e-24  Score=160.83  Aligned_cols=110  Identities=21%  Similarity=0.356  Sum_probs=103.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      +-.++.++.++..++++|++++... ++.++|||+|+|+|++|+|.++++|+|+||+|||||++.++|++|+++|++.|+
T Consensus        29 i~~l~~~~~e~~~~~~tl~~lk~~~-~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~  107 (145)
T COG1730          29 IAALNAAISELQTAIETLENLKGAG-EGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELE  107 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999876 377999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICELLQLP  124 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~  124 (134)
                      +.++++++.+.++-.++..+...++++++-+
T Consensus       108 ~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~  138 (145)
T COG1730         108 KAIEKLQQALAELAQRIEQLEQEAQQLQQKQ  138 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999876543

>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.6e-24  Score=159.81  Aligned_cols=108  Identities=16%  Similarity=0.265  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHH
Q 032758           13 FYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKI   92 (134)
Q Consensus        13 ~~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L   92 (134)
                      |+=.++.++.+|.+++++|+.++..+ +|.++|||++++.||||++.|++|++|+||+|||||++.++|++|++||++.|
T Consensus        35 Sl~~L~~aq~k~~~~~~aln~~~~~~-eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK~~e~akdyfkRKve~l  113 (153)
T KOG3048|consen   35 SLNALKGAQTKYEESIAALNDVQAAN-EGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEKDAEDAKDYFKRKVEYL  113 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCC-CCCeEEEecccceeccceeccccceeEeccCceEEeechHHHHHHHHHHHHHH
Confidence            46678999999999999999988876 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           93 ARQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        93 ~~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      .+++++++..+.+++.....+++.+++-.
T Consensus       114 ~kq~e~i~~i~~eK~~~~~~v~~v~q~Kv  142 (153)
T KOG3048|consen  114 TKQIEQIEGILKEKTRTRASVMDVLQAKV  142 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998887643

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.92  E-value=3.8e-24  Score=156.95  Aligned_cols=109  Identities=17%  Similarity=0.375  Sum_probs=101.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      +-.++.+..+|..++++|+.+++.. ++.+++||+|+|+|++|+|+++++|+||||+|||||+|+++|++|+++|++.|+
T Consensus        29 ~~~l~~~~~e~~~~~e~l~~l~~~~-~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~  107 (140)
T PRK03947         29 LEELQASINELDTAKETLEELKSKG-EGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELE  107 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccC-CCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHH
Confidence            4567888889999999999988754 678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICELLQL  123 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~  123 (134)
                      +.++.+++.+..+++++..+...++++..-
T Consensus       108 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947        108 KALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999997643

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.91  E-value=3.2e-23  Score=148.50  Aligned_cols=107  Identities=24%  Similarity=0.427  Sum_probs=101.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      +=.++....+|..++++|+.++... ++.++++|+|+++|++|+|+++++|+|+||+|||||+|.++|.+++++|++.++
T Consensus        22 ~~~l~~~~~e~~~~~~~l~~l~~~~-~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~  100 (129)
T cd00890          22 LQKLEAQLTEYEKAKETLETLKKAE-EEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLE  100 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC-CCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHH
Confidence            5678889999999999999999765 567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      +.++++++.+..++++++.+...+++++
T Consensus       101 ~~~~~l~~~~~~~~~~~~~l~~~l~~~~  128 (129)
T cd00890         101 KQIEKLEKQLEKLQDQITELQEELQQLQ  128 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999865

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK01203 prefoldin subunit alpha; Provisional

Probab=99.91  E-value=2.8e-23  Score=151.88  Aligned_cols=103  Identities=14%  Similarity=0.204  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      +=.++.++++|.++.++|+.++..  ++.++|||+|+|+||||+|.|+++|+|+||+|||||+|.++|+++++++++.|+
T Consensus        23 l~~L~~a~se~~~~ie~L~~~~~~--~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le  100 (130)
T PRK01203         23 IDSLNKTLSEVQQTISFLSDNELD--NSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERERTIERLKENLEDLK  100 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccC--CCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHH
Confidence            456889999999988888886533  478999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICEL  120 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql  120 (134)
                      +.+...++.+..+.+++..+.  |+++
T Consensus       101 ~~i~~K~~~l~~i~~~~~~l~--~~~~  125 (130)
T PRK01203        101 DSIQKLNDQRKTLVDQYNTVY--ITEA  125 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            998888888888888888776  5544

>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]

Probab=99.83  E-value=1.9e-19  Score=131.46  Aligned_cols=113  Identities=26%  Similarity=0.375  Sum_probs=104.5

Q ss_pred             HHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHH
Q 032758           17 YLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQI   96 (134)
Q Consensus        17 ~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~   96 (134)
                      +...-++|.+++.+|+.|.+...+..+..+++||.+|+..+|+|+++|+|.+|.|||+|+++.+|++|++++.+.|.+.+
T Consensus        42 l~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~DRK~dlLkel~  121 (157)
T KOG3047|consen   42 LQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFCDRKMDLLKELM  121 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHHHHhHHHHHHHH
Confidence            34556789999999999998877889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 032758           97 DEYTRLIASIKAQIKLVCEGICELLQLPAETSV  129 (134)
Q Consensus        97 ~~l~~~l~~ik~~i~~v~~~i~ql~~~~~~~~~  129 (134)
                      ++|+++..++++.|.++...+..++..+--.+.
T Consensus       122 ekLqKdsmkiKa~ihMLLagl~elqg~~~f~ek  154 (157)
T KOG3047|consen  122 EKLQKDSMKIKADIHMLLAGLDELQGEPFFFEK  154 (157)
T ss_pred             HHHHHhHHHHHHHHHHHHHhhhhhcCCccccCC
Confidence            999999999999999999999999887654433

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.5e-14  Score=110.11  Aligned_cols=104  Identities=17%  Similarity=0.309  Sum_probs=91.3

Q ss_pred             HHhhHHHHHHHHHHhh---cCC--CCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHH
Q 032758           20 LNAGSSDLRKNIENLE---KNS--VTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIAR   94 (134)
Q Consensus        20 ~~~ey~el~~~I~~L~---~~~--~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~   94 (134)
                      ...+.++++++|+...   +..  ++..++.+-+..|+|.+|.|+++++|.+|+|+++.+|++++||.++|++++....+
T Consensus        63 l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k  142 (187)
T KOG3313|consen   63 LKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVK  142 (187)
T ss_pred             HHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHH
Confidence            3344456666666544   443  33489999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758           95 QIDEYTRLIASIKAQIKLVCEGICELLQL  123 (134)
Q Consensus        95 ~~~~l~~~l~~ik~~i~~v~~~i~ql~~~  123 (134)
                      .++.+.+++..+++|++.++..++++++.
T Consensus       143 ~l~~~~~DldfLrdQvTTtEVN~ArvYNw  171 (187)
T KOG3313|consen  143 SLDVLEEDLDFLRDQVTTTEVNMARVYNW  171 (187)
T ss_pred             HHHHHHHHHHHHHhhceeeeeeeeeeeec
Confidence            99999999999999999999999998876

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=1.6e-11  Score=103.77  Aligned_cols=104  Identities=16%  Similarity=0.331  Sum_probs=96.6

Q ss_pred             chHH-HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHH
Q 032758           10 DCFF-YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQR   88 (134)
Q Consensus        10 ~~~~-~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kr   88 (134)
                      -|.+ .=+|+..-..|+.+++.+.++.+..  ..++|||+|.-+|++|++..++.|+|.+|.|||.+++.-.|.+++++|
T Consensus        14 ~~~~ete~~~~v~~dye~~~erl~~~~kkL--s~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A~~I~~~R   91 (514)
T KOG3130|consen   14 RLEVETECRKKVDNDYEALRERLSTLPKKL--SYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQAVGIVEHR   91 (514)
T ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHhhhhc--ccceeeecccccccccceeeechhhhhhccchHhhhhHHHHHHHHHHH
Confidence            3555 6689999999999999999999887  789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           89 EDKIARQIDEYTRLIASIKAQIKLVCE  115 (134)
Q Consensus        89 i~~L~~~~~~l~~~l~~ik~~i~~v~~  115 (134)
                      .+..+++++++.+.+....++++..+.
T Consensus        92 ~~~~r~q~~~l~~~~~n~~~~vkf~~d  118 (514)
T KOG3130|consen   92 KEHVRKQIDDLKKVMKNFESRVKFTED  118 (514)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhccc
Confidence            999999999999999998888877655

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=98.20  E-value=1.3e-05  Score=56.74  Aligned_cols=78  Identities=19%  Similarity=0.290  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           23 GSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRL  102 (134)
Q Consensus        23 ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~  102 (134)
                      ++.+.+.++++|...+ ++.+++-++|+                     +||+.|.++|+..+++|++.++..++.+.+.
T Consensus        32 ~~~E~~~v~~eL~~l~-~d~~vyk~VG~---------------------vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~   89 (110)
T TIGR02338        32 QLKEAEKALEELERLP-DDTPVYKSVGN---------------------LLVKTDKEEAIQELKEKKETLELRVKTLQRQ   89 (110)
T ss_pred             HHHHHHHHHHHHHcCC-CcchhHHHhch---------------------hhheecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666543 44556666665                     9999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 032758          103 IASIKAQIKLVCEGICELLQ  122 (134)
Q Consensus       103 l~~ik~~i~~v~~~i~ql~~  122 (134)
                      +..++.++..++..++++.+
T Consensus        90 ~~~l~~~l~e~q~~l~~~~~  109 (110)
T TIGR02338        90 EERLREQLKELQEKIQEALA  109 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999988643

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=98.01  E-value=3.4e-05  Score=54.03  Aligned_cols=50  Identities=20%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             eEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           72 FHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        72 ~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      +||+.|.++|...+++|++.++..++.+.+.+..+..++......|..++
T Consensus        55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998865

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=97.95  E-value=3.8e-06  Score=59.02  Aligned_cols=94  Identities=16%  Similarity=0.268  Sum_probs=77.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      .-||++--+||+.|++-|+.++...+...+=+..++.++  .|.+.+.+.|=.-+|.+-.+++|.++++.++++|++.++
T Consensus         4 L~hWq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f--~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~   81 (99)
T PF13758_consen    4 LYHWQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDF--GGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQ   81 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhc--CcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            459999999999999999999763223444455566554  377788888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 032758           94 RQIDEYTRLIASIKAQ  109 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~  109 (134)
                      ++++.+++.+..-..+
T Consensus        82 ~Ni~tleKql~~aE~k   97 (99)
T PF13758_consen   82 QNIETLEKQLEAAENK   97 (99)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998765544

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=97.66  E-value=0.00043  Score=50.48  Aligned_cols=64  Identities=16%  Similarity=0.270  Sum_probs=57.6

Q ss_pred             CCCeeEEEecceeEEeecHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758           60 DTQHIFVDIGLGFHVEFTWSEALK-------------FISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL  123 (134)
Q Consensus        60 d~~kVlV~lG~g~~VE~~~~eA~~-------------~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~  123 (134)
                      +..+++|++|+|+||+.++.+..+             -++.-++.++++++.+.+.+..++.++..+...++++.+.
T Consensus        54 ~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~  130 (140)
T PRK03947         54 EGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE  130 (140)
T ss_pred             CCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999977665             7799999999999999999999999999999988887654

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=97.64  E-value=0.00015  Score=51.50  Aligned_cols=61  Identities=16%  Similarity=0.389  Sum_probs=55.5

Q ss_pred             CCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           40 TSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV  113 (134)
Q Consensus        40 ~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v  113 (134)
                      ++.+++|++|+|+|+...+++.             +..+++.+++++++++.+++.++++++.+..++..+...
T Consensus        67 ~~~~v~v~iG~~~~ve~~~~eA-------------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          67 DDDKVLVDLGTGVYVEKSLEEA-------------IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             CCCEEEEEecCCEEEEecHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4668999999999999998875             578999999999999999999999999999999988764

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=97.52  E-value=0.00028  Score=50.47  Aligned_cols=64  Identities=16%  Similarity=0.221  Sum_probs=58.5

Q ss_pred             CCCeeEEEecceeEEeecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758           60 DTQHIFVDIGLGFHVEFTWSEAL-------------KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL  123 (134)
Q Consensus        60 d~~kVlV~lG~g~~VE~~~~eA~-------------~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~  123 (134)
                      +...++|++|+|.||+-+.++..             .-++.-++.++++++.+.+.+..+...+......+.++...
T Consensus        46 ~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~  122 (126)
T TIGR00293        46 EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE  122 (126)
T ss_pred             CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999887             67899999999999999999999999999999999887654

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=97.35  E-value=0.0097  Score=40.68  Aligned_cols=57  Identities=16%  Similarity=0.377  Sum_probs=49.5

Q ss_pred             CeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           62 QHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE  119 (134)
Q Consensus        62 ~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q  119 (134)
                      .+|+..|| +.||+.|.+++.+.++++++.++..++++.+.+..+..++......+.+
T Consensus        45 ~~~y~~vG-~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~  101 (106)
T PF01920_consen   45 RKVYKSVG-KMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE  101 (106)
T ss_dssp             -EEEEEET-TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chhHHHHh-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555554 5699999999999999999999999999999999999999998887765

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=97.13  E-value=0.0017  Score=46.54  Aligned_cols=59  Identities=15%  Similarity=0.379  Sum_probs=41.4

Q ss_pred             CeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           41 SLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKL  112 (134)
Q Consensus        41 ~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~  112 (134)
                      ..+++||+|+|+|+...+++..             ..++.-++.++++++.+++.+.++++.+..+...+..
T Consensus        68 ~~~v~v~iG~g~~vE~~~~eA~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~  126 (129)
T cd00584          68 TDKVLVDLGTGYYVEKDLEEAI-------------EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE  126 (129)
T ss_pred             CCEEEEEcCCCEEEEecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777777777776644             4567777777777777777777777777777766654

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK01203 prefoldin subunit alpha; Provisional

Probab=96.95  E-value=0.0035  Score=46.11  Aligned_cols=63  Identities=10%  Similarity=0.237  Sum_probs=56.8

Q ss_pred             cCCCeeEEEecceeEEeecHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           59 PDTQHIFVDIGLGFHVEFTWSEALK-------------FISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        59 ~d~~kVlV~lG~g~~VE~~~~eA~~-------------~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      ++.+.|+|++|+|.||-=.+.+..+             -++++++.|+++++++++.+..++++++.+...+++|.
T Consensus        46 ~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         46 DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568899999999999988777665             46889999999999999999999999999999999976

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.0068  Score=45.34  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=57.1

Q ss_pred             CeeEEEecceeEEeecHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 032758           62 QHIFVDIGLGFHVEFTWSE-------------ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPA  125 (134)
Q Consensus        62 ~kVlV~lG~g~~VE~~~~e-------------A~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~~  125 (134)
                      ..++|+||+|.||.-...+             |.+-++.=++.|++++++|.+.+.++++.+..+...+.++.+..+
T Consensus        56 ~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q  132 (145)
T COG1730          56 KEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ  132 (145)
T ss_pred             ceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3899999999999988877             677889999999999999999999999999999999988876643

>PRK09343 prefoldin subunit beta; Provisional

Probab=96.48  E-value=0.018  Score=41.45  Aligned_cols=63  Identities=16%  Similarity=0.246  Sum_probs=54.2

Q ss_pred             CCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758           60 DTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL  123 (134)
Q Consensus        60 d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~  123 (134)
                      +..+|+-.|| .+||..|.++|++-+++|++.++..++.+.+....++.++...+..++++.+-
T Consensus        52 ~d~~VYk~VG-~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~  114 (121)
T PRK09343         52 DDTPIYKIVG-NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK  114 (121)
T ss_pred             CcchhHHHhh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445556666 47788899999999999999999999999999999999999999999887654

>PRK14011 prefoldin subunit alpha; Provisional

Probab=96.32  E-value=0.028  Score=41.92  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=48.2

Q ss_pred             CCCeeEEEecceeEEeecHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758           60 DTQHIFVDIGLGFHVEFTWSEALK-------------FISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL  123 (134)
Q Consensus        60 d~~kVlV~lG~g~~VE~~~~eA~~-------------~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~  123 (134)
                      +...++|+||+|.||--.+.+..+             -+++=++.++++++.+++....+...+......++++...
T Consensus        48 ~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~  124 (144)
T PRK14011         48 TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE  124 (144)
T ss_pred             CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788888888888877776544             4567777888888888888888888888887777776643

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.014  Score=42.33  Aligned_cols=60  Identities=13%  Similarity=0.269  Sum_probs=52.6

Q ss_pred             eeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758           63 HIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL  123 (134)
Q Consensus        63 kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~  123 (134)
                      .|+=.|| +++|..+.++|.+=+++|.+.|+.+++.|++....++.++..+...|+...+-
T Consensus        54 ~vYk~VG-~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~  113 (119)
T COG1382          54 PVYKKVG-NLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD  113 (119)
T ss_pred             HHHHHhh-hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4555566 57888999999999999999999999999999999999999999999886543

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=95.24  E-value=0.057  Score=37.81  Aligned_cols=62  Identities=16%  Similarity=0.255  Sum_probs=28.3

Q ss_pred             cCCCeeEEEecceeEEeecHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           59 PDTQHIFVDIGLGFHVEFTWSEALK-------------FISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL  120 (134)
Q Consensus        59 ~d~~kVlV~lG~g~~VE~~~~eA~~-------------~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql  120 (134)
                      +....++|++|+|.||.-.+.+..+             -++.=++.++++++.+++.+..++.++..+...+..+
T Consensus        36 ~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~  110 (120)
T PF02996_consen   36 KKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQL  110 (120)
T ss_dssp             -TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555544433322             2344455555555555555555555555555444443

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=91.55  E-value=0.77  Score=33.09  Aligned_cols=54  Identities=19%  Similarity=0.195  Sum_probs=48.3

Q ss_pred             eeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032758           71 GFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP  124 (134)
Q Consensus        71 g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~  124 (134)
                      .+.|.-+.+||..-+.+|++++...+..+.+.+..+..+....-+.+.++++..
T Consensus        60 pvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~  113 (120)
T KOG3478|consen   60 PVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAA  113 (120)
T ss_pred             chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467888999999999999999999999999999999999988888888877653

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=87.37  E-value=3.2  Score=30.31  Aligned_cols=44  Identities=27%  Similarity=0.442  Sum_probs=30.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL  120 (134)
Q Consensus        77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql  120 (134)
                      ++..|+++|..||+.+..++++.......+++++..+..-+.++
T Consensus        58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i  101 (126)
T PF07889_consen   58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQI  101 (126)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            45677888888888888777777766666666666665555443

The region featured in this family is approximately 100 amino acids long.

>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []

Probab=86.66  E-value=3.3  Score=35.25  Aligned_cols=52  Identities=19%  Similarity=0.321  Sum_probs=41.4

Q ss_pred             eEEeecHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcC
Q 032758           72 FHVEFTWSEALKFISQREDKIARQIDEYTRL----------IASIKAQIKLVCEGICELLQL  123 (134)
Q Consensus        72 ~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~----------l~~ik~~i~~v~~~i~ql~~~  123 (134)
                      +++|.+.+++.+.++.+++.+++.++++...          +.+++.++......+++++.+
T Consensus       234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~  295 (406)
T PF02388_consen  234 FLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL  295 (406)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999998888775          666666677777766666554

These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.

>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]

Probab=85.61  E-value=6.9  Score=27.35  Aligned_cols=66  Identities=11%  Similarity=0.209  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHH
Q 032758           12 FFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALK   83 (134)
Q Consensus        12 ~~~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~   83 (134)
                      |++|-+|-.+++-.+-++-+++|.+..    ++  -.++|++-...-.+.+.+.|.+|.|..+....+.-..
T Consensus        22 fyFli~RPQrKr~K~~~~ml~sL~kGD----~V--vT~gGi~G~V~~v~d~~v~I~l~~~~~i~~~k~aI~~   87 (97)
T COG1862          22 FYFLIIRPQRKRMKEHQELLNSLKKGD----EV--VTIGGIVGTVTKVGDDTVEIELGDGTKIKFEKEAIAT   87 (97)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHhccCCC----EE--EEcCCeEEEEEEEecCcEEEEECCCeEEEEEHHHHHh
Confidence            457788999999888888888888654    33  2456666665555555599999999999887665443

>PRK00736 hypothetical protein; Provisional

Probab=85.57  E-value=7.6  Score=25.17  Aligned_cols=43  Identities=9%  Similarity=0.159  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           79 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        79 ~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      +.-..|.++-++.|++.+-.-++.|..++.++..+.+.+....
T Consensus        11 E~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736         11 EIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445556666666666666666666666666666666665543

>PRK00295 hypothetical protein; Provisional

Probab=84.27  E-value=9  Score=24.83  Aligned_cols=44  Identities=14%  Similarity=0.191  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      ++.-..|.++-++.|++.+-.-++.+..++.++..+...+..+.
T Consensus        10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295         10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455666666667777666667777777777777766666654

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=84.25  E-value=5.3  Score=25.85  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      ++....|.++-++.|++.+-.-++.+..++.+++.+...++.+.
T Consensus         9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45566777788888888888888888888888888877777755

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK05585 yajC preprotein translocase subunit YajC; Validated

Probab=83.24  E-value=8.8  Score=27.05  Aligned_cols=67  Identities=9%  Similarity=0.196  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHH
Q 032758           11 CFFYLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALK   83 (134)
Q Consensus        11 ~~~~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~   83 (134)
                      +|+++.+|....+=.+.++.+++|+...    ++  =..+|+|-...=.+.+.|.+.++.|..++.....-..
T Consensus        30 i~yf~~~RpqkK~~k~~~~~~~~Lk~Gd----~V--vT~gGi~G~Vv~i~~~~v~lei~~g~~i~~~r~aI~~   96 (106)
T PRK05585         30 IFYFLIIRPQQKRQKEHKKMLSSLAKGD----EV--VTNGGIIGKVTKVSEDFVIIELNDDTEIKIQKSAIAA   96 (106)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhcCCCC----EE--EECCCeEEEEEEEeCCEEEEEECCCeEEEEEhHHhhh
Confidence            4445666777777777777777777553    33  3577888774433458999999999988887654333

>PRK09343 prefoldin subunit beta; Provisional

Probab=81.96  E-value=6.4  Score=28.15  Aligned_cols=82  Identities=17%  Similarity=0.258  Sum_probs=62.5

Q ss_pred             HhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           21 NAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYT  100 (134)
Q Consensus        21 ~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~  100 (134)
                      ..++.+++.+++.|...+ ++..++-.+|. +||+...++             +..++++-++|++.+++.++++.+.++
T Consensus        34 e~q~~e~~~~~~EL~~L~-~d~~VYk~VG~-vlv~qd~~e-------------~~~~l~~r~E~ie~~ik~lekq~~~l~   98 (121)
T PRK09343         34 DLELREINKALEELEKLP-DDTPIYKIVGN-LLVKVDKTK-------------VEKELKERKELLELRSRTLEKQEKKLR   98 (121)
T ss_pred             HHHHHHHHHHHHHHHcCC-CcchhHHHhhH-HHhhccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556677777777654 45567766664 666665554             345789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 032758          101 RLIASIKAQIKLVCEGI  117 (134)
Q Consensus       101 ~~l~~ik~~i~~v~~~i  117 (134)
                      +.+.+.+.++..+....
T Consensus        99 ~~l~e~q~~l~~ll~~~  115 (121)
T PRK09343         99 EKLKELQAKINEMLSKY  115 (121)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999998877654

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=81.08  E-value=5.7  Score=29.48  Aligned_cols=46  Identities=20%  Similarity=0.241  Sum_probs=41.6

Q ss_pred             ceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           70 LGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCE  115 (134)
Q Consensus        70 ~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~  115 (134)
                      .|+.||+|..+-.=.+....+.++..+..+.+++.++...++.+..
T Consensus        69 gGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~  114 (140)
T KOG4098|consen   69 GGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKK  114 (140)
T ss_pred             ccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999998888876654

>PRK00295 hypothetical protein; Provisional

Probab=80.24  E-value=13  Score=24.02  Aligned_cols=46  Identities=11%  Similarity=0.169  Sum_probs=37.1

Q ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           76 FTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        76 ~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      +|+++-+.-|+-|+.+.+..++.|++.+.+-..+|..+...++.|.
T Consensus         1 ~~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~   46 (68)
T PRK00295          1 MSLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI   46 (68)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778888888888888999999998888888888777776553

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=80.11  E-value=5.8  Score=25.03  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           86 SQREDKIARQIDEYTRLIASIKAQIKLVCEGICE  119 (134)
Q Consensus        86 ~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q  119 (134)
                      +.++..++..+..++++..+++..+..+.+.++.
T Consensus         6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~   39 (55)
T PF05377_consen    6 ENELPRIESSINTVKKENEEISESVEKIEENVKD   39 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444443

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	7e-20
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	2e-16

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii} Length = 151

 Score = 78.9 bits (194), Expect = 7e-20
 Identities = 26/106 (24%), Positives = 52/106 (49%)

Query: 26  DLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFI 85
            +R+ +ENL+K        LV +G+  +++  + D  +  V +G G+ VE +  EA+ F+
Sbjct: 44  TVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFL 103

Query: 86  SQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQE 131
            +R  +    I +    +A ++ +I  V     E+ Q  + TS + 
Sbjct: 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSMTSFKV 149

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 Length = 133

 Score = 69.2 bits (169), Expect = 2e-16
 Identities = 19/105 (18%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 19  TLNAGSSDLRKNIENLEK-NSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFT 77
            + A  S+L    + L          TLV +G+  +++A++ DT  + + +G G  ++  
Sbjct: 26  AVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKN 85

Query: 78  WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122
           + +A++ I  +++++   + +    + +I   +  +     ELL 
Sbjct: 86  FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.95
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.94
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	98.63
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	98.25
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	96.71
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	95.39
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	88.68
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	84.95
3gpv_A	148	Transcriptional regulator, MERR family; protein st	84.1

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.95  E-value=4.1e-27  Score=170.19  Aligned_cols=107  Identities=16%  Similarity=0.303  Sum_probs=101.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      .-.++.++.+|.++.++|+.|++  .++.+++||+|+++|++|+|+|+++|+||||+|||||+|.++|++|+++|++.++
T Consensus        24 ~~~l~~~i~e~~~~~e~l~~l~~--~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~  101 (133)
T 1fxk_C           24 MEAVRATISELEILEKTLSDIQG--KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELE  101 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHH
Confidence            45788999999999999999987  2588999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICELLQ  122 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~~  122 (134)
                      +.++++++++..++++++.+.+.++++++
T Consensus       102 ~~~~~l~~~l~~l~~~i~~~~~~l~~~~~  130 (133)
T 1fxk_C          102 STLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999764

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.94  E-value=2.7e-26  Score=169.57  Aligned_cols=113  Identities=22%  Similarity=0.327  Sum_probs=103.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      .-.++.|.+++.+++.+++.+.....++.+++||+|+++|++|+|+|+++|+||||+|||||+|.++|++|+++|++.++
T Consensus        32 ~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~  111 (151)
T 2zdi_C           32 LELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYD  111 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHH
Confidence            44567778888888888888876432578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICELLQLPAE  126 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~~~  126 (134)
                      +.++++++.+..++++++.+...|+++++..++
T Consensus       112 ~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~  144 (151)
T 2zdi_C          112 EAIKKTQGALAELEKRIGEVARKAQEVQQKQSM  144 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887555

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=98.63  E-value=1.5e-06  Score=60.24  Aligned_cols=60  Identities=15%  Similarity=0.294  Sum_probs=53.9

Q ss_pred             eEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032758           64 IFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP  124 (134)
Q Consensus        64 VlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~  124 (134)
                      |+..|| ++||+.|.++|...+++|++.++..++.+.+.+..++..+..+...++++.+-+
T Consensus        55 vy~~iG-~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~~  114 (117)
T 2zqm_A           55 VYKTVG-TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPP  114 (117)
T ss_dssp             EEEEET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             hHHHhh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            444444 999999999999999999999999999999999999999999999999977653

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=98.25  E-value=2.8e-05  Score=52.94  Aligned_cols=55  Identities=9%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             eEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           64 IFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE  119 (134)
Q Consensus        64 VlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q  119 (134)
                      |+..|| ++||+.|.++|...+++|++.++..++.+.+.+..++..+..+...+.+
T Consensus        50 vy~~iG-~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~  104 (107)
T 1fxk_A           50 VYKSSG-NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             EEEEET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444 8999999999999999999999999999999999999999999888765

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=96.71  E-value=0.004  Score=45.03  Aligned_cols=89  Identities=13%  Similarity=0.150  Sum_probs=69.9

Q ss_pred             HHHHHhhHHHHHHHHHHhh-cCC----------------CCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHH
Q 032758           17 YLTLNAGSSDLRKNIENLE-KNS----------------VTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWS   79 (134)
Q Consensus        17 ~~~~~~ey~el~~~I~~L~-~~~----------------~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~   79 (134)
                      -.....+|.++.++|+.++ ...                ....+++|++|+|+|+.-.+.+..             .-++
T Consensus        38 a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~-------------~~l~  104 (151)
T 2zdi_C           38 AKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAI-------------SFLE  104 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHH-------------HHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHH-------------HHHH
Confidence            4566788889999998887 331                124579999999999999888743             3467


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           80 EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC  118 (134)
Q Consensus        80 eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~  118 (134)
                      .=+++++++++.+++.++.+++.+..+...+......++
T Consensus       105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~  143 (151)
T 2zdi_C          105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS  143 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999988888887775543

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=95.39  E-value=0.048  Score=38.18  Aligned_cols=60  Identities=13%  Similarity=0.255  Sum_probs=33.7

Q ss_pred             CCeeEEEecceeEEeecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           61 TQHIFVDIGLGFHVEFTWSEAL-------------KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL  120 (134)
Q Consensus        61 ~~kVlV~lG~g~~VE~~~~eA~-------------~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql  120 (134)
                      +.+++|++|+|.||.-.+.+..             .-++.=++.++++++.++..+..++..+..+...+..+
T Consensus        49 ~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~  121 (133)
T 1fxk_C           49 GSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKL  121 (133)
T ss_dssp             TCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666665555432             22455555666666666666666666665555555544

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=88.68  E-value=1.8  Score=28.65  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             ecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           68 IGLGFHVEFTWSEALKFISQREDKIARQIDEYTRL  102 (134)
Q Consensus        68 lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~  102 (134)
                      .=++..||.+-|+|++++++---..+..++++.+.
T Consensus        49 af~dllveitkdeaiehier~rl~ykreie~l~~~   83 (99)
T 3aei_A           49 AFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKR   83 (99)
T ss_dssp             EETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999998777777777766655

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=84.95  E-value=3.1  Score=26.18  Aligned_cols=48  Identities=8%  Similarity=0.061  Sum_probs=37.4

Q ss_pred             EeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758           74 VEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  121 (134)
Q Consensus        74 VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~  121 (134)
                      +.++..||...+..|++.++.....-...+...+..+..+...++.|+
T Consensus        22 a~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~   69 (77)
T 3trt_A           22 AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLT   69 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999888877777777777766666666543

>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}

Probab=84.10  E-value=3.9  Score=28.88  Aligned_cols=51  Identities=16%  Similarity=0.200  Sum_probs=31.4

Q ss_pred             ecHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 032758           76 FTWSEALKFIS----------QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE  126 (134)
Q Consensus        76 ~~~~eA~~~l~----------kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~~~  126 (134)
                      +|+++...+++          .+...|++.++.+.+++..++.....+...+...++....
T Consensus        74 ~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~  134 (148)
T 3gpv_A           74 MPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS  134 (148)
T ss_dssp             CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            46777777765          3456667777777777777777777777777766655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1fxkc_	133	a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Met	1e-14

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 133

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 63.4 bits (154), Expect = 1e-14
 Identities = 19/104 (18%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 20  LNAGSSDLRKNIENLEK-NSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTW 78
           + A  S+L    + L          TLV +G+  +++A++ DT  + + +G G  ++  +
Sbjct: 27  VRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNF 86

Query: 79  SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122
            +A++ I  +++++   + +    + +I   +  +     ELL 
Sbjct: 87  EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.94
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	96.94
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	96.5

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.94  E-value=2.6e-26  Score=163.93  Aligned_cols=107  Identities=16%  Similarity=0.311  Sum_probs=102.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758           14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA   93 (134)
Q Consensus        14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~   93 (134)
                      +-+|+...++|..++++|+++++.  ++.+++||+|+|+|+||+|+++++|+|+||+|||||+|.++|++|+++|++.++
T Consensus        24 i~~l~~~~~e~~~~~~~L~~l~~~--~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~~~~eA~~~l~~ri~~l~  101 (133)
T d1fxkc_          24 MEAVRATISELEILEKTLSDIQGK--DGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELE  101 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTC--TTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC--CCCeEEEEcCCceEEEEEecCCCceEEEecCCeeeeecHHHHHHHHHHHHHHHH
Confidence            778999999999999999999865  477999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758           94 RQIDEYTRLIASIKAQIKLVCEGICELLQ  122 (134)
Q Consensus        94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~~  122 (134)
                      +.++++.+++..+++++..+...++++.+
T Consensus       102 ~~~~~l~~~~~~~~~~i~~l~~~~~~l~~  130 (133)
T d1fxkc_         102 STLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999764

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.94  E-value=0.014  Score=38.25  Aligned_cols=57  Identities=9%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             CeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           62 QHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE  119 (134)
Q Consensus        62 ~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q  119 (134)
                      .+|+=.|| |++|+.|.++|..-+++|++.++..++.+.+.+..++.++..+...++.
T Consensus        48 ~~vyk~vG-~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          48 AEVYKSSG-NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             CCEEEEET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHhc-chhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444454 6889999999999999999999999999999999999999999888775

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.50  E-value=0.0025  Score=43.14  Aligned_cols=36  Identities=11%  Similarity=0.254  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758           85 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL  120 (134)
Q Consensus        85 l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql  120 (134)
                      .++=++.++++++.+++.+..+..+++.+...+.++
T Consensus        86 ~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l  121 (133)
T d1fxkc_          86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKL  121 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555544443