Citrus Sinensis ID: 032787

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHccccHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHcccEEEEEcccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccccccccccccccEEEEEEEEccccEEEcccEEEEccccccccccccccccccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHcccEEEEEEccccccHHHHHHccccccccc
Coil and Loop (DISEMBL)
maaapclhygtpasikiqqkqqptrNWMMMQGLrrrngkaskrvgvtncsgnsgieigdfiggdllkpdlgrwLSDVEKHKAIAiytpheggyegryLNRLRYLGYYFLdlsarglgdpettltkvypvcpvs
Flexible Loop (DISEMBL)
maaapclhygtpasikiqqkqqpTRNWMMMQGLRrrngkaskrvgvtncsgnsgieigdfigGDLLKPDLGRWLSDVEKHKAIaiytpheggyegRYLNRLRYLGYYFLDLSArglgdpettltkvypvcpvs
Low Complexity Region (SEG)
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEggyegrylnrlrylgyyflDLSARGLGDPETTLTKVYPVCPVS
Disordered region (IsUnstruct)
*******************************************VGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVC***
Disordered Region (DISOPRED)
*********GTPASI************************************NSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVC***
Disordered Region (DISEMBL)
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVS
Disordered Region (DISPRO)
*****CLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q5N0W6	158	NAD(P)H-quinone oxidoredu	yes	no	0.451	0.379	0.533	2e-10
Q31L05	158	NAD(P)H-quinone oxidoredu	yes	no	0.451	0.379	0.533	2e-10
B1XK97	157	NAD(P)H-quinone oxidoredu	yes	no	0.443	0.375	0.491	7e-10
B8HUU1	158	NAD(P)H-quinone oxidoredu	yes	no	0.451	0.379	0.516	1e-09
P74069	161	NAD(P)H-quinone oxidoredu	N/A	no	0.443	0.366	0.525	2e-09
B2ITQ6	158	NAD(P)H-quinone oxidoredu	yes	no	0.436	0.367	0.5	2e-09
B0JY52	158	NAD(P)H-quinone oxidoredu	yes	no	0.443	0.373	0.491	2e-09
Q8YPH8	162	NAD(P)H-quinone oxidoredu	yes	no	0.436	0.358	0.5	5e-09
Q3MFC2	162	NAD(P)H-quinone oxidoredu	yes	no	0.436	0.358	0.5	5e-09
A3PF48	158	NAD(P)H-quinone oxidoredu	yes	no	0.451	0.379	0.466	7e-09

>sp|Q5N0W6|NDHN_SYNP6 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhN PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 40/60 (66%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++L  +E+  A+A+Y P EGGYEGRYL RLR  GY  L  SARGLGDP   L  ++ V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|Q31L05|NDHN_SYNE7 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC 7942) GN=ndhN PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 40/60 (66%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++L  +E+  A+A+Y P EGGYEGRYL RLR  GY  L  SARGLGDP   L  ++ V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B1XK97|NDHN_SYNP2 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhN PE=3 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 73  WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++  VEK  A+A+Y P EGG+EGRY+ RLR  GY  ++L+ARGLGD    LT+ + + P
Sbjct: 10  FIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYLTQYHGIRP 68

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B8HUU1|NDHN_CYAP4 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhN PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           +++ D+EK  A+ IY P EGG+EGRY  RLR  GY  L +SA GLGD  + LT+V+ V P
Sbjct: 9   QFIQDLEKSGALGIYVPSEGGFEGRYQRRLRAAGYSTLHISAPGLGDLPSYLTQVHGVRP 68

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|P74069|NDHN_SYNY3 NAD(P)H-quinone oxidoreductase subunit N OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ndhN PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query: 73  WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++  +E   A+A+Y P EGGYEGRY  RLR  GY  + LSARGLGD E  L +V+ V P
Sbjct: 13  FIRALENDGALAVYAPLEGGYEGRYQRRLRANGYASISLSARGLGDVEAYLMQVHGVRP 71

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B2ITQ6|NDHN_NOSP7 NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhN PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           + D+EK  A+ +Y P EGGYEGRY  RLR  GY  L ++A+GLGD    LT+++ V P
Sbjct: 11  IRDLEKFGALGVYVPLEGGYEGRYQRRLRAAGYTTLHITAKGLGDVAAYLTRIHGVRP 68

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B0JY52|NDHN_MICAN NAD(P)H-quinone oxidoreductase subunit N OS=Microcystis aeruginosa (strain NIES-843) GN=ndhN PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 73  WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++ D+E++ A+ +Y P EGGYEGRY  RLR  GY  L ++ARGLGD    LT ++ V P
Sbjct: 10  FIRDLEQYGALGVYAPLEGGYEGRYQRRLRATGYNVLHITARGLGDLSAYLTGIHGVRP 68

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8YPH8|NDHN_NOSS1 NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ndhN PE=3 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           + D+EK  ++ +Y P EGG+EGRY  RLR  GY  L  +ARGLGD    LT V+ V P
Sbjct: 11  IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRP 68

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q3MFC2|NDHN_ANAVT NAD(P)H-quinone oxidoreductase subunit N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhN PE=3 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           + D+EK  ++ +Y P EGG+EGRY  RLR  GY  L  +ARGLGD    LT V+ V P
Sbjct: 11  IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRP 68

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A3PF48|NDHN_PROM0 NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus (strain MIT 9301) GN=ndhN PE=3 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++ +D++ +K +AI+ P EGGYE R L R+R  G+     SARGLGDPE  L K++ V P
Sbjct: 9   KFHNDLKTNKCLAIFAPLEGGYETRLLRRMRAKGFKTFITSARGLGDPEVFLLKLHGVRP 68

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Prochlorococcus marinus (strain MIT 9301) (taxid: 167546)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
356569983	229	PREDICTED: NAD(P)H-quinone oxidoreductas	0.947	0.550	0.575	4e-37
255646756	229	unknown [Glycine max]	0.947	0.550	0.575	4e-37
118489764	231	unknown [Populus trichocarpa x Populus d	0.932	0.536	0.6	2e-36
357460593	224	NAD(P)H-quinone oxidoreductase subunit N	0.954	0.566	0.591	6e-36
224124860	191	predicted protein [Populus trichocarpa]	0.781	0.544	0.682	2e-33
212720849	272	uncharacterized protein LOC100192546 [Ze	0.578	0.283	0.844	3e-33
357126207	210	PREDICTED: NAD(P)H-quinone oxidoreductas	0.563	0.357	0.866	4e-33
326524171	208	predicted protein [Hordeum vulgare subsp	0.654	0.418	0.770	6e-33
363807976	192	uncharacterized protein LOC100777422 [Gl	0.736	0.510	0.691	6e-33
194697374	208	unknown [Zea mays] gi|195611394|gb|ACG27	0.578	0.370	0.844	1e-32

>gi|356569983|ref|XP_003553172.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit N-like [Glycine max]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 102/146 (69%), Gaps = 20/146 (13%)

Query: 1   MAAAPCLHYGTPA---SIKIQQKQQPTRNWMM---------MQGLRRRNGKA---SKRVG 45
           M++   L YG P    ++   +KQQ  RN  +         M+G R R+G     SKRVG
Sbjct: 1   MSSTASLGYGAPTCFNNVHHTKKQQAMRNSFLSNKHNSVRVMKGWRGRHGNTNNTSKRVG 60

Query: 46  VTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLG 105
           +  C G     +GDFIGGDL+K DLGRWLSDVE+HKA+AIY PHEGGYEGRYL+RL+  G
Sbjct: 61  IVQCRG-----LGDFIGGDLIKFDLGRWLSDVEEHKALAIYPPHEGGYEGRYLSRLKRQG 115

Query: 106 YYFLDLSARGLGDPETTLTKVYPVCP 131
           YYFLDL+ARGLGDPETTLTK++PVCP
Sbjct: 116 YYFLDLTARGLGDPETTLTKIHPVCP 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646756|gb|ACU23851.1| unknown [Glycine max]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 102/146 (69%), Gaps = 20/146 (13%)

Query: 1   MAAAPCLHYGTPA---SIKIQQKQQPTRNWMM---------MQGLRRRNGKA---SKRVG 45
           M++   L YG P    ++   +KQQ  RN  +         M+G R R+G     SKRVG
Sbjct: 1   MSSTASLGYGAPTCFNNVHHTKKQQAMRNSFLSNKHNSVRVMKGWRGRHGNTNNTSKRVG 60

Query: 46  VTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLG 105
           +  C G     +GDFIGGDL+K DLGRWLSDVE+HKA+AIY PHEGGYEGRYL+RL+  G
Sbjct: 61  IVQCRG-----LGDFIGGDLIKFDLGRWLSDVEEHKALAIYPPHEGGYEGRYLSRLKRQG 115

Query: 106 YYFLDLSARGLGDPETTLTKVYPVCP 131
           YYFLDL+ARGLGDPETTLTK++PVCP
Sbjct: 116 YYFLDLTARGLGDPETTLTKIHPVCP 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489764|gb|ABK96682.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 94/135 (69%), Gaps = 11/135 (8%)

Query: 8   HYGTPASIKIQQKQQPT-----------RNWMMMQGLRRRNGKASKRVGVTNCSGNSGIE 56
           H   PASI +  KQQ +           RN M++QG    N  + +R         SGI 
Sbjct: 10  HGRAPASINLHHKQQRSCSPRISVMVGNRNVMLLQGFIYNNNVSKRRPTAGLVVKCSGIG 69

Query: 57  IGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGL 116
           +GDFIGGDL+K D+G+WLSDVE+HKA+AIY PHEGGYEGRYLNRL   GYYFLDLSARGL
Sbjct: 70  LGDFIGGDLVKFDIGQWLSDVEEHKALAIYPPHEGGYEGRYLNRLIRQGYYFLDLSARGL 129

Query: 117 GDPETTLTKVYPVCP 131
           GDPETTLTKV+PVCP
Sbjct: 130 GDPETTLTKVHPVCP 144

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460593|ref|XP_003600578.1| NAD(P)H-quinone oxidoreductase subunit N [Medicago truncatula] gi|355489626|gb|AES70829.1| NAD(P)H-quinone oxidoreductase subunit N [Medicago truncatula]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 98/142 (69%), Gaps = 15/142 (10%)

Query: 1   MAAAPCLHYGTPASIKIQQKQQPTRNWMM----------MQGLRRRNGKASKRVGVTNCS 50
           M A+  L  G P    IQQ   P RN  M          M G R +   +++   V  CS
Sbjct: 1   MLASASLGCGGPTCSNIQQ---PPRNSFMAENHNNSVRLMMGWRGKQCNSNRSKRVVKCS 57

Query: 51  GNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLD 110
             SGI +GDFIGGDL+K D+GRWLSDVE+HKA+AIYTPHEGGYEGRYL+RL+  GYYFLD
Sbjct: 58  --SGIGLGDFIGGDLVKFDIGRWLSDVEEHKALAIYTPHEGGYEGRYLSRLQRQGYYFLD 115

Query: 111 LSARGLGDPETTLTKVYPVCPV 132
           L+ARGLGDPETTLTKV+PVCP 
Sbjct: 116 LTARGLGDPETTLTKVHPVCPA 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124860|ref|XP_002319440.1| predicted protein [Populus trichocarpa] gi|222857816|gb|EEE95363.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 82/104 (78%)

Query: 28  MMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYT 87
           M++QG    N  + +R         SGI +GDFIGGDL+K D+G+WLSDVE+HKA+AIY 
Sbjct: 1   MLLQGFIYNNNVSKRRPTAGLVVKCSGIGLGDFIGGDLVKFDIGQWLSDVEEHKALAIYP 60

Query: 88  PHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           PHEGGYEGRYLNRL   GYYFLDLSARGLGDPETTLTKV+PVCP
Sbjct: 61  PHEGGYEGRYLNRLIRQGYYFLDLSARGLGDPETTLTKVHPVCP 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212720849|ref|NP_001131237.1| uncharacterized protein LOC100192546 [Zea mays] gi|194690956|gb|ACF79562.1| unknown [Zea mays] gi|414879382|tpg|DAA56513.1| TPA: NADH dehydrogenase I subunit N [Zea mays]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 72/77 (93%)

Query: 57  IGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGL 116
           + DF+GGDL++PDLG+WL DVEKHKA+AIY PHEGGYEGRYLNRLRY GYYFLDLSARGL
Sbjct: 108 VWDFVGGDLVRPDLGKWLDDVEKHKALAIYPPHEGGYEGRYLNRLRYQGYYFLDLSARGL 167

Query: 117 GDPETTLTKVYPVCPVS 133
           GDPETTLTKV+PVCP S
Sbjct: 168 GDPETTLTKVHPVCPPS 184

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126207|ref|XP_003564780.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit N-like [Brachypodium distachyon]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 71/75 (94%)

Query: 59  DFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGD 118
           DF+GGDL+KPDLGRWL DVEKHKA+AIY PHEGGYEGRYLNRLRY GYYFLDLSARGLGD
Sbjct: 48  DFVGGDLVKPDLGRWLEDVEKHKALAIYPPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 107

Query: 119 PETTLTKVYPVCPVS 133
           PE+TLTK++PVCP S
Sbjct: 108 PESTLTKIHPVCPPS 122

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326524171|dbj|BAJ97096.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 76/87 (87%)

Query: 47  TNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGY 106
           +  S  +G  + DF+GGDL+KPDLGRWL DVEKHKA+AIY PHEGGYEGRYLNRLRY GY
Sbjct: 34  STVSVRAGGGLMDFVGGDLVKPDLGRWLDDVEKHKALAIYPPHEGGYEGRYLNRLRYQGY 93

Query: 107 YFLDLSARGLGDPETTLTKVYPVCPVS 133
           YFLDLSARGLGDPE+TLTK++PVCP S
Sbjct: 94  YFLDLSARGLGDPESTLTKIHPVCPPS 120

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807976|ref|NP_001242714.1| uncharacterized protein LOC100777422 [Glycine max] gi|255639899|gb|ACU20242.1| unknown [Glycine max]

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 87/107 (81%), Gaps = 9/107 (8%)

Query: 29  MMQGLRRRNGK---ASKRV-GVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIA 84
           +++G R R+G     SKRV GV  C G     +GDFIGGDL+K DLGRWLSDVE+HKA+A
Sbjct: 3   VVKGWRGRHGNNCNTSKRVVGVVQCRG-----LGDFIGGDLIKFDLGRWLSDVEEHKALA 57

Query: 85  IYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           IY PHEGGYEGRYL+RL+  GYYFLDL+ARGLGDPETTLTK++PVCP
Sbjct: 58  IYPPHEGGYEGRYLSRLKRQGYYFLDLTARGLGDPETTLTKIHPVCP 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194697374|gb|ACF82771.1| unknown [Zea mays] gi|195611394|gb|ACG27527.1| NADH dehydrogenase I subunit N [Zea mays] gi|195634885|gb|ACG36911.1| NADH dehydrogenase I subunit N [Zea mays] gi|223974227|gb|ACN31301.1| unknown [Zea mays] gi|238008648|gb|ACR35359.1| unknown [Zea mays] gi|414879383|tpg|DAA56514.1| TPA: NADH dehydrogenase I subunit N isoform 1 [Zea mays] gi|414879384|tpg|DAA56515.1| TPA: NADH dehydrogenase I subunit N isoform 2 [Zea mays]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 72/77 (93%)

Query: 57  IGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGL 116
           + DF+GGDL++PDLG+WL DVEKHKA+AIY PHEGGYEGRYLNRLRY GYYFLDLSARGL
Sbjct: 44  VWDFVGGDLVRPDLGKWLDDVEKHKALAIYPPHEGGYEGRYLNRLRYQGYYFLDLSARGL 103

Query: 117 GDPETTLTKVYPVCPVS 133
           GDPETTLTKV+PVCP S
Sbjct: 104 GDPETTLTKVHPVCPPS 120

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2161263	209	NdhN "NADH dehydrogenase-like	0.654	0.416	0.537	2.7e-20

TAIR|locus:2161263 NdhN "NADH dehydrogenase-like complex N" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 50/93 (53%), Positives = 57/93 (61%)

Query:    39 KASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEXXXXXXXX 98
             K  +  GV  CS      I D+IGGDL+KPD+G+WL DVE+HKAIAIY PHE        
Sbjct:    37 KRRRSTGV-KCSS-----IADYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYL 90

Query:    99 XXXXXXXXXXXDLSARGLGDPETTLTKVYPVCP 131
                        D+SARGLGDPETTL K YPVCP
Sbjct:    91 NRLKMQGYYFLDISARGLGDPETTLLKNYPVCP 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      133       114   0.00091  102 3  11 22  0.36    31
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.69u 0.10s 9.79t   Elapsed:  00:00:01
  Total cpu time:  9.69u 0.10s 9.79t   Elapsed:  00:00:01
  Start:  Fri May 10 03:16:18 2013   End:  Fri May 10 03:16:19 2013

GO:0016020 "membrane" evidence=IEA

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010258 "NADH dehydrogenase complex (plastoquinone) assembly" evidence=IMP

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=TAS

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00005655001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_155, whole gen [...] (254 aa)			•	•			•		0.836
	ndhM	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; NDH-1 shuttles elect [...] (208 aa)			•				•		0.829
	ndhH	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence;; NDH shuttles elect [...] (372 aa)					•		•		0.780
	ndhJ	NADH dehydrogenase subunit J ; NDH shuttles electrons from NAD(P)H-plastoquinone, via FMN and i [...] (158 aa)					•		•		0.743
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•	•			•		0.727
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•	•			•		0.721
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)			•	•			•		0.717
	GSVIVG00038032001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (158 aa)			•	•			•		0.702
	GSVIVG00029202001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (297 aa)			•	•					0.681
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)			•	•					0.680

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
pfam11909	154	pfam11909, NdhN, NADH-quinone oxidoreductase cyano	7e-31

>gnl|CDD|152344 pfam11909, NdhN, NADH-quinone oxidoreductase cyanobacterial subunit N

 Score =  107 bits (269), Expect = 7e-31
 Identities = 35/61 (57%), Positives = 43/61 (70%)

Query: 71  GRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVC 130
            ++  D+EK  A+A+Y P EGGYEGRYL RLR  GY  L  SARGLGDPE  LT+++ V 
Sbjct: 8   RKFRRDLEKAGALAVYAPLEGGYEGRYLRRLRAAGYRTLITSARGLGDPEAFLTQLHGVR 67

Query: 131 P 131
           P
Sbjct: 68  P 68

The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. Homologues of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 subcomplexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The cyanobacterial NDH-1 complex contains additional subunits, NdhM and NdhN, compared with the minimal set of the bacterial enzyme and these seem to be specific for thylakoid-located NDH-1 of photosynthetic organisms. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
PF11909	154	NdhN: NADH-quinone oxidoreductase cyanobacterial s	100.0
PRK13361	329	molybdenum cofactor biosynthesis protein A; Provis	85.36
PF14085	117	DUF4265: Domain of unknown function (DUF4265)	84.34
TIGR02668	302	moaA_archaeal probable molybdenum cofactor biosynt	83.19
TIGR02666	334	moaA molybdenum cofactor biosynthesis protein A, b	80.71
PRK00164	331	moaA molybdenum cofactor biosynthesis protein A; R	80.69

>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain

Probab=100.00  E-value=1.5e-39  Score=252.63  Aligned_cols=63  Identities=59%  Similarity=0.935  Sum_probs=62.2

Q ss_pred             hhHHHHHHhcceeEEecCCCCCchhhhHhHhhhcCceEEEeccCCCCChhhhhhhcCCCCCCC
Q 032787           71 GRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVS  133 (133)
Q Consensus        71 ~~f~rDlEk~gaLaiy~PlEGG~EGRy~RRLRa~GY~~~~~SARGLGDpeayLt~vHGVRPPH  133 (133)
                      .+|++||||+||||||+|+||||||||+||||++||+|+++|||||||||+|||++|||||||
T Consensus         8 ~~f~rdlEk~gaLavy~PlEGG~EgRy~RRLRa~GY~t~~~SArGLGD~~ayLt~~HGVRPpH   70 (154)
T PF11909_consen    8 KKFIRDLEKSGALAVYAPLEGGYEGRYLRRLRAAGYRTLIISARGLGDPEAYLTKVHGVRPPH   70 (154)
T ss_pred             hHHHHHHHHcCceEEEcCCcCchhHHHHHHHHhcCceEEEecccCCCCHHHHHhccCCCCCCC
Confidence            589999999999999999999999999999999999999999999999999999999999999

The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional

Probab=85.36  E-value=1.7  Score=35.30  Aligned_cols=60  Identities=22%  Similarity=0.373  Sum_probs=45.8

Q ss_pred             cccCc-ccccChhhHHHHHHhcce---eEEecCCCCCchhhhHhHhhhcCceEEEeccCCCCChhhh
Q 032787           60 FIGGD-LLKPDLGRWLSDVEKHKA---IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETT  122 (133)
Q Consensus        60 ~iggd-l~~~d~~~f~rDlEk~ga---Laiy~PlEGG~EGRy~RRLRa~GY~~~~~SARGLGDpeay  122 (133)
                      |.||+ |+..|+..+++.+.+.+-   ++|-  .-|-.-.++.++|+.+|...+++|--++ |++.|
T Consensus        67 ~tGGEPllr~dl~~li~~i~~~~~l~~i~it--TNG~ll~~~~~~L~~aGl~~v~ISlDs~-~~e~~  130 (329)
T PRK13361         67 LTGGEPLVRRGCDQLVARLGKLPGLEELSLT--TNGSRLARFAAELADAGLKRLNISLDTL-RPELF  130 (329)
T ss_pred             EECcCCCccccHHHHHHHHHhCCCCceEEEE--eChhHHHHHHHHHHHcCCCeEEEEeccC-CHHHh
Confidence            34554 788999999999988764   4443  2354456789999999999999999987 67766

>PF14085 DUF4265: Domain of unknown function (DUF4265)

Probab=84.34  E-value=2.7  Score=30.34  Aligned_cols=61  Identities=25%  Similarity=0.280  Sum_probs=49.1

Q ss_pred             eeeEEeecCCCcccccccccCcccccChhhHHHHHHhcce---------eEEecCCCCCchh--hhHhHhhhcCc
Q 032787           43 RVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKA---------IAIYTPHEGGYEG--RYLNRLRYLGY  106 (133)
Q Consensus        43 ~~~~v~c~g~~~~~~~d~iggdl~~~d~~~f~rDlEk~ga---------Laiy~PlEGG~EG--Ry~RRLRa~GY  106 (133)
                      -..+|+.|||+.+-+--.-.+.   -|+.+.++.||+.||         +||=+|..-+|+.  .|+.+++.+|-
T Consensus        43 ~~~~v~~sGnsTiRv~~~~~~~---~~~~~v~~~l~~lG~~~E~~~~~~lav~VP~~~~~~~i~~~L~~~~e~g~  114 (117)
T PF14085_consen   43 FQKVVESSGNSTIRVIFDDPGP---DDIEAVREELEALGCTVEGFSERMLAVDVPPSVDFDAIKDYLDRGEEQGW  114 (117)
T ss_pred             EEEEEecCCCEEEEEEEcCCcc---hhHHHHHHHHHHcCCeEEccCCCEEEEEECCCCCHHHHHHHHHhhhhcCc
Confidence            4557888999988776665555   788999999999887         7899999999885  77888877763

>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal

Probab=83.19  E-value=2.9  Score=32.88  Aligned_cols=62  Identities=24%  Similarity=0.373  Sum_probs=46.5

Q ss_pred             ccccCc-ccccChhhHHHHHHhcce--eEEecCCCCCchhhhHhHhhhcCceEEEeccCCCCChhhhh
Q 032787           59 DFIGGD-LLKPDLGRWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTL  123 (133)
Q Consensus        59 d~iggd-l~~~d~~~f~rDlEk~ga--Laiy~PlEGG~EGRy~RRLRa~GY~~~~~SARGLGDpeayL  123 (133)
                      .|.||+ |+..|+..+++.+.+.|-  ++|.+  .|=.-..+..+|+.+|...+.+|.-++ |++.|-
T Consensus        61 ~~tGGEPll~~~l~~iv~~l~~~g~~~v~i~T--NG~ll~~~~~~l~~~g~~~v~iSld~~-~~~~~~  125 (302)
T TIGR02668        61 KITGGEPLLRKDLIEIIRRIKDYGIKDVSMTT--NGILLEKLAKKLKEAGLDRVNVSLDTL-DPEKYK  125 (302)
T ss_pred             EEECcccccccCHHHHHHHHHhCCCceEEEEc--CchHHHHHHHHHHHCCCCEEEEEecCC-CHHHhh
Confidence            355665 678999999999988873  45543  343445788899999999999999997 666553

This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).

>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial

Probab=80.71  E-value=3.9  Score=32.82  Aligned_cols=60  Identities=30%  Similarity=0.410  Sum_probs=43.3

Q ss_pred             cccCc-ccccChhhHHHHHHhc-ce--eEEecCCCCCchhhhHhHhhhcCceEEEeccCCCCChhhh
Q 032787           60 FIGGD-LLKPDLGRWLSDVEKH-KA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETT  122 (133)
Q Consensus        60 ~iggd-l~~~d~~~f~rDlEk~-ga--Laiy~PlEGG~EGRy~RRLRa~GY~~~~~SARGLGDpeay  122 (133)
                      |.||+ |+..|+.++++.+.+. |.  +.|.+  -|=.-.++..+|+.+|...+.+|--++ |++.|
T Consensus        65 ltGGEPll~~~l~~li~~i~~~~gi~~v~itT--NG~ll~~~~~~L~~~gl~~v~ISld~~-~~~~~  128 (334)
T TIGR02666        65 LTGGEPLLRKDLVELVARLAALPGIEDIALTT--NGLLLARHAKDLKEAGLKRVNVSLDSL-DPERF  128 (334)
T ss_pred             EECccccccCCHHHHHHHHHhcCCCCeEEEEe--CchhHHHHHHHHHHcCCCeEEEecccC-CHHHh
Confidence            34454 7788999999998774 42  44433  343345689999999999999999887 55544

The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.

>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed

Probab=80.69  E-value=4  Score=32.66  Aligned_cols=63  Identities=24%  Similarity=0.320  Sum_probs=43.6

Q ss_pred             ccccCc-ccccChhhHHHHHHhc-ceeEEecCCCCCchhhhHhHhhhcCceEEEeccCCCCChhhh
Q 032787           59 DFIGGD-LLKPDLGRWLSDVEKH-KAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETT  122 (133)
Q Consensus        59 d~iggd-l~~~d~~~f~rDlEk~-gaLaiy~PlEGG~EGRy~RRLRa~GY~~~~~SARGLGDpeay  122 (133)
                      .|.||+ |+..|+.++++.+.+. +-.-|..--.|=.-.++..+|+.+|...+.+|.-++ |++.|
T Consensus        70 ~~tGGEPll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~-~~e~~  134 (331)
T PRK00164         70 RLTGGEPLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSL-DPERF  134 (331)
T ss_pred             EEECCCCcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccC-CHHHh
Confidence            345565 5678999999998776 322333333343345788999999999999999886 55554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00