Citrus Sinensis ID: 032760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKKK
Secondary Structure (PSIPRED)
cccccEEEEEcccccccccccEEEEEEEEccccccccHHHHHHHHHHHcccccccEEEEEcEEEcccccEEEEEEEEcccHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEHHcccHHHHHHHEEEEHHccccccccHHHHHHHHHHHHccccccEEEEEEEEEcccccccccEEEEEccHHHHHHcccHHHHHHcccHcccccHHHHHHHHHHHHHHcccccHHccccccccc
Coil and Loop (DISEMBL)
MADKAVTIRTRKFMTNRLLSRKQFVIDvlhpgranvsKAELKEKLARmydvkdpnsiFVFKfrthfgggkstgfgliydsvdsakkfepkyrlIRNGLDTKVEKSRKQMKERKNRAKKIRgvkktkasdaakkk
Flexible Loop (DISEMBL)
madkavtirtrkfmtnrllsrkqfvidvlhpgranvskaELKEKLArmydvkdpnsIFVFKFRTHFGGGKSTGFGLIYDSVdsakkfepkyrlirngldtkveksrkqmkerknrakkirgvkktkasdaakkk
Low Complexity Region (SEG)
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVkktkasdaakkk
Disordered region (IsUnstruct)
******TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRN**************************************
Disordered Region (DISOPRED)
***KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRL*****************************************
Disordered Region (DISEMBL)
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTK*********************************
Disordered Region (DISPRO)
***KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKV********************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q8LC83	133	40S ribosomal protein S24	yes	no	0.992	1.0	0.879	2e-64
Q9SS17	133	40S ribosomal protein S24	yes	no	0.992	1.0	0.924	1e-59
Q962Q6	132	40S ribosomal protein S24	N/A	no	0.985	1.0	0.661	4e-44
Q90YQ0	131	40S ribosomal protein S24	N/A	no	0.955	0.977	0.643	8e-42
O42387	132	40S ribosomal protein S24	N/A	no	0.947	0.962	0.653	7e-41
Q9W6X9	132	40S ribosomal protein S24	N/A	no	0.970	0.984	0.610	7e-40
Q75K27	126	40S ribosomal protein S24	yes	no	0.858	0.912	0.652	4e-39
O59865	134	40S ribosomal protein S24	yes	no	0.977	0.977	0.586	2e-38
P0CX32	135	40S ribosomal protein S24	yes	no	0.977	0.970	0.626	4e-38
P0CX31	135	40S ribosomal protein S24	yes	no	0.977	0.970	0.626	4e-38

>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2

 Score =  244 bits (622), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/133 (87%), Positives = 128/133 (96%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKK 133
           GVKKTKA D  KK
Sbjct: 121 GVKKTKAGDTKKK 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1

 Score =  228 bits (580), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/133 (92%), Positives = 131/133 (98%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKK 133
           GVKKTKA DA KK
Sbjct: 121 GVKKTKAGDAKKK 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1

 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 105/133 (78%), Gaps = 1/133 (0%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 59

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 60  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 119

Query: 121 GVKKTKASDAAKK 133
           G KK+K   AAKK
Sbjct: 120 GTKKSKVGAAAKK 132

Spodoptera frugiperda (taxid: 7108)

>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1

 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 5   AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64
           +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF F+T
Sbjct: 4   SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFKT 62

Query: 65  HFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKK 124
            FGGGK+TGF ++YDS+D AKK EPKYRL R+GL  K + SRKQ KERKNR KK+RG KK
Sbjct: 63  QFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRGTKK 122

Query: 125 TKASDAAKK 133
                A KK
Sbjct: 123 ASVGAAGKK 131

Ictalurus punctatus (taxid: 7998)

>sp|O42387|RS24_TAKRU 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1

 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 101/130 (77%), Gaps = 3/130 (2%)

Query: 5   AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64
            VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT
Sbjct: 4   TVTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFRT 62

Query: 65  HFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKK 124
            FGGGK+TGF ++YDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG K 
Sbjct: 63  QFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRGTK- 121

Query: 125 TKASDAAKKK 134
            KAS  A KK
Sbjct: 122 -KASVGASKK 130

Takifugu rubripes (taxid: 31033)

>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1

 Score =  162 bits (409), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 98/131 (74%), Gaps = 1/131 (0%)

Query: 3   DKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKF 62
           +  VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF F
Sbjct: 2   NDTVTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGF 60

Query: 63  RTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122
           RT FGGGK+TGF ++YDS+D AKK EPK+RL  +GL  K + SRKQ  ER+NR KK+R +
Sbjct: 61  RTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSI 120

Query: 123 KKTKASDAAKK 133
           KK     A KK
Sbjct: 121 KKASVGAAGKK 131

Oryzias latipes (taxid: 8090)

>sp|Q75K27|RS24_DICDI 40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 95/115 (82%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V DP +IF+F
Sbjct: 1   MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 115
            F+T FGGGKSTGFGLIYD+++ AKK+EPKYRL R GL TK + SRKQ KE+KNR
Sbjct: 61  GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNR 115

Dictyostelium discoideum (taxid: 44689)

>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps24b PE=2 SV=3

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 99/133 (74%), Gaps = 2/133 (1%)

Query: 3   DKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKF 62
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D   +  F  
Sbjct: 2   SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGL 60

Query: 63  RTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 121
           RTHFGGG+STGF LIYDS +S KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct: 61  RTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFG 120

Query: 122 VKKTKASDAAKKK 134
             K  A   +K++
Sbjct: 121 TGKRLAKRKSKQQ 133

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0CX32|RS24B_YEAST 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24B PE=1 SV=1

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 103/134 (76%), Gaps = 3/134 (2%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           M+D AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +++ VF
Sbjct: 1   MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKI 119
            FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI
Sbjct: 59  GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKI 118

Query: 120 RGVKKTKASDAAKK 133
            G  K  A   A++
Sbjct: 119 FGTGKRLAKKVARR 132

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P0CX31|RS24A_YEAST 40S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24A PE=1 SV=1

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 103/134 (76%), Gaps = 3/134 (2%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           M+D AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +++ VF
Sbjct: 1   MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKI 119
            FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI
Sbjct: 59  GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKI 118

Query: 120 RGVKKTKASDAAKK 133
            G  K  A   A++
Sbjct: 119 FGTGKRLAKKVARR 132

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
358248670	137	uncharacterized protein LOC100802918 [Gl	0.985	0.963	0.939	1e-66
351727795	137	uncharacterized protein LOC100499852 [Gl	0.985	0.963	0.939	1e-66
307136061	137	40S ribosomal protein s24 [Cucumis melo	0.985	0.963	0.946	2e-66
357441493	137	40S ribosomal protein S24 [Medicago trun	0.985	0.963	0.939	3e-66
388491940	137	unknown [Lotus japonicus]	0.985	0.963	0.924	7e-66
351726138	137	uncharacterized protein LOC100499673 [Gl	0.985	0.963	0.939	8e-66
449442901	137	PREDICTED: 40S ribosomal protein S24-2-l	0.985	0.963	0.946	9e-66
449449533	137	PREDICTED: 40S ribosomal protein S24-2-l	0.985	0.963	0.946	2e-65
351721636	137	uncharacterized protein LOC100305568 [Gl	0.985	0.963	0.924	3e-65
388503160	137	unknown [Medicago truncatula]	0.985	0.963	0.924	3e-65

>gi|358248670|ref|NP_001240176.1| uncharacterized protein LOC100802918 [Glycine max] gi|255637268|gb|ACU18964.1| unknown [Glycine max]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/132 (93%), Positives = 132/132 (100%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLARMY+VKDPN++FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYD+V++AKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKASDAAK
Sbjct: 121 GVKKTKASDAAK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727795|ref|NP_001236917.1| uncharacterized protein LOC100499852 [Glycine max] gi|255627123|gb|ACU13906.1| unknown [Glycine max]

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/132 (93%), Positives = 132/132 (100%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLARMYDVKDPN++FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYD++++AKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDTMENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKASDAAK
Sbjct: 121 GVKKTKASDAAK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136061|gb|ADN33912.1| 40S ribosomal protein s24 [Cucumis melo subsp. melo]

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/132 (94%), Positives = 131/132 (99%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+YDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSV++AKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKASDAAK
Sbjct: 121 GVKKTKASDAAK 132

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441493|ref|XP_003591024.1| 40S ribosomal protein S24 [Medicago truncatula] gi|217075254|gb|ACJ85987.1| unknown [Medicago truncatula] gi|355480072|gb|AES61275.1| 40S ribosomal protein S24 [Medicago truncatula] gi|388501578|gb|AFK38855.1| unknown [Medicago truncatula] gi|388521723|gb|AFK48923.1| unknown [Medicago truncatula]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/132 (93%), Positives = 131/132 (99%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLAR+YDVKDPN++FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSV++AKK+EPKYRL+RNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKA DAAK
Sbjct: 121 GVKKTKAGDAAK 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491940|gb|AFK34036.1| unknown [Lotus japonicus]

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 122/132 (92%), Positives = 132/132 (100%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKEKLAR+YDVKDPN++FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDS+++AKK+EPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKASDAAK
Sbjct: 121 GVKKTKASDAAK 132

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726138|ref|NP_001238140.1| uncharacterized protein LOC100499673 [Glycine max] gi|255625693|gb|ACU13191.1| unknown [Glycine max]

 Score =  254 bits (649), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 124/132 (93%), Positives = 130/132 (98%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKL RMYDVKD N++FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSV++AKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKASDAAK
Sbjct: 121 GVKKTKASDAAK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442901|ref|XP_004139219.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus] gi|449482936|ref|XP_004156448.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus]

 Score =  254 bits (649), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 125/132 (94%), Positives = 130/132 (98%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+YDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSV++AKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKASDAAK
Sbjct: 121 GVKKTKASDAAK 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449533|ref|XP_004142519.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus] gi|449518360|ref|XP_004166210.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/132 (94%), Positives = 130/132 (98%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+YDVKD N+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSV++AKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKASDAAK
Sbjct: 121 GVKKTKASDAAK 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721636|ref|NP_001237216.1| uncharacterized protein LOC100305568 [Glycine max] gi|255625937|gb|ACU13313.1| unknown [Glycine max]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/132 (92%), Positives = 130/132 (98%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKE+L RMYDVKD N++FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKERLGRMYDVKDTNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSV++AKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKASDAAK
Sbjct: 121 GVKKTKASDAAK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503160|gb|AFK39646.1| unknown [Medicago truncatula]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/132 (92%), Positives = 130/132 (98%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLAR+YDVKDPN++FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFR HFGGGKSTGFGLIYDSV++AKK+EPKYRL+RNGLDTKVEKSRKQM+ERKNRAKKIR
Sbjct: 61  KFRAHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMEERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 132
           GVKKTKA DAAK
Sbjct: 121 GVKKTKAGDAAK 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2114830	133	AT3G04920 [Arabidopsis thalian	0.910	0.917	0.934	1.4e-57
TAIR|locus:2143784	133	AT5G28060 [Arabidopsis thalian	0.910	0.917	0.893	1.4e-55
UNIPROTKB|F1NF89	130	RPS24 "40S ribosomal protein S	0.858	0.884	0.724	8.7e-40
UNIPROTKB|Q56JU9	131	RPS24 "40S ribosomal protein S	0.858	0.877	0.724	8.7e-40
UNIPROTKB|E2QWF8	132	RPS24 "40S ribosomal protein S	0.858	0.871	0.724	8.7e-40
UNIPROTKB|F1PH35	132	RPS24 "40S ribosomal protein S	0.858	0.871	0.724	8.7e-40
UNIPROTKB|H9GWG6	132	RPS24 "40S ribosomal protein S	0.858	0.871	0.724	8.7e-40
UNIPROTKB|J9NRJ3	130	RPS24 "40S ribosomal protein S	0.858	0.884	0.724	8.7e-40
UNIPROTKB|J9P0U8	132	RPS24 "40S ribosomal protein S	0.858	0.871	0.724	8.7e-40
UNIPROTKB|L7N0B1	132	RPS24 "Uncharacterized protein	0.858	0.871	0.724	8.7e-40

TAIR|locus:2114830 AT3G04920 [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 114/122 (93%), Positives = 122/122 (100%)

Query:     1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
             MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IFVF
Sbjct:     1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query:    61 KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
             KFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct:    61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query:   121 GV 122
             GV
Sbjct:   121 GV 122

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2143784 AT5G28060 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 109/122 (89%), Positives = 120/122 (98%)

Query:     1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
             MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IF F
Sbjct:     1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query:    61 KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
             KFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct:    61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query:   121 GV 122
             GV
Sbjct:   121 GV 122

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005730 "nucleolus" evidence=IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|F1NF89 RPS24 "40S ribosomal protein S24" [Gallus gallus (taxid:9031)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 84/116 (72%), Positives = 96/116 (82%)

Query:     6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
             VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
             FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q56JU9 RPS24 "40S ribosomal protein S24" [Bos taurus (taxid:9913)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 84/116 (72%), Positives = 96/116 (82%)

Query:     6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
             VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
             FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QWF8 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 84/116 (72%), Positives = 96/116 (82%)

Query:     6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
             VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
             FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PH35 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 84/116 (72%), Positives = 96/116 (82%)

Query:     6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
             VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
             FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|H9GWG6 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 84/116 (72%), Positives = 96/116 (82%)

Query:     6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
             VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
             FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9NRJ3 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 84/116 (72%), Positives = 96/116 (82%)

Query:     6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
             VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
             FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P0U8 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 84/116 (72%), Positives = 96/116 (82%)

Query:     6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
             VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
             FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|L7N0B1 RPS24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 84/116 (72%), Positives = 96/116 (82%)

Query:     6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
             VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
             FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RAQ8	RS24_PONAB	No assigned EC number	0.6744	0.9552	0.9770	yes	no
Q56JU9	RS24_BOVIN	No assigned EC number	0.6744	0.9552	0.9770	yes	no
Q4R5H5	RS24_MACFA	No assigned EC number	0.6666	0.9552	0.9770	N/A	no
Q90YQ0	RS24_ICTPU	No assigned EC number	0.6434	0.9552	0.9770	N/A	no
O59865	RS24B_SCHPO	No assigned EC number	0.5864	0.9776	0.9776	yes	no
O42387	RS24_TAKRU	No assigned EC number	0.6538	0.9477	0.9621	N/A	no
Q9W6X9	RS24_ORYLA	No assigned EC number	0.6106	0.9701	0.9848	N/A	no
Q8LC83	RS242_ARATH	No assigned EC number	0.8796	0.9925	1.0	yes	no
P14249	RS24_MUCCL	No assigned EC number	0.632	0.9253	0.8378	N/A	no
Q9SS17	RS241_ARATH	No assigned EC number	0.9248	0.9925	1.0	yes	no
P02377	RS24_XENLA	No assigned EC number	0.6666	0.9552	0.9696	N/A	no
P62847	RS24_HUMAN	No assigned EC number	0.6692	0.9626	0.9699	yes	no
Q75K27	RS24_DICDI	No assigned EC number	0.6521	0.8582	0.9126	yes	no
P62848	RS24_MESAU	No assigned EC number	0.6692	0.9626	0.9699	N/A	no
P62849	RS24_MOUSE	No assigned EC number	0.6692	0.9626	0.9699	yes	no
Q962Q6	RS24_SPOFR	No assigned EC number	0.6616	0.9850	1.0	N/A	no
P0CX32	RS24B_YEAST	No assigned EC number	0.6268	0.9776	0.9703	yes	no
P0CX31	RS24A_YEAST	No assigned EC number	0.6268	0.9776	0.9703	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.5890.1	RecName- Full=40S ribosomal protein S24; (133 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)			•	•	•	•			0.620
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)			•	•	•	•			0.618
	estExt_fgenesh4_pm.C_LG_IX0111	SubName- Full=Putative uncharacterized protein; (113 aa)			•	•	•	•			0.612
	estExt_fgenesh4_pm.C_660004	SubName- Full=Putative uncharacterized protein; (114 aa)			•	•	•	•			0.600
	estExt_Genewise1_v1.C_LG_XVIII3410	hypothetical protein (160 aa)			•	•	•				0.574
	estExt_fgenesh4_kg.C_LG_II0054	SubName- Full=Putative uncharacterized protein; (159 aa)			•	•	•				0.560
	grail3.0040004901	SubName- Full=Putative uncharacterized protein; (159 aa)			•	•	•				0.558
	gw1.70.235.1	SubName- Full=Putative uncharacterized protein; (248 aa)			•	•	•				0.549
	gw1.X.5793.1	SubName- Full=Putative uncharacterized protein; (250 aa)			•	•	•				0.545
	gw1.VIII.2707.1	SubName- Full=Putative uncharacterized protein; (253 aa)			•	•	•				0.536

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
PTZ00071	132	PTZ00071, PTZ00071, 40S ribosomal protein S24; Pro	8e-53
pfam01282	83	pfam01282, Ribosomal_S24e, Ribosomal protein S24e	6e-36
COG2004	107	COG2004, RPS24A, Ribosomal protein S24E [Translati	1e-34
PRK01178	99	PRK01178, rps24e, 30S ribosomal protein S24e; Revi	1e-17
pfam01231	397	pfam01231, IDO, Indoleamine 2,3-dioxygenase	0.004

>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional

 Score =  162 bits (412), Expect = 8e-53
 Identities = 77/128 (60%), Positives = 96/128 (75%)

Query: 5   AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64
             T+RTRKF+ N LL+RKQFV++VLHPG+  VSK ++KEKLA+ Y V D  +I +F F+T
Sbjct: 5   EFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKT 64

Query: 65  HFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKK 124
            FGGGK+TGFGLIYD++ + KKFEPKYRLIR GL  K +  RK  KE KNR KK+RG +K
Sbjct: 65  KFGGGKTTGFGLIYDNLAALKKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEK 124

Query: 125 TKASDAAK 132
           TK S   K
Sbjct: 125 TKVSGKKK 132

Length = 132

>gnl|CDD|216409 pfam01282, Ribosomal_S24e, Ribosomal protein S24e

 Score =  118 bits (297), Expect = 6e-36
 Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 24  FVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDS 83
            V +VLHPGRA  S+ E++EKLA+M  V D + + VF F+T FGGGKSTGF LIYDS+++
Sbjct: 1   MVFEVLHPGRATPSRKEVREKLAKMLKV-DKDLVVVFGFKTEFGGGKSTGFALIYDSLEA 59

Query: 84  AKKFEPKYRLIRNGLDTKVEKSRK 107
           AKKFEPKYRL RNGL  K E  R+
Sbjct: 60  AKKFEPKYRLERNGLAEKKEAGRE 83

Length = 83

>gnl|CDD|224915 COG2004, RPS24A, Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

 Score =  115 bits (291), Expect = 1e-34
 Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 5   AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64
           A+ I+  +   N LL RK+ V  V H G    S+ E++EKLA M    D   + V   +T
Sbjct: 1   AMEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLGA-DKELVVVDYIKT 59

Query: 65  HFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAK 117
            FG G+S G+  IYDSV+ AKK EP+Y L RNG        R++ +E +NR K
Sbjct: 60  EFGKGRSKGYAKIYDSVERAKKIEPEYILERNGG-----AERQEAEEAENRKK 107

Length = 107

>gnl|CDD|179239 PRK01178, rps24e, 30S ribosomal protein S24e; Reviewed

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFG 75
          N LL R++   +V H G A  S+ ++++KLA M +  D   + V K +T +G GKS G+ 
Sbjct: 11 NPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNA-DKELVVVRKIKTEYGMGKSKGYA 69

Query: 76 LIYDSVDSAKKFEPKYRLIRNGL 98
           +YD  + A+K EPKY L RN +
Sbjct: 70 KVYDDKERARKIEPKYILERNKI 92

Length = 99

>gnl|CDD|216378 pfam01231, IDO, Indoleamine 2,3-dioxygenase

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 40  ELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGF-----GLIYDSVD 82
            L + L RM++  DP  +F    R +  G K+        GLIY+ V 
Sbjct: 203 RLGKLLERMHEKCDPE-VFYHVIRPYLAGWKNMADAGLPNGLIYEGVK 249

Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PTZ00071	132	40S ribosomal protein S24; Provisional	100.0
KOG3424	132	consensus 40S ribosomal protein S24 [Translation,	100.0
PRK01178	99	rps24e 30S ribosomal protein S24e; Reviewed	100.0
COG2004	107	RPS24A Ribosomal protein S24E [Translation, riboso	100.0
PF01282	84	Ribosomal_S24e: Ribosomal protein S24e; InterPro:	100.0

>PTZ00071 40S ribosomal protein S24; Provisional

Probab=100.00  E-value=1.1e-55  Score=331.86  Aligned_cols=127  Identities=60%  Similarity=0.955  Sum_probs=122.3

Q ss_pred             ceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHH
Q 032760            5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSA   84 (134)
Q Consensus         5 ~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~   84 (134)
                      +|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||+++|+|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus         5 ~~~ir~rk~~~NpLL~RkE~~~~v~Hpg~~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~IYds~e~~   84 (132)
T PTZ00071          5 EFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYDNLAAL   84 (132)
T ss_pred             cEEEEEeeeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEEECCHHHH
Confidence            69999999999999999999999999999999999999999999994499999999999999999999999999999999


Q ss_pred             HhcCCchhhhhcCCccccccchhhHHHHhhhccccccccccccchhh
Q 032760           85 KKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAA  131 (134)
Q Consensus        85 kk~Epk~~l~Rn~~~e~~k~~rk~~ke~kn~~kk~~Gt~k~~~~~~~  131 (134)
                      ++|||+|+|+||++.+..+.+|+|+||.||++||+|||+++++..++
T Consensus        85 kk~Epk~~l~Rngl~~~~~~~rk~rke~knr~kk~rg~~k~k~~~~~  131 (132)
T PTZ00071         85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKK  131 (132)
T ss_pred             HhhCchheeeecCccccCccchHHHHHHHhhhhhhccchhhhhhhcc
Confidence            99999999999999998888999999999999999999999986544

>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-56  Score=330.72  Aligned_cols=131  Identities=74%  Similarity=1.109  Sum_probs=128.1

Q ss_pred             CCCcceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCC
Q 032760            1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDS   80 (134)
Q Consensus         1 m~~~~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds   80 (134)
                      |+| +|||+|++||+|+||+|+||++||+|||.|+||++||+|+||+||.+ ++|+||||+|+|+||+|+|+|||+||||
T Consensus         1 ~~~-~vtirtrk~~tNrLL~RKqmvvdvlHPG~a~vsK~EirEKla~mYkt-~~d~V~vfgfrt~~GggkstgfalIYds   78 (132)
T KOG3424|consen    1 MSD-AVTIRTRKFMTNRLLSRKQMVVDVLHPGKANVSKTEIREKLAKMYKT-TPDAVFVFGFRTHFGGGKSTGFALIYDS   78 (132)
T ss_pred             CCc-cEEEehhhhhhhhhhhhhheeEEEecCCCCCCCHHHHHHHHHHHhcC-CcceEEEEEeeeccCCcccceeeeeeeh
Confidence            777 89999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHhcCCchhhhhcCCccccccchhhHHHHhhhccccccccccccchhhhc
Q 032760           81 VDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKK  133 (134)
Q Consensus        81 ~e~~kk~Epk~~l~Rn~~~e~~k~~rk~~ke~kn~~kk~~Gt~k~~~~~~~k~  133 (134)
                      +|+|++|||+|+|+|+|+.|..+++|+||||++|+++|+|||.|++++.++++
T Consensus        79 ve~akkfEpkyrl~r~gl~e~~kt~RkqrKerknr~kKi~Gt~K~~~~~~~k~  131 (132)
T KOG3424|consen   79 VEYAKKFEPKYRLVRLGLAEKIKTSRKQRKERKNRMKKIFGTGKRKAKKAKKK  131 (132)
T ss_pred             HHHHHhcCcceeeeecccccccccHHHHHHHHhhccchheeHHHHHhhhhhcc
Confidence            99999999999999999999998899999999999999999999999988875

>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed

Probab=100.00  E-value=1.4e-42  Score=250.12  Aligned_cols=94  Identities=36%  Similarity=0.610  Sum_probs=91.4

Q ss_pred             EEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHhc
Q 032760            8 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKF   87 (134)
Q Consensus         8 i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk~   87 (134)
                      |.|.++.+||||+|+||+|+|+|||.|||||.||+++||+||++ |+|+|||++|+|+||+|+|+|||+||||.|+|++|
T Consensus         3 i~I~~~~~N~LL~Rke~~~~v~h~g~~tpsr~eirekLa~~~~~-~~~~vvv~~~~t~fG~g~s~G~a~IYds~e~~kk~   81 (99)
T PRK01178          3 IKIISDKENPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNA-DKELVVVRKIKTEYGMGKSKGYAKVYDDKERARKI   81 (99)
T ss_pred             EEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCc-CCCEEEEEccCccCCCceEEEEEEEECCHHHHHhh
Confidence            67889999999999999999999999999999999999999998 99999999999999999999999999999999999


Q ss_pred             CCchhhhhcCCcccc
Q 032760           88 EPKYRLIRNGLDTKV  102 (134)
Q Consensus        88 Epk~~l~Rn~~~e~~  102 (134)
                      ||+|+|.||++.+++
T Consensus        82 Epk~~l~Rn~~~~~~   96 (99)
T PRK01178         82 EPKYILERNKIEEEE   96 (99)
T ss_pred             CchheeeecCccccc
Confidence            999999999998764

>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.1e-42  Score=249.55  Aligned_cols=104  Identities=42%  Similarity=0.633  Sum_probs=99.6

Q ss_pred             eEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHH
Q 032760            6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAK   85 (134)
Q Consensus         6 v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~k   85 (134)
                      ++|.|.++++||||+|+||+|+|+|||++||||.||+++||++|++ |+++|||++|+|+||+|+|+|||+||||.+.|+
T Consensus         2 ~ei~I~~~r~NpLL~RkEi~~~v~h~g~~TPSr~evrekla~~l~~-d~e~VvV~~ikt~fG~~~s~g~akIY~s~e~~~   80 (107)
T COG2004           2 MEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLGA-DKELVVVDYIKTEFGKGRSKGYAKIYDSVERAK   80 (107)
T ss_pred             ceEEeehcccCccccceEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CcceEEEEehhhhcCCcceeEEEEEECCHHHHH
Confidence            6899999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             hcCCchhhhhcCCccccccchhhHHHHhhh
Q 032760           86 KFEPKYRLIRNGLDTKVEKSRKQMKERKNR  115 (134)
Q Consensus        86 k~Epk~~l~Rn~~~e~~k~~rk~~ke~kn~  115 (134)
                      +|||+|+|.||++     ..+.+.+|++++
T Consensus        81 ~iEp~yiL~Rn~~-----~~~~~~eE~e~r  105 (107)
T COG2004          81 KIEPEYILERNGG-----AERQEAEEAENR  105 (107)
T ss_pred             hcCcceEEEeccc-----hhhhhhHhhhcc
Confidence            9999999999998     456777787777

>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.6e-35  Score=206.23  Aligned_cols=83  Identities=60%  Similarity=1.016  Sum_probs=74.6

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHhcCCchhhhhcCCccccc
Q 032760           24 FVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVE  103 (134)
Q Consensus        24 i~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk~Epk~~l~Rn~~~e~~k  103 (134)
                      |+|+|+|||.|||||+||+++||+|||+ |+|+|||++|+|+||++.|+|||+||||+|+|++|||+|+|.||++.++..
T Consensus         1 ~~~~v~h~g~~Tpsr~ei~~klA~~~~~-~~~~ivv~~~~t~fG~~~s~g~a~IYd~~e~~kk~Ep~~~l~R~~~~e~~~   79 (84)
T PF01282_consen    1 MVFEVLHPGKPTPSRKEIREKLAAMLNV-DPDLIVVFGIKTEFGGGKSTGFAKIYDSAEALKKFEPKYRLKRNGLEEKKE   79 (84)
T ss_dssp             EEEEEE-SSSSS--HHHHHHHHHHHHTS-TGCCEEEEEEEESSSSSEEEEEEEEESSHHHHHHHSTHHHHHHTTSSSS-S
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHhCC-CCCeEEEeccEecCCCceEEEEEEEeCCHHHHHHhCcHHHhHhcCcccccc
Confidence            6899999999999999999999999999 999999999999999999999999999999999999999999999988754


Q ss_pred             -cchh
Q 032760          104 -KSRK  107 (134)
Q Consensus       104 -~~rk  107 (134)
                       .+|+
T Consensus        80 ~~~r~   84 (84)
T PF01282_consen   80 KEGRK   84 (84)
T ss_dssp             -S-HH
T ss_pred             ccccC
Confidence             4553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
3iz6_U	138	Localization Of The Small Subunit Ribosomal Protein		8e-58
3izb_U	135	Localization Of The Small Subunit Ribosomal Protein		2e-38
2xzm_P	149	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-21
3zey_T	137	High-resolution Cryo-electron Microscopy Structure		2e-19
3j20_V	99	Promiscuous Behavior Of Proteins In Archaeal Riboso		8e-12
2v94_A	107	Crystal Structure Of P. Abyssi Rps24 Length = 107		2e-09
1xn9_A	101	Solution Structure Of Methanosarcina Mazei Protein		5e-04

>pdb|3IZ6|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 138

Iteration: 1
 Score =  218 bits (555), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 118/126 (93%), Gaps = 4/126 (3%)
Query: 1   MADK----AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNS 56
           MAD     AVT+RTRKFMTNRLLSRKQFV++VLHPGRANVSKA+LKEKLA++Y+VKD N 
Sbjct: 1   MADTKTAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNC 60
Query: 57  IFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRA 116
           IFVFKFRTHFGGGKSTGFGLIYD++D+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNRA
Sbjct: 61  IFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRA 120
Query: 117 KKIRGV 122
           KKIRGV
Sbjct: 121 KKIRGV 126

>pdb|3IZB|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 135

Iteration: 1
 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 98/122 (80%), Gaps = 3/122 (2%)
Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
           M+D AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +++ VF
Sbjct: 1   MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58
Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKI 119
            FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI
Sbjct: 59  GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKI 118
Query: 120 RG 121
            G
Sbjct: 119 FG 120

>pdb|2XZM|P Chain P, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 149

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 5   AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64
            + IRT+K + N LLSR+Q  +DVLHP     SK +++E+LA+   V D  ++ V+ F T
Sbjct: 2   TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFST 60
Query: 65  HFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
            +GGGKSTGF L+YD+     K+EP YRL +  +  +   +R+  KE K + K+  G
Sbjct: 61  QYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSG 117

>pdb|3ZEY|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 137

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAEL-KEKLARMYDVKDPNSIFVFKFRT 64
           VT+RT +F  N+LL+RKQFV++V HPG      A+L + +LA +Y V D N I VF F+T
Sbjct: 10  VTVRTSQFKVNKLLNRKQFVVEVNHPGWCGTVPAKLIRNRLASLYKVADENQISVFGFKT 69
Query: 65  HFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 121
            FGGGK+TGFGLIYD + + K+ EP YR  R G+  K   +RK +KER+NR KKIRG
Sbjct: 70  KFGGGKTTGFGLIYDDLAAMKRIEPNYRKARLGMGKKKLPARKSVKERRNRNKKIRG 126

>pdb|3J20|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 99

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
           + IR ++   N+L+ RK+   ++ HPG    S+ ++K KL  M D+ +P +  +   R++
Sbjct: 1   MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSY 59
Query: 66  FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVE 103
           FG   S G+   YDS +     EP+Y LIR+GL  K E
Sbjct: 60  FGSYISKGYAKAYDSKERMLYIEPEYILIRDGLIEKKE 97

>pdb|2V94|A Chain A, Crystal Structure Of P. Abyssi Rps24 Length = 107

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFG 67
           I+  +   N+L+ RK+   ++ HPG    S+ ++K KL    D+ +P +  +   R++FG
Sbjct: 11  IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAXLDL-NPETTVIQYIRSYFG 69
Query: 68  GGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVE 103
             KS G+   Y   D     EP+Y LIR+G+  K E
Sbjct: 70  SYKSKGYAKYYYDKDRXLYIEPEYILIRDGIIEKKE 105

>pdb|1XN9|A Chain A, Solution Structure Of Methanosarcina Mazei Protein Rps24e: The Northeast Structural Genomics Consortium Target Mar11 Length = 101

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK-FRTHFGGGKSTGF 74
          N LL+R++    V + G +  S+ +++ KLA M +   P  + V +  +T +G  +S G+
Sbjct: 11 NPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA--PLELLVIQRIKTEYGMQESKGY 67
Query: 75 GLIYDSVDSAKKFEPKYRLIRNGL 98
            +Y+  D  K+ E +Y L RN +
Sbjct: 68 AKLYEDADRMKQVEQEYVLKRNAV 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	6e-51
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	9e-48
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	9e-46
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	5e-41
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	2e-39
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	2e-37
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	7e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 138

 Score =  157 bits (398), Expect = 6e-51
 Identities = 114/134 (85%), Positives = 125/134 (93%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60
               AVT+RTRKFMTNRLLSRKQFV++VLHPGRANVSKA+LKEKLA++Y+VKD N IFVF
Sbjct: 5   KTAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVF 64

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYD++D+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNRAKKIR
Sbjct: 65  KFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIR 124

Query: 121 GVKKTKASDAAKKK 134
           GVKKTKA DA KKK
Sbjct: 125 GVKKTKAGDAGKKK 138

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y Length = 135

 Score =  149 bits (377), Expect = 9e-48
 Identities = 82/131 (62%), Positives = 100/131 (76%), Gaps = 2/131 (1%)

Query: 5   AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64
           AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +++ VF FRT
Sbjct: 4   AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRT 62

Query: 65  HFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRGVK 123
            FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI G  
Sbjct: 63  QFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTG 122

Query: 124 KTKASDAAKKK 134
           K  A   A++ 
Sbjct: 123 KRLAKKVARRN 133

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P Length = 149

 Score =  144 bits (365), Expect = 9e-46
 Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 1/130 (0%)

Query: 5   AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64
            + IRT+K + N LLSR+Q  +DVLHP     SK +++E+LA+   V D  ++ V+ F T
Sbjct: 2   TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFST 60

Query: 65  HFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKK 124
            +GGGKSTGF L+YD+     K+EP YRL +  +  +   +R+  KE K + K+  G   
Sbjct: 61  QYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAI 120

Query: 125 TKASDAAKKK 134
           TK     K  
Sbjct: 121 TKLLSEKKGD 130

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3 Length = 107

 Score =  131 bits (331), Expect = 5e-41
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 5   AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64
            + I+  +   N+L+ RK+   ++ HPG    S+ ++K KL  M D+ +P +  +   R+
Sbjct: 8   EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRS 66

Query: 65  HFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVE 103
           +FG  KS G+   Y   D     EP+Y LIR+G+  K E
Sbjct: 67  YFGSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKE 105

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3 Length = 101

 Score =  126 bits (319), Expect = 2e-39
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFG 67
           I+  K   N LL+R++    V + G +  S+ +++ KLA M +      + + + +T +G
Sbjct: 3   IKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYG 60

Query: 68  GGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRK 107
             +S G+  +Y+  D  K+ E +Y L RN +     +  +
Sbjct: 61  MQESKGYAKLYEDADRMKQVEQEYVLKRNAVPGSETEGEE 100

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3 Length = 98

 Score =  121 bits (306), Expect = 2e-37
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFG 67
           +  ++   N +L RK+    +        S+ E+KE +A+   V D   + V   +   G
Sbjct: 3   LIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTG 61

Query: 68  GGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK 104
             +  G+  IY    SA  +EP Y LIRNGL  K  K
Sbjct: 62  KHEIEGYTKIYADKPSAMLYEPDYELIRNGLKQKEAK 98

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3 Length = 102

 Score =  115 bits (290), Expect = 7e-35
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFG 67
           I       N LL R++    V     A  S  ++K KL  + +  +   + V      FG
Sbjct: 3   ISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFG 60

Query: 68  GGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQ 108
             ++ G+  IY+   +    E K  L +N ++ + E    +
Sbjct: 61  KLEAEGYAKIYNDEKAMATIETKSVLEKNKIEEEAEAEVAE 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 55/168 (32%)

Query: 14  MTNRLLSR--KQFVIDVLH----PGRANVSKAELKEKLA-RMY--------DVKDPNSIF 58
           M  +LL +    +     H      R +  +AEL+  L  + Y        +V++  +  
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 59  VFKFR-----THFGGGKSTGFGLIYDSVDSAKK-----------FEPKY--RLIRNGLDT 100
            F        T       T F  + D + +A               P     L+   LD 
Sbjct: 261 AFNLSCKILLT-------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 101 KVEKSRKQ---------------MKERKNRAKKIRGVKKTKASDAAKK 133
           + +   ++               +++        + V   K +   + 
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	100.0
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	100.0
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	100.0
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	100.0
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	100.0
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	100.0
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	100.0
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	80.32

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y

Probab=100.00  E-value=1.5e-59  Score=352.89  Aligned_cols=131  Identities=64%  Similarity=0.989  Sum_probs=125.9

Q ss_pred             CCCcceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCC
Q 032760            1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDS   80 (134)
Q Consensus         1 m~~~~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds   80 (134)
                      |+| +|||+|++|++||||+|+||+|+|+|||.||||++||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||
T Consensus         1 m~~-~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~-~~d~VvV~g~rT~fG~gkstGfa~IYds   78 (135)
T 3u5c_Y            1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNS   78 (135)
T ss_dssp             -CC-CCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTS-CGGGEEEEEEEECTTSSEEEEEEEEESS
T ss_pred             CCC-cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEeccCCceEEEEEEEeCC
Confidence            888 89999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHhcCCchhhhhcCCcccccc-chhhHHHHhhhccccccccccccchhhhc
Q 032760           81 VDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRGVKKTKASDAAKK  133 (134)
Q Consensus        81 ~e~~kk~Epk~~l~Rn~~~e~~k~-~rk~~ke~kn~~kk~~Gt~k~~~~~~~k~  133 (134)
                      +|+|++|||+|+|+|||+.|+.++ ||+|+||.+|++||+|||+|++++++.++
T Consensus        79 ~d~akk~EPkyrL~R~gl~ek~~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~  132 (135)
T 3u5c_Y           79 VAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR  132 (135)
T ss_dssp             HHHHHHHSCHHHHHHHTSSCCCCCSCHHHHHHHHHHHHTCCSCSHHHHHHHHHH
T ss_pred             HHHHHhcCchheEeeccccccccCccHHHHHHHHhcchhhcchhhhhccccccc
Confidence            999999999999999999998885 99999999999999999999999877553

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P

Probab=100.00  E-value=1.3e-57  Score=346.81  Aligned_cols=129  Identities=40%  Similarity=0.673  Sum_probs=125.6

Q ss_pred             ceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHH
Q 032760            5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSA   84 (134)
Q Consensus         5 ~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~   84 (134)
                      +|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+|+|
T Consensus         2 ~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~-~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a   80 (149)
T 2xzm_P            2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFSTQYGGGKSTGFALVYDNQQYL   80 (149)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTC-CGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred             cEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence            79999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HhcCCchhhhhcCCccccccchhhHHHHhhhccccccccccccchhhhcC
Q 032760           85 KKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKKK  134 (134)
Q Consensus        85 kk~Epk~~l~Rn~~~e~~k~~rk~~ke~kn~~kk~~Gt~k~~~~~~~k~~  134 (134)
                      ++|||+|+|+|||+.++.++||+|+||.+||+||+|||+|++++.+++++
T Consensus        81 Kk~EPkyrL~Rngl~ek~~~sRkqrKe~knr~kkvrGt~k~~~~~~~k~~  130 (149)
T 2xzm_P           81 LKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGD  130 (149)
T ss_dssp             HHHSCHHHHHHTTSSCCCCCHHHHHHHHHHHHTTSCHHHHHHHHTTSCSC
T ss_pred             HhhCchheeeeccccccccCcHHHHHHHHhhhhhhcchhhhhcccccccc
Confidence            99999999999999998888999999999999999999999998877753

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-59  Score=354.95  Aligned_cols=130  Identities=88%  Similarity=1.285  Sum_probs=93.4

Q ss_pred             ceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHH
Q 032760            5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSA   84 (134)
Q Consensus         5 ~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~   84 (134)
                      +|||+|++|++||||+|+||+|+|+|||.||||++||+++||+||+++|+|+||||+|+|+||+|+|+|||+||||+|+|
T Consensus         9 ~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~d~a   88 (138)
T 3iz6_U            9 AVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNLDAA   88 (138)
T ss_dssp             SCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCHHHH
T ss_pred             cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence            89999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             HhcCCchhhhhcCCccccccchhhHHHHhhhccccccccccccchhhhcC
Q 032760           85 KKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKKK  134 (134)
Q Consensus        85 kk~Epk~~l~Rn~~~e~~k~~rk~~ke~kn~~kk~~Gt~k~~~~~~~k~~  134 (134)
                      ++|||+|+|+|||+.|+.++||+|+||.+|++||+|||+|++++.+++++
T Consensus        89 Kk~EPkyrL~R~gl~ek~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~~  138 (138)
T 3iz6_U           89 KKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK  138 (138)
T ss_dssp             HSSCCCBTTTTTCC------------------------------------
T ss_pred             HhcCchheEeeccccccccccHHHHHHHHhcchhhcchheeeccccccCC
Confidence            99999999999999998888999999999999999999999999988764

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3

Probab=100.00  E-value=2.8e-45  Score=266.20  Aligned_cols=97  Identities=32%  Similarity=0.584  Sum_probs=91.6

Q ss_pred             ceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHH
Q 032760            5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSA   84 (134)
Q Consensus         5 ~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~   84 (134)
                      ...|+|+++++||||+|+||+|+|+|||+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus         8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~a   86 (107)
T 2v94_A            8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRM   86 (107)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHH
T ss_pred             eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHH
Confidence            37899999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HhcCCchhhhhcCCcccc
Q 032760           85 KKFEPKYRLIRNGLDTKV  102 (134)
Q Consensus        85 kk~Epk~~l~Rn~~~e~~  102 (134)
                      ++|||+|+|+|||+.+++
T Consensus        87 kk~Epky~L~R~g~~e~~  104 (107)
T 2v94_A           87 LYIEPEYILIRDGIIEKK  104 (107)
T ss_dssp             HHHSCHHHHHHTTC----
T ss_pred             HhhCchheeeecCccccc
Confidence            999999999999998764

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3

Probab=100.00  E-value=5.3e-45  Score=261.17  Aligned_cols=95  Identities=29%  Similarity=0.398  Sum_probs=92.5

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK   86 (134)
Q Consensus         7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk   86 (134)
                      .|+|.++++||||+|+||+|+|+|||+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~-~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~kk   80 (98)
T 2g1d_A            2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML   80 (98)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence            489999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCCcccc
Q 032760           87 FEPKYRLIRNGLDTKV  102 (134)
Q Consensus        87 ~Epk~~l~Rn~~~e~~  102 (134)
                      |||+|+|+||++.+++
T Consensus        81 ~Epky~l~R~~~~~~~   96 (98)
T 2g1d_A           81 YEPDYELIRNGLKQKE   96 (98)
T ss_dssp             HCTTSCSCSSCCCSSC
T ss_pred             hCcceeeeecCccccc
Confidence            9999999999998763

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3

Probab=100.00  E-value=8.3e-44  Score=256.17  Aligned_cols=93  Identities=26%  Similarity=0.420  Sum_probs=90.9

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK   86 (134)
Q Consensus         7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk   86 (134)
                      .|+|.++++||||+|+||+|+|+| |+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~akk   79 (101)
T 1xn9_A            2 DIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQ   79 (101)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence            489999999999999999999999 89999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCCccc
Q 032760           87 FEPKYRLIRNGLDTK  101 (134)
Q Consensus        87 ~Epk~~l~Rn~~~e~  101 (134)
                      |||+|+|+||++.++
T Consensus        80 ~Epky~L~R~g~~e~   94 (101)
T 1xn9_A           80 VEQEYVLKRNAVPGS   94 (101)
T ss_dssp             HHTGGGCCCCSCCCC
T ss_pred             hCchheeeecCcccc
Confidence            999999999999875

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3

Probab=100.00  E-value=2.1e-43  Score=254.57  Aligned_cols=93  Identities=23%  Similarity=0.314  Sum_probs=90.4

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK   86 (134)
Q Consensus         7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk   86 (134)
                      .|.|.++++||||+|+||+|+|+| |+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~akk   79 (102)
T 1ywx_A            2 DISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMAT   79 (102)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEccEecCCCceEEEEEEEECCHHHHHh
Confidence            478999999999999999999999 78999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCCccc
Q 032760           87 FEPKYRLIRNGLDTK  101 (134)
Q Consensus        87 ~Epk~~l~Rn~~~e~  101 (134)
                      |||+|+|+|||+.++
T Consensus        80 ~Epky~L~R~gl~e~   94 (102)
T 1ywx_A           80 IETKSVLEKNKIEEE   94 (102)
T ss_dssp             SSCHHHHHHSCSCCC
T ss_pred             hCchhheeecCccch
Confidence            999999999999875

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.32  E-value=8.5  Score=24.12  Aligned_cols=45  Identities=22%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760           34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK   86 (134)
Q Consensus        34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk   86 (134)
                      ...+..||++.++.. ++  .++-++.+     ..|.+.|||.| |++.+.+.+
T Consensus        20 ~~~t~~~l~~~F~~~-~i--~~v~i~~~-----~~g~~~g~afV~f~~~~~a~~   65 (91)
T 2dgw_A           20 FNVTEKNVMEFLAPL-KP--VAIRIVRN-----AHGNKTGYIFVDFSNEEEVKQ   65 (91)
T ss_dssp             SSCCHHHHHHHHTTS-CC--SEEEEEEC-----TTSCEEEEEEEECSSHHHHHH
T ss_pred             CCCCHHHHHHHHhhC-Cc--eEEEEEEC-----CCCCCceEEEEEECCHHHHHH
Confidence            567889999999766 66  34444443     35778899988 677766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d2v94a1	93	d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococc	3e-41
d2g1da1	98	d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermopl	3e-39
d1ywxa1	102	d.12.1.3 (A:1-102) Ribosomal protein S24e {Methano	8e-39
d1xn9a_	101	d.12.1.3 (A:) Ribosomal protein S24e {Methanosarci	2e-33

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  130 bits (328), Expect = 3e-41
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 8  IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFG 67
          I+  +   N+L+ RK+   ++ HPG    S+ ++K KL  M D+ +P +  +   R++FG
Sbjct: 3  IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFG 61

Query: 68 GGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 98
            KS G+   Y   D     EP+Y LIR+G+
Sbjct: 62 SYKSKGYAKYYYDKDRMLYIEPEYILIRDGI 92

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

 Score =  125 bits (316), Expect = 3e-39
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTH 65
           + I+ ++   N +L RK+    +        S+ E+KE +A+   V D   + V   +  
Sbjct: 3   LIIKEKR--DNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQL 59

Query: 66  FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK 104
            G  +  G+  IY    SA  +EP Y LIRNGL  K  K
Sbjct: 60  TGKHEIEGYTKIYADKPSAMLYEPDYELIRNGLKQKEAK 98

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

 Score =  124 bits (313), Expect = 8e-39
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFG 67
           I       N LL R++    V     A  S  ++K KL  + +  +   + V      FG
Sbjct: 3   ISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFG 60

Query: 68  GGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQ 108
             ++ G+  IY+   +    E K  L +N ++ + E    +
Sbjct: 61  KLEAEGYAKIYNDEKAMATIETKSVLEKNKIEEEAEAEVAE 101

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

 Score =  110 bits (277), Expect = 2e-33
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFG 67
           I+  K   N LL+R++    V + G +  S+ +++ KLA M +      + + + +T +G
Sbjct: 3   IKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYG 60

Query: 68  GGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRK 107
             +S G+  +Y+  D  K+ E +Y L RN +     +  +
Sbjct: 61  MQESKGYAKLYEDADRMKQVEQEYVLKRNAVPGSETEGEE 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d2v94a1	93	Ribosomal protein S24e {Pyrococcus abyssi [TaxId:	100.0
d2g1da1	98	Ribosomal protein S24e {Thermoplasma acidophilum [	100.0
d1ywxa1	102	Ribosomal protein S24e {Methanococcus maripaludis	100.0
d1xn9a_	101	Ribosomal protein S24e {Methanosarcina mazei [TaxI	100.0
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	88.31

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=4.3e-42  Score=242.31  Aligned_cols=92  Identities=33%  Similarity=0.605  Sum_probs=89.6

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK   86 (134)
Q Consensus         7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk   86 (134)
                      .|+|+++++||||+|+||.|+|.|||.|||||.||+++||++|++ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 ei~i~~~~~N~LL~R~Ei~~~v~h~g~~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk   80 (93)
T d2v94a1           2 EIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRMLY   80 (93)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHHHH
T ss_pred             cEEEEEeccCCCcccEEEEEEEEcCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeCccCCCCceEEEEEEEECCHHHHHh
Confidence            489999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCCc
Q 032760           87 FEPKYRLIRNGLD   99 (134)
Q Consensus        87 ~Epk~~l~Rn~~~   99 (134)
                      |||+|+|.|||+.
T Consensus        81 ~Ep~y~l~R~~li   93 (93)
T d2v94a1          81 IEPEYILIRDGII   93 (93)
T ss_dssp             HSCHHHHHHTTC-
T ss_pred             hChHHhhhhcccC
Confidence            9999999999974

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=4.6e-42  Score=244.23  Aligned_cols=95  Identities=29%  Similarity=0.398  Sum_probs=91.3

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK   86 (134)
Q Consensus         7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk   86 (134)
                      .|.|+++++||||+|+||.|+|.|||+|||||.||+++||++|++ |+|+|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 ei~I~~~k~NpLL~RrEi~~~v~h~g~~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk   80 (98)
T d2g1da1           2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML   80 (98)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHH
T ss_pred             cEEEEeeccCCCcccEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CcCEEEEEcCEecCCCceEEEEEEEECCHHHHHh
Confidence            367778889999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCCcccc
Q 032760           87 FEPKYRLIRNGLDTKV  102 (134)
Q Consensus        87 ~Epk~~l~Rn~~~e~~  102 (134)
                      |||+|+|.||++.+++
T Consensus        81 ~Ep~y~l~R~~~~~~~   96 (98)
T d2g1da1          81 YEPDYELIRNGLKQKE   96 (98)
T ss_dssp             HCTTSCSCSSCCCSSC
T ss_pred             hCchhhhhhcCcchhc
Confidence            9999999999998864

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

Probab=100.00  E-value=2.4e-41  Score=242.07  Aligned_cols=96  Identities=23%  Similarity=0.316  Sum_probs=92.3

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK   86 (134)
Q Consensus         7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk   86 (134)
                      .|.|.++.+||||+|+||+|+|.||| |||||.||+++||++|++ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 eieI~~~k~N~LL~RkEi~~~v~h~g-~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk   79 (102)
T d1ywxa1           2 DISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMAT   79 (102)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECSS-CCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             ceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHHHCc-CcCEEEEEcCEecCCCCeEEEEEEEECCHHHHHh
Confidence            47899999999999999999999997 999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCCcccccc
Q 032760           87 FEPKYRLIRNGLDTKVEK  104 (134)
Q Consensus        87 ~Epk~~l~Rn~~~e~~k~  104 (134)
                      |||+|+|.||++.++...
T Consensus        80 ~Ep~y~l~R~~~~~~~e~   97 (102)
T d1ywxa1          80 IETKSVLEKNKIEEEAEA   97 (102)
T ss_dssp             SSCHHHHHHSCSCCCCSC
T ss_pred             hCchheeeecCccccccc
Confidence            999999999999887544

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=1.3e-40  Score=237.79  Aligned_cols=97  Identities=26%  Similarity=0.429  Sum_probs=92.1

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK   86 (134)
Q Consensus         7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk   86 (134)
                      .|.|.++.+||||+|+||+|+|.||| +||||.||+++||++||+ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 eieI~~~k~N~LL~R~Ei~~~v~h~g-~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~k~   79 (101)
T d1xn9a_           2 DIKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQ   79 (101)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECSS-SCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             ceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHhHCc-CcCEEEEEcCcccCCCceEEEEEEEECCHHHHHh
Confidence            47899999999999999999999998 899999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCCccccccc
Q 032760           87 FEPKYRLIRNGLDTKVEKS  105 (134)
Q Consensus        87 ~Epk~~l~Rn~~~e~~k~~  105 (134)
                      |||+|+|.||++.+.+..+
T Consensus        80 ~Ep~y~l~R~~~~~~~~~~   98 (101)
T d1xn9a_          80 VEQEYVLKRNAVPGSETEG   98 (101)
T ss_dssp             HHTGGGCCCCSCCCCCCCC
T ss_pred             hCchheeeecCcccccccc
Confidence            9999999999987765443

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.41  Score=30.38  Aligned_cols=55  Identities=18%  Similarity=0.272  Sum_probs=36.4

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHhc
Q 032760           26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKKF   87 (134)
Q Consensus        26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk~   87 (134)
                      +-|..- ....+.+||++.++. ||. =.++.++.+-.    .|.+.|||.| |.|.+.|...
T Consensus        11 l~V~nL-p~~~te~~l~~~f~~-~G~-i~~v~i~~~~~----tg~~~g~afV~f~~~~~a~~a   66 (104)
T d1p1ta_          11 VFVGNI-PYEATEEQLKDIFSE-VGP-VVSFRLVYDRE----TGKPKGYGFCEYQDQETALSA   66 (104)
T ss_dssp             EEEESC-CTTSCHHHHHHHHHT-TSC-CSEEEEEEETT----TTEEEEEEEEECSCHHHHHHH
T ss_pred             EEEECC-CCcCCHHHHHHhhhc-ccc-ccccccccccc----eeccCCceEEEECCHHHHHHH
Confidence            334444 356789999998865 553 24444444333    3688999998 8888877664