Citrus Sinensis ID: 032797

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHcccEEEEEcccccHHHHHcccccEEEEccccccccccccHHHHHHHHcccccEEEEcHHHHHHHHHHcccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHcccEEEEccccccccHccccHHHHHHHcccccEEEEEccHHHHHHHHccEEEEccHEccccccccc
Coil and Loop (DISEMBL)
mavaeavpiskslylddkksknnknpiividnydSFTYNLCQYMGelgyhfevyrndeltVEELkrknprgvlispgpgapqdsgislqtvlelgptvplfgvcMGLQCIGEAFGDCAFSAWCHAWKKFSCVL
Flexible Loop (DISEMBL)
mavaeavpiskslylddkksknnknpiivIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCVL
Low Complexity Region (SEG)
MAVAEAVPIskslylddkkskNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCVL
Disordered region (IsUnstruct)
************************NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEE**********************ISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV*
Disordered Region (DISOPRED)
**************************IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV*
Disordered Region (DISEMBL)
MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCVL
Disordered Region (DISPRO)
*********************NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q08654	589	Anthranilate synthase com	yes	no	0.669	0.151	0.560	1e-25
P14952	91	Anthranilate synthase com	no	no	0.654	0.956	0.540	2e-24
P00901	198	Anthranilate synthase com	yes	no	0.669	0.449	0.483	2e-23
P48261	190	Anthranilate synthase com	N/A	no	0.714	0.5	0.515	7e-23
P28819	194	Para-aminobenzoate/anthra	yes	no	0.669	0.458	0.505	8e-23
Q1XDC5	189	Anthranilate synthase com	N/A	no	0.639	0.449	0.552	1e-22
P51362	189	Anthranilate synthase com	N/A	no	0.669	0.470	0.539	4e-22
P20576	201	Anthranilate synthase com	yes	no	0.669	0.442	0.505	7e-22
Q92370	759	Anthranilate synthase com	yes	no	0.736	0.129	0.485	9e-22
P09575	367	Anthranilate synthase com	N/A	no	0.669	0.242	0.511	1e-21

>sp|Q08654|TRPG_THEMA Anthranilate synthase component II OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=trpGD PE=3 SV=2

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 68/91 (74%), Gaps = 2/91 (2%)

Query: 27  IIVIDNYDSFTYNLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS 84
           +IVIDNYDSF YN+ QY+GE+      EV+RNDE+T+EE++RKNP  ++ISPGPG P+++
Sbjct: 47  VIVIDNYDSFVYNIVQYIGEVEPDCEIEVFRNDEITIEEIERKNPTHIVISPGPGRPEEA 106

Query: 85  GISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           GIS+  V      VP+ GVC+G Q IG AFG
Sbjct: 107 GISVDVVRHFSGKVPILGVCLGHQVIGYAFG 137

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 8

>sp|P14952|TRPG_CLOTM Anthranilate synthase component 2 (Fragment) OS=Clostridium thermocellum GN=trpG PE=4 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 69/87 (79%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+GE+  + EVYRND++T+E+++  NP  ++ISPGPG P+D+GI
Sbjct: 5   ILIIDNYDSFTYNLYQYVGEISPNIEVYRNDKITLEKIEEMNPTHIIISPGPGFPKDAGI 64

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEA 113
            ++ + + G  +P+ GVC+G Q IGEA
Sbjct: 65  CIEAIRKFGRYIPILGVCLGHQAIGEA 91

Clostridium thermocellum (taxid: 1515)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P00901|TRPG_PSEPU Anthranilate synthase component II OS=Pseudomonas putida GN=trpG PE=1 SV=2

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 67/89 (75%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYN+ QY+GELG   +V RNDE+T+ +++  NP  +++SPGP  P ++G+
Sbjct: 3   LMMIDNYDSFTYNVVQYLGELGAEVKVIRNDEMTIAQIEALNPERIVVSPGPCTPSEAGV 62

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           S++ +L     +P+ GVC+G Q IG+AFG
Sbjct: 63  SIEAILHFAGKLPILGVCLGHQSIGQAFG 91

Pseudomonas putida (taxid: 303)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P48261|TRPG_CYAPA Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1

 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 65/95 (68%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+ EL     V RND++T++E+K  N +G++ISP PG P+DSGI
Sbjct: 2   ILLIDNYDSFTYNLAQYLSELNIKVLVKRNDKITLDEIKNLNIQGIIISPCPGGPEDSGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSA 121
           S   +  LG  +P+ GVC+G Q IG  FG     A
Sbjct: 62  SQGIIKYLGNQIPILGVCLGHQTIGHVFGGKIIKA 96

Cyanophora paradoxa (taxid: 2762)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P28819|PABA_BACSU Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II OS=Bacillus subtilis (strain 168) GN=pabA PE=4 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 65/89 (73%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+GELG    V RND +T++E++  +P  ++ISPGP +P ++GI
Sbjct: 2   ILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL+ +      +P+FGVC+G Q I + FG
Sbjct: 62  SLEAIKHFAGKIPIFGVCLGHQSIAQVFG 90

Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine and also involved in the synthesis of anthranilate.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q1XDC5|TRPG_PORYE Anthranilate synthase component II OS=Porphyra yezoensis GN=trpG PE=4 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 61/85 (71%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL Q +GELGY   V RNDE+ +  +K+ NP  ++ISPGPG P DSGI
Sbjct: 2   ILIIDNYDSFTYNLAQCVGELGYDVLVCRNDEIDIPTIKQLNPNKIIISPGPGKPSDSGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIG 111
           SL  +     ++P+ GVC+G Q IG
Sbjct: 62  SLDVISSFSDSIPILGVCLGHQSIG 86

Porphyra yezoensis (taxid: 2788)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P51362|TRPG_PORPU Anthranilate synthase component II OS=Porphyra purpurea GN=trpG PE=4 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 63/89 (70%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL Q +GELG+   V RNDE+ V ++K+ NP  ++ISPGPG P +SGI
Sbjct: 2   ILIIDNYDSFTYNLAQCVGELGHDVLVCRNDEIDVVKIKKLNPEKIIISPGPGKPTESGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL  +  L   +P+ GVC+G Q IG   G
Sbjct: 62  SLDVISSLAEYIPILGVCLGHQSIGYING 90

Porphyra purpurea (taxid: 2787)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P20576|TRPG_PSEAE Anthranilate synthase component II OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=trpG PE=4 SV=2

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 63/89 (70%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY GEL    +V RNDEL+VE+++   P  +++SPGP  P ++G+
Sbjct: 2   LLMIDNYDSFTYNLVQYFGELKAEVKVVRNDELSVEQIEALAPERIVLSPGPCTPNEAGV 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL  +      +PL GVC+G Q IG+AFG
Sbjct: 62  SLAVIERFAGKLPLLGVCLGHQSIGQAFG 90

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q92370|TRPG_SCHPO Anthranilate synthase component 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trp1 PE=2 SV=2

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 3/101 (2%)

Query: 24  KNPIIVIDNYDSFTYNLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
           + PI++IDNYDSFT+N+ QY+  L   Y   V+RNDE+TV+EL++ NP  +++SPGPG P
Sbjct: 25  ERPIVMIDNYDSFTWNVVQYLSNLEKRYPIMVFRNDEITVDELEKLNPLKLVLSPGPGHP 84

Query: 82  -QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSA 121
            +D GI  + +      +P+ GVCMGLQCI E  G    SA
Sbjct: 85  ARDGGICNEAISRFAGKIPILGVCMGLQCIFETMGGKVDSA 125

Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|P09575|TRPG_PICAN Anthranilate synthase component 2 (Fragment) OS=Pichia angusta PE=4 SV=1

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 66/90 (73%), Gaps = 1/90 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSG 85
           +++IDNYDSFT+NL +Y+ + G + EV+RND++T+ E+++  P  V+ISPGPG P+ DSG
Sbjct: 8   VVMIDNYDSFTWNLYEYLCQEGANVEVFRNDQITIPEIEQLKPDVVVISPGPGHPRTDSG 67

Query: 86  ISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           IS   +      +P+FGVCMG QCI E FG
Sbjct: 68  ISRDVISHFKGKIPVFGVCMGQQCIFEEFG 97

Pichia angusta (taxid: 870730)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
356521181	276	PREDICTED: anthranilate synthase compone	0.714	0.344	0.957	3e-49
356558731	278	PREDICTED: anthranilate synthase compone	0.714	0.341	0.936	3e-48
356558733	272	PREDICTED: anthranilate synthase compone	0.714	0.349	0.936	3e-48
224101933	240	anthranilate synthase, beta subunit, ASB	0.714	0.395	0.936	3e-46
449449078	276	PREDICTED: anthranilate synthase compone	0.827	0.398	0.790	4e-46
217072976	270	unknown [Medicago truncatula] gi|3884985	0.729	0.359	0.877	1e-45
297822129	275	predicted protein [Arabidopsis lyrata su	0.827	0.4	0.808	1e-45
297817840	276	hypothetical protein ARALYDRAFT_484144 [	0.721	0.347	0.916	1e-45
147797773	179	hypothetical protein VITISV_018043 [Viti	0.849	0.631	0.773	1e-45
297845630	277	hypothetical protein ARALYDRAFT_472860 [	0.834	0.400	0.8	2e-45

>gi|356521181|ref|XP_003529236.1| PREDICTED: anthranilate synthase component II-like [Glycine max]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/95 (95%), Positives = 94/95 (98%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K+N NPI+VIDNYDSFTYNLCQYMGELG+HFEVYRNDELTVEELKRKNPRGVLISPGPGA
Sbjct: 70  KSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELKRKNPRGVLISPGPGA 129

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG
Sbjct: 130 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558731|ref|XP_003547656.1| PREDICTED: anthranilate synthase component II-like isoform 1 [Glycine max]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 93/95 (97%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K+N NPI+VIDNYDSFTYNLCQYMGELG+HFEVYRNDELTVEEL+RKNPRGVLISPGPG 
Sbjct: 72  KSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELRRKNPRGVLISPGPGE 131

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG
Sbjct: 132 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558733|ref|XP_003547657.1| PREDICTED: anthranilate synthase component II-like isoform 2 [Glycine max]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 93/95 (97%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K+N NPI+VIDNYDSFTYNLCQYMGELG+HFEVYRNDELTVEEL+RKNPRGVLISPGPG 
Sbjct: 66  KSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELRRKNPRGVLISPGPGE 125

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG
Sbjct: 126 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101933|ref|XP_002312481.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa] gi|222852301|gb|EEE89848.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 90/95 (94%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K  KNPIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVE+LKRK PRGVLISPGPG 
Sbjct: 36  KGIKNPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEDLKRKKPRGVLISPGPGT 95

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG
Sbjct: 96  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449078|ref|XP_004142292.1| PREDICTED: anthranilate synthase component II-like [Cucumis sativus] gi|449513110|ref|XP_004164233.1| PREDICTED: anthranilate synthase component II-like [Cucumis sativus]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/110 (79%), Positives = 99/110 (90%)

Query: 6   AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK 65
           +V +++S       +K  +NPIIVIDNYDSFTYNLCQY+GELG HFEVYRND+LTV+EL+
Sbjct: 52  SVSVNESNSRTSSLNKKTQNPIIVIDNYDSFTYNLCQYVGELGCHFEVYRNDDLTVDELR 111

Query: 66  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           RKNPRG+LISPGPGAPQDSGISLQTVLELGPT+PLFGVCMGLQCIGEAFG
Sbjct: 112 RKNPRGILISPGPGAPQDSGISLQTVLELGPTIPLFGVCMGLQCIGEAFG 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072976|gb|ACJ84848.1| unknown [Medicago truncatula] gi|388498572|gb|AFK37352.1| unknown [Medicago truncatula]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/98 (87%), Positives = 94/98 (95%), Gaps = 1/98 (1%)

Query: 18  KKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77
           +KSK+N +PI+VIDNYDSFTYNLCQY+GELG HFEVYRNDELTVEELKRKNPRGVLISPG
Sbjct: 62  EKSKSN-DPIVVIDNYDSFTYNLCQYIGELGVHFEVYRNDELTVEELKRKNPRGVLISPG 120

Query: 78  PGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           PG PQDSGISLQTV ELGPT+P+FGVCMGLQC+GEAFG
Sbjct: 121 PGTPQDSGISLQTVFELGPTIPVFGVCMGLQCMGEAFG 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822129|ref|XP_002878947.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297324786|gb|EFH55206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 98/115 (85%), Gaps = 5/115 (4%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           M +AE+ PI   +      SK N  PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELT
Sbjct: 53  MEMAESNPIPSVV----NSSKQN-GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELT 107

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           +EEL+RKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFG
Sbjct: 108 IEELERKNPRGVLISPGPGTPQDSGISLQTVLELGPFVPLFGVCMGLQCIGEAFG 162

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817840|ref|XP_002876803.1| hypothetical protein ARALYDRAFT_484144 [Arabidopsis lyrata subsp. lyrata] gi|297322641|gb|EFH53062.1| hypothetical protein ARALYDRAFT_484144 [Arabidopsis lyrata subsp. lyrata]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/96 (91%), Positives = 88/96 (91%)

Query: 20  SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG 79
           S     PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVEELKRKNPRGVLISPGPG
Sbjct: 68  SSKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPG 127

Query: 80  APQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
            PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFG
Sbjct: 128 TPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFG 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797773|emb|CAN74085.1| hypothetical protein VITISV_018043 [Vitis vinifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 103/119 (86%), Gaps = 6/119 (5%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           M++AE+   S+S  LD+      KNPI+VIDNYDSFTYNLCQY+GELG +FEVYRNDEL+
Sbjct: 64  MSIAESN--SRSPVLDN----GTKNPIVVIDNYDSFTYNLCQYLGELGCNFEVYRNDELS 117

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAF 119
           VEELK+KNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFG  +F
Sbjct: 118 VEELKKKNPRGVLISPGPGTPQDSGISLQTVLELGPVVPLFGVCMGLQCIGEAFGGKSF 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845630|ref|XP_002890696.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata] gi|297336538|gb|EFH66955.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 99/115 (86%), Gaps = 4/115 (3%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           MA + ++P   S+ ++  K +N   PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELT
Sbjct: 54  MADSNSIP---SVVVNSSK-QNGYGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELT 109

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           VEELK KNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFG
Sbjct: 110 VEELKNKNPRGVLISPGPGTPQDSGISLQTVLELGPRVPLFGVCMGLQCIGEAFG 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2174378	273	AT5G57890 [Arabidopsis thalian	0.706	0.344	0.914	8.1e-44
TAIR|locus:2826092	222	AT1G24909 [Arabidopsis thalian	0.676	0.405	0.955	3.5e-43
TAIR|locus:2826077	222	AT1G25083 [Arabidopsis thalian	0.676	0.405	0.955	3.5e-43
TAIR|locus:2825965	222	AT1G25155 [Arabidopsis thalian	0.676	0.405	0.955	3.5e-43
TAIR|locus:2826037	235	AT1G24807 [Arabidopsis thalian	0.676	0.382	0.834	1.1e-39
UNIPROTKB|Q48NP9	199	trpG "Anthranilate synthase, c	0.669	0.447	0.505	1.8e-23
UNIPROTKB|Q88A05	199	trpG "Anthranilate synthase, c	0.669	0.447	0.494	7.8e-23
TIGR_CMR|CHY_1586	189	CHY_1586 "para-aminobenzoate/a	0.669	0.470	0.528	1.3e-22
UNIPROTKB|Q4K501	197	trpG "Anthranilate synthase, c	0.669	0.451	0.494	3.4e-22
TIGR_CMR|BA_1249	195	BA_1249 "para-aminobenzoate sy	0.669	0.456	0.483	7e-22

TAIR|locus:2174378 AT5G57890 [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 86/94 (91%), Positives = 88/94 (93%)

Query:    22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
             N+  PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVEELKRK PRG+LISPGPG P
Sbjct:    67 NSSGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKKPRGLLISPGPGTP 126

Query:    82 QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             QDSGISLQTVLELGP VPLFGVCMGLQCIGEAFG
Sbjct:   127 QDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFG 160

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0000162 "tryptophan biosynthetic process" evidence=TAS

GO:0004049 "anthranilate synthase activity" evidence=IGI

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2826092 AT1G24909 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 86/90 (95%), Positives = 86/90 (95%)

Query:    26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
             PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSG
Sbjct:    20 PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSG 79

Query:    86 ISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             ISLQTVLELGP VPLFGVCMGLQCIGEAFG
Sbjct:    80 ISLQTVLELGPLVPLFGVCMGLQCIGEAFG 109

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2826077 AT1G25083 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 86/90 (95%), Positives = 86/90 (95%)

Query:    26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
             PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSG
Sbjct:    20 PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSG 79

Query:    86 ISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             ISLQTVLELGP VPLFGVCMGLQCIGEAFG
Sbjct:    80 ISLQTVLELGPLVPLFGVCMGLQCIGEAFG 109

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2825965 AT1G25155 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 86/90 (95%), Positives = 86/90 (95%)

Query:    26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
             PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSG
Sbjct:    20 PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSG 79

Query:    86 ISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             ISLQTVLELGP VPLFGVCMGLQCIGEAFG
Sbjct:    80 ISLQTVLELGPLVPLFGVCMGLQCIGEAFG 109

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2826037 AT1G24807 [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 86/103 (83%), Positives = 86/103 (83%)

Query:    26 PIIVIDNYDSFTYNLCQY-------------MGELGYHFEVYRNDELTVEELKRKNPRGV 72
             PIIVIDNYDSFTYNLCQY             MGEL  HFEVYRNDELTVEELKRKNPRGV
Sbjct:    20 PIIVIDNYDSFTYNLCQYKQNFENCYLFLQYMGELQCHFEVYRNDELTVEELKRKNPRGV 79

Query:    73 LISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             LISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFG
Sbjct:    80 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFG 122

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q48NP9 trpG "Anthranilate synthase, component II" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 45/89 (50%), Positives = 67/89 (75%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYN+ QY+GELG   +V RNDELT+E+++  NP  +++SPGP  P ++G+
Sbjct:     2 LLMIDNYDSFTYNVVQYLGELGADVKVIRNDELTIEQIEALNPERIVVSPGPCTPNEAGV 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             SL+ +      +P+ GVC+G Q IG+AFG
Sbjct:    62 SLEVIKHFAGKLPILGVCLGHQSIGQAFG 90

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

UNIPROTKB|Q88A05 trpG "Anthranilate synthase, component II" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 44/89 (49%), Positives = 66/89 (74%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYN+ QY+GELG   +V RNDELT+ +++  NP  +++SPGP  P ++G+
Sbjct:     2 LLMIDNYDSFTYNVVQYLGELGADVKVIRNDELTIAQIEALNPERIVVSPGPCTPNEAGV 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             SL+ +      +P+ GVC+G Q IG+AFG
Sbjct:    62 SLEVIKHFAGKLPILGVCLGHQSIGQAFG 90

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

TIGR_CMR|CHY_1586 CHY_1586 "para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 47/89 (52%), Positives = 63/89 (70%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             I++IDNYDSFTYNL QY+GELG+   V RND +T+ E++   P  ++ISPGP  P ++GI
Sbjct:     2 ILLIDNYDSFTYNLVQYLGELGHRVVVRRNDRITLSEIREMKPTHIIISPGPCTPNEAGI 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             SL  V      +P+ GVC+G Q IG+AFG
Sbjct:    62 SLDVVRFFAGKIPILGVCLGHQVIGQAFG 90

GO:0004049 "anthranilate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

UNIPROTKB|Q4K501 trpG "Anthranilate synthase, component II" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 44/89 (49%), Positives = 65/89 (73%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYN+ QY+GELG   +V RNDELTV +++   P  +++SPGP  P ++GI
Sbjct:     2 LLMIDNYDSFTYNVVQYLGELGAEVKVVRNDELTVAQIEALKPERIVVSPGPCTPTEAGI 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             S++ +      +P+ GVC+G Q IG+AFG
Sbjct:    62 SIEAIKHFAGKLPILGVCLGHQSIGQAFG 90

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

TIGR_CMR|BA_1249 BA_1249 "para-aminobenzoate synthase glutamine amidotransferase, component II" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 43/89 (48%), Positives = 64/89 (71%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             I++IDNYDSFTYNL Q +GE      V RND++T+E+L+  NP+G+++SPGPG P+++GI
Sbjct:     2 IVLIDNYDSFTYNLYQLLGEYEEEIVVVRNDQITIEQLEEMNPKGIVLSPGPGKPEEAGI 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
              ++ +      VP+ G+C+G Q I  AFG
Sbjct:    62 CIEVIRHFYKNVPILGICLGHQAIISAFG 90

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ASB2	anthranilate synthase, beta subunit, ASB2 (EC-4.1.3.27) (240 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XII.1858.1	anthranilate phosphoribosyltransferase (EC-2.4.2.18) (334 aa)	•	•	•	•		•	•		0.999
	gw1.10136.5.1	annotation not avaliable (270 aa)	•	•	•		•	•	•		0.979
	fgenesh4_pg.C_scaffold_1312000004	Predicted protein (245 aa)	•	•	•			•	•		0.959
	CS1	chorismate synthase (EC-4.2.3.5) (438 aa)	•		•			•	•		0.958
	CS2	RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa)	•		•			•	•		0.958
	ASA2	anthranilate synthase, alpha subunit 2 (EC-4.1.3.27) (530 aa)	•	•	•		•	•	•		0.954
	estExt_fgenesh4_pm.C_LG_XIV0483	indole-3-glycerol-phosphate synthase (EC-4.1.1.48) (259 aa)	•	•	•			•	•		0.953
	ASA1	anthranilate synthase, alpha subunit 1 (EC-4.1.3.27) (532 aa)	•	•	•		•	•	•		0.951
	CM1|CM	chorismate mutase (EC-5.4.99.5) (258 aa)						•			0.899
	CM1	chorismate mutase (EC-5.4.99.5) (257 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
PLN02335	222	PLN02335, PLN02335, anthranilate synthase	2e-71
PRK05670	189	PRK05670, PRK05670, anthranilate synthase componen	5e-47
cd01743	184	cd01743, GATase1_Anthranilate_Synthase, Type 1 glu	9e-45
COG0512	191	COG0512, PabA, Anthranilate/para-aminobenzoate syn	3e-43
CHL00101	190	CHL00101, trpG, anthranilate synthase component 2	5e-38
PRK14607	534	PRK14607, PRK14607, bifunctional glutamine amidotr	2e-36
PRK07649	195	PRK07649, PRK07649, para-aminobenzoate/anthranilat	4e-35
PRK07765	214	PRK07765, PRK07765, para-aminobenzoate synthase co	7e-34
PRK06774	191	PRK06774, PRK06774, para-aminobenzoate synthase co	3e-31
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	1e-30
PRK08007	187	PRK08007, PRK08007, para-aminobenzoate synthase co	2e-30
PRK08857	193	PRK08857, PRK08857, para-aminobenzoate synthase co	4e-29
TIGR00566	188	TIGR00566, trpG_papA, glutamine amidotransferase o	7e-28
PRK05637	208	PRK05637, PRK05637, anthranilate synthase componen	2e-18
PRK13566	720	PRK13566, PRK13566, anthranilate synthase; Provisi	3e-18
PRK09522	531	PRK09522, PRK09522, bifunctional glutamine amidotr	2e-17
PLN02889	918	PLN02889, PLN02889, oxo-acid-lyase/anthranilate sy	9e-15
TIGR01815	717	TIGR01815, TrpE-clade3, anthranilate synthase, alp	3e-13
TIGR00888	188	TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd	3e-11
TIGR01368	358	TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt	1e-10
PRK12564	360	PRK12564, PRK12564, carbamoyl phosphate synthase s	2e-10
PRK06895	190	PRK06895, PRK06895, putative anthranilate synthase	2e-10
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	3e-10
PLN02771	415	PLN02771, PLN02771, carbamoyl-phosphate synthase (	6e-10
PRK12838	354	PRK12838, PRK12838, carbamoyl phosphate synthase s	9e-10
CHL00197	382	CHL00197, carA, carbamoyl-phosphate synthase argin	1e-09
PRK00074	511	PRK00074, guaA, GMP synthase; Reviewed	3e-09
cd01742	181	cd01742, GATase1_GMP_Synthase, Type 1 glutamine am	6e-09
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	3e-08
COG0505	368	COG0505, CarA, Carbamoylphosphate synthase small s	3e-08
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	3e-08
TIGR01823	742	TIGR01823, PabB-fungal, aminodeoxychorismate synth	9e-08
COG0518	198	COG0518, GuaA, GMP synthase - Glutamine amidotrans	3e-07
PRK00758	184	PRK00758, PRK00758, GMP synthase subunit A; Valida	4e-06

>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase

 Score =  212 bits (542), Expect = 2e-71
 Identities = 87/92 (94%), Positives = 87/92 (94%)

Query: 24  KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD 83
             PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVEELKRKNPRGVLISPGPG PQD
Sbjct: 18  NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQD 77

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SGISLQTVLELGP VPLFGVCMGLQCIGEAFG
Sbjct: 78  SGISLQTVLELGPLVPLFGVCMGLQCIGEAFG 109

Length = 222

>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional

 Score =  149 bits (379), Expect = 5e-47
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+GELG    VYRNDE+T+EE++  NP  +++SPGPG P ++GI
Sbjct: 2   ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL+ + E    VP+ GVC+G Q IGEAFG
Sbjct: 62  SLELIREFAGKVPILGVCLGHQAIGEAFG 90

Length = 189

>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

 Score =  143 bits (364), Expect = 9e-45
 Identities = 53/89 (59%), Positives = 67/89 (75%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+ ELG    V RNDE+T+EEL+  NP  ++ISPGPG P+D+GI
Sbjct: 1   ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGI 60

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL+ +  L   VP+ GVC+G Q I EAFG
Sbjct: 61  SLEIIRALAGKVPILGVCLGHQAIAEAFG 89

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184

>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

 Score =  140 bits (355), Expect = 3e-43
 Identities = 46/89 (51%), Positives = 64/89 (71%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+ ELG    V RND++++E ++   P  ++ISPGPG P+D+GI
Sbjct: 4   ILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGI 63

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL+ +      +P+ GVC+G Q I EAFG
Sbjct: 64  SLELIRRFAGRIPILGVCLGHQAIAEAFG 92

Length = 191

>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2

 Score =  126 bits (319), Expect = 5e-38
 Identities = 48/89 (53%), Positives = 62/89 (69%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL Q +GEL     V RNDE+ + ++K  N R ++ISPGPG P+DSGI
Sbjct: 2   ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL  +    P +P+ GVC+G Q IG  FG
Sbjct: 62  SLDVISSYAPYIPILGVCLGHQSIGYLFG 90

Length = 190

>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score =  129 bits (327), Expect = 2e-36
 Identities = 51/90 (56%), Positives = 68/90 (75%), Gaps = 1/90 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
           II+IDNYDSFTYN+ QY+GELG    EV RNDE+T+EE++  NP  ++ISPGPG P+++G
Sbjct: 2   IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAG 61

Query: 86  ISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           IS++ +      VP+ GVC+G Q IG AFG
Sbjct: 62  ISVEVIRHFSGKVPILGVCLGHQAIGYAFG 91

Length = 534

>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

 Score =  119 bits (300), Expect = 4e-35
 Identities = 42/89 (47%), Positives = 64/89 (71%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFT+NL Q++GELG    V RNDE+T+ +++   P  ++ISPGP +P ++GI
Sbjct: 2   ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           S++ +      +P+FGVC+G Q I + FG
Sbjct: 62  SMEVIRYFAGKIPIFGVCLGHQSIAQVFG 90

Length = 195

>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional

 Score =  117 bits (294), Expect = 7e-34
 Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPR--GVLISPGPGAPQDS 84
           I+V+DNYDSF +NL QY+G+LG   EV+RND+  + +      +  GVL+SPGPG P+ +
Sbjct: 3   ILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA 62

Query: 85  GISLQTVLELGPT-VPLFGVCMGLQCIGEAFG 115
           G S+  V        PL GVC+G Q IG AFG
Sbjct: 63  GASIDMVRACAAAGTPLLGVCLGHQAIGVAFG 94

Length = 214

>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional

 Score =  109 bits (274), Expect = 3e-31
 Identities = 43/89 (48%), Positives = 61/89 (68%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY  ELG    V RNDEL + ++++  P  ++ISPGP  P ++GI
Sbjct: 2   LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL  +      +P+ GVC+G Q +G+AFG
Sbjct: 62  SLAVIRHFADKLPILGVCLGHQALGQAFG 90

Length = 191

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score =  107 bits (270), Expect = 1e-30
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 2/89 (2%)

Query: 28  IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS 87
           ++IDN DSFTYNL + + ELG   EV  ND    EE+   NP G++ISPGPG+P   G +
Sbjct: 1   LLIDNGDSFTYNLARALRELGVEVEVVPNDT-PAEEILELNPDGIIISPGPGSPGALGGA 59

Query: 88  LQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115
           ++ + EL    +P+ G+C+G Q +  AFG
Sbjct: 60  IEAIKELRENKIPILGICLGHQLLALAFG 88

Length = 186

>gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional

 Score =  107 bits (268), Expect = 2e-30
 Identities = 42/89 (47%), Positives = 59/89 (66%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFT+NL QY  ELG    V RND LT+ ++    P+ ++ISPGP  P ++GI
Sbjct: 2   ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL  +      +P+ GVC+G Q + +AFG
Sbjct: 62  SLDVIRHYAGRLPILGVCLGHQAMAQAFG 90

Length = 187

>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional

 Score =  104 bits (260), Expect = 4e-29
 Identities = 43/89 (48%), Positives = 61/89 (68%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY  ELG   +V RNDE+ ++ ++  NP  ++ISPGP  P ++GI
Sbjct: 2   LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SLQ +      +P+ GVC+G Q I + FG
Sbjct: 62  SLQAIEHFAGKLPILGVCLGHQAIAQVFG 90

Length = 193

>gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

 Score =  100 bits (251), Expect = 7e-28
 Identities = 44/89 (49%), Positives = 62/89 (69%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY  ELG    V RND LT++E++   P  ++ISPGP  P ++GI
Sbjct: 2   VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL+ +      +P+ GVC+G Q +G+AFG
Sbjct: 62  SLEAIRHFAGKLPILGVCLGHQAMGQAFG 90

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the PFAM model GATase. Length = 188

>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional

 Score = 76.8 bits (189), Expect = 2e-18
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDN+DSF YNL       GY   V+RN  + VEE+   NP  + +SPGPG P+D+G 
Sbjct: 4   VVLIDNHDSFVYNLVDAFAVAGYKCTVFRN-TVPVEEILAANPDLICLSPGPGHPRDAGN 62

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
            +  +      +PL G+C+G Q + E  G
Sbjct: 63  MMALIDRTLGQIPLLGICLGFQALLEHHG 91

Length = 208

>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional

 Score = 79.2 bits (196), Expect = 3e-18
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           ++++D+ DSF + L  Y  + G      R      E L R NP  V++SPGPG P D   
Sbjct: 529 VLLVDHEDSFVHTLANYFRQTGAEVTTVRYG-FAEEMLDRVNPDLVVLSPGPGRPSDFDC 587

Query: 87  S--LQTVLELGPTVPLFGVCMGLQCIGEAFG 115
              +   L     +P+FGVC+GLQ I EAFG
Sbjct: 588 KATIDAALARN--LPIFGVCLGLQAIVEAFG 616

Length = 720

>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFTYNL   +   G++  +YRN    +  +E L   +   +++SPGPG P +
Sbjct: 4   ILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSE 63

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           +G   + +  L   +P+ G+C+G Q I EA+G
Sbjct: 64  AGCMPELLTRLRGKLPIIGICLGHQAIVEAYG 95

Length = 531

>gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase

 Score = 69.1 bits (169), Expect = 9e-15
 Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 10/97 (10%)

Query: 28  IVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEEL-----KRKNPRGVLISPGPGAP 81
           ++IDNYDS+TYN+ Q +  + G    V RNDE T EE+     + K    ++ISPGPG+P
Sbjct: 85  LLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSP 144

Query: 82  ---QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
               D GI L+ +LE    +P+ GVC+G Q +G   G
Sbjct: 145 TCPADIGICLRLLLEC-RDIPILGVCLGHQALGYVHG 180

Length = 918

>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade

 Score = 64.9 bits (158), Expect = 3e-13
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++D+ DSF + L  Y+ + G      R+          + P  V++SPGPG P D  +
Sbjct: 519 ILLVDHEDSFVHTLANYLRQTGASVTTLRHS-HAEAAFDERRPDLVVLSPGPGRPADFDV 577

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           +      L   +P+FGVC+GLQ + EAFG
Sbjct: 578 AGTIDAALARGLPVFGVCLGLQGMVEAFG 606

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717

>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

 Score = 57.3 bits (139), Expect = 3e-11
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+V+D    +T  + + + ELG + E+  N    +EE++ KNP+G+++S GP +      
Sbjct: 1   ILVLDFGSQYTQLIARRLRELGVYSELVPNTT-PLEEIREKNPKGIILSGGPSSVYAENA 59

Query: 87  --SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
             + + + ELG  VP+ G+C G+Q + +  G
Sbjct: 60  PRADEKIFELG--VPVLGICYGMQLMAKQLG 88

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188

>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 22/54 (40%), Positives = 36/54 (66%)

Query: 62  EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           EE+K+ NP G+ +S GPG P     +++T+ +L   +P+FG+C+G Q +  AFG
Sbjct: 208 EEIKKYNPDGIFLSNGPGDPAAVKPAIETIRKLLEKIPIFGICLGHQLLALAFG 261

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 358

>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed

 Score = 56.6 bits (138), Expect = 2e-10
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 60  TVEELKRKNPRGVLISPGPGAPQ--DSGISL-QTVLELGPTVPLFGVCMGLQCIGEAFG 115
           T EE+   NP GV +S GPG P   D  I + + +LE    +P+FG+C+G Q +  A G
Sbjct: 210 TAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKK--IPIFGICLGHQLLALALG 266

Length = 360

>gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++I+N+DSFT+NL   + +LG   +V   ++L ++E+  +N   +LISPGP  P+    
Sbjct: 4   LLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEV--ENFSHILISPGPDVPRAYPQ 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
               +        + GVC+G Q + E FG
Sbjct: 62  LFAMLERYHQHKSILGVCLGHQTLCEFFG 90

Length = 190

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 54.8 bits (133), Expect = 3e-10
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 60  TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 115
             EE+ + +P G+ +S GPG P     +++TV + LG  +P+FG+C+G Q +  A G
Sbjct: 31  DAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALG 87

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing)

 Score = 55.4 bits (133), Expect = 6e-10
 Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 62  EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAF 119
           E LK K P GVL S GPG P     +++TV EL   VP+FG+CMG Q +G+A G   F
Sbjct: 276 EALKMK-PDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGKTF 332

Length = 415

>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed

 Score = 54.5 bits (132), Expect = 9e-10
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 60  TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           ++EE+K  NP G+++S GPG P++    L  + +L  + P+ G+C+G Q I  A G
Sbjct: 200 SLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALG 255

Length = 354

>gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 8   PISKSLYLDDKKSKNNKNP--IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK 65
               S YL D K  ++     IIVID      YN+ + +   G    V        +++ 
Sbjct: 174 KSHPSFYLADNKRPHSSYQLKIIVIDF--GVKYNILRRLKSFGCSITVV-PATSPYQDIL 230

Query: 66  RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGDCAF 119
              P G+L+S GPG P      ++TV + L   +P+FG+CMG Q +  A     F
Sbjct: 231 SYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTF 285

Length = 382

>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed

 Score = 53.1 bits (129), Expect = 3e-09
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 29/108 (26%)

Query: 22  NNKNPIIVIDNYDSFTYNLCQY-------MGELGYHFEVYRNDELTVEELKRKNPRGVLI 74
            + + I+++D + S      QY       + ELG + E+   D  + EE++  NP+G+++
Sbjct: 1   IHHDKILILD-FGS------QYTQLIARRVRELGVYSEIVPYDI-SAEEIRAFNPKGIIL 52

Query: 75  SPGP------GAPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           S GP      GAP+ D  I      ELG  VP+ G+C G+Q +    G
Sbjct: 53  SGGPASVYEEGAPRADPEI-----FELG--VPVLGICYGMQLMAHQLG 93

Length = 511

>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GA 80
           I+++D    +T+ + + + ELG + E+  N    +EE+K KNP+G+++S GP       A
Sbjct: 1   ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDA 59

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           P+        + ELG  VP+ G+C G+Q I +A G
Sbjct: 60  PRVD----PEIFELG--VPVLGICYGMQLIAKALG 88

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 27  IIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQ 82
           + V+    S      +    + E G   +V   D   VE ++   +  G+++  GPG P 
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 83  DSGIS------LQTVLELGPTVPLFGVCMGLQCI 110
           D          L+     G   P+ G+C+G Q +
Sbjct: 61  DLAWDEALLALLREAAAAG--KPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 55  RNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106
           R   +TV       EE+   NP G+ +S GPG P     +++T+ EL G  +P+FG+C+G
Sbjct: 200 RGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLG 259

Query: 107 LQCIGEAFG 115
            Q +  A G
Sbjct: 260 HQLLALALG 268

Length = 368

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 27  IIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQ 82
           + V+           +    + E G   +V   D   VE ++   +  G+++  GPG P 
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 83  DSGIS------LQTVLELGPTVPLFGVCMGLQCI 110
           D          L+     G   P+ G+C+G Q +
Sbjct: 61  DLARDEALLALLREAAAAG--KPILGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade

 Score = 49.1 bits (117), Expect = 9e-08
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 14/97 (14%)

Query: 23  NKNPIIVIDNYDSFTYNLCQYM---GELGYHFEVYRNDELT---VEELKRKNPRGVLISP 76
            +  ++ ID+YDSFTYN+ + +    ++  H     +D      +E L   +   +++ P
Sbjct: 4   QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFD--AIVVGP 61

Query: 77  GPGAP---QDSGISLQTVLEL--GPTVPLFGVCMGLQ 108
           GPG P   QD GI +  + EL     VP+ G+C+G Q
Sbjct: 62  GPGNPNNAQDMGI-ISELWELANLDEVPVLGICLGFQ 97

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742

>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 26  PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
            I+++D    +   + + + ELGY +          EEL   +P G++IS GP +  D  
Sbjct: 3   KILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDED 62

Query: 86  ISLQTVLEL-----GPTVPLFGVCMGLQCIGEAFG 115
             L    +L      P  P+ G+C+G Q + +A G
Sbjct: 63  PWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALG 97

Length = 198

>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 26  PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
            I+V+DN   + + + + +  LG   ++  N    VEE+K     G+++S GP   + +G
Sbjct: 1   KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIK-AFEDGLILSGGPDI-ERAG 57

Query: 86  ISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
              + + EL   VP+ G+C+G Q I +AFG
Sbjct: 58  NCPEYLKELD--VPILGICLGHQLIAKAFG 85

Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.97
PRK08007	187	para-aminobenzoate synthase component II; Provisio	99.96
PRK06774	191	para-aminobenzoate synthase component II; Provisio	99.96
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	99.96
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	99.96
PRK05670	189	anthranilate synthase component II; Provisional	99.95
CHL00101	190	trpG anthranilate synthase component 2	99.95
PRK08857	193	para-aminobenzoate synthase component II; Provisio	99.95
PLN02335	222	anthranilate synthase	99.94
PRK06895	190	putative anthranilate synthase component II; Provi	99.94
PRK05637	208	anthranilate synthase component II; Provisional	99.94
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.92
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.92
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.91
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.91
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.91
KOG0026	223	consensus Anthranilate synthase, beta chain [Amino	99.9
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.9
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.9
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	99.89
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.89
PRK00758	184	GMP synthase subunit A; Validated	99.88
PLN02347	536	GMP synthetase	99.88
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	99.88
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.88
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	99.88
PRK13566	720	anthranilate synthase; Provisional	99.88
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.88
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	99.87
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	99.87
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	99.87
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	99.86
PRK00074	511	guaA GMP synthase; Reviewed	99.86
PRK06490	239	glutamine amidotransferase; Provisional	99.86
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.85
PRK07053	234	glutamine amidotransferase; Provisional	99.84
PRK05665	240	amidotransferase; Provisional	99.79
PRK09065	237	glutamine amidotransferase; Provisional	99.79
PRK08250	235	glutamine amidotransferase; Provisional	99.78
PRK07567	242	glutamine amidotransferase; Provisional	99.77
KOG1622	552	consensus GMP synthase [Nucleotide transport and m	99.73
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	99.73
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.73
KOG1224	767	consensus Para-aminobenzoate (PABA) synthase ABZ1	99.73
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.72
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.7
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	99.69
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.68
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	99.68
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.67
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	99.67
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.66
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	99.64
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	99.63
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.63
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	99.63
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	99.6
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	99.6
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	99.59
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	99.59
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.57
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	99.55
COG2071	243	Predicted glutamine amidotransferases [General fun	99.54
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	99.54
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	99.53
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	99.5
PRK05380	533	pyrG CTP synthetase; Validated	99.47
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.45
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.45
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	99.43
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	99.41
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.41
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.37
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	99.33
PRK05368	302	homoserine O-succinyltransferase; Provisional	99.33
PLN02327	557	CTP synthase	99.31
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	99.31
PRK06186	229	hypothetical protein; Validated	99.3
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	99.29
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.25
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	99.2
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	99.12
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.91
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	98.88
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.88
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	98.77
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	98.73
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.72
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	98.71
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	98.66
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	98.65
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	98.65
PRK00784	488	cobyric acid synthase; Provisional	98.64
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.56
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	98.56
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	98.54
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.52
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.52
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.49
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.47
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	98.45
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	98.41
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	98.41
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	98.37
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	98.36
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	98.32
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	98.32
TIGR00313	475	cobQ cobyric acid synthase CobQ.	98.23
PRK04155	287	chaperone protein HchA; Provisional	98.23
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	98.22
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	98.21
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	98.21
PHA03366	1304	FGAM-synthase; Provisional	98.2
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	98.18
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.14
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	98.1
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	98.07
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	97.99
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	97.95
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	97.92
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	97.87
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	97.87
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.87
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.86
PRK11249	752	katE hydroperoxidase II; Provisional	97.85
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	97.69
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	97.61
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	97.6
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	97.56
KOG2764	247	consensus Putative transcriptional regulator DJ-1	97.49
COG3442	250	Predicted glutamine amidotransferase [General func	97.46
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	97.28
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	97.24
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	97.15
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.06
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	96.91
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	96.9
KOG1559	340	consensus Gamma-glutamyl hydrolase [Coenzyme trans	96.79
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	96.77
COG1897	307	MetA Homoserine trans-succinylase [Amino acid tran	95.85
PRK04539	296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.83
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	95.53
PRK01911	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.43
PRK03708	277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.42
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	95.38
PRK02155	291	ppnK NAD(+)/NADH kinase family protein; Provisiona	95.35
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	95.31
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	95.11
PRK03372	306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	94.91
PRK03378	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	94.84
cd00886	152	MogA_MoaB MogA_MoaB family. Members of this family	94.5
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	94.32
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	94.01
PRK02649	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	93.9
PRK14077	287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	93.83
TIGR02667	163	moaB_proteo molybdenum cofactor biosynthesis prote	93.67
COG4635	175	HemG Flavodoxin [Energy production and conversion	93.47
PLN02929	301	NADH kinase	93.31
smart00852	135	MoCF_biosynth Probable molybdopterin binding domai	92.79
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	92.65
PF00072	112	Response_reg: Response regulator receiver domain;	92.63
PRK01231	295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	92.55
PRK05569	141	flavodoxin; Provisional	92.47
COG4090	154	Uncharacterized protein conserved in archaea [Func	92.41
PRK04885	265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	92.38
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	92.36
PRK14076	569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	92.03
PRK14075	256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	91.98
PF09897	147	DUF2124: Uncharacterized protein conserved in arch	91.82
COG3155	217	ElbB Uncharacterized protein involved in an early	91.04
PRK02231	272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	90.92
COG4977	328	Transcriptional regulator containing an amidase do	90.54
PRK00561	259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	90.4
PRK06703	151	flavodoxin; Provisional	90.22
PF06490	109	FleQ: Flagellar regulatory protein FleQ; InterPro:	90.04
TIGR01754	140	flav_RNR ribonucleotide reductase-associated flavo	89.99
PRK09468	239	ompR osmolarity response regulator; Provisional	89.91
PLN02935	508	Bifunctional NADH kinase/NAD(+) kinase	89.44
PRK10816	223	DNA-binding transcriptional regulator PhoP; Provis	89.01
cd00758	133	MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) bindin	88.93
PLN02727	986	NAD kinase	88.72
PRK01185	271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	88.57
CHL00148	240	orf27 Ycf27; Reviewed	88.52
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	88.21
PF06283	217	ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.	88.18
TIGR00177	144	molyb_syn molybdenum cofactor synthesis domain. Th	87.94
cd00885	170	cinA Competence-damaged protein. CinA is the first	87.75
PRK05568	142	flavodoxin; Provisional	87.75
PRK01215	264	competence damage-inducible protein A; Provisional	87.62
PRK10336	219	DNA-binding transcriptional regulator QseB; Provis	87.11
PRK14690	419	molybdopterin biosynthesis protein MoeA; Provision	86.47
PRK11083	228	DNA-binding response regulator CreB; Provisional	86.36
PRK09836	227	DNA-binding transcriptional activator CusR; Provis	86.09
PF01513	285	NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me	86.01
KOG1467	556	consensus Translation initiation factor 2B, delta	85.73
TIGR01755	197	flav_wrbA NAD(P)H:quinone oxidoreductase, type IV.	85.06
PRK03673	396	hypothetical protein; Provisional	84.61
COG0303	404	MoeA Molybdopterin biosynthesis enzyme [Coenzyme m	84.34
TIGR00200	413	cinA_nterm competence/damage-inducible protein Cin	84.29
PRK10161	229	transcriptional regulator PhoB; Provisional	84.19
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	83.83
COG0521	169	MoaB Molybdopterin biosynthesis enzymes [Coenzyme	83.8
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	83.75
PRK06242	150	flavodoxin; Provisional	83.71
PRK13435	145	response regulator; Provisional	83.27
PRK15029	755	arginine decarboxylase; Provisional	82.57
PRK00549	414	competence damage-inducible protein A; Provisional	82.51
PRK12359	172	flavodoxin FldB; Provisional	82.46
PRK09271	160	flavodoxin; Provisional	82.44
COG0429	345	Predicted hydrolase of the alpha/beta-hydrolase fo	82.29
PRK10643	222	DNA-binding transcriptional regulator BasR; Provis	82.26
smart00448	55	REC cheY-homologous receiver domain. CheY regulate	82.25
cd03522	312	MoeA_like MoeA_like. This domain is similar to a d	82.17
cd06284	267	PBP1_LacI_like_6 Ligand-binding domain of an uncha	81.97
PRK10355	330	xylF D-xylose transporter subunit XylF; Provisiona	81.9
PRK09267	169	flavodoxin FldA; Validated	81.83
PRK03670	252	competence damage-inducible protein A; Provisional	81.68
cd06292	273	PBP1_LacI_like_10 Ligand-binding domain of unchara	81.61
PRK09417	193	mogA molybdenum cofactor biosynthesis protein MogA	81.46
PRK03501	264	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	81.24
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	80.7
PRK10766	221	DNA-binding transcriptional regulator TorR; Provis	80.62
PRK03767	200	NAD(P)H:quinone oxidoreductase; Provisional	80.51
PF09075	48	STb_secrete: Heat-stable enterotoxin B, secretory;	80.43
PF00994	144	MoCF_biosynth: Probable molybdopterin binding doma	80.21
PRK15479	221	transcriptional regulatory protein TctD; Provision	80.2
COG1058	255	CinA Predicted nucleotide-utilizing enzyme related	80.14

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.97  E-value=6.1e-31  Score=194.56  Aligned_cols=109  Identities=45%  Similarity=0.781  Sum_probs=100.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI  103 (133)
                      +++|++|||+|||+++++++|++.|.++.+++++..+.+.+...++|+||||+|||+|.|.+...+.|+++..++|+|||
T Consensus         1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGV   80 (191)
T COG0512           1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGV   80 (191)
T ss_pred             CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE
Confidence            36899999999999999999999999999999875666666666899999999999999999888999998778999999


Q ss_pred             echHHHHHHHhCCeeeeccCCcceeeeee
Q 032797          104 CMGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus       104 ClG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      |+|||.|+++|||+|.+++++.||++|.|
T Consensus        81 CLGHQai~~~fGg~V~~a~~~~HGK~s~i  109 (191)
T COG0512          81 CLGHQAIAEAFGGKVVRAKEPMHGKTSII  109 (191)
T ss_pred             CccHHHHHHHhCCEEEecCCCcCCeeeee
Confidence            99999999999999999999999999965

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=99.96  E-value=2e-29  Score=187.25  Aligned_cols=106  Identities=42%  Similarity=0.712  Sum_probs=94.1

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl  105 (133)
                      ||++|||+|||++++.++|++.|+++.++++++.+.+++...++|+|||+|||++|.+.....++++.+..++|+||||+
T Consensus         1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGICl   80 (187)
T PRK08007          1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL   80 (187)
T ss_pred             CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECH
Confidence            48999999999999999999999999999987666777765689999999999999988777777777778899999999


Q ss_pred             hHHHHHHHhCCeeeeccCCcceeeee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      |||+||.++||+|.+.+..++|.++-
T Consensus        81 G~Q~la~a~Gg~v~~~~~~~~g~~~~  106 (187)
T PRK08007         81 GHQAMAQAFGGKVVRAAKVMHGKTSP  106 (187)
T ss_pred             HHHHHHHHcCCEEEeCCCcccCCceE
Confidence            99999999999999998877876543

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=99.96  E-value=2.3e-29  Score=186.95  Aligned_cols=107  Identities=43%  Similarity=0.769  Sum_probs=95.3

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl  105 (133)
                      ||++|||+|||++++++.|++.|+++++++++..+.+++...++|+||++|||++|.+.+...++++.++.++|+||||+
T Consensus         1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~   80 (191)
T PRK06774          1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL   80 (191)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH
Confidence            48999999999999999999999999999987566777766689999999999999988776777777778899999999


Q ss_pred             hHHHHHHHhCCeeeeccCCcceeeeee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      |||+||.++||+|.+.++.++|+++++
T Consensus        81 G~Qlla~~~GG~v~~~~~~~~G~~~~~  107 (191)
T PRK06774         81 GHQALGQAFGARVVRARQVMHGKTSAI  107 (191)
T ss_pred             HHHHHHHHhCCEEEeCCcceecceEEE
Confidence            999999999999999887788877654

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=99.96  E-value=2.1e-28  Score=182.99  Aligned_cols=105  Identities=43%  Similarity=0.775  Sum_probs=93.0

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl  105 (133)
                      ||+||||+|||++++.++|++.|+++.+++.++.+.+++...++|+|||+|||++|++.+...+.++.+..++|+||||+
T Consensus         1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGICl   80 (195)
T PRK07649          1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL   80 (195)
T ss_pred             CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcH
Confidence            58999999999999999999999999999987556666655689999999999999988766677777777899999999


Q ss_pred             hHHHHHHHhCCeeeeccCCcceeee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      |||+|+.++||+|.+.+..++|..+
T Consensus        81 G~Qlla~~lGg~V~~~~~~~~G~~~  105 (195)
T PRK07649         81 GHQSIAQVFGGEVVRAERLMHGKTS  105 (195)
T ss_pred             HHHHHHHHcCCEEeeCCCcccCCeE
Confidence            9999999999999998877777765

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=99.96  E-value=5.1e-28  Score=179.70  Aligned_cols=105  Identities=45%  Similarity=0.755  Sum_probs=91.7

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl  105 (133)
                      +|++|||+|||++++.++|++.|+++.+++++..+.+++...++|+|||+|||++|.+.....++++++.+++|+||||+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~   80 (188)
T TIGR00566         1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCL   80 (188)
T ss_pred             CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECH
Confidence            48999999999999999999999999999976556777766679999999999999876666678887777899999999


Q ss_pred             hHHHHHHHhCCeeeeccCCcceeee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      |||+|+.++||+|.+.+...+|.++
T Consensus        81 G~Qll~~~~GG~v~~~~~~~~g~~~  105 (188)
T TIGR00566        81 GHQAMGQAFGGDVVRANTVMHGKTS  105 (188)
T ss_pred             HHHHHHHHcCCEEeeCCCccccceE
Confidence            9999999999999998876677443

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK05670 anthranilate synthase component II; Provisional

Probab=99.95  E-value=1.6e-27  Score=176.79  Aligned_cols=106  Identities=53%  Similarity=0.892  Sum_probs=91.1

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl  105 (133)
                      ||+|||++|+|++++.++|+++|+++++++++....+++...++||||++|||++|.+.....++++++..++|+||||+
T Consensus         1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl   80 (189)
T PRK05670          1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL   80 (189)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence            58999999999999999999999999999986444555554569999999999999877666677777777899999999


Q ss_pred             hHHHHHHHhCCeeeeccCCcceeeee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      |||+|+.++||+|.+.+..++|..+.
T Consensus        81 G~Qlla~alGg~v~~~~~~~~g~~~~  106 (189)
T PRK05670         81 GHQAIGEAFGGKVVRAKEIMHGKTSP  106 (189)
T ss_pred             HHHHHHHHhCCEEEecCCcccCceeE
Confidence            99999999999999988777776543

>CHL00101 trpG anthranilate synthase component 2

Probab=99.95  E-value=1.7e-27  Score=177.15  Aligned_cols=107  Identities=48%  Similarity=0.774  Sum_probs=91.5

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl  105 (133)
                      ||+||||+|+|++++.++|++.|.++.+++.+..+.+++...++||||++|||++|++.....++++.++.++|+||||+
T Consensus         1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl   80 (190)
T CHL00101          1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL   80 (190)
T ss_pred             CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence            48999999999999999999999999999876556666654579999999999999876655555655678899999999


Q ss_pred             hHHHHHHHhCCeeeeccCCcceeeeee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      |||+||.++||+|.+.+..++|.++.+
T Consensus        81 G~Qlla~~~Gg~V~~~~~~~~g~~~~~  107 (190)
T CHL00101         81 GHQSIGYLFGGKIIKAPKPMHGKTSKI  107 (190)
T ss_pred             hHHHHHHHhCCEEEECCCcccCceeeE
Confidence            999999999999999987777776543

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=99.95  E-value=3.8e-27  Score=175.49  Aligned_cols=105  Identities=44%  Similarity=0.775  Sum_probs=91.2

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl  105 (133)
                      ||++|||+|||++++.++|++.|+++++++++..+.+++...++|++|++|||++|++.....++++.++.++|+||||+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGICl   80 (193)
T PRK08857          1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL   80 (193)
T ss_pred             CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcH
Confidence            48999999999999999999999999999986445555554579999999999999977666677777778999999999


Q ss_pred             hHHHHHHHhCCeeeeccCCcceeee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      |||+||.++||+|.+.+..++|.+.
T Consensus        81 G~Qlia~a~Gg~v~~~~~~~~G~~~  105 (193)
T PRK08857         81 GHQAIAQVFGGQVVRARQVMHGKTS  105 (193)
T ss_pred             HHHHHHHHhCCEEEeCCCceeCceE
Confidence            9999999999999999877777643

>PLN02335 anthranilate synthase

Probab=99.94  E-value=1.8e-26  Score=175.67  Aligned_cols=103  Identities=84%  Similarity=1.371  Sum_probs=89.9

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 032797           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (133)
                      ..++.+|+|||++|+|++++.++|+++|+++++++++..+.+++...++|+|||+|||++|+|.+...+.++++..++|+
T Consensus        15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~Pi   94 (222)
T PLN02335         15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPL   94 (222)
T ss_pred             cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCE
Confidence            35677999999999999999999999999999999865566666555799999999999999877666677777778999


Q ss_pred             EEEechHHHHHHHhCCeeeeccC
Q 032797          101 FGVCMGLQCIGEAFGDCAFSAWC  123 (133)
Q Consensus       101 LGIClG~QlLa~a~GG~v~~~~~  123 (133)
                      ||||+|||+|+.++||+|.+.+.
T Consensus        95 LGIClG~QlLa~alGg~v~~~~~  117 (222)
T PLN02335         95 FGVCMGLQCIGEAFGGKIVRSPF  117 (222)
T ss_pred             EEecHHHHHHHHHhCCEEEeCCC
Confidence            99999999999999999998763

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=99.94  E-value=2e-26  Score=171.12  Aligned_cols=103  Identities=28%  Similarity=0.505  Sum_probs=86.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      |||+||||+|+|++++.++|++.|.++++++++..+.+++.  .+|+||++|||++|.+.....++|++++.++|+||||
T Consensus         2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIC   79 (190)
T PRK06895          2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVC   79 (190)
T ss_pred             cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEc
Confidence            79999999999999999999999999999987544445554  7999999999998765555567777777889999999


Q ss_pred             chHHHHHHHhCCeeeeccCCcceee
Q 032797          105 MGLQCIGEAFGDCAFSAWCHAWKKF  129 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~~~~~g~~  129 (133)
                      +|||+|+.++||+|.+.+...+|..
T Consensus        80 lG~Qlla~~~Gg~V~~~~~~~~g~~  104 (190)
T PRK06895         80 LGHQTLCEFFGGELYNLNNVRHGQQ  104 (190)
T ss_pred             HHHHHHHHHhCCeEeecCCCccCce
Confidence            9999999999999998765555543

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.94  E-value=5.1e-26  Score=171.70  Aligned_cols=103  Identities=34%  Similarity=0.601  Sum_probs=88.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      .||++||++|+|++++.+.|++.|+.+++++++ .+.+++...++|+|||+|||++|+|.....++++....++|+||||
T Consensus         2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIC   80 (208)
T PRK05637          2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGIC   80 (208)
T ss_pred             CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEc
Confidence            479999999999999999999999999999986 4567776568999999999999988766666776554579999999


Q ss_pred             chHHHHHHHhCCeeeeccCCcceee
Q 032797          105 MGLQCIGEAFGDCAFSAWCHAWKKF  129 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~~~~~g~~  129 (133)
                      +|||+|+.++||+|.+.. .++|..
T Consensus        81 lG~Qlla~alGG~V~~~~-~~~G~~  104 (208)
T PRK05637         81 LGFQALLEHHGGKVEPCG-PVHGTT  104 (208)
T ss_pred             HHHHHHHHHcCCeeccCC-cccceE
Confidence            999999999999999765 355544

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.92  E-value=1.2e-24  Score=164.84  Aligned_cols=108  Identities=44%  Similarity=0.721  Sum_probs=89.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF  101 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvL  101 (133)
                      |||+++|++++|+.++.++|++.|+.+++++++....++..  ...+|||||+|||++|.+.....++++++ ++++|+|
T Consensus         1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL   80 (214)
T PRK07765          1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL   80 (214)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence            68999999999999999999999999999988632222222  13799999999999988776667788885 6789999


Q ss_pred             EEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797          102 GVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus       102 GIClG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      |||+|||+|+.++||+|.+.+..++|.++.|
T Consensus        81 GIC~G~Qlla~a~GG~v~~~~~~~~g~~~~v  111 (214)
T PRK07765         81 GVCLGHQAIGVAFGATVDRAPELLHGKTSSV  111 (214)
T ss_pred             EEccCHHHHHHHhCCEEeeCCCCccCceeEE
Confidence            9999999999999999999887666765543

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.92  E-value=2e-24  Score=181.81  Aligned_cols=108  Identities=33%  Similarity=0.556  Sum_probs=91.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~---~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvL  101 (133)
                      +||++|||+|||++++++.|++.|.++.+++.+..   ..+++...++|+|||||||++|+|.+...++++.+..++|+|
T Consensus         2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPIL   81 (531)
T PRK09522          2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII   81 (531)
T ss_pred             CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEE
Confidence            58999999999999999999999999999886421   245554457899999999999988765555555566689999


Q ss_pred             EEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797          102 GVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus       102 GIClG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      |||+|||+|+.++||+|.+.++.+||+++.+
T Consensus        82 GIClG~QlLa~a~GG~V~~~~~~~~G~~~~i  112 (531)
T PRK09522         82 GICLGHQAIVEAYGGYVGQAGEILHGKASSI  112 (531)
T ss_pred             EEcHHHHHHHHhcCCEEEeCCceeeeeEEEE
Confidence            9999999999999999999988888887643

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.91  E-value=5.5e-24  Score=156.95  Aligned_cols=104  Identities=54%  Similarity=0.860  Sum_probs=84.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEech
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG  106 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIClG  106 (133)
                      |+|+|++++|++++.++|++.|+++++++++..........++||+|++|||+++.+......+++.+.+++|+||||+|
T Consensus         1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G   80 (184)
T cd01743           1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLG   80 (184)
T ss_pred             CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHh
Confidence            68999999999999999999999999999864322211224799999999999988776544444445678999999999


Q ss_pred             HHHHHHHhCCeeeeccCCcceeee
Q 032797          107 LQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus       107 ~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      ||+|+.++||+|.+.+..++|..+
T Consensus        81 ~Qlla~~~Gg~v~~~~~~~~g~~~  104 (184)
T cd01743          81 HQAIAEAFGGKVVRAPEPMHGKTS  104 (184)
T ss_pred             HHHHHHHhCCEEEeCCCCCcCcee
Confidence            999999999999998876666544

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.91  E-value=1.7e-23  Score=157.00  Aligned_cols=106  Identities=23%  Similarity=0.319  Sum_probs=89.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTV   98 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~   98 (133)
                      .+|+|+|++.+|++.+.+++++.| ...++++++ .+.+++...++||+||+|||.++++++    ...++|++. ..++
T Consensus         2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~-~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~   80 (198)
T COG0518           2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYT-GDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGK   80 (198)
T ss_pred             cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCC-CCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCC
Confidence            478999999999999999999999 777777775 455666656789999999999998766    346778775 5678


Q ss_pred             CEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797           99 PLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus        99 PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      |+||||+|||+||.++||+|.+++..|+|++.+
T Consensus        81 pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~~v  113 (198)
T COG0518          81 PVLGICLGHQLLAKALGGKVERGPKREIGWTPV  113 (198)
T ss_pred             CEEEEChhHHHHHHHhCCEEeccCCCccceEEE
Confidence            899999999999999999999998778877654

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.91  E-value=1.5e-23  Score=184.10  Aligned_cols=107  Identities=39%  Similarity=0.620  Sum_probs=91.5

Q ss_pred             CeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCCHHHHcc-----CCCCEEEECCCCCCcCCc---hHHHHHHHHhC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDS---GISLQTVLELG   95 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~~~~~l~~-----~~~DgvIl~GG~~~~~d~---~~~~~~i~~~~   95 (133)
                      |||++|||||||++++++.|++. |.++.++++++.+.+++..     ..+|+|||+||||+|...   +...++|++. 
T Consensus        82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-  160 (918)
T PLN02889         82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC-  160 (918)
T ss_pred             ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence            68999999999999999999997 9999999988667766532     379999999999999644   3345666654 


Q ss_pred             CCCCEEEEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797           96 PTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus        96 ~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      .++||||||+|||+|+.++||+|.+++.+.||+++-|
T Consensus       161 ~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~HG~~s~I  197 (918)
T PLN02889        161 RDIPILGVCLGHQALGYVHGARIVHAPEPVHGRLSEI  197 (918)
T ss_pred             CCCcEEEEcHHHHHHHHhcCceEEeCCCceeeeeeeE
Confidence            4699999999999999999999999999999998754

>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]

Probab=99.90  E-value=2.1e-23  Score=151.53  Aligned_cols=114  Identities=78%  Similarity=1.237  Sum_probs=103.7

Q ss_pred             ccCCCCCeEEEEECCCCchHHHHHHH-HhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCC
Q 032797           19 KSKNNKNPIIVIDNYDSFTYNLCQYM-GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPT   97 (133)
Q Consensus        19 ~~~~~~~~i~vid~~~~~~~~i~~~l-~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~   97 (133)
                      -+...+..|++|||||+|++++.++| -+.|+.+.++++|+.+.+++...++++++|++|||+|.|.+-..+.|+++...
T Consensus        13 ~~~~~n~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~   92 (223)
T KOG0026|consen   13 NSSKQNGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPL   92 (223)
T ss_pred             ccccccCCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCC
Confidence            33455678999999999999999999 67899999999999999999888999999999999999888888999999889


Q ss_pred             CCEEEEechHHHHHHHhCCeeeecc-CCcceeeeee
Q 032797           98 VPLFGVCMGLQCIGEAFGDCAFSAW-CHAWKKFSCV  132 (133)
Q Consensus        98 ~PvLGIClG~QlLa~a~GG~v~~~~-~~~~g~~~~~  132 (133)
                      +|+||||.|.|.|.++|||+|.+++ +.-+|++|-|
T Consensus        93 iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i  128 (223)
T KOG0026|consen   93 VPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMV  128 (223)
T ss_pred             CceeeeehhhhhhhhhhCcEEeccCcceeecccccc
Confidence            9999999999999999999999998 8899998754

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.90  E-value=1.2e-23  Score=177.32  Aligned_cols=107  Identities=50%  Similarity=0.850  Sum_probs=91.3

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      ||++|||+|||++++.+.|++.|.+ +.+++++..+.+++...++|+||++|||++|++.+...++++.+..++|+||||
T Consensus         1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIC   80 (534)
T PRK14607          1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVC   80 (534)
T ss_pred             CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEc
Confidence            5899999999999999999999986 666655545677776567999999999999998776677777777789999999


Q ss_pred             chHHHHHHHhCCeeeeccCCcceeeeee
Q 032797          105 MGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      +|||+|+.++||+|.+.+..++|.++.|
T Consensus        81 lG~QlLa~a~Gg~V~~~~~~~~G~~~~v  108 (534)
T PRK14607         81 LGHQAIGYAFGGKIVHAKRILHGKTSPI  108 (534)
T ss_pred             HHHHHHHHHcCCeEecCCccccCCceeE
Confidence            9999999999999999987777775543

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.90  E-value=6.6e-23  Score=151.76  Aligned_cols=103  Identities=26%  Similarity=0.439  Sum_probs=85.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEec
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM  105 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGICl  105 (133)
                      |+|||++++|++++.++|++.|+++++++++ .+.+++...++|||||+||++++++... .++++. ++.++|+||||+
T Consensus         1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~PilGIC~   78 (188)
T TIGR00888         1 ILVLDFGSQYTQLIARRLRELGVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVPVLGICY   78 (188)
T ss_pred             CEEEECCchHHHHHHHHHHHcCCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCCEEEECH
Confidence            5899999999999999999999999999986 3566665445779999999998887543 356666 478899999999


Q ss_pred             hHHHHHHHhCCeeeeccCCcceeeee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      |||+|+.++||+|.+.+..+.|+..+
T Consensus        79 G~Qll~~~lgg~v~~~~~~~~g~~~v  104 (188)
T TIGR00888        79 GMQLMAKQLGGEVGRAEKREYGKAEL  104 (188)
T ss_pred             HHHHHHHhcCceEecCCCccceeEEE
Confidence            99999999999999887666666543

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=99.89  E-value=2e-23  Score=154.08  Aligned_cols=101  Identities=34%  Similarity=0.508  Sum_probs=84.0

Q ss_pred             EEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH--ccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797           28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC  104 (133)
Q Consensus        28 ~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l--~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC  104 (133)
                      +|||+|++|++++.+++++.|.++++++.+. +.++.  ...++|++||+||+++++|.....++++++ +.++|+||||
T Consensus         1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC   79 (192)
T PF00117_consen    1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC   79 (192)
T ss_dssp             EEEESSHTTHHHHHHHHHHTTEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred             CEEeCCHHHHHHHHHHHHHCCCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence            6899999999999999999999999999863 32222  235899999999999999966666777775 6799999999


Q ss_pred             chHHHHHHHhCCeeeecc-CCcceee
Q 032797          105 MGLQCIGEAFGDCAFSAW-CHAWKKF  129 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~-~~~~g~~  129 (133)
                      +|||+|+.++||+|.+.+ ....|.+
T Consensus        80 ~G~Q~la~~~G~~v~~~~~~~~~g~~  105 (192)
T PF00117_consen   80 LGHQILAHALGGKVVPSPEKPHHGGN  105 (192)
T ss_dssp             HHHHHHHHHTTHEEEEEESEEEEEEE
T ss_pred             ehhhhhHHhcCCcccccccccccccc
Confidence            999999999999999887 4444443

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.89  E-value=1.7e-22  Score=148.22  Aligned_cols=103  Identities=28%  Similarity=0.472  Sum_probs=82.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEec
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM  105 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGICl  105 (133)
                      |++||++++|+.++.++|++.|+++++++++. +.++....++|+||++||++++++.... .+.+. .+.++|+||||+
T Consensus         1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dgvIl~Gg~~~~~~~~~~-~~~~~~~~~~~PilGIC~   78 (181)
T cd01742           1 ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDAP-RVDPEIFELGVPVLGICY   78 (181)
T ss_pred             CEEEECCCchHHHHHHHHHhcCceEEEecCCC-ChhhhcccCCCEEEECCCcccccccccc-hhhHHHHhcCCCEEEEcH
Confidence            57999999999999999999999999998763 3333333489999999999988765321 22233 245899999999


Q ss_pred             hHHHHHHHhCCeeeeccCCcceeeee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      |||+|+.++||+|.+.+.+++|+.++
T Consensus        79 G~Qll~~~~gg~v~~~~~~~~G~~~v  104 (181)
T cd01742          79 GMQLIAKALGGKVERGDKREYGKAEI  104 (181)
T ss_pred             HHHHHHHhcCCeEEeCCCCcceEEEE
Confidence            99999999999999987777776654

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK00758 GMP synthase subunit A; Validated

Probab=99.88  E-value=3e-22  Score=147.82  Aligned_cols=100  Identities=26%  Similarity=0.419  Sum_probs=80.8

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCC-CEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNP-RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~-DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      ||+|||++++|++++.++|++.|.++.+++++ .+.+++.  ++ ||+|++||| +..+.....++++  +.++|+||||
T Consensus         1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~--~~~~PilGIC   74 (184)
T PRK00758          1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLK--ELDVPILGIC   74 (184)
T ss_pred             CEEEEECCCchHHHHHHHHHHcCCcEEEEECC-CCHHHHh--hcCCEEEECCCC-ChhhccccHHHHH--hCCCCEEEEe
Confidence            48999999999999999999999999998875 3556664  56 999999998 3322222334454  4579999999


Q ss_pred             chHHHHHHHhCCeeeeccCCcceeeee
Q 032797          105 MGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      +|||+|+.++||+|.+.+..++|.+.+
T Consensus        75 ~G~Q~L~~a~Gg~v~~~~~~~~g~~~i  101 (184)
T PRK00758         75 LGHQLIAKAFGGEVGRGEYGEYALVEV  101 (184)
T ss_pred             HHHHHHHHhcCcEEecCCCceeeeEEE
Confidence            999999999999999988778887665

>PLN02347 GMP synthetase

Probab=99.88  E-value=5.1e-22  Score=167.36  Aligned_cols=106  Identities=20%  Similarity=0.327  Sum_probs=88.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH--HH-HHHHHh-CCCCCE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SL-QTVLEL-GPTVPL  100 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~--~~-~~i~~~-~~~~Pv  100 (133)
                      .+|+|||++++|++++.+++++.|+.++++|++ .+.+++...++|||||||||+++++.+.  .. .+++.+ +.++|+
T Consensus        11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPI   89 (536)
T PLN02347         11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPV   89 (536)
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcE
Confidence            479999999999999999999999999999986 5677776557999999999999886532  22 233333 568999


Q ss_pred             EEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797          101 FGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       101 LGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      ||||+|||+|+.++||+|.+.+..++|+.++
T Consensus        90 LGIClG~QlLa~alGG~V~~~~~~e~G~~~v  120 (536)
T PLN02347         90 LGICYGMQLIVQKLGGEVKPGEKQEYGRMEI  120 (536)
T ss_pred             EEECHHHHHHHHHcCCEEEecCCcccceEEE
Confidence            9999999999999999999987777777764

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=99.88  E-value=5.4e-22  Score=162.19  Aligned_cols=104  Identities=30%  Similarity=0.467  Sum_probs=89.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      .+|+++|+  +.++++.++|++.|++++++|++ .+.+++...++|||||||||++|.+.....+.++++..++|+||||
T Consensus       241 ~~IvviD~--G~K~nIlr~L~~~G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGIC  317 (415)
T PLN02771        241 YHVIAYDF--GIKHNILRRLASYGCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGIC  317 (415)
T ss_pred             CEEEEECC--ChHHHHHHHHHHcCCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEc
Confidence            68999999  66899999999999999999986 4666766568999999999999987776677777754579999999


Q ss_pred             chHHHHHHHhCCeeeeccCCcceeeee
Q 032797          105 MGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      +|||+|+.|+||++.+++...+|..+-
T Consensus       318 LGhQlLa~AlGGkv~K~~~Gh~G~n~p  344 (415)
T PLN02771        318 MGHQLLGQALGGKTFKMKFGHHGGNHP  344 (415)
T ss_pred             HHHHHHHHhcCCeEEECCCCcccceEE
Confidence            999999999999999988766766553

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.88  E-value=4.6e-22  Score=146.37  Aligned_cols=99  Identities=27%  Similarity=0.490  Sum_probs=81.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEec
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM  105 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGICl  105 (133)
                      |+|+|+++.|  +++++|++.|+.+++++++ .+.+++...++|+||++|||+++.+.....++++++ ++++|+||||+
T Consensus         1 i~i~d~g~~~--~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~   77 (178)
T cd01744           1 VVVIDFGVKH--NILRELLKRGCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICL   77 (178)
T ss_pred             CEEEecCcHH--HHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECH
Confidence            5799998775  6899999999999999986 345555445799999999999888766667788875 77899999999


Q ss_pred             hHHHHHHHhCCeeeeccCCccee
Q 032797          106 GLQCIGEAFGDCAFSAWCHAWKK  128 (133)
Q Consensus       106 G~QlLa~a~GG~v~~~~~~~~g~  128 (133)
                      |||+|+.++||+|.+.+...+|.
T Consensus        78 G~Q~l~~~~Gg~v~~~~~~~~g~  100 (178)
T cd01744          78 GHQLLALALGAKTYKMKFGHRGS  100 (178)
T ss_pred             HHHHHHHHcCCceecCCCCCCCC
Confidence            99999999999999865444443

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.88  E-value=4.1e-22  Score=158.82  Aligned_cols=106  Identities=27%  Similarity=0.501  Sum_probs=93.1

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCE
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL  100 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~Pv  100 (133)
                      ..+.+|+++|+  +.++++.+.|.++|++++++|++ .+.+++...++|||+||.|||+|......++.|+++ +..+|+
T Consensus       177 ~~~~~Vv~iD~--GvK~nIlr~L~~rg~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPi  253 (368)
T COG0505         177 EPGKHVVVIDF--GVKRNILRELVKRGCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPI  253 (368)
T ss_pred             CCCcEEEEEEc--CccHHHHHHHHHCCCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCe
Confidence            34679999999  78899999999999999999986 678888777999999999999998888888899986 667799


Q ss_pred             EEEechHHHHHHHhCCeeeeccCCcceeee
Q 032797          101 FGVCMGLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus       101 LGIClG~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      ||||+|||+|+.|+|++.+|++...+|.-+
T Consensus       254 fGICLGHQllalA~Ga~T~KmkFGHrG~Nh  283 (368)
T COG0505         254 FGICLGHQLLALALGAKTYKMKFGHRGANH  283 (368)
T ss_pred             EEEcHHHHHHHHhcCCceeecccCCCCCCc
Confidence            999999999999999999999765555433

>PRK13566 anthranilate synthase; Provisional

Probab=99.88  E-value=6.2e-22  Score=171.45  Aligned_cols=110  Identities=34%  Similarity=0.498  Sum_probs=91.5

Q ss_pred             ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCC
Q 032797           19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPT   97 (133)
Q Consensus        19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~   97 (133)
                      ..+..+++|+||||+++|.+++.++|++.|+++++++++. +.+.+...++|+|||+|||++|.|.. ..++++++ +++
T Consensus       521 ~~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~-~~~~~~~~~~DgVVLsgGpgsp~d~~-~~~lI~~a~~~~  598 (720)
T PRK13566        521 AAVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF-AEEMLDRVNPDLVVLSPGPGRPSDFD-CKATIDAALARN  598 (720)
T ss_pred             CCCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC-ChhHhhhcCCCEEEECCCCCChhhCC-cHHHHHHHHHCC
Confidence            3567789999999999999999999999999999999863 33344445799999999999997654 35677774 778


Q ss_pred             CCEEEEechHHHHHHHhCCeeeeccCCcceeee
Q 032797           98 VPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus        98 ~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      +|+||||+|||+|+.++||+|.+.+.+++|+.+
T Consensus       599 iPILGIClG~QlLa~alGG~V~~~~~~~~G~~~  631 (720)
T PRK13566        599 LPIFGVCLGLQAIVEAFGGELGQLAYPMHGKPS  631 (720)
T ss_pred             CcEEEEehhHHHHHHHcCCEEEECCCCccCCce
Confidence            999999999999999999999988766666533

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.88  E-value=7.3e-22  Score=170.89  Aligned_cols=107  Identities=31%  Similarity=0.528  Sum_probs=88.0

Q ss_pred             cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCC
Q 032797           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTV   98 (133)
Q Consensus        20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~   98 (133)
                      .+..+++|+|||++++|++++.++|++.|+++.+++++. ..+.+...++|+|||+|||++|.+.+. .++|++ ++.++
T Consensus       512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~~i  589 (717)
T TIGR01815       512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPADFDV-AGTIDAALARGL  589 (717)
T ss_pred             CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-ChhhhhhcCCCEEEEcCCCCCchhccc-HHHHHHHHHCCC
Confidence            446778999999999999999999999999999988652 222223347999999999999987643 456666 47889


Q ss_pred             CEEEEechHHHHHHHhCCeeeeccCCccee
Q 032797           99 PLFGVCMGLQCIGEAFGDCAFSAWCHAWKK  128 (133)
Q Consensus        99 PvLGIClG~QlLa~a~GG~v~~~~~~~~g~  128 (133)
                      |+||||+|||+|+.++||+|.+.+.+++|+
T Consensus       590 PvLGICLG~QlLa~a~GG~V~~~~~p~~G~  619 (717)
T TIGR01815       590 PVFGVCLGLQGMVEAFGGALDVLPEPVHGK  619 (717)
T ss_pred             CEEEECHHHHHHhhhhCCEEEECCCCeeCc
Confidence            999999999999999999999987666664

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=99.87  E-value=1.1e-21  Score=159.33  Aligned_cols=101  Identities=29%  Similarity=0.496  Sum_probs=85.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG  102 (133)
                      ++||++||+  ++++++.++|++.|+++.++|++ .+.+++...++|||||+|||++|.+...+.+.++++ +.++|+||
T Consensus       192 ~~~I~viD~--g~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilG  268 (382)
T CHL00197        192 QLKIIVIDF--GVKYNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFG  268 (382)
T ss_pred             CCEEEEEEC--CcHHHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEE
Confidence            579999999  78889999999999999999886 466666656899999999999998776666777764 56899999


Q ss_pred             EechHHHHHHHhCCeeeeccCCcce
Q 032797          103 VCMGLQCIGEAFGDCAFSAWCHAWK  127 (133)
Q Consensus       103 IClG~QlLa~a~GG~v~~~~~~~~g  127 (133)
                      ||+|||+|+.++||++.+.+....|
T Consensus       269 IClGhQlLa~a~Gg~v~k~~~Gh~g  293 (382)
T CHL00197        269 ICMGHQILSLALEAKTFKLKFGHRG  293 (382)
T ss_pred             EcHHHHHHHHHhCCEEeccCCCCCC
Confidence            9999999999999999987643333

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.87  E-value=1.7e-21  Score=157.07  Aligned_cols=104  Identities=25%  Similarity=0.436  Sum_probs=87.3

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF  101 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvL  101 (133)
                      .+.+|+++|+  ++++++.++|++.|+.++++|++ .+.+++...++|||||+|||++|.+.....++++++ ++ +|+|
T Consensus       166 ~~~~V~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~Pvl  241 (354)
T PRK12838        166 GGKHVALIDF--GYKKSILRSLSKRGCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPIL  241 (354)
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEE
Confidence            3579999999  68999999999999999999986 456666555899999999999998776667778775 44 9999


Q ss_pred             EEechHHHHHHHhCCeeeeccCCcceeee
Q 032797          102 GVCMGLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus       102 GIClG~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      |||+|||+|+.++||++.+.+...+|..+
T Consensus       242 GIClG~QlLa~a~Gg~v~kl~~gh~G~~h  270 (354)
T PRK12838        242 GICLGHQLIALALGADTEKLPFGHRGANH  270 (354)
T ss_pred             EECHHHHHHHHHhCCEEecCCCCccCCce
Confidence            99999999999999999988755555544

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.87  E-value=1.5e-21  Score=157.70  Aligned_cols=104  Identities=28%  Similarity=0.482  Sum_probs=87.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG  102 (133)
                      +.+|++||+  +..+++.++|++.|+.+.++|++ .+.+++...++|||||+|||++|.+.....++++++ +.++|+||
T Consensus       177 ~~~I~viD~--G~k~nivr~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilG  253 (360)
T PRK12564        177 KYKVVAIDF--GVKRNILRELAERGCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFG  253 (360)
T ss_pred             CCEEEEEeC--CcHHHHHHHHHHCCCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence            579999999  57789999999999999999986 456666545799999999999997766666778875 67899999


Q ss_pred             EechHHHHHHHhCCeeeeccCCcceeee
Q 032797          103 VCMGLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus       103 IClG~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      ||+|||+|+.++||++.+.+...+|..+
T Consensus       254 IClG~QlLa~a~Gg~v~kl~~gh~G~~~  281 (360)
T PRK12564        254 ICLGHQLLALALGAKTYKMKFGHRGANH  281 (360)
T ss_pred             ECHHHHHHHHHhCCcEeccCCCccCCce
Confidence            9999999999999999988754555433

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=99.86  E-value=2.5e-21  Score=156.38  Aligned_cols=102  Identities=28%  Similarity=0.511  Sum_probs=85.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      .+|+++|+  +..+++.++|++.|+.++++|++ .+.+++....+|||||+|||++|.+.....++++++-.++|+||||
T Consensus       174 ~~i~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIC  250 (358)
T TIGR01368       174 KRVVVIDF--GVKQNILRRLVKRGCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGIC  250 (358)
T ss_pred             cEEEEEeC--CcHHHHHHHHHHCCCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEEC
Confidence            58999999  67789999999999999999986 4566665446799999999999977666677787752389999999


Q ss_pred             chHHHHHHHhCCeeeeccCCcceee
Q 032797          105 MGLQCIGEAFGDCAFSAWCHAWKKF  129 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~~~~~g~~  129 (133)
                      +|||+|+.++||++.+.+...+|..
T Consensus       251 lG~QlLa~a~Gg~v~kl~~gh~G~n  275 (358)
T TIGR01368       251 LGHQLLALAFGAKTYKMKFGHRGGN  275 (358)
T ss_pred             HHHHHHHHHhCCceeccCcCcCCCc
Confidence            9999999999999998765455543

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.86  E-value=3.3e-21  Score=161.84  Aligned_cols=106  Identities=25%  Similarity=0.468  Sum_probs=87.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG  102 (133)
                      ..+|+|||++++|++.+.++|++.|+.+++++++ .+.+++...++|||||+|||.++++.... ...+. ++.++|+||
T Consensus         3 ~~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p-~~~~~i~~~~~PvLG   80 (511)
T PRK00074          3 HDKILILDFGSQYTQLIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAP-RADPEIFELGVPVLG   80 (511)
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHCCCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCc-cccHHHHhCCCCEEE
Confidence            3579999999999999999999999999999876 45677765567999999999988865431 11222 356899999


Q ss_pred             EechHHHHHHHhCCeeeeccCCcceeeee
Q 032797          103 VCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       103 IClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      ||+|||+|+.++||+|.+.+..++|.+.+
T Consensus        81 IC~G~QlLa~~lGG~V~~~~~~e~G~~~i  109 (511)
T PRK00074         81 ICYGMQLMAHQLGGKVERAGKREYGRAEL  109 (511)
T ss_pred             ECHHHHHHHHHhCCeEEecCCcccceEEE
Confidence            99999999999999999988777777665

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.86  E-value=6e-21  Score=146.74  Aligned_cols=99  Identities=21%  Similarity=0.375  Sum_probs=79.8

Q ss_pred             CCCCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCCCcCCchHH----HHHHHH-
Q 032797           22 NNKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGIS----LQTVLE-   93 (133)
Q Consensus        22 ~~~~~i~vid~~~-~~~~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~~~~d~~~~----~~~i~~-   93 (133)
                      ..+++|+||++.+ ++...+.++|++.|.+++++++...  .++++  .+||++||+|||++++|...+    .++|++ 
T Consensus         5 ~~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l--~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~   82 (239)
T PRK06490          5 RDKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTL--EDHAGAVIFGGPMSANDPDDFIRREIDWISVP   82 (239)
T ss_pred             CCCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcc--cccCEEEEECCCCCCCCCchHHHHHHHHHHHH
Confidence            3568999997766 7788999999999999998865311  12233  379999999999999876643    466776 


Q ss_pred             hCCCCCEEEEechHHHHHHHhCCeeeecc
Q 032797           94 LGPTVPLFGVCMGLQCIGEAFGDCAFSAW  122 (133)
Q Consensus        94 ~~~~~PvLGIClG~QlLa~a~GG~v~~~~  122 (133)
                      ++.++|+||||+|||+|+.++||+|.+.+
T Consensus        83 ~~~~~PvLGIC~G~Qlla~alGG~V~~~~  111 (239)
T PRK06490         83 LKENKPFLGICLGAQMLARHLGARVAPHP  111 (239)
T ss_pred             HHCCCCEEEECHhHHHHHHHcCCEeecCC
Confidence            47889999999999999999999999875

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.85  E-value=7.7e-21  Score=165.28  Aligned_cols=110  Identities=25%  Similarity=0.433  Sum_probs=83.5

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhC-C--CeEEEEeCCCCCHHHHc-cCCCCEEEECCCCCCcCCchH--HHHHHHHh-
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGEL-G--YHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSGI--SLQTVLEL-   94 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~-G--~~~~v~~~~~~~~~~l~-~~~~DgvIl~GG~~~~~d~~~--~~~~i~~~-   94 (133)
                      ...+||++|||+|||++++++.|++. |  +++++++++....+.+. ...+|+|||+||||+|.+...  +...+.+. 
T Consensus         3 ~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~   82 (742)
T TIGR01823         3 QQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWELA   82 (742)
T ss_pred             CCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHhc
Confidence            35679999999999999999999985 3  56788887643322222 137999999999999975443  22222222 


Q ss_pred             -CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797           95 -GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus        95 -~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                       ..++||||||+|||+|+.++||+|.+.+..++|.++.
T Consensus        83 ~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~hG~~~~  120 (742)
T TIGR01823        83 NLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYE  120 (742)
T ss_pred             ccCCCcEEEEchhhHHHHhhcCCEEEECCCCCcCeEEE
Confidence             2469999999999999999999999998777877553

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.84  E-value=3.2e-20  Score=142.29  Aligned_cols=108  Identities=18%  Similarity=0.231  Sum_probs=82.1

Q ss_pred             CCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHHh-C
Q 032797           24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-G   95 (133)
Q Consensus        24 ~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~   95 (133)
                      .++|+||+|-... ...+.++|++.|.++++++.+..........++|++|++|||.++++..      .+.++|+++ +
T Consensus         2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~   81 (234)
T PRK07053          2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLA   81 (234)
T ss_pred             CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHH
Confidence            5689999886543 4679999999999999987642211111123799999999999887653      245777774 7


Q ss_pred             CCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797           96 PTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus        96 ~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      .++|+||||+|||+|+.++||+|.+.+..+.|...+
T Consensus        82 ~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~i  117 (234)
T PRK07053         82 AGLPTLGICLGAQLIARALGARVYPGGQKEIGWAPL  117 (234)
T ss_pred             CCCCEEEECccHHHHHHHcCCcEecCCCCeEeEEEE
Confidence            789999999999999999999999876556665543

>PRK05665 amidotransferase; Provisional

Probab=99.79  E-value=1.2e-18  Score=134.03  Aligned_cols=98  Identities=17%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             CCeEEEEECCC----------CchHHHHHHHHhCCC--eEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCchHH---
Q 032797           24 KNPIIVIDNYD----------SFTYNLCQYMGELGY--HFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGIS---   87 (133)
Q Consensus        24 ~~~i~vid~~~----------~~~~~i~~~l~~~G~--~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~~~---   87 (133)
                      .|||+|+..+.          +|...+.+.|...+.  ++.++...... +.+  ..+|||+||+||+.++++...+   
T Consensus         2 ~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~--~~~~dgiiitGs~~~v~~~~pwi~~   79 (240)
T PRK05665          2 SLRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPAD--DEKFDAYLVTGSKADSFGTDPWIQT   79 (240)
T ss_pred             ceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCC--cccCCEEEECCCCCCccccchHHHH
Confidence            45788885543          344446666776664  34444432111 112  2379999999999999876543   


Q ss_pred             -HHHHHHh-CCCCCEEEEechHHHHHHHhCCeeeeccC
Q 032797           88 -LQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWC  123 (133)
Q Consensus        88 -~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~  123 (133)
                       .++|+++ ++++|+||||+|||+||.|+||+|.+.+.
T Consensus        80 l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~  117 (240)
T PRK05665         80 LKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQ  117 (240)
T ss_pred             HHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCC
Confidence             4667774 77899999999999999999999998763

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.79  E-value=6.3e-19  Score=135.30  Aligned_cols=97  Identities=18%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             CCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCchH----HHHHHHHh-CCCCCEEEEech
Q 032797           33 YDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLEL-GPTVPLFGVCMG  106 (133)
Q Consensus        33 ~~~~~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~~----~~~~i~~~-~~~~PvLGIClG  106 (133)
                      ++.|...+.+.+...|.++.+++..... .+++  .+|||+||+|||.++++...    +.++|+++ +.++|+||||+|
T Consensus        20 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G   97 (237)
T PRK09065         20 YGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAP--DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYG   97 (237)
T ss_pred             cCCHHHHHHHHhccCCceEEEEeccCCCCCCCh--hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChh
Confidence            4556666777777789998887764321 2223  37999999999998887543    35677774 678999999999


Q ss_pred             HHHHHHHhCCeeeeccC-Ccceeeee
Q 032797          107 LQCIGEAFGDCAFSAWC-HAWKKFSC  131 (133)
Q Consensus       107 ~QlLa~a~GG~v~~~~~-~~~g~~~~  131 (133)
                      ||+|+.++||+|.+.+. .+.|...+
T Consensus        98 ~Qlla~alGg~V~~~~~g~e~G~~~v  123 (237)
T PRK09065         98 HQLLAHALGGEVGYNPAGRESGTVTV  123 (237)
T ss_pred             HHHHHHHcCCccccCCCCCccceEEE
Confidence            99999999999998753 45555544

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.78  E-value=2e-18  Score=132.37  Aligned_cols=105  Identities=19%  Similarity=0.202  Sum_probs=77.3

Q ss_pred             CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCCCcCCc---------hHHHHHHH
Q 032797           25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDS---------GISLQTVL   92 (133)
Q Consensus        25 ~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~~~~d~---------~~~~~~i~   92 (133)
                      |||+||.+..-. ...+..++++.|+++.++.....  +.++  ..+||++|++|||+++.+.         ....++|+
T Consensus         1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g--~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~   78 (235)
T PRK08250          1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG--EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLIN   78 (235)
T ss_pred             CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC--CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHH
Confidence            688999764333 34577888999999988765321  1222  2479999999999986531         12356777


Q ss_pred             Hh-CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797           93 EL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus        93 ~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      ++ +.++|+||||+|+|+|+.++||+|.+.+..+.|+..+
T Consensus        79 ~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~v  118 (235)
T PRK08250         79 QAIKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGYFPI  118 (235)
T ss_pred             HHHHcCCCEEEEChhHHHHHHHhCceeccCCCCceeEEEE
Confidence            74 7899999999999999999999999887555665543

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.77  E-value=3e-18  Score=131.99  Aligned_cols=105  Identities=15%  Similarity=0.275  Sum_probs=71.0

Q ss_pred             eEEEEECCCCch---HHHHHHHHhCCCe---EEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc----hHH----H---
Q 032797           26 PIIVIDNYDSFT---YNLCQYMGELGYH---FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GIS----L---   88 (133)
Q Consensus        26 ~i~vid~~~~~~---~~i~~~l~~~G~~---~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~----~~~----~---   88 (133)
                      +|+|+++.....   ..+.+++++.|..   +.+++.+..........+|||+||+||+++++|.    ..+    .   
T Consensus         3 ~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i   82 (242)
T PRK07567          3 PFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAEL   82 (242)
T ss_pred             cEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHH
Confidence            388888766533   4577888887765   5555543221111112379999999999999875    222    1   


Q ss_pred             -HHHHHh-CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeee
Q 032797           89 -QTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus        89 -~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                       ++++.. +.++|+||||+|||+|+.++||+|.+....+.|...
T Consensus        83 ~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~G~~~  126 (242)
T PRK07567         83 SGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPVGAVT  126 (242)
T ss_pred             HHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcCccEE
Confidence             233332 688999999999999999999999985444444433

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]

Probab=99.73  E-value=5.4e-18  Score=138.49  Aligned_cols=108  Identities=20%  Similarity=0.331  Sum_probs=90.5

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch--HHHHHHHHhCCCC
Q 032797           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTV   98 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~--~~~~~i~~~~~~~   98 (133)
                      ....-+|+|+|++.+|.+.+.+.+|+..+..+++|.+ .+...+....|.||||||||.++++.+  .+...+.++  ++
T Consensus        13 ~~~~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~--~v   89 (552)
T KOG1622|consen   13 SSYFDTILILDFGAQYGKVIDRRVRELNVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFEL--GV   89 (552)
T ss_pred             cccCceEEEEeccchhhHHHHHHHHHHhhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhcc--CC
Confidence            3455689999999999999999999999999999875 455667667899999999999998554  334455544  49


Q ss_pred             CEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797           99 PLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus        99 PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      |+||||+|||+|+..+||+|.+....++|...+
T Consensus        90 pvLGICYGmQ~i~~~~Gg~V~~~~~RE~G~~eI  122 (552)
T KOG1622|consen   90 PVLGICYGMQLINKLNGGTVVKGMVREDGEDEI  122 (552)
T ss_pred             cceeehhHHHHHHHHhCCccccccccCCCCceE
Confidence            999999999999999999999998888887665

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.73  E-value=2.1e-17  Score=123.56  Aligned_cols=81  Identities=23%  Similarity=0.404  Sum_probs=64.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHHhCCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTV   98 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~~~~~~   98 (133)
                      |+|+|||+++++.+++.++|++.|+++++++.    .+++.  ++|+||+ +|+|++.+...      +.+.++  +.++
T Consensus         1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~--~~~~   71 (196)
T PRK13170          1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIK--ACTQ   71 (196)
T ss_pred             CeEEEEeCCCchHHHHHHHHHHCCCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHH--HcCC
Confidence            68999999999999999999999999988864    24554  6899999 66677665432      223333  3469


Q ss_pred             CEEEEechHHHHHHHh
Q 032797           99 PLFGVCMGLQCIGEAF  114 (133)
Q Consensus        99 PvLGIClG~QlLa~a~  114 (133)
                      |+||||+|||+|+.++
T Consensus        72 PilGIClG~Qll~~~~   87 (196)
T PRK13170         72 PVLGICLGMQLLGERS   87 (196)
T ss_pred             CEEEECHHHHHHhhhc
Confidence            9999999999999998

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.73  E-value=5e-17  Score=119.90  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=75.7

Q ss_pred             eEEEEECCCCc-hHHHHHHHHhCC---CeEEEEeCCCCCH-HHHccCCCCEEEECCCCCCc-CCch----HHHHHHHHh-
Q 032797           26 PIIVIDNYDSF-TYNLCQYMGELG---YHFEVYRNDELTV-EELKRKNPRGVLISPGPGAP-QDSG----ISLQTVLEL-   94 (133)
Q Consensus        26 ~i~vid~~~~~-~~~i~~~l~~~G---~~~~v~~~~~~~~-~~l~~~~~DgvIl~GG~~~~-~d~~----~~~~~i~~~-   94 (133)
                      ||+|+++.... ...+.+++++.|   .++++++...... .++  .++||+|++||+.++ .+..    ...++++.+ 
T Consensus         1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~   78 (188)
T cd01741           1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDL--DDYDGLVILGGPMSVDEDDYPWLKKLKELIRQAL   78 (188)
T ss_pred             CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCc--ccCCEEEECCCCccCCccCChHHHHHHHHHHHHH
Confidence            57888765443 457889999988   6888877653222 122  489999999999887 3332    245677764 


Q ss_pred             CCCCCEEEEechHHHHHHHhCCeeeeccCC-cceeee
Q 032797           95 GPTVPLFGVCMGLQCIGEAFGDCAFSAWCH-AWKKFS  130 (133)
Q Consensus        95 ~~~~PvLGIClG~QlLa~a~GG~v~~~~~~-~~g~~~  130 (133)
                      ++++|+||||+|||+|+.++||+|.+.+.. +.|...
T Consensus        79 ~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~~  115 (188)
T cd01741          79 AAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFP  115 (188)
T ss_pred             HCCCCEEEECccHHHHHHHhCCEEecCCCcceeEEEE
Confidence            778999999999999999999999998754 445443

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1.4e-17  Score=138.50  Aligned_cols=113  Identities=27%  Similarity=0.453  Sum_probs=83.6

Q ss_pred             cCCCCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHH----Hcc-CCCCEEEECCCCCCcCCchH--HHHHH
Q 032797           20 SKNNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEE----LKR-KNPRGVLISPGPGAPQDSGI--SLQTV   91 (133)
Q Consensus        20 ~~~~~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~----l~~-~~~DgvIl~GG~~~~~d~~~--~~~~i   91 (133)
                      .+.+..++++||+||+|+.++.+.|.. .|..++++..++...++    +.. --||+||+++|||+|.-...  ...-+
T Consensus        10 ~~~~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl   89 (767)
T KOG1224|consen   10 KSLPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRL   89 (767)
T ss_pred             hhhhheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHH
Confidence            345558999999999999999999977 46655555443343333    221 25999999999999943222  12222


Q ss_pred             HHhCCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797           92 LELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus        92 ~~~~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      ....+++|+||||+|+|.|+.+.|+.|...+++.||.++-+
T Consensus        90 ~~~~~~iPilGICLGfQal~l~hGA~v~~~n~p~HGrvs~i  130 (767)
T KOG1224|consen   90 LLECRDIPILGICLGFQALGLVHGAHVVHANEPVHGRVSGI  130 (767)
T ss_pred             HHhcCCCceeeeehhhHhHhhhcccceecCCCcccceeeeE
Confidence            22356899999999999999999999999999999988743

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.72  E-value=1.9e-17  Score=123.41  Aligned_cols=90  Identities=19%  Similarity=0.262  Sum_probs=71.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc------hHHHHHHHHh-CCCCC
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GPTVP   99 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~------~~~~~~i~~~-~~~~P   99 (133)
                      |+|||++.++...+.+.|++.|+++++++..    +++.  ++|+||++|| +++.+.      ....+.++++ ++++|
T Consensus         1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~----~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~p   73 (198)
T cd01748           1 IAIIDYGMGNLRSVANALERLGAEVIITSDP----EEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKP   73 (198)
T ss_pred             CEEEeCCCChHHHHHHHHHHCCCeEEEEcCh----HHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCc
Confidence            5899999999999999999999999988742    3454  6999999664 443321      1135677774 67999


Q ss_pred             EEEEechHHHHHHH------------hCCeeeeccC
Q 032797          100 LFGVCMGLQCIGEA------------FGDCAFSAWC  123 (133)
Q Consensus       100 vLGIClG~QlLa~a------------~GG~v~~~~~  123 (133)
                      +||||+|+|+|+.+            ++|++.+.+.
T Consensus        74 ilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~  109 (198)
T cd01748          74 FLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPA  109 (198)
T ss_pred             EEEECHHHHHhccccccCCCCCCCCCcceEEEECCC
Confidence            99999999999998            8899998653

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.70  E-value=1.1e-16  Score=119.75  Aligned_cols=90  Identities=20%  Similarity=0.294  Sum_probs=71.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVP   99 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~P   99 (133)
                      |||+|||+++++...+.++|+++|+++++++.    .+++.  ++|++|++|| +.+.+..    ...+.++++ ++++|
T Consensus         1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~~~~~~P   73 (200)
T PRK13143          1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEAARSGKP   73 (200)
T ss_pred             CeEEEEECCCccHHHHHHHHHHCCCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999988753    24453  7999999774 3332221    235667764 78899


Q ss_pred             EEEEechHHHHHHH------------hCCeeeec
Q 032797          100 LFGVCMGLQCIGEA------------FGDCAFSA  121 (133)
Q Consensus       100 vLGIClG~QlLa~a------------~GG~v~~~  121 (133)
                      +||||+|+|+|+.+            +||++.+.
T Consensus        74 ilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~  107 (200)
T PRK13143         74 FLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF  107 (200)
T ss_pred             EEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc
Confidence            99999999999986            78998875

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.69  E-value=1.3e-16  Score=120.34  Aligned_cols=92  Identities=12%  Similarity=0.124  Sum_probs=69.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHHh-
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLEL-   94 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~~-   94 (133)
                      .|||.|||++.++..++.++|++.|.  ++.+++    +.+++.  ++|+|||+|+.....+...      ..++++.. 
T Consensus         1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~----~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~   74 (209)
T PRK13146          1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTA----DPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVL   74 (209)
T ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCCccEEEEC----CHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHH
Confidence            36899999999999999999999998  444432    345664  8999999886332211111      12334444 


Q ss_pred             CCCCCEEEEechHHHHHHH------------hCCeeeec
Q 032797           95 GPTVPLFGVCMGLQCIGEA------------FGDCAFSA  121 (133)
Q Consensus        95 ~~~~PvLGIClG~QlLa~a------------~GG~v~~~  121 (133)
                      +.++|+||||+|||+|+.+            ++|+|.+.
T Consensus        75 ~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~  113 (209)
T PRK13146         75 AAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRF  113 (209)
T ss_pred             hCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEc
Confidence            5889999999999999999            89999886

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.68  E-value=1.2e-16  Score=118.71  Aligned_cols=88  Identities=17%  Similarity=0.287  Sum_probs=66.1

Q ss_pred             CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCC--------------ch---HHHHHHHH
Q 032797           33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQD--------------SG---ISLQTVLE   93 (133)
Q Consensus        33 ~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d--------------~~---~~~~~i~~   93 (133)
                      ++++++++.++|+..|+.+.+++.+. +.++++.  ..+|||||+||+....+              ..   ...+++++
T Consensus        17 ~~~~~~~~~~~l~~~G~~~~iv~~~~-~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   95 (189)
T cd01745          17 RDYLNQYYVDAVRKAGGLPVLLPPVD-DEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRA   95 (189)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEeCCCC-ChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHH
Confidence            45667889999999999999988752 3333221  37999999999864211              11   12566776


Q ss_pred             h-CCCCCEEEEechHHHHHHHhCCeeeec
Q 032797           94 L-GPTVPLFGVCMGLQCIGEAFGDCAFSA  121 (133)
Q Consensus        94 ~-~~~~PvLGIClG~QlLa~a~GG~v~~~  121 (133)
                      + +.++|+||||+|||+|+.++||+|.+.
T Consensus        96 ~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~  124 (189)
T cd01745          96 ALERGKPILGICRGMQLLNVALGGTLYQD  124 (189)
T ss_pred             HHHCCCCEEEEcchHHHHHHHhCCeEEcC
Confidence            4 778999999999999999999999875

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.68  E-value=1.8e-16  Score=118.34  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=70.2

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCCC
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTV   98 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~-~~~~~   98 (133)
                      ||+|||++.++..++.++|++.|++++++..    .+++.  ++|+||++|+ +++.+..      ...+.+++ .+.++
T Consensus         1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~----~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~   73 (199)
T PRK13181          1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSD----PEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQ   73 (199)
T ss_pred             CEEEEeCCCChHHHHHHHHHHCCCcEEEEcC----hHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCC
Confidence            3899999999999999999999999888743    34554  7999999664 4443211      12455665 47889


Q ss_pred             CEEEEechHHHHHHH-----------hCCeeeecc
Q 032797           99 PLFGVCMGLQCIGEA-----------FGDCAFSAW  122 (133)
Q Consensus        99 PvLGIClG~QlLa~a-----------~GG~v~~~~  122 (133)
                      |+||||+|+|+|+.+           +|++|.+.+
T Consensus        74 PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~  108 (199)
T PRK13181         74 PVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFR  108 (199)
T ss_pred             CEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcC
Confidence            999999999999999           789998864

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.67  E-value=1.9e-16  Score=118.47  Aligned_cols=90  Identities=20%  Similarity=0.312  Sum_probs=64.8

Q ss_pred             EEEEEC-CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCCE
Q 032797           27 IIVIDN-YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVPL  100 (133)
Q Consensus        27 i~vid~-~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~Pv  100 (133)
                      |+++++ ...+...+.+++++.|.+++++...  +.+++.  ++|+|||+||++++.+..    ...++|+++ +.++|+
T Consensus         5 vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~--~~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pi   80 (200)
T PRK13527          5 VLALQGDVEEHIDALKRALDELGIDGEVVEVR--RPGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPI   80 (200)
T ss_pred             EEEECCccHHHHHHHHHHHHhcCCCeEEEEeC--ChHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeE
Confidence            344443 2233456788999999988887764  234554  799999999988664221    235677774 788999


Q ss_pred             EEEechHHHHHHHhCC-eeee
Q 032797          101 FGVCMGLQCIGEAFGD-CAFS  120 (133)
Q Consensus       101 LGIClG~QlLa~a~GG-~v~~  120 (133)
                      ||||+|+|+|+.++|| ++..
T Consensus        81 lGIC~G~Qll~~~~gg~~v~~  101 (200)
T PRK13527         81 LGTCAGLILLAKEVGDDRVTK  101 (200)
T ss_pred             EEECHHHHHHHhhhcCCccCC
Confidence            9999999999999998 4433

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.67  E-value=5.8e-16  Score=115.97  Aligned_cols=81  Identities=22%  Similarity=0.392  Sum_probs=63.4

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHH--hCCC
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE--LGPT   97 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~--~~~~   97 (133)
                      ||+|||++.++.+++.++|++.|.++.+++.    .+++.  .+|+||| +|++++.+...      +.+.+++  ++.+
T Consensus         1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~   73 (201)
T PRK13152          1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQK   73 (201)
T ss_pred             CEEEEECCCCcHHHHHHHHHHCCCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCC
Confidence            3899999999999999999999998887654    24554  6999999 66677654422      1244444  3679


Q ss_pred             CCEEEEechHHHHHHH
Q 032797           98 VPLFGVCMGLQCIGEA  113 (133)
Q Consensus        98 ~PvLGIClG~QlLa~a  113 (133)
                      +|+||||+|||+|+.+
T Consensus        74 ~pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         74 KPILGICLGMQLFLER   89 (201)
T ss_pred             CcEEEECHhHHHHhhc
Confidence            9999999999999997

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.66  E-value=3e-16  Score=117.63  Aligned_cols=90  Identities=22%  Similarity=0.234  Sum_probs=70.8

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHHh-CCCC
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GPTV   98 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~~~~   98 (133)
                      +|+|||++.++...+.+.|++.|+++++++.    .+++.  ++|+||++|| +.+.+..      ...++|+++ +.++
T Consensus         1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~   73 (205)
T PRK13141          1 MIAIIDYGMGNLRSVEKALERLGAEAVITSD----PEEIL--AADGVILPGV-GAFPDAMANLRERGLDEVIKEAVASGK   73 (205)
T ss_pred             CEEEEEcCCchHHHHHHHHHHCCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcChHHHHHHHHHCCC
Confidence            5899999999999999999999999998753    34554  7999999775 3322211      134667664 7889


Q ss_pred             CEEEEechHHHHHHH------------hCCeeeecc
Q 032797           99 PLFGVCMGLQCIGEA------------FGDCAFSAW  122 (133)
Q Consensus        99 PvLGIClG~QlLa~a------------~GG~v~~~~  122 (133)
                      |+||||+|+|+|+.+            +||++.+.+
T Consensus        74 pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~  109 (205)
T PRK13141         74 PLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFP  109 (205)
T ss_pred             cEEEECHHHHHhhhccccCCCCCccceEEEEEEEcC
Confidence            999999999999997            778988765

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=99.64  E-value=1e-15  Score=133.64  Aligned_cols=96  Identities=28%  Similarity=0.486  Sum_probs=80.8

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCE
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL  100 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~Pv  100 (133)
                      +...+|+.+|+  +...+..|+|...|+++.++|++. ...   ..+|||+++++|||+|.-.....+-++++ +.++|+
T Consensus       170 Gk~~~I~aiDc--G~K~N~IRcL~~RGa~vtVvPw~~-~i~---~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~Pv  243 (1435)
T KOG0370|consen  170 GKSLRILAIDC--GLKYNQIRCLVKRGAEVTVVPWDY-PIA---KEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPV  243 (1435)
T ss_pred             CcccEEEEccc--CchHHHHHHHHHhCceEEEecCCc-ccc---ccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCe
Confidence            44568999998  678899999999999999999862 222   23799999999999999887777777774 556999


Q ss_pred             EEEechHHHHHHHhCCeeeeccC
Q 032797          101 FGVCMGLQCIGEAFGDCAFSAWC  123 (133)
Q Consensus       101 LGIClG~QlLa~a~GG~v~~~~~  123 (133)
                      +|||+|||+||.|.|++..+++.
T Consensus       244 fGIClGHQllA~AaGakT~KmKy  266 (1435)
T KOG0370|consen  244 FGICLGHQLLALAAGAKTYKMKY  266 (1435)
T ss_pred             EEEehhhHHHHHhhCCceEEeec
Confidence            99999999999999999998754

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=99.63  E-value=1.7e-15  Score=113.22  Aligned_cols=90  Identities=21%  Similarity=0.272  Sum_probs=69.1

Q ss_pred             CCCchHHHHHHHHhCCCeEEEEeCCC---CCHHHHccCCCCEEEECCCCCCcCCchHHH----HHHHHh-CCCCCEEEEe
Q 032797           33 YDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISL----QTVLEL-GPTVPLFGVC  104 (133)
Q Consensus        33 ~~~~~~~i~~~l~~~G~~~~v~~~~~---~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~----~~i~~~-~~~~PvLGIC  104 (133)
                      |++|.+.++..|.+.|.++++++.-.   +..+|++  +|||++|||+..++.++..|+    .+++.+ ..++||+|||
T Consensus        23 yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGIC  100 (245)
T KOG3179|consen   23 YGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGIC  100 (245)
T ss_pred             hcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEe
Confidence            56677778888888898888776421   2234554  699999999998887665543    344554 4679999999


Q ss_pred             chHHHHHHHhCCeeeeccCC
Q 032797          105 MGLQCIGEAFGDCAFSAWCH  124 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~~~  124 (133)
                      +|||++|++.||+|.+++..
T Consensus       101 FGHQiiara~Gg~Vgra~KG  120 (245)
T KOG3179|consen  101 FGHQIIARAKGGKVGRAPKG  120 (245)
T ss_pred             ccHHHHHHhhCCccccCCCC
Confidence            99999999999999998753

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.63  E-value=1.6e-15  Score=113.24  Aligned_cols=89  Identities=17%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHH-hCCCCC
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVP   99 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~-~~~~~P   99 (133)
                      |+|||++.++...+.++|+..|+++++++.+    +++.  ++|+||++| ++++.+...      ...++++ ++.++|
T Consensus         1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~----~~l~--~~d~lii~G-~~~~~~~~~~l~~~~~~~l~~~~~~~~~p   73 (196)
T TIGR01855         1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDS----KEAE--LADKLILPG-VGAFGAAMARLRENGLDLFVELVVRLGKP   73 (196)
T ss_pred             CEEEecCCcHHHHHHHHHHHCCCcEEEEcCH----HHhc--cCCEEEECC-CCCHHHHHHHHHHcCcHHHHHHHHhCCCC
Confidence            5799999999999999999999999998743    3443  799999955 444432211      1233354 478899


Q ss_pred             EEEEechHHHHHHH------------hCCeeeecc
Q 032797          100 LFGVCMGLQCIGEA------------FGDCAFSAW  122 (133)
Q Consensus       100 vLGIClG~QlLa~a------------~GG~v~~~~  122 (133)
                      +||||+|+|+|+.+            +||+|.+.+
T Consensus        74 vlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~  108 (196)
T TIGR01855        74 VLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLE  108 (196)
T ss_pred             EEEECHHHHHhhhccccCCCCCCcceeeEEEEECC
Confidence            99999999999999            789998763

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=99.63  E-value=2.7e-15  Score=113.49  Aligned_cols=90  Identities=17%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPT   97 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~-~~~~   97 (133)
                      |+|.|||++.++..++.++|+..|+++.+++.+    +++.  ++|+||+ ||++++....      .+.+.|++ ++++
T Consensus         2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~----~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~   74 (210)
T CHL00188          2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSE----SELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEG   74 (210)
T ss_pred             cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCH----HHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcC
Confidence            579999999999999999999999999988642    3453  6899887 6667764221      12344555 4678


Q ss_pred             CCEEEEechHHHHHHH-----------hCCeeeec
Q 032797           98 VPLFGVCMGLQCIGEA-----------FGDCAFSA  121 (133)
Q Consensus        98 ~PvLGIClG~QlLa~a-----------~GG~v~~~  121 (133)
                      +|+||||+|||+|++.           ++|+|.+.
T Consensus        75 ~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~  109 (210)
T CHL00188         75 NPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRL  109 (210)
T ss_pred             CCEEEECHHHHHHhhccccCCcCCccceeEEEEEC
Confidence            9999999999999987           56667655

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.60  E-value=6.7e-15  Score=109.47  Aligned_cols=85  Identities=19%  Similarity=0.294  Sum_probs=65.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVP   99 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~P   99 (133)
                      |+|.|+++...+... .++|+..|+++..++.    .+++.  ++|++|++||+.+..+..    .+.++++++ ++++|
T Consensus         2 m~~~i~~~~g~~~~~-~~~l~~~g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~P   74 (189)
T PRK13525          2 MKIGVLALQGAVREH-LAALEALGAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLP   74 (189)
T ss_pred             CEEEEEEcccCHHHH-HHHHHHCCCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCe
Confidence            678999887666644 5778899999888763    24443  799999999987554321    234677775 78999


Q ss_pred             EEEEechHHHHHHHhCC
Q 032797          100 LFGVCMGLQCIGEAFGD  116 (133)
Q Consensus       100 vLGIClG~QlLa~a~GG  116 (133)
                      +||||+|+|+|+.++||
T Consensus        75 ilGIC~G~QlL~~~~gg   91 (189)
T PRK13525         75 VFGTCAGMILLAKEIEG   91 (189)
T ss_pred             EEEECHHHHHHHhhccc
Confidence            99999999999999999

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=99.60  E-value=4.9e-15  Score=110.73  Aligned_cols=82  Identities=23%  Similarity=0.376  Sum_probs=65.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHH-hCC
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGP   96 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~-~~~   96 (133)
                      .++|+|||++.++.+++.++|++.|+++.+..    +++++.  .+|+||+ +|.|+..+...      +.+.|++ ...
T Consensus         1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~----d~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~   73 (204)
T COG0118           1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSR----DPEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVES   73 (204)
T ss_pred             CCEEEEEEcCcchHHHHHHHHHHcCCeeEEec----CHHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHHHHHHhc
Confidence            37899999999999999999999999988764    245664  7999999 66776654432      3566766 467


Q ss_pred             CCCEEEEechHHHHHH
Q 032797           97 TVPLFGVCMGLQCIGE  112 (133)
Q Consensus        97 ~~PvLGIClG~QlLa~  112 (133)
                      ++|+||||+|||+|.+
T Consensus        74 ~kP~LGIClGMQlLfe   89 (204)
T COG0118          74 GKPFLGICLGMQLLFE   89 (204)
T ss_pred             CCCEEEEeHhHHhhhh
Confidence            7999999999999976

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=99.59  E-value=5.5e-15  Score=114.58  Aligned_cols=82  Identities=21%  Similarity=0.278  Sum_probs=59.6

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCC---HHHHccCCCCEEEECCCCCCcC--------Cc--------hHHHHHHHH-hCCCC
Q 032797           39 NLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQ--------DS--------GISLQTVLE-LGPTV   98 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~~~---~~~l~~~~~DgvIl~GG~~~~~--------d~--------~~~~~~i~~-~~~~~   98 (133)
                      .+.+++..+|..+.+++....+   .+++. ..+||+|++||+.+..        +.        ....++++. +++++
T Consensus        30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l-~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~  108 (254)
T PRK11366         30 KYLNAIIHAGGLPIALPHALAEPSLLEQLL-PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI  108 (254)
T ss_pred             HHHHHHHHCCCEEEEecCCCCCHHHHHHHH-HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence            4667788889888888753222   22222 3699999999976441        10        113567777 47899


Q ss_pred             CEEEEechHHHHHHHhCCeeeec
Q 032797           99 PLFGVCMGLQCIGEAFGDCAFSA  121 (133)
Q Consensus        99 PvLGIClG~QlLa~a~GG~v~~~  121 (133)
                      |+||||+|||+|+.++||+|.+.
T Consensus       109 PILGICrG~Qllnva~GGtl~~~  131 (254)
T PRK11366        109 PIFAICRGLQELVVATGGSLHRK  131 (254)
T ss_pred             CEEEECHhHHHHHHHhCCeEeec
Confidence            99999999999999999999975

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=99.59  E-value=2.6e-15  Score=115.28  Aligned_cols=90  Identities=24%  Similarity=0.319  Sum_probs=61.9

Q ss_pred             ECCCCchHHHHHHHHhCCCeEEEEeCCCCC--HH---HHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEe
Q 032797           31 DNYDSFTYNLCQYMGELGYHFEVYRNDELT--VE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC  104 (133)
Q Consensus        31 d~~~~~~~~i~~~l~~~G~~~~v~~~~~~~--~~---~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC  104 (133)
                      |+|+++...+..+..+.+..+.+...+...  ..   +.. .++||||++||++.+.... ..++++. ++.++|+||||
T Consensus        14 day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l-~~~dgivl~GG~~~~~~~~-~~~~i~~~~~~~~PvlGIC   91 (235)
T cd01746          14 DAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEAL-KGADGILVPGGFGIRGVEG-KILAIKYARENNIPFLGIC   91 (235)
T ss_pred             HHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhh-ccCCEEEECCCCCCcchhh-HHHHHHHHHHCCceEEEEE
Confidence            444455555666666666666665433111  11   111 3799999999998776543 3456666 47899999999


Q ss_pred             chHHHHHHHhCCeeeecc
Q 032797          105 MGLQCIGEAFGDCAFSAW  122 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~  122 (133)
                      +|||+|+.++||++.+.+
T Consensus        92 lG~Q~l~~~~g~~~~~~~  109 (235)
T cd01746          92 LGMQLAVIEFARNVLGLP  109 (235)
T ss_pred             hHHHHHHHHHHHHhcCCc
Confidence            999999999999988654

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.57  E-value=3.8e-14  Score=108.16  Aligned_cols=99  Identities=20%  Similarity=0.235  Sum_probs=74.7

Q ss_pred             CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC--------CchHHHHHHHHh-
Q 032797           25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL-   94 (133)
Q Consensus        25 ~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~--------d~~~~~~~i~~~-   94 (133)
                      |||+|+++..++ ...+.++|++.|+++++++....   ++  .++|+|||+||+..-.        ......++++++ 
T Consensus         1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~---~l--~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~   75 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG---SL--PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFA   75 (227)
T ss_pred             CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC---CC--CCCCEEEECCCCcccccccccchhcchHHHHHHHHHH
Confidence            589999998776 46788999999999988876421   23  3799999999864211        012245667764 


Q ss_pred             CCCCCEEEEechHHHHHHH--hCCeeeeccCCccee
Q 032797           95 GPTVPLFGVCMGLQCIGEA--FGDCAFSAWCHAWKK  128 (133)
Q Consensus        95 ~~~~PvLGIClG~QlLa~a--~GG~v~~~~~~~~g~  128 (133)
                      +.++|++|||.|+|+|+.+  ++|++.+....+|+.
T Consensus        76 ~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~  111 (227)
T TIGR01737        76 EKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFIC  111 (227)
T ss_pred             HcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEE
Confidence            7899999999999999996  999998876555543

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.55  E-value=2.6e-14  Score=108.42  Aligned_cols=84  Identities=25%  Similarity=0.398  Sum_probs=54.1

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCC--cCC--------chH--------HHHHHHHh-CC
Q 032797           38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGA--PQD--------SGI--------SLQTVLEL-GP   96 (133)
Q Consensus        38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~--~~d--------~~~--------~~~~i~~~-~~   96 (133)
                      ..+.+++..+|+.+.++|+. .+.+++..  ..+||||++||.-+  |..        ...        ..++++.. ++
T Consensus        27 ~~Yv~~i~~aG~~pv~ip~~-~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~  105 (217)
T PF07722_consen   27 ASYVKAIEAAGGRPVPIPYD-ADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGR  105 (217)
T ss_dssp             HHHHHHHHHTT-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHcCCEEEEEccC-CCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhc
Confidence            46888999999999999986 23333321  38999999999832  211        110        23455553 78


Q ss_pred             CCCEEEEechHHHHHHHhCCeeeecc
Q 032797           97 TVPLFGVCMGLQCIGEAFGDCAFSAW  122 (133)
Q Consensus        97 ~~PvLGIClG~QlLa~a~GG~v~~~~  122 (133)
                      ++|+||||+|||+|+.++||++.+.-
T Consensus       106 ~~PilGICrG~Q~lnv~~GGtl~q~~  131 (217)
T PF07722_consen  106 GKPILGICRGMQLLNVAFGGTLYQDI  131 (217)
T ss_dssp             T--EEEETHHHHHHHHHCCSSEESCC
T ss_pred             CCCEEEEcHHHHHHHHHhCCCceeec
Confidence            99999999999999999999998653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=99.54  E-value=1.4e-14  Score=110.86  Aligned_cols=82  Identities=17%  Similarity=0.306  Sum_probs=58.5

Q ss_pred             HHHHHHHhCCCeEEEEeCC--CCCHHHHccCCCCEEEECCCCC-CcCC----------------chHHHHHHHH-hCCCC
Q 032797           39 NLCQYMGELGYHFEVYRND--ELTVEELKRKNPRGVLISPGPG-APQD----------------SGISLQTVLE-LGPTV   98 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~--~~~~~~l~~~~~DgvIl~GG~~-~~~d----------------~~~~~~~i~~-~~~~~   98 (133)
                      .+.++...+|.-+.++|..  ..+..++. ...||+|+|||.. +|.-                +..++.+|++ +++++
T Consensus        30 ~yv~ai~~aGg~pillP~~~d~~~~~~~l-~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~i  108 (243)
T COG2071          30 DYVDAIIKAGGIPILLPALEDPEDARQYL-DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGI  108 (243)
T ss_pred             HHHHHHHHcCCceEEecCCCCHHHHHHHH-hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCC
Confidence            3566666688888888842  11233333 3799999999932 2211                1124678887 48999


Q ss_pred             CEEEEechHHHHHHHhCCeeeec
Q 032797           99 PLFGVCMGLQCIGEAFGDCAFSA  121 (133)
Q Consensus        99 PvLGIClG~QlLa~a~GG~v~~~  121 (133)
                      |+||||+|+|+|+.||||++++-
T Consensus       109 PILgICRG~QllNVa~GGtL~q~  131 (243)
T COG2071         109 PILGICRGLQLLNVALGGTLYQD  131 (243)
T ss_pred             CEEEEccchHHHHHHhcCeeehh
Confidence            99999999999999999999863

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.54  E-value=2.6e-14  Score=106.87  Aligned_cols=81  Identities=17%  Similarity=0.268  Sum_probs=63.5

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHHhCCCCC
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTVP   99 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~~~~~~P   99 (133)
                      ||+|||++.++..++.++|++.|+++.+++.    .+++.  ++|+||++|+ +++.+...      +.+.|++ ..++|
T Consensus         1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~----~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~P   72 (192)
T PRK13142          1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNT----SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKK   72 (192)
T ss_pred             CEEEEEcCCccHHHHHHHHHHcCCCEEEEeC----HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCe
Confidence            3899999999999999999999999988753    35664  6999988554 66543322      3455655 56899


Q ss_pred             EEEEechHHHHHHHh
Q 032797          100 LFGVCMGLQCIGEAF  114 (133)
Q Consensus       100 vLGIClG~QlLa~a~  114 (133)
                      +||||+|||+|++..
T Consensus        73 vlGIClGmQlL~~~~   87 (192)
T PRK13142         73 MIGICLGMQLMYEHS   87 (192)
T ss_pred             EEEECHHHHHHhhhc
Confidence            999999999999976

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.53  E-value=5.8e-14  Score=106.20  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=63.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCCCC
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVP   99 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~-~~~~~P   99 (133)
                      |+|||++.++..++.++++..+.++.+++.    .+++.  ++|+||++|+ +++.+..      .+.+.|++ ..+++|
T Consensus         2 i~iidyg~gNl~s~~~al~~~~~~~~~~~~----~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~p   74 (210)
T PRK14004          2 IAILDYGMGNIHSCLKAVSLYTKDFVFTSD----PETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKP   74 (210)
T ss_pred             EEEEECCCchHHHHHHHHHHcCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCC
Confidence            899999999999999999999988876642    45564  7999998665 5543321      13455555 478999


Q ss_pred             EEEEechHHHHHHHhC
Q 032797          100 LFGVCMGLQCIGEAFG  115 (133)
Q Consensus       100 vLGIClG~QlLa~a~G  115 (133)
                      +||||+|||+|+.+++
T Consensus        75 ilGiC~G~Q~l~~~~~   90 (210)
T PRK14004         75 LFGICIGFQILFESSE   90 (210)
T ss_pred             EEEECHhHHHHHHhcc
Confidence            9999999999999865

>TIGR00337 PyrG CTP synthase

Probab=99.50  E-value=4.4e-14  Score=118.62  Aligned_cols=102  Identities=18%  Similarity=0.306  Sum_probs=71.3

Q ss_pred             ccccCCCCCeEEEEECCCCch---HHHHHHHHhCCC----eEEEEeCCCCCHHHHc------cCCCCEEEECCCCCCcCC
Q 032797           17 DKKSKNNKNPIIVIDNYDSFT---YNLCQYMGELGY----HFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQD   83 (133)
Q Consensus        17 ~~~~~~~~~~i~vid~~~~~~---~~i~~~l~~~G~----~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~~~~d   83 (133)
                      .-..+....+|+++.-|....   .++.++|..+|+    .+.+.+.+   .+++.      -.++|||+++||++++.+
T Consensus       282 ~~~~~~~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~---se~i~~~~~~~L~~~dGIiLpGG~G~~~~  358 (525)
T TIGR00337       282 KFINPKHEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWID---SEDLEEEGAEFLKGVDGILVPGGFGERGV  358 (525)
T ss_pred             HhhCCCCCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEec---HHHhhhhhhhhhcCCCEEEeCCCCCChhh
Confidence            334455568999995553332   468888988876    33333322   22221      136999999999998876


Q ss_pred             chHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeeeecc
Q 032797           84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAW  122 (133)
Q Consensus        84 ~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~  122 (133)
                      .+.. +.++.+ ++++|+||||+|||+|+.++|+++...+
T Consensus       359 ~g~i-~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~  397 (525)
T TIGR00337       359 EGKI-LAIKYARENNIPFLGICLGMQLAVIEFARNVLGLK  397 (525)
T ss_pred             cChH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCC
Confidence            5543 466664 7889999999999999999999988753

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK05380 pyrG CTP synthetase; Validated

Probab=99.47  E-value=9.4e-14  Score=116.73  Aligned_cols=102  Identities=18%  Similarity=0.331  Sum_probs=70.6

Q ss_pred             ccccccCCCCCeEEEEECCCCch---HHHHHHHHhC----CCeEEEEeCCCCCH------HHHccCCCCEEEECCCCCCc
Q 032797           15 LDDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGEL----GYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAP   81 (133)
Q Consensus        15 ~~~~~~~~~~~~i~vid~~~~~~---~~i~~~l~~~----G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG~~~~   81 (133)
                      .++-+.+....+|+++.-|....   .++.++|+.+    +.++.+.+.+....      +.+  .++||||++||++++
T Consensus       279 ~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L--~~~DGIIlpGGfG~~  356 (533)
T PRK05380        279 VERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELL--KGVDGILVPGGFGER  356 (533)
T ss_pred             HHHHhCCCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHh--hcCCEEEecCCCCcc
Confidence            34445556678999996554332   3566777664    45556555432221      122  379999999999876


Q ss_pred             CCchHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        82 ~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      ...+. .++++.+ ++++|+||||+|||+|+.++||++.
T Consensus       357 ~~~g~-i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~  394 (533)
T PRK05380        357 GIEGK-ILAIRYARENNIPFLGICLGMQLAVIEFARNVL  394 (533)
T ss_pred             ccccH-HHHHHHHHHCCCcEEEEchHHHHHHHHhccccc
Confidence            65543 4566664 7899999999999999999999984

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.45  E-value=6.2e-13  Score=112.52  Aligned_cols=85  Identities=18%  Similarity=0.282  Sum_probs=65.5

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHHh-C
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-G   95 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~   95 (133)
                      ...+|+|||++.++..++.++|++.|+++.+++.    .+++.  .+|++||+|+ +++.+..      .+.+.|+++ +
T Consensus         5 ~~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~----~~~l~--~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~   77 (538)
T PLN02617          5 ADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT----PEDIL--NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQ   77 (538)
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC----hhhhc--cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHH
Confidence            3468999999999999999999999999887753    34553  7999999664 4443211      134566664 7


Q ss_pred             CCCCEEEEechHHHHHHHh
Q 032797           96 PTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        96 ~~~PvLGIClG~QlLa~a~  114 (133)
                      .++|+||||+|||+|++++
T Consensus        78 ~g~PvLGIC~G~QlLa~~~   96 (538)
T PLN02617         78 NDRPFLGICLGLQLLFESS   96 (538)
T ss_pred             cCCCEEEECHHHHHHhhhh
Confidence            7899999999999999973

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.45  E-value=1.4e-12  Score=99.16  Aligned_cols=97  Identities=20%  Similarity=0.226  Sum_probs=74.1

Q ss_pred             CeEEEEECCCCch-HHHHHHHH-hCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC--------CchHHHHHHHHh
Q 032797           25 NPIIVIDNYDSFT-YNLCQYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL   94 (133)
Q Consensus        25 ~~i~vid~~~~~~-~~i~~~l~-~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~--------d~~~~~~~i~~~   94 (133)
                      |||+||.+.+++. ..+.++|+ ..|+++..++..+   .++.  ++|+|||+||+..-.        ....+.++++++
T Consensus         1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~---~~l~--~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~   75 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE---TDLD--GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEF   75 (219)
T ss_pred             CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc---CCCC--CCCEEEECCCCchhhhhccchhhhchHHHHHHHHH
Confidence            5899999988884 56889998 8999988776532   2333  799999999864211        112345677764


Q ss_pred             -CCCCCEEEEechHHHHHHH--hCCeeeeccCCcc
Q 032797           95 -GPTVPLFGVCMGLQCIGEA--FGDCAFSAWCHAW  126 (133)
Q Consensus        95 -~~~~PvLGIClG~QlLa~a--~GG~v~~~~~~~~  126 (133)
                       ++++|++|||.|+|+|+.+  ++|++.+.....|
T Consensus        76 ~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~  110 (219)
T PRK03619         76 AEKGKPVLGICNGFQILTEAGLLPGALTRNASLKF  110 (219)
T ss_pred             HHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcE
Confidence             7899999999999999998  9999998876555

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=99.43  E-value=5.9e-13  Score=98.77  Aligned_cols=82  Identities=18%  Similarity=0.291  Sum_probs=59.7

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC----chHHHHHHHHh-CCCCCE
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVPL  100 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d----~~~~~~~i~~~-~~~~Pv  100 (133)
                      ||.|+.....+. +..++|++.|+++.+++.    .+++.  ++|++||+||+++..+    ...+.+.|+++ ++++|+
T Consensus         1 ~igvl~~qg~~~-e~~~~l~~~g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pi   73 (184)
T TIGR03800         1 KIGVLALQGAVR-EHARALEALGVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPV   73 (184)
T ss_pred             CEEEEEccCCHH-HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcE
Confidence            355554433443 466899999999988764    34453  7999999999765422    12245667774 789999


Q ss_pred             EEEechHHHHHHHh
Q 032797          101 FGVCMGLQCIGEAF  114 (133)
Q Consensus       101 LGIClG~QlLa~a~  114 (133)
                      +|||.|+|+|++++
T Consensus        74 lGIC~G~qlL~~~~   87 (184)
T TIGR03800        74 FGTCAGLIMLAKEI   87 (184)
T ss_pred             EEECHHHHHHHhhh
Confidence            99999999999997

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=99.41  E-value=7.1e-13  Score=97.99  Aligned_cols=81  Identities=22%  Similarity=0.438  Sum_probs=59.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCCCCEE
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVPLF  101 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~----~~~~~~i~~~-~~~~PvL  101 (133)
                      |+++++  .+...+ ++|++.|+++..++..    +++.  ++|++|++||+.+..+.    ....+.|+++ ++++|+|
T Consensus         3 vl~~qg--~~~e~~-~~l~~~g~~v~~v~~~----~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~Pvl   73 (183)
T cd01749           3 VLALQG--DFREHI-RALERLGVEVIEVRTP----EDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVF   73 (183)
T ss_pred             EEEecC--CcHHHH-HHHHHCCCeEEEECCH----HHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEE
Confidence            455554  333333 8899999999887652    3443  79999999997644432    1235667764 7899999


Q ss_pred             EEechHHHHHHHhCC
Q 032797          102 GVCMGLQCIGEAFGD  116 (133)
Q Consensus       102 GIClG~QlLa~a~GG  116 (133)
                      |||+|+|+|+.++|+
T Consensus        74 GiC~G~qlL~~~~~~   88 (183)
T cd01749          74 GTCAGLILLAKEVED   88 (183)
T ss_pred             EECHHHHHHHHHhcc
Confidence            999999999999998

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.41  E-value=1.3e-12  Score=100.28  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=69.5

Q ss_pred             EEEEECCCC-chHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC--C------chH-HHHHHHHh-C
Q 032797           27 IIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--D------SGI-SLQTVLEL-G   95 (133)
Q Consensus        27 i~vid~~~~-~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~--d------~~~-~~~~i~~~-~   95 (133)
                      |+|+-+..+ ....+.++|++.|+++++++..+....+....+||+|||+||+....  .      ... ..++++++ +
T Consensus         1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~   80 (238)
T cd01740           1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE   80 (238)
T ss_pred             CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh
Confidence            355654444 45678899999999999887643211111113799999999964211  1      111 45677775 7


Q ss_pred             CCCCEEEEechHHHHHHH--hCCeeeeccCCcce
Q 032797           96 PTVPLFGVCMGLQCIGEA--FGDCAFSAWCHAWK  127 (133)
Q Consensus        96 ~~~PvLGIClG~QlLa~a--~GG~v~~~~~~~~g  127 (133)
                      +++|+||||.|+|+|+++  ++|++.+.+..++.
T Consensus        81 ~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~  114 (238)
T cd01740          81 RGGLVLGICNGFQILVELGLLPGALIRNKGLKFI  114 (238)
T ss_pred             CCCeEEEECcHHHHHHHcCCCccccccCCCCcee
Confidence            899999999999999998  99998776654443

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.37  E-value=4.6e-12  Score=98.75  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=63.0

Q ss_pred             CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCH--HHHccCCCCEEEECCCCC--CcCCch-----H----HH
Q 032797           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV--EELKRKNPRGVLISPGPG--APQDSG-----I----SL   88 (133)
Q Consensus        23 ~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~--~~l~~~~~DgvIl~GG~~--~~~d~~-----~----~~   88 (133)
                      +.+||+|+.+.+++ .....++|+++|+++++++..+...  .++  .+||+|||+||..  +....+     .    ..
T Consensus         2 ~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l--~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~   79 (261)
T PRK01175          2 ESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSV--SDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLR   79 (261)
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccch--hhCCEEEECCCCCcccccccchhhHHHHHHHHH
Confidence            45799999886554 5677899999999999887532111  122  3799999999953  221211     1    22


Q ss_pred             HHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           89 QTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        89 ~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +.|+++ ++++|+||||+|+|+|+++
T Consensus        80 ~~Ik~f~~~gkpVLGICnG~QlLa~~  105 (261)
T PRK01175         80 KDIEEFIDEGYPIIGICNGFQVLVEL  105 (261)
T ss_pred             HHHHHHHHCCCeEEEECHHHHHHHHC
Confidence            556664 7899999999999999983

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=99.33  E-value=1e-11  Score=97.37  Aligned_cols=81  Identities=15%  Similarity=0.234  Sum_probs=55.9

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCc--h-HHHHHHHHh----CC--CCCEEEEech
Q 032797           38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS--G-ISLQTVLEL----GP--TVPLFGVCMG  106 (133)
Q Consensus        38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~--~-~~~~~i~~~----~~--~~PvLGIClG  106 (133)
                      .+++++++++|+.+..++.+. +.++++.  ..+||||++||+.+....  . ....+++.+    ++  .+|+||||+|
T Consensus        23 ~~Yv~~l~~aG~~vvpi~~~~-~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG  101 (273)
T cd01747          23 ASYVKFLESAGARVVPIWINE-SEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLG  101 (273)
T ss_pred             HHHHHHHHHCCCeEEEEEeCC-cHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHH
Confidence            357889999999977776652 2333322  379999999998765321  1 122333332    22  3899999999


Q ss_pred             HHHHHHHhCCeee
Q 032797          107 LQCIGEAFGDCAF  119 (133)
Q Consensus       107 ~QlLa~a~GG~v~  119 (133)
                      +|+|+.++||++.
T Consensus       102 ~QlL~~~~gg~~~  114 (273)
T cd01747         102 FELLTYLTSGETL  114 (273)
T ss_pred             HHHHHHHhCCCcc
Confidence            9999999999754

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=99.33  E-value=2.7e-11  Score=96.12  Aligned_cols=106  Identities=13%  Similarity=0.097  Sum_probs=67.2

Q ss_pred             CCeEEEEECCCCch---HHHHHHHHhCCCe--EEEEeCCC---------------CCHHHHccCCCCEEEECCCCCC--c
Q 032797           24 KNPIIVIDNYDSFT---YNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISPGPGA--P   81 (133)
Q Consensus        24 ~~~i~vid~~~~~~---~~i~~~l~~~G~~--~~v~~~~~---------------~~~~~l~~~~~DgvIl~GG~~~--~   81 (133)
                      +.+|+|++.-..-.   ..+.+.|.....+  ++......               .+.+++...+|||+||||+|-+  +
T Consensus        35 pl~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~  114 (302)
T PRK05368         35 PLKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLP  114 (302)
T ss_pred             CccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCcc
Confidence            47899998643221   2356666543333  44433221               2345565568999999999987  5


Q ss_pred             CCchH-H---HHHHHHh-CCCCCEEEEechHHHHHHHhCCeee-eccCCcceee
Q 032797           82 QDSGI-S---LQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF-SAWCHAWKKF  129 (133)
Q Consensus        82 ~d~~~-~---~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~-~~~~~~~g~~  129 (133)
                      +++.. +   .++++.. +..+|+||||+|||+++.++||... ..++.++|..
T Consensus       115 fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~  168 (302)
T PRK05368        115 FEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVF  168 (302)
T ss_pred             CCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEE
Confidence            54432 2   2233322 4679999999999999999999622 3345677754

>PLN02327 CTP synthase

Probab=99.31  E-value=3.2e-12  Score=107.89  Aligned_cols=102  Identities=18%  Similarity=0.288  Sum_probs=69.0

Q ss_pred             cccccCCCCCeEEEEECC----CCchHHHHHHHHh----CCCeEEEEeCCCCCH----------------HHHccCCCCE
Q 032797           16 DDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGE----LGYHFEVYRNDELTV----------------EELKRKNPRG   71 (133)
Q Consensus        16 ~~~~~~~~~~~i~vid~~----~~~~~~i~~~l~~----~G~~~~v~~~~~~~~----------------~~l~~~~~Dg   71 (133)
                      ++.+.+....+|+++.-|    |+|. ++.++|+.    .+.++++...+....                +.+  .++||
T Consensus       289 ~~~~~~~~~v~IalVGKY~~l~DAY~-Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L--~~~DG  365 (557)
T PLN02327        289 ESCDNLTEPVRIAMVGKYTGLSDSYL-SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLL--KGADG  365 (557)
T ss_pred             HHHhCCCCceEEEEEecccCCcHhHH-HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhh--ccCCE
Confidence            333455566899999544    3332 46666665    455666554321111                112  37999


Q ss_pred             EEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeeeec
Q 032797           72 VLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSA  121 (133)
Q Consensus        72 vIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~  121 (133)
                      |+++||++++...+.. ..++.. ++++|+||||+|||+++.+|+..|...
T Consensus       366 IvvpGGfG~~~~~G~i-~ai~~are~~iP~LGIClGmQl~viefaRnvlG~  415 (557)
T PLN02327        366 ILVPGGFGDRGVEGKI-LAAKYARENKVPYLGICLGMQIAVIEFARSVLGL  415 (557)
T ss_pred             EEeCCCCCCcccccHH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC
Confidence            9999999887666553 455554 789999999999999999999987653

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.31  E-value=1.2e-11  Score=91.56  Aligned_cols=91  Identities=11%  Similarity=0.220  Sum_probs=65.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCc--C--CchHHHHHHHHhCCCCCE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP--Q--DSGISLQTVLELGPTVPL  100 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~--~--d~~~~~~~i~~~~~~~Pv  100 (133)
                      +||.|+..++.+.. -.++|++.|+++.+++.    .+++.  ++|++||+||++..  .  +...+.+.|+++.+++|+
T Consensus         3 ~~igVLalqG~~~E-h~~al~~lG~~v~~v~~----~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpi   75 (179)
T PRK13526          3 QKVGVLAIQGGYQK-HADMFKSLGVEVKLVKF----NNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPV   75 (179)
T ss_pred             cEEEEEECCccHHH-HHHHHHHcCCcEEEECC----HHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcE
Confidence            78999988777654 66789999998777653    45554  79999999985533  1  112256777775347899


Q ss_pred             EEEechHHHHHH---HhC---Ceeeecc
Q 032797          101 FGVCMGLQCIGE---AFG---DCAFSAW  122 (133)
Q Consensus       101 LGIClG~QlLa~---a~G---G~v~~~~  122 (133)
                      +|||.|+|+|+.   -||   ++|.+..
T Consensus        76 lGICaG~qlL~~~s~~Lg~idg~V~Rn~  103 (179)
T PRK13526         76 FGTCAGSIILSKGEGYLNLLDLEVQRNA  103 (179)
T ss_pred             EEEcHHHHHHHccCCCCCCccEEEEEcC
Confidence            999999999998   344   5665543

>PRK06186 hypothetical protein; Validated

Probab=99.30  E-value=4.8e-12  Score=96.86  Aligned_cols=90  Identities=17%  Similarity=0.269  Sum_probs=60.8

Q ss_pred             CeEEEEECC----CCchHHHHHHHHh----CCCeEEEEeCCCCCHH---HHccCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797           25 NPIIVIDNY----DSFTYNLCQYMGE----LGYHFEVYRNDELTVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLE   93 (133)
Q Consensus        25 ~~i~vid~~----~~~~~~i~~~l~~----~G~~~~v~~~~~~~~~---~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~   93 (133)
                      .+|+++.-|    |+|. ++.++|+.    .+.++++...+....+   .+  .++|||+++||.|....++.. .+++.
T Consensus         2 v~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l--~~~dgilvpgGfg~rg~~Gki-~ai~~   77 (229)
T PRK06186          2 LRIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDL--AGFDGIWCVPGSPYRNDDGAL-TAIRF   77 (229)
T ss_pred             cEEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhH--hhCCeeEeCCCCCcccHhHHH-HHHHH
Confidence            578888544    4443 46666765    4566666544322221   23  379999999998865555554 56766


Q ss_pred             h-CCCCCEEEEechHHHHHHHhCCee
Q 032797           94 L-GPTVPLFGVCMGLQCIGEAFGDCA  118 (133)
Q Consensus        94 ~-~~~~PvLGIClG~QlLa~a~GG~v  118 (133)
                      . ++++|+||||+|||++...++..+
T Consensus        78 Are~~iP~LGIClGmQ~avIe~arnv  103 (229)
T PRK06186         78 ARENGIPFLGTCGGFQHALLEYARNV  103 (229)
T ss_pred             HHHcCCCeEeechhhHHHHHHHHhhh
Confidence            4 889999999999998777666655

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=99.29  E-value=1e-11  Score=96.11  Aligned_cols=83  Identities=23%  Similarity=0.314  Sum_probs=61.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC----chHHHHHHHHh-CCCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVP   99 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d----~~~~~~~i~~~-~~~~P   99 (133)
                      |+|.|+.+++++.. ..++|++.|+++.+++.    .+++.  ++|+|||+||......    ...+.+.|+++ ++++|
T Consensus         2 m~igVLa~qG~~~e-~~~aL~~lG~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~P   74 (248)
T PLN02832          2 MAIGVLALQGSFNE-HIAALRRLGVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKP   74 (248)
T ss_pred             cEEEEEeCCCchHH-HHHHHHHCCCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCC
Confidence            58999998877754 46899999998877754    35664  7999999997543211    11245566664 67999


Q ss_pred             EEEEechHHHHHHHh
Q 032797          100 LFGVCMGLQCIGEAF  114 (133)
Q Consensus       100 vLGIClG~QlLa~a~  114 (133)
                      +||||.|||+|++..
T Consensus        75 vLGiC~GmqlLa~~~   89 (248)
T PLN02832         75 VWGTCAGLIFLAERA   89 (248)
T ss_pred             EEEEChhHHHHHHHh
Confidence            999999999999865

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.25  E-value=4.7e-11  Score=90.74  Aligned_cols=95  Identities=18%  Similarity=0.320  Sum_probs=67.7

Q ss_pred             CCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCchH------HHHHHHHh
Q 032797           24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI------SLQTVLEL   94 (133)
Q Consensus        24 ~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~~------~~~~i~~~   94 (133)
                      .||++||-+..++- .....+++.+|.+++.++..+...   . .+||++|++||..  +....+.      .++.++++
T Consensus         2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~---~-~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~   77 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLL---G-RDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREF   77 (231)
T ss_pred             CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeeccc---C-CCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHH
Confidence            57999998877664 457888999999999887642211   1 1699999999953  3333332      34556664


Q ss_pred             -CCCCCEEEEechHHHHHH--HhCCeeeecc
Q 032797           95 -GPTVPLFGVCMGLQCIGE--AFGDCAFSAW  122 (133)
Q Consensus        95 -~~~~PvLGIClG~QlLa~--a~GG~v~~~~  122 (133)
                       ++++|+||||-|+|+|.+  .+-|.+.++.
T Consensus        78 a~~g~~vLGICNGfQiL~e~gLlPGal~~N~  108 (231)
T COG0047          78 AEKGKPVLGICNGFQILSEAGLLPGALTRNE  108 (231)
T ss_pred             HHCCCeEEEEcchhHHHHHcCcCCcceecCC
Confidence             799999999999999986  3445555543

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=99.20  E-value=6.7e-11  Score=88.20  Aligned_cols=83  Identities=20%  Similarity=0.199  Sum_probs=61.3

Q ss_pred             EEEEECC-CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-----hHHHHHHHHh-CCCCC
Q 032797           27 IIVIDNY-DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL-GPTVP   99 (133)
Q Consensus        27 i~vid~~-~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-----~~~~~~i~~~-~~~~P   99 (133)
                      |+++++. .++..++.+.++..|+++++++...    ++  .++|+|||+||.....+.     ..+.+.|+++ ++++|
T Consensus         1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~----~~--~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~p   74 (194)
T cd01750           1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPE----GL--GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGP   74 (194)
T ss_pred             CEeecCCCccCHHHHHHHHhcCCceEEEEeCCC----CC--CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCc
Confidence            4677764 4677789999999999999887642    22  378999998887322111     1245567664 78999


Q ss_pred             EEEEechHHHHHHHhC
Q 032797          100 LFGVCMGLQCIGEAFG  115 (133)
Q Consensus       100 vLGIClG~QlLa~a~G  115 (133)
                      +||||.|+|+|++.+.
T Consensus        75 vlgiC~G~qlL~~~~~   90 (194)
T cd01750          75 VLGICGGYQMLGKYIV   90 (194)
T ss_pred             EEEECHHHHHhhhhcc
Confidence            9999999999999884

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.12  E-value=2.5e-10  Score=94.90  Aligned_cols=98  Identities=19%  Similarity=0.376  Sum_probs=64.4

Q ss_pred             ccCCCCCeEEEEECCC----CchHHHHHHHHhCC----CeEEEEeCCCCCHH-----HHccCCCCEEEECCCCCCcCCch
Q 032797           19 KSKNNKNPIIVIDNYD----SFTYNLCQYMGELG----YHFEVYRNDELTVE-----ELKRKNPRGVLISPGPGAPQDSG   85 (133)
Q Consensus        19 ~~~~~~~~i~vid~~~----~~~~~i~~~l~~~G----~~~~v~~~~~~~~~-----~l~~~~~DgvIl~GG~~~~~d~~   85 (133)
                      +++....+|+++.-|.    +|. ++.++|+.+|    .++.+.+.+....+     .+.. .+|||+++||.|.-..++
T Consensus       283 ~~~~~~v~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG~eG  360 (533)
T COG0504         283 KNPKKEVTIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRGVEG  360 (533)
T ss_pred             cCCCCceEEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCchHH
Confidence            3344447899995443    443 5677787654    45555544322211     2221 399999999998665666


Q ss_pred             HHHHHHHH-hCCCCCEEEEechHHHHHHHhCCeee
Q 032797           86 ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        86 ~~~~~i~~-~~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      .. ..++. .++++|+||||+|||+....|--.|.
T Consensus       361 kI-~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~  394 (533)
T COG0504         361 KI-AAIRYARENNIPFLGICLGMQLAVIEFARNVL  394 (533)
T ss_pred             HH-HHHHHHHhcCCCEEEEchhHHHHHHHHHHHhc
Confidence            54 45665 48899999999999999887655444

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.91  E-value=3.6e-09  Score=79.19  Aligned_cols=72  Identities=17%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-----CchHHHHHHHHh-CCCCCEEEEechHHHHHH
Q 032797           39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGE  112 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-----d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~  112 (133)
                      .-.+.|++.|+++.+++..  ..++++  ++|+|||+||.....     +...+.+.|+++ ++++|++|||.|+|+|++
T Consensus        15 e~~~~l~~~G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~   90 (198)
T cd03130          15 ENLELLEAAGAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGE   90 (198)
T ss_pred             HHHHHHHHCCCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHH
Confidence            3456788999998887542  112343  499999999743211     111245667764 778999999999999998


Q ss_pred             Hh
Q 032797          113 AF  114 (133)
Q Consensus       113 a~  114 (133)
                      .+
T Consensus        91 ~~   92 (198)
T cd03130          91 SL   92 (198)
T ss_pred             Hh
Confidence            76

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=98.88  E-value=2.5e-08  Score=75.93  Aligned_cols=91  Identities=16%  Similarity=0.201  Sum_probs=62.1

Q ss_pred             CeEEEEEC----CCCch----HHHHHHHHhCCCeEEEEeCCC--------------------------------CCHHHH
Q 032797           25 NPIIVIDN----YDSFT----YNLCQYMGELGYHFEVYRNDE--------------------------------LTVEEL   64 (133)
Q Consensus        25 ~~i~vid~----~~~~~----~~i~~~l~~~G~~~~v~~~~~--------------------------------~~~~~l   64 (133)
                      +||+|+-.    .+++.    -...+.|++.|++++++.+..                                .+++++
T Consensus         2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v   81 (217)
T PRK11780          2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEA   81 (217)
T ss_pred             CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHC
Confidence            46777642    23332    235678999999998875321                                112233


Q ss_pred             ccCCCCEEEECCCCCCcC---C----------chHHHHHHHHh-CCCCCEEEEechHHHHHHHhC
Q 032797           65 KRKNPRGVLISPGPGAPQ---D----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (133)
Q Consensus        65 ~~~~~DgvIl~GG~~~~~---d----------~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G  115 (133)
                      ...+||+|+|+||.+...   |          .....++++++ ++++|+.+||+|-|+|+.++|
T Consensus        82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~  146 (217)
T PRK11780         82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG  146 (217)
T ss_pred             ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc
Confidence            335799999999966421   1          33467888885 889999999999999999873

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.88  E-value=2.2e-09  Score=83.72  Aligned_cols=93  Identities=18%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             CCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCchH-----------HHH
Q 032797           24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------SLQ   89 (133)
Q Consensus        24 ~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~~-----------~~~   89 (133)
                      ++||+|+-+.++. ......+|+..|++++.+...+....+....+||+++|+||..  +....+.           +.+
T Consensus         1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~   80 (259)
T PF13507_consen    1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMD   80 (259)
T ss_dssp             --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHH
Confidence            3689999876665 5678899999999999887542100111124899999999964  2222221           245


Q ss_pred             HHHHh-CC-CCCEEEEechHHHHHHH--hCC
Q 032797           90 TVLEL-GP-TVPLFGVCMGLQCIGEA--FGD  116 (133)
Q Consensus        90 ~i~~~-~~-~~PvLGIClG~QlLa~a--~GG  116 (133)
                      .|+++ ++ ++|+||||-|+|+|.+.  +.+
T Consensus        81 ~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~  111 (259)
T PF13507_consen   81 AIREFLERPGGFVLGICNGFQILVELGLLPG  111 (259)
T ss_dssp             HHHHHHHCTT-EEEEECHHHHHHCCCCCSTT
T ss_pred             HHHHHHhcCCCeEEEEchHhHHHHHhCcCCC
Confidence            56664 55 99999999999999875  666

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=98.77  E-value=3.5e-08  Score=81.52  Aligned_cols=52  Identities=23%  Similarity=0.462  Sum_probs=40.6

Q ss_pred             CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEechHHHHHHHhCCeee
Q 032797           68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      ..|||+++||.|+..-.+...+.-++.++++|+||||+|||+....|--++.
T Consensus       363 ~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvL  414 (585)
T KOG2387|consen  363 SADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVL  414 (585)
T ss_pred             cCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhh
Confidence            6899999999987766666543333348899999999999999887765544

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.73  E-value=4.4e-08  Score=82.21  Aligned_cols=79  Identities=18%  Similarity=0.327  Sum_probs=51.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHccCCCCEEEECCCCCC-cCCc-hHHHHHHHHhCCCCCEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLF  101 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~-~~d~-~~~~~~i~~~~~~~PvL  101 (133)
                      |+|-|+.-.     +..++++..|. +++++..+  +.+++.  ++|+|||+||... ..+. ..+.+.|+++  ++|+|
T Consensus         1 m~iGvlal~-----sv~~al~~lg~~~~~vv~~~--~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvl   69 (476)
T PRK06278          1 MEIGLLDIK-----GSLPCFENFGNLPTKIIDEN--NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYII   69 (476)
T ss_pred             CEEEEEehh-----hHHHHHHHhcCCCcEEEEeC--ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEE
Confidence            467777653     44566777765 56665543  346665  7999999997421 1111 1233444444  79999


Q ss_pred             EEechHHHHHHHh
Q 032797          102 GVCMGLQCIGEAF  114 (133)
Q Consensus       102 GIClG~QlLa~a~  114 (133)
                      |||.|+|||++..
T Consensus        70 GICgG~QmLg~~~   82 (476)
T PRK06278         70 GICSGFQILSEKI   82 (476)
T ss_pred             EEcHHHHhccccc
Confidence            9999999999875

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.72  E-value=1.1e-07  Score=61.16  Aligned_cols=73  Identities=26%  Similarity=0.481  Sum_probs=53.4

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHH-HHccCCCCEEEECCCCCCcCCc---hHHHHHHHHh-CCCCCEEEEechHHHH
Q 032797           38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLEL-GPTVPLFGVCMGLQCI  110 (133)
Q Consensus        38 ~~i~~~l~~~G~~~~v~~~~~~~~~-~l~~~~~DgvIl~GG~~~~~d~---~~~~~~i~~~-~~~~PvLGIClG~QlL  110 (133)
                      ..+.+.++..++++++++....... .....++|+++++||...+...   ....+.+++. .+++|++|+|.|+|++
T Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            4577889999999998876532111 0112479999999998765543   4456777764 7789999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=98.71  E-value=1.2e-07  Score=72.05  Aligned_cols=76  Identities=17%  Similarity=0.261  Sum_probs=54.9

Q ss_pred             HHHHHHhCCCeEEEEeCCC--------------------------------CCHHHHccCCCCEEEECCCCCCc---CC-
Q 032797           40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD-   83 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~~--------------------------------~~~~~l~~~~~DgvIl~GG~~~~---~d-   83 (133)
                      ..+.|++.|+++++..+..                                .+.+++...+||+|+|+||.+..   .| 
T Consensus        22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~  101 (213)
T cd03133          22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF  101 (213)
T ss_pred             HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence            5678899999998875421                                11233333479999999996532   12 


Q ss_pred             ---------chHHHHHHHHh-CCCCCEEEEechHHHHHHHhC
Q 032797           84 ---------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (133)
Q Consensus        84 ---------~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G  115 (133)
                               ...+.++++++ ++++|+.+||.|.++|+.+.+
T Consensus       102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~  143 (213)
T cd03133         102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG  143 (213)
T ss_pred             cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence                     33467788875 889999999999999999884

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=98.66  E-value=1.7e-08  Score=74.49  Aligned_cols=67  Identities=7%  Similarity=-0.010  Sum_probs=47.5

Q ss_pred             HHccCCCCEEEECCCCCCcCCch---H---HHHHHHHh-CCCCCEEEEechHHHHHHHhCCee-eeccCCcceee
Q 032797           63 ELKRKNPRGVLISPGPGAPQDSG---I---SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCA-FSAWCHAWKKF  129 (133)
Q Consensus        63 ~l~~~~~DgvIl~GG~~~~~d~~---~---~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v-~~~~~~~~g~~  129 (133)
                      ++....|||+||||.|-.-.+..   .   +.+++.-. ++..|+|+||+|+|+...++||.. .+.++..+|..
T Consensus        57 ~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gvf  131 (175)
T cd03131          57 DIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGVF  131 (175)
T ss_pred             HccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEEEE
Confidence            34456899999999987433222   1   22233222 577999999999999999999975 66777777654

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.65  E-value=1.6e-07  Score=68.70  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=36.7

Q ss_pred             CCCEEEECCCCCCcC--CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           68 NPRGVLISPGPGAPQ--DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        68 ~~DgvIl~GG~~~~~--d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +||+++++||++...  ......++++++ ++++|+.+||.|.++|+.+
T Consensus        76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a  124 (180)
T cd03169          76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA  124 (180)
T ss_pred             HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence            689999999975221  234467788874 7899999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=98.65  E-value=1.7e-07  Score=75.70  Aligned_cols=92  Identities=14%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCCC
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTV   98 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~-~~~~~   98 (133)
                      -|.++|++.+..+++..+|+.+|+++..+..    +.++.  +.|.+|+ +|.|+.....      -+.+.+++ .+.++
T Consensus         3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~----P~DI~--~a~rLIf-PGVGnfg~~~D~L~~~Gf~eplr~Yiesgk   75 (541)
T KOG0623|consen    3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQT----PGDIL--NADRLIF-PGVGNFGPAMDVLNRTGFAEPLRKYIESGK   75 (541)
T ss_pred             eEEEEecCCccHHHHHHHHHhcCceeeeccC----chhhc--cCceEee-cCcccchHHHHHHhhhhhHHHHHHHHhcCC
Confidence            4678999999999999999999999887654    34564  7899999 4555433111      13456666 48999


Q ss_pred             CEEEEechHHHHHHHhCCeeeeccCCcce
Q 032797           99 PLFGVCMGLQCIGEAFGDCAFSAWCHAWK  127 (133)
Q Consensus        99 PvLGIClG~QlLa~a~GG~v~~~~~~~~g  127 (133)
                      |++|||.|.|+|.   -|+++..+..+.|
T Consensus        76 PfmgicvGlQaLF---~gSvE~p~skGLg  101 (541)
T KOG0623|consen   76 PFMGICVGLQALF---DGSVENPPSKGLG  101 (541)
T ss_pred             CeEeehhhHHHHh---cccccCCCcCccc
Confidence            9999999999985   5666655444443

>PRK00784 cobyric acid synthase; Provisional

Probab=98.64  E-value=7.9e-08  Score=80.78  Aligned_cols=85  Identities=18%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-----HHHHHHHHh-CC
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-GP   96 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-----~~~~~i~~~-~~   96 (133)
                      ..+|+|+.+...|...=.+.|++ .|++++.++..    ++++  ++|+|+|+||.....+..     .+.+.|+++ ++
T Consensus       251 ~~~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~~----~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~  324 (488)
T PRK00784        251 ALRIAVIRLPRISNFTDFDPLRAEPGVDVRYVRPG----EPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHARR  324 (488)
T ss_pred             ceEEEEEeCCCcCCccChHHHhhcCCCeEEEECCc----cccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHc
Confidence            36899997433332222345665 89998877642    2454  799999999864322211     134566664 78


Q ss_pred             CCCEEEEechHHHHHHHh
Q 032797           97 TVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        97 ~~PvLGIClG~QlLa~a~  114 (133)
                      ++|+||||.|+|+|++.+
T Consensus       325 g~pilg~C~G~~~L~~~~  342 (488)
T PRK00784        325 GGPVLGICGGYQMLGRRI  342 (488)
T ss_pred             CCeEEEECHHHHHHhhhc
Confidence            999999999999999987

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.56  E-value=3.6e-07  Score=56.30  Aligned_cols=73  Identities=26%  Similarity=0.477  Sum_probs=52.1

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHH-HHccCCCCEEEECCCCCCcCCc---hHHHHHHHH-hCCCCCEEEEechHHHH
Q 032797           38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI  110 (133)
Q Consensus        38 ~~i~~~l~~~G~~~~v~~~~~~~~~-~l~~~~~DgvIl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIClG~QlL  110 (133)
                      ..+.+.+++.++.+.+++....... .....++|++|++||+..+...   ....+++.+ ..+++|++|+|.|+|++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            4677888889999988876432211 1123489999999998866543   445566655 46789999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=98.56  E-value=3.2e-07  Score=65.95  Aligned_cols=75  Identities=17%  Similarity=0.275  Sum_probs=52.3

Q ss_pred             HHHHHHHhCCCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEE
Q 032797           39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF  101 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvL  101 (133)
                      .+.+.|++.|+++.++....              .+.++....+||+++++||++.-  .......++++++ ++++|+.
T Consensus        17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~   96 (166)
T TIGR01382        17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVA   96 (166)
T ss_pred             HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEE
Confidence            35677888898887764321              11222222369999999996521  1234567888885 7899999


Q ss_pred             EEechHHHHHHH
Q 032797          102 GVCMGLQCIGEA  113 (133)
Q Consensus       102 GIClG~QlLa~a  113 (133)
                      +||.|.++|+.+
T Consensus        97 ~ic~G~~~La~a  108 (166)
T TIGR01382        97 AICHGPQLLISA  108 (166)
T ss_pred             EEChHHHHHHhc
Confidence            999999999985

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.54  E-value=5.4e-07  Score=82.98  Aligned_cols=90  Identities=22%  Similarity=0.236  Sum_probs=63.7

Q ss_pred             CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCC--CcCCchH----------
Q 032797           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPG--APQDSGI----------   86 (133)
Q Consensus        22 ~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~--~~~d~~~----------   86 (133)
                      ...+||+|+-+.+++ .....++|+.+|++++.+...+..  ...+  .+|++++++||..  +..+.+.          
T Consensus      1035 ~~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L--~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~ 1112 (1307)
T PLN03206       1035 TSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISL--DDFRGIVFVGGFSYADVLDSAKGWAGSIRFNE 1112 (1307)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccc--cceeEEEEcCcCCCccccchHHHHHHHHHhCh
Confidence            456899999876665 456888999999998777653211  1123  3799999999963  4444331          


Q ss_pred             -HHHHHHHh--CCCCCEEEEechHHHHHHH
Q 032797           87 -SLQTVLEL--GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        87 -~~~~i~~~--~~~~PvLGIClG~QlLa~a  113 (133)
                       ..+.++++  ..+.++||||.|+|+|...
T Consensus      1113 ~~~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206       1113 PLLQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred             HHHHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence             23445553  4699999999999999884

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.52  E-value=7.6e-07  Score=81.61  Aligned_cols=92  Identities=13%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCC-------CHHHHc--cCCCCEEEECCCCC--CcCCch----
Q 032797           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDEL-------TVEELK--RKNPRGVLISPGPG--APQDSG----   85 (133)
Q Consensus        22 ~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~-------~~~~l~--~~~~DgvIl~GG~~--~~~d~~----   85 (133)
                      ...+||+|+-+.+++ .....++|+++|++++.+...+.       +.+.+.  -.++++++++||..  +..+..    
T Consensus       975 ~~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~ 1054 (1239)
T TIGR01857       975 VEKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFI 1054 (1239)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHH
Confidence            356899999887666 45688899999999877764322       112221  14799999999964  322221    


Q ss_pred             -------HHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           86 -------ISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        86 -------~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                             ...+.+.++ +++.++||||.|+|+|...
T Consensus      1055 aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857      1055 AAILRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred             HHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence                   123445453 7899999999999999884

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.52  E-value=5.6e-07  Score=74.98  Aligned_cols=86  Identities=16%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             CCeEEEEECCCCchHH---HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-----CchHHHHHHHHh-
Q 032797           24 KNPIIVIDNYDSFTYN---LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-   94 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~---i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-----d~~~~~~~i~~~-   94 (133)
                      +.+|+|+-.. .|...   =.+.|++.|+++..++..  ..++++  ++|+|+|+||....+     ....+.+.|+++ 
T Consensus       245 ~~~iava~d~-af~f~y~e~~~~L~~~g~~~~~~~~~--~~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~  319 (451)
T PRK01077        245 GVRIAVARDA-AFNFYYPENLELLRAAGAELVFFSPL--ADEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAA  319 (451)
T ss_pred             CceEEEEecC-cccccHHHHHHHHHHCCCEEEEeCCc--CCCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHH
Confidence            3688888422 33222   346688899988877542  122343  799999999963221     112246777775 


Q ss_pred             CCCCCEEEEechHHHHHHHh
Q 032797           95 GPTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        95 ~~~~PvLGIClG~QlLa~a~  114 (133)
                      ++++|++|||-|+|+|++.+
T Consensus       320 ~~g~~i~aiCgG~~~L~~~i  339 (451)
T PRK01077        320 AAGKPIYAECGGLMYLGESL  339 (451)
T ss_pred             HcCCCEEEEcHHHHHHHhhh
Confidence            78899999999999999987

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.49  E-value=7.1e-07  Score=82.42  Aligned_cols=92  Identities=13%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCchH-----------H
Q 032797           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------S   87 (133)
Q Consensus        22 ~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~~-----------~   87 (133)
                      .+.+||+|+-+.+.+ ......+|+.+|+++..+...+.......-.+|++++++||..  +....+.           .
T Consensus      1053 ~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~ 1132 (1310)
T TIGR01735      1053 GVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRL 1132 (1310)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHH
Confidence            456899999876665 4568889999999888776533221121113799999999953  3322222           2


Q ss_pred             HHHHHH-h-CCCCCEEEEechHHHHHHH
Q 032797           88 LQTVLE-L-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        88 ~~~i~~-~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+.+++ + ..+.++||||.|+|+|...
T Consensus      1133 ~~~~~~f~~~~d~~~LGiCNGfQ~L~~~ 1160 (1310)
T TIGR01735      1133 RDQFQAFFKRPDTFSLGVCNGCQMLSNL 1160 (1310)
T ss_pred             HHHHHHHHhCCCceEEEecHHHHHHHHH
Confidence            344545 3 6899999999999999943

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.47  E-value=1e-06  Score=81.39  Aligned_cols=89  Identities=13%  Similarity=0.219  Sum_probs=62.9

Q ss_pred             CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCH--HHHccCCCCEEEECCCCC--CcCCchH-----------
Q 032797           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV--EELKRKNPRGVLISPGPG--APQDSGI-----------   86 (133)
Q Consensus        23 ~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~--~~l~~~~~DgvIl~GG~~--~~~d~~~-----------   86 (133)
                      ..+||+|+-+.+++ ......+|+.+|++++.+...+...  ..+  .++++++++||..  +....+.           
T Consensus      1034 ~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l--~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~ 1111 (1290)
T PRK05297       1034 ARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTL--EDFKGLVACGGFSYGDVLGAGEGWAKSILFNPR 1111 (1290)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCCh--hhCcEEEECCccCCcccchHHHHHHHHhhccHH
Confidence            56899999876665 4568889999999987776432221  123  3799999999953  3222221           


Q ss_pred             HHHHHHH-h-CCCCCEEEEechHHHHHHH
Q 032797           87 SLQTVLE-L-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        87 ~~~~i~~-~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ..+.+++ + ..+.++||||.|+|+|...
T Consensus      1112 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297       1112 LRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred             HHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence            2344555 3 6799999999999999985

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=98.45  E-value=1.1e-06  Score=63.12  Aligned_cols=74  Identities=15%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             HHHHHHhCCCeEEEEeCC-CC---------------CHHHHccCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCE
Q 032797           40 LCQYMGELGYHFEVYRND-EL---------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPL  100 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~-~~---------------~~~~l~~~~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~Pv  100 (133)
                      +.+.|+..|++++++..+ ..               +.++....+||+++++||++..  .+.....++|+++ .+++|+
T Consensus        18 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i   97 (165)
T cd03134          18 PLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPV   97 (165)
T ss_pred             HHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeE
Confidence            566788889988887544 11               1122222368999999997422  1334567888875 789999


Q ss_pred             EEEechHHHHHHH
Q 032797          101 FGVCMGLQCIGEA  113 (133)
Q Consensus       101 LGIClG~QlLa~a  113 (133)
                      .+||.|.++|+.+
T Consensus        98 ~~ic~G~~~La~a  110 (165)
T cd03134          98 AAICHGPWVLISA  110 (165)
T ss_pred             EEEchHHHHHHhc
Confidence            9999999999874

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=98.41  E-value=1.6e-06  Score=66.48  Aligned_cols=47  Identities=11%  Similarity=0.126  Sum_probs=38.2

Q ss_pred             CCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+||+|+|+||.+...   +...+.++++++ ++++|+.+||+|-++|+.+
T Consensus        93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a  143 (231)
T cd03147          93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL  143 (231)
T ss_pred             hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence            4799999999976433   334567888885 7899999999999999886

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=98.41  E-value=3e-06  Score=59.52  Aligned_cols=89  Identities=18%  Similarity=0.076  Sum_probs=60.1

Q ss_pred             CeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc---CCc
Q 032797           25 NPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---QDS   84 (133)
Q Consensus        25 ~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~---~d~   84 (133)
                      +||+++-+.+...   ..+.+.|+..|+++.++..+..              +.++....+||.++++||.+..   .+.
T Consensus         2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~   81 (142)
T cd03132           2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPS   81 (142)
T ss_pred             CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccC
Confidence            4677664432222   2366788889999988754311              1112222258999999987643   234


Q ss_pred             hHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        85 ~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ....+++++. .+++|+.+||.|..+|+.+
T Consensus        82 ~~l~~~l~~~~~~~~~I~aic~G~~~La~a  111 (142)
T cd03132          82 GRALHFVTEAFKHGKPIGAVGEGSDLLEAA  111 (142)
T ss_pred             hHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence            5577888884 7899999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=98.37  E-value=2.3e-06  Score=62.83  Aligned_cols=91  Identities=13%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             CCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHccCCCCEEEECCCCCCcC-
Q 032797           24 KNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ-   82 (133)
Q Consensus        24 ~~~i~vid~~~~~---~~~i~~~l~~~G~~~~v~~~~~-----------------~~~~~l~~~~~DgvIl~GG~~~~~-   82 (133)
                      .++++++-+.+-.   .....+.|++.|.++++.....                 ...++....+||+++++||...+. 
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~   81 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY   81 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence            3566666432221   2245678999999877654321                 011112224899999999944433 


Q ss_pred             Cc--hHHHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797           83 DS--GISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        83 d~--~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~  114 (133)
                      ..  ....++++++ +.++||.+||.|-|+|+.+-
T Consensus        82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag  116 (188)
T COG0693          82 LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG  116 (188)
T ss_pred             ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence            22  4577888886 78999999999999998764

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=98.36  E-value=5.4e-06  Score=61.29  Aligned_cols=89  Identities=10%  Similarity=0.079  Sum_probs=57.7

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHccCCCCEEEECCCCCCcC
Q 032797           24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ   82 (133)
Q Consensus        24 ~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~-----------------~~~~~l~~~~~DgvIl~GG~~~~~   82 (133)
                      .+||+|+-. ++|.    ....+.|++.|+++.+.....                 .+.+++...++|.|+++||++.+.
T Consensus         2 ~~~~~il~~-~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~   80 (196)
T PRK11574          2 SASALVCLA-PGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE   80 (196)
T ss_pred             CceEEEEeC-CCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence            467777743 2332    235677888888877654210                 112233223699999999865332


Q ss_pred             ---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        83 ---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                         +...+.++++++ ++++++.+||.|..+|...
T Consensus        81 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~  115 (196)
T PRK11574         81 CFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP  115 (196)
T ss_pred             hhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence               334567888885 7899999999999976543

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=98.32  E-value=1.9e-06  Score=71.89  Aligned_cols=86  Identities=15%  Similarity=0.229  Sum_probs=57.2

Q ss_pred             CCeEEEEECCCCchH---HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-----hHHHHHHHHh-
Q 032797           24 KNPIIVIDNYDSFTY---NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL-   94 (133)
Q Consensus        24 ~~~i~vid~~~~~~~---~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-----~~~~~~i~~~-   94 (133)
                      +.||+|+-.. .|..   .=.+.|++.|+++..+++.  ..++++  ++|+|+|+||.....+.     ..+.+.|+++ 
T Consensus       244 ~~~Iava~d~-afnFy~~~~~~~L~~~g~~~~~~~~~--~d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~  318 (449)
T TIGR00379       244 YVRIAVAQDQ-AFNFYYQDNLDALTHNAAELVPFSPL--EDTELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFI  318 (449)
T ss_pred             CcEEEEEech-hhceeHHHHHHHHHHCCCEEEEECCc--cCCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3688888321 2222   2345688889988877542  112343  79999999986322211     1235667664 


Q ss_pred             CCCCCEEEEechHHHHHHHh
Q 032797           95 GPTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        95 ~~~~PvLGIClG~QlLa~a~  114 (133)
                      +++.|++|+|-|+|+|++.+
T Consensus       319 ~~G~pv~g~CgG~~~L~~~i  338 (449)
T TIGR00379       319 HQGLPIYGECGGLMYLSQSL  338 (449)
T ss_pred             HcCCCEEEEcHHHHHHHhhh
Confidence            78899999999999999987

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=98.32  E-value=1.4e-06  Score=65.79  Aligned_cols=88  Identities=13%  Similarity=0.133  Sum_probs=60.4

Q ss_pred             CCCCeEEEEECC----CCchHHHHHHHHhC-CCeEEEEeCCC-CC-HHHHccCCCCEEEECCCCCCcCCch------HHH
Q 032797           22 NNKNPIIVIDNY----DSFTYNLCQYMGEL-GYHFEVYRNDE-LT-VEELKRKNPRGVLISPGPGAPQDSG------ISL   88 (133)
Q Consensus        22 ~~~~~i~vid~~----~~~~~~i~~~l~~~-G~~~~v~~~~~-~~-~~~l~~~~~DgvIl~GG~~~~~d~~------~~~   88 (133)
                      ....+|++|-.-    +.|..++.+++++. |++++.+.... .. .+.+.  .+|+|+++||  +.....      .+.
T Consensus        29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG--~~~~~~~~l~~~~l~  104 (212)
T cd03146          29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL--EADVIYVGGG--NTFNLLAQWREHGLD  104 (212)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh--cCCEEEECCc--hHHHHHHHHHHcCHH
Confidence            456899999443    24455677888899 99888775321 11 23343  7999999886  433221      134


Q ss_pred             HHHHH-hCCCCCEEEEechHHHHHHH
Q 032797           89 QTVLE-LGPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        89 ~~i~~-~~~~~PvLGIClG~QlLa~a  113 (133)
                      +.|++ +++++|++|+|.|+|++...
T Consensus       105 ~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146         105 AILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             HHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            55665 47889999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=98.23  E-value=1.4e-06  Score=73.19  Aligned_cols=83  Identities=14%  Similarity=0.125  Sum_probs=50.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-----HHHHHHHHh-CCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-GPTV   98 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-----~~~~~i~~~-~~~~   98 (133)
                      .+|+|+.....+...=.+.|+..- .+...+.    .++++  ++|+|+|+||.....+..     .+.+.|+++ +++.
T Consensus       248 ~~Iav~~~~~~~nf~~~~~L~~~~-~~~f~~~----~~~l~--~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~  320 (475)
T TIGR00313       248 IRIGVVRLPRISNFTDFEPLRYEA-FVKFLDL----DDSLT--GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGG  320 (475)
T ss_pred             cEEEEEcCCcccCccChHHHhhCC-CeEEeCC----ccccc--cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCC
Confidence            789888632222222234555441 2222222    23454  789999999863222211     134567664 7899


Q ss_pred             CEEEEechHHHHHHHh
Q 032797           99 PLFGVCMGLQCIGEAF  114 (133)
Q Consensus        99 PvLGIClG~QlLa~a~  114 (133)
                      |++|||-|+|+|++.+
T Consensus       321 pvlgiCgG~q~Lg~~i  336 (475)
T TIGR00313       321 IVIGICGGYQMLGKEL  336 (475)
T ss_pred             cEEEEcHHHHHhhhhh
Confidence            9999999999999965

>PRK04155 chaperone protein HchA; Provisional

Probab=98.23  E-value=5.3e-06  Score=65.64  Aligned_cols=48  Identities=19%  Similarity=0.151  Sum_probs=37.5

Q ss_pred             cCCCCEEEECCCCCCcCC---chHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           66 RKNPRGVLISPGPGAPQD---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        66 ~~~~DgvIl~GG~~~~~d---~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ..+||+|+|+||.+...+   ...+.++++.+ ++++||.+||+|-++|..+
T Consensus       145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a  196 (287)
T PRK04155        145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA  196 (287)
T ss_pred             cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            358999999999775443   33466788875 8899999999999977663

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=98.22  E-value=8.5e-06  Score=62.56  Aligned_cols=47  Identities=19%  Similarity=0.117  Sum_probs=37.3

Q ss_pred             CCCCEEEECCCCCCcCC---chHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           67 KNPRGVLISPGPGAPQD---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~~d---~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+||+|+++||.+...+   ...+.++++++ ++++||-.||+|-++|..+
T Consensus        95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a  145 (232)
T cd03148          95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence            47999999999765443   34466788875 8899999999999987664

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.21  E-value=8.1e-06  Score=59.20  Aligned_cols=75  Identities=11%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             HHHHHHHhC-CCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCC-cCCchHHHHHHHHh-CCCCCEE
Q 032797           39 NLCQYMGEL-GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGA-PQDSGISLQTVLEL-GPTVPLF  101 (133)
Q Consensus        39 ~i~~~l~~~-G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~-~~d~~~~~~~i~~~-~~~~PvL  101 (133)
                      ...+.|++. ++++.++..+.              .+.++....++|.++|+||+.. ........++|+++ ++++++.
T Consensus        16 ~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~   95 (170)
T cd03140          16 YLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVA   95 (170)
T ss_pred             HHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEE
Confidence            345666665 67777664331              1233332236999999999652 22334567888885 7889999


Q ss_pred             EEechHHHHHHH
Q 032797          102 GVCMGLQCIGEA  113 (133)
Q Consensus       102 GIClG~QlLa~a  113 (133)
                      +||-|.++|+.+
T Consensus        96 aic~G~~~La~a  107 (170)
T cd03140          96 AICGATLALARA  107 (170)
T ss_pred             EEChHHHHHHHC
Confidence            999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=98.21  E-value=9.2e-06  Score=57.79  Aligned_cols=75  Identities=11%  Similarity=0.196  Sum_probs=53.2

Q ss_pred             HHHHHHHhCCCeEEEEeCCC---------------CCHHHHccCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCCCC
Q 032797           39 NLCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTVP   99 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~---------------~~~~~l~~~~~DgvIl~GG~~~~---~d~~~~~~~i~~~-~~~~P   99 (133)
                      .+.+.|+..|+++.++..+.               .+.++....+||.++++||++.+   .+.....++++++ +++++
T Consensus        16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~   95 (163)
T cd03135          16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKL   95 (163)
T ss_pred             HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCE
Confidence            45677888888887764321               11222222479999999997322   2345577888875 78999


Q ss_pred             EEEEechHHHHHHH
Q 032797          100 LFGVCMGLQCIGEA  113 (133)
Q Consensus       100 vLGIClG~QlLa~a  113 (133)
                      +.+||.|..+|+.+
T Consensus        96 i~~ic~g~~~La~a  109 (163)
T cd03135          96 IAAICAAPAVLAKA  109 (163)
T ss_pred             EEEEchhHHHHHHc
Confidence            99999999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>PHA03366 FGAM-synthase; Provisional

Probab=98.20  E-value=1.2e-05  Score=74.47  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCchH-----------
Q 032797           21 KNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------   86 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~~-----------   86 (133)
                      +...+||+|+-+.+.+ .....++|..+|+++..+...+...... -.+|++++++||..  +..+.+.           
T Consensus      1025 ~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~ 1103 (1304)
T PHA03366       1025 PDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPA 1103 (1304)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCCCcccccHHHHHHHHhhhchH
Confidence            4567899999776665 4568889999999988776533222221 13799999999965  2222221           


Q ss_pred             HHHHHHHh--CCCCCEEEEec-hHHHHHH
Q 032797           87 SLQTVLEL--GPTVPLFGVCM-GLQCIGE  112 (133)
Q Consensus        87 ~~~~i~~~--~~~~PvLGICl-G~QlLa~  112 (133)
                      ..+.++++  ..+.++||||- |+|+|+.
T Consensus      1104 ~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~ 1132 (1304)
T PHA03366       1104 VRDALLRFLNRPDTFSLGCGELGCQILFA 1132 (1304)
T ss_pred             HHHHHHHHHhCCCCeEEEeCcHHHHHHHH
Confidence            23555553  46999999998 9999987

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=98.18  E-value=1.3e-06  Score=63.09  Aligned_cols=48  Identities=19%  Similarity=0.285  Sum_probs=36.8

Q ss_pred             CCCEEEECCCCCCcCCch-----HHHHHHHHh-CCCCCEEEEechHHHHHHHhC
Q 032797           68 NPRGVLISPGPGAPQDSG-----ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (133)
Q Consensus        68 ~~DgvIl~GG~~~~~d~~-----~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G  115 (133)
                      ++|+|+|+||.-..++..     .+.+.|+++ ++++||+|||-|+|+|.+.+=
T Consensus         7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~   60 (158)
T PF07685_consen    7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII   60 (158)
T ss_pred             CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence            799999998854333222     245677774 789999999999999999774

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.14  E-value=1.6e-05  Score=73.22  Aligned_cols=89  Identities=17%  Similarity=0.203  Sum_probs=61.7

Q ss_pred             CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCH-HHHccCCCCEEEECCCCC--CcCCchH-----------
Q 032797           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV-EELKRKNPRGVLISPGPG--APQDSGI-----------   86 (133)
Q Consensus        22 ~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~-~~l~~~~~DgvIl~GG~~--~~~d~~~-----------   86 (133)
                      ...+||+|+-+.+.. .....++|+.+|+++..+...+... ..+  .+|+|++++||.+  ++...+.           
T Consensus       927 ~~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l--~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~ 1004 (1202)
T TIGR01739       927 DPRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFL--DTFSGLIIGGASGTLDSEVGARALAAALLRNQA 1004 (1202)
T ss_pred             CCCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCch--hheEEEEEcCcCCCCccchHHHHHHHHhhcchH
Confidence            345789999776655 4568889999999988776543221 223  3799999988864  3322221           


Q ss_pred             HHHHHHHh--CCCCCEEEEec-hHHHHHH
Q 032797           87 SLQTVLEL--GPTVPLFGVCM-GLQCIGE  112 (133)
Q Consensus        87 ~~~~i~~~--~~~~PvLGICl-G~QlLa~  112 (133)
                      ..+.++++  ..+.++||||- |+|+|+.
T Consensus      1005 ~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~ 1033 (1202)
T TIGR01739      1005 FLRDLLTFLNRPDTFSLGFGELGCQLLLA 1033 (1202)
T ss_pred             HHHHHHHHHhCCCceEEEeCcHHHHHHHH
Confidence            23445553  56999999998 9999987

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=98.10  E-value=1.3e-05  Score=60.83  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=38.5

Q ss_pred             CCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797           67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~  114 (133)
                      .+||+|+|+||++...   +.....++++++ ++++++.+||.|.++|+.+-
T Consensus        89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag  140 (221)
T cd03141          89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK  140 (221)
T ss_pred             hHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence            3799999999976432   344577888885 78999999999999999863

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=98.07  E-value=1.3e-05  Score=66.81  Aligned_cols=85  Identities=18%  Similarity=0.259  Sum_probs=53.6

Q ss_pred             CeEEEE-ECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCC
Q 032797           25 NPIIVI-DNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPT   97 (133)
Q Consensus        25 ~~i~vi-d~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~   97 (133)
                      .||+|- |---+| ...=.+.|++. +++..+.+-  ..++++  ++|+|+|+||.....+..    ...+.|+++ +++
T Consensus       234 ~~iavA~D~AF~FyY~enl~~L~~~-aelv~fSPl--~~~~lp--~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G  308 (433)
T PRK13896        234 PTVAVARDAAFCFRYPATIERLRER-ADVVTFSPV--AGDPLP--DCDGVYLPGGYPELHADALADSPALDELADRAADG  308 (433)
T ss_pred             CeEEEEEcCccceeCHHHHHHHHhc-CcEEEEcCC--CCCCCC--CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCC
Confidence            688887 321122 12233567777 766655441  223444  789999999874322210    123556664 789


Q ss_pred             CCEEEEechHHHHHHHh
Q 032797           98 VPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        98 ~PvLGIClG~QlLa~a~  114 (133)
                      +|++|||-|+|+|++.+
T Consensus       309 ~pi~aeCGG~q~L~~~i  325 (433)
T PRK13896        309 LPVLGECGGLMALAESL  325 (433)
T ss_pred             CcEEEEehHHHHhhccc
Confidence            99999999999999987

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=97.99  E-value=2.6e-05  Score=58.00  Aligned_cols=83  Identities=19%  Similarity=0.310  Sum_probs=55.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC----CchHHHHHHHH-hCCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTV   98 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~----d~~~~~~~i~~-~~~~~   98 (133)
                      |+|-|+-..+.+. .=.+.+++++ .++..++.    ++++.  ..||+||+||..+.-    ....+.+.+++ ..+++
T Consensus         1 m~IGVLalQG~v~-EH~~~l~~~~~~e~~~Vk~----~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~   73 (194)
T COG0311           1 MKIGVLALQGAVE-EHLEALEKAGGAEVVEVKR----PEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGL   73 (194)
T ss_pred             CeEEEEEecccHH-HHHHHHHhhcCCceEEEcC----HHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCC
Confidence            5677776544443 3345677774 77665543    56775  799999999964321    11113455665 47899


Q ss_pred             CEEEEechHHHHHHHh
Q 032797           99 PLFGVCMGLQCIGEAF  114 (133)
Q Consensus        99 PvLGIClG~QlLa~a~  114 (133)
                      |++|-|-|+-+||...
T Consensus        74 Pv~GTCAGlIlLakei   89 (194)
T COG0311          74 PVFGTCAGLILLAKEI   89 (194)
T ss_pred             ceEEechhhhhhhhhh
Confidence            9999999999999643

>TIGR01383 not_thiJ DJ-1 family protein

Probab=97.95  E-value=3.8e-05  Score=55.60  Aligned_cols=74  Identities=11%  Similarity=0.177  Sum_probs=50.2

Q ss_pred             HHHHHHhCCCeEEE--EeCCC---------------CCHHHHccCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCCC
Q 032797           40 LCQYMGELGYHFEV--YRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTV   98 (133)
Q Consensus        40 i~~~l~~~G~~~~v--~~~~~---------------~~~~~l~~~~~DgvIl~GG~~~~---~d~~~~~~~i~~~-~~~~   98 (133)
                      +.+.|+..|.++++  +..+.               .+.++....+||.++|+||...+   .+...+.++++++ .+++
T Consensus        18 ~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~   97 (179)
T TIGR01383        18 TVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGK   97 (179)
T ss_pred             HHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCC
Confidence            56678878876664  43220               11222222479999999986422   2344567888885 7899


Q ss_pred             CEEEEechHHHHHHH
Q 032797           99 PLFGVCMGLQCIGEA  113 (133)
Q Consensus        99 PvLGIClG~QlLa~a  113 (133)
                      ++.+||-|..+|+.+
T Consensus        98 ~i~~ic~G~~~La~a  112 (179)
T TIGR01383        98 LVAAICAAPAVLLAA  112 (179)
T ss_pred             EEEEEChhHHHHHhc
Confidence            999999999999986

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=97.92  E-value=3.1e-05  Score=64.98  Aligned_cols=84  Identities=19%  Similarity=0.260  Sum_probs=52.5

Q ss_pred             CCCeEEEEEC--CCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH-----HHHHHHH-
Q 032797           23 NKNPIIVIDN--YDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-   93 (133)
Q Consensus        23 ~~~~i~vid~--~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~-----~~~~i~~-   93 (133)
                      ...+|+|+..  ...|+  -.+.|+. .++.+.+++..    +++.  ++|.+||+|+.....|...     +.+.+.+ 
T Consensus       250 ~~i~Iav~~lp~isNFt--D~dpL~~~~~v~v~~v~~~----~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~  321 (486)
T COG1492         250 RAIRIAVIRLPRISNFT--DFDPLRAEPDVRVRFVKPG----SDLR--DADLVILPGSKNTIADLKILREGGMDEKILEY  321 (486)
T ss_pred             CceEEEEecCCCccccc--cchhhhcCCCeEEEEeccC----CCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHH
Confidence            4468888843  22232  1233443 47777777653    3454  5899999777554444322     2233444 


Q ss_pred             hCCCCCEEEEechHHHHHHHh
Q 032797           94 LGPTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        94 ~~~~~PvLGIClG~QlLa~a~  114 (133)
                      ...+.||+|||-|+|||...+
T Consensus       322 ~~~~~~viGICGG~QmLG~~i  342 (486)
T COG1492         322 ARKGGDVIGICGGYQMLGRRL  342 (486)
T ss_pred             HhCCCCEEEEcchHHhhhhhh
Confidence            466899999999999997754

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=97.87  E-value=4.9e-06  Score=59.05  Aligned_cols=54  Identities=22%  Similarity=0.436  Sum_probs=40.9

Q ss_pred             CHHHHccCCCCEEEECCCCCCcC----CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           60 TVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        60 ~~~~l~~~~~DgvIl~GG~~~~~----d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +.+++...+||+||++||.+.+.    +...+.++++++ ++++|+.+||.|-.+|+.+
T Consensus        29 ~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~   87 (147)
T PF01965_consen   29 TLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA   87 (147)
T ss_dssp             EGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred             cHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence            45666656899999999987332    335577888886 7899999999999999886

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.87  E-value=8e-05  Score=54.34  Aligned_cols=47  Identities=19%  Similarity=0.301  Sum_probs=38.3

Q ss_pred             CCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           67 KNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .++|.++++||....  .+...+.++++++ .+++++.+||-|.++|+.+
T Consensus        63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  112 (187)
T cd03137          63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA  112 (187)
T ss_pred             CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            379999999986643  2345577889885 7899999999999999986

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.87  E-value=3.2e-05  Score=53.44  Aligned_cols=52  Identities=15%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             CCCCEEEECCCCCCcCCc---hHHHHHHHH-hCCCCCEEEEechHHHHHHHhCCeee
Q 032797           67 KNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      .++|.+|++||.....-.   ..-.+.|++ .++++|+||||+|.-+. ..-||-..
T Consensus        43 ~~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a-~~~~G~~~   98 (114)
T cd03144          43 SKTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA-YFNGGPVF   98 (114)
T ss_pred             hCCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCccce-EEcCCeee
Confidence            379999998864422100   001456666 47889999999999776 44444333

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.86  E-value=8.8e-06  Score=60.61  Aligned_cols=69  Identities=20%  Similarity=0.356  Sum_probs=44.9

Q ss_pred             HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC----CchHHHHHHHHh-CCC-CCEEEEechHHHHHHH
Q 032797           40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPT-VPLFGVCMGLQCIGEA  113 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~----d~~~~~~~i~~~-~~~-~PvLGIClG~QlLa~a  113 (133)
                      =.+.|+++|.+...++.    .+++.  +.||+||+||-.+.-    +...+.+.|+++ ..+ +|+||.|-|+-+||..
T Consensus        11 H~~~l~~lg~~~~~Vr~----~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~   84 (188)
T PF01174_consen   11 HIRMLERLGAEVVEVRT----PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE   84 (188)
T ss_dssp             HHHHHHHTTSEEEEE-S----GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred             HHHHHHHcCCCeEEeCC----HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence            35678889998876654    46775  799999999954211    111245667764 444 9999999999999984


Q ss_pred             h
Q 032797          114 F  114 (133)
Q Consensus       114 ~  114 (133)
                      .
T Consensus        85 v   85 (188)
T PF01174_consen   85 V   85 (188)
T ss_dssp             E
T ss_pred             h
Confidence            3

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK11249 katE hydroperoxidase II; Provisional

Probab=97.85  E-value=6.5e-05  Score=66.21  Aligned_cols=92  Identities=12%  Similarity=0.039  Sum_probs=63.1

Q ss_pred             CCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCCcC--
Q 032797           22 NNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAPQ--   82 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~~~--   82 (133)
                      ..+++|+||-..+...   ..+.+.|++.|+.+.++....              .+.++.+...||+|+|+||..++.  
T Consensus       595 ~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L  674 (752)
T PRK11249        595 IKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADL  674 (752)
T ss_pred             ccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHH
Confidence            4567888885432222   246778888999988875421              011122223699999999865432  


Q ss_pred             -CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           83 -DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        83 -d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                       .....+.+|+++ .+.++|.+||-|.++|+.+
T Consensus       675 ~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA  707 (752)
T PRK11249        675 ADNGDARYYLLEAYKHLKPIALAGDARKLKAAL  707 (752)
T ss_pred             hhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence             344577888884 8899999999999999974

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=97.69  E-value=0.00012  Score=58.21  Aligned_cols=113  Identities=12%  Similarity=0.117  Sum_probs=54.4

Q ss_pred             cccCC-CCCeEEEEECCCCchH---HHHHHHHhCCCeEE--EEeCCC---------------CCHHHHccCCCCEEEECC
Q 032797           18 KKSKN-NKNPIIVIDNYDSFTY---NLCQYMGELGYHFE--VYRNDE---------------LTVEELKRKNPRGVLISP   76 (133)
Q Consensus        18 ~~~~~-~~~~i~vid~~~~~~~---~i~~~l~~~G~~~~--v~~~~~---------------~~~~~l~~~~~DgvIl~G   76 (133)
                      ++.|. ...+|+||+.-..-..   -+.+.|.....+++  .+....               .+.+++....|||+||+|
T Consensus        27 a~~qdirpL~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITG  106 (298)
T PF04204_consen   27 AMHQDIRPLKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITG  106 (298)
T ss_dssp             ---TTS--EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE--
T ss_pred             cccccccceEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeC
Confidence            44553 3368999987433222   24444444444443  332211               123445556899999999


Q ss_pred             CCCCcCC---chH---HHHHHHHh-CCCCCEEEEechHHH-HHHHhCCeeeeccCCcceeee
Q 032797           77 GPGAPQD---SGI---SLQTVLEL-GPTVPLFGVCMGLQC-IGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus        77 G~~~~~d---~~~---~~~~i~~~-~~~~PvLGIClG~Ql-La~a~GG~v~~~~~~~~g~~~  130 (133)
                      .|-.-.+   .+.   +.+++... .+-.+.|.||+|.|. |...+|-.-...++.-+|...
T Consensus       107 APvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~  168 (298)
T PF04204_consen  107 APVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFE  168 (298)
T ss_dssp             -TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEE
T ss_pred             CCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceecee
Confidence            9864322   222   22233222 456899999999999 888899887777776666543

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>TIGR01001 metA homoserine O-succinyltransferase

Probab=97.61  E-value=0.00051  Score=54.62  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=67.6

Q ss_pred             cccCC-CCCeEEEEECCCCc---hHHHHHHHHhCCCe--EEEEeCCC---------------CCHHHHccCCCCEEEECC
Q 032797           18 KKSKN-NKNPIIVIDNYDSF---TYNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISP   76 (133)
Q Consensus        18 ~~~~~-~~~~i~vid~~~~~---~~~i~~~l~~~G~~--~~v~~~~~---------------~~~~~l~~~~~DgvIl~G   76 (133)
                      +.+|. .+.+|+|++.-..-   ...+.+.|.....+  ++.+....               .+.+++....+||+||+|
T Consensus        28 a~~qdirpL~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITG  107 (300)
T TIGR01001        28 ASHQDIRPLEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITG  107 (300)
T ss_pred             hccccccceeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcC
Confidence            34443 34789999764322   12366666554444  44433211               234556567899999999


Q ss_pred             CCCC--cC-CchHH---HHHHHHh-CCCCCEEEEechHHH-HHHHhCCeeeeccCCcceee
Q 032797           77 GPGA--PQ-DSGIS---LQTVLEL-GPTVPLFGVCMGLQC-IGEAFGDCAFSAWCHAWKKF  129 (133)
Q Consensus        77 G~~~--~~-d~~~~---~~~i~~~-~~~~PvLGIClG~Ql-La~a~GG~v~~~~~~~~g~~  129 (133)
                      .|-.  ++ +.+.+   .+++.-. .+-...|.||+|.|. |...+|-.=...++.-+|..
T Consensus       108 APvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf  168 (300)
T TIGR01001       108 APVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVY  168 (300)
T ss_pred             CCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEEee
Confidence            9863  22 22222   2233222 467899999999999 67777777667777777643

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=97.60  E-value=0.00048  Score=49.92  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=37.0

Q ss_pred             CCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        68 ~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .||.++++||++..  .......+++++. ++++++.+||-|..+|+.+
T Consensus        62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a  110 (183)
T cd03139          62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA  110 (183)
T ss_pred             CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence            79999999996532  2344577888885 7899999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=97.56  E-value=0.00015  Score=55.82  Aligned_cols=91  Identities=15%  Similarity=0.229  Sum_probs=59.9

Q ss_pred             CCCeEEEEECC------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC----CchHHHHHHH
Q 032797           23 NKNPIIVIDNY------DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVL   92 (133)
Q Consensus        23 ~~~~i~vid~~------~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~----d~~~~~~~i~   92 (133)
                      .+++|++|-.-      +.|...+.+.+++.|+++..++..+...+.+.  ..|+|+++||.....    ....+.+.|+
T Consensus        30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl~~~l~  107 (233)
T PRK05282         30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGLLAPIR  107 (233)
T ss_pred             CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh--cCCEEEECCccHHHHHHHHHHCCcHHHHH
Confidence            46789999432      23455677788899999877754321122243  799999999843111    1111345666


Q ss_pred             H-hCCCCCEEEEechHHHHHHHhC
Q 032797           93 E-LGPTVPLFGVCMGLQCIGEAFG  115 (133)
Q Consensus        93 ~-~~~~~PvLGIClG~QlLa~a~G  115 (133)
                      + +++++|+.|.|-|+-+++...+
T Consensus       108 ~~~~~G~~~~G~SAGAii~~~~i~  131 (233)
T PRK05282        108 EAVKNGTPYIGWSAGANVAGPTIR  131 (233)
T ss_pred             HHHHCCCEEEEECHHHHhhhccce
Confidence            5 5788999999999988877554

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=97.49  E-value=0.00043  Score=53.18  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=49.4

Q ss_pred             HHHHHHhCCCeEEEEeCCC---------------CCHHHHccCCCCEEEECCC-CCCcC--CchHHHHHHHHh-CCCCCE
Q 032797           40 LCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPG-PGAPQ--DSGISLQTVLEL-GPTVPL  100 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~~---------------~~~~~l~~~~~DgvIl~GG-~~~~~--d~~~~~~~i~~~-~~~~Pv  100 (133)
                      ..+.|++.|+++++...+.               ....|.....||.+||+|| ++.-.  +.....+++++. +.++++
T Consensus        24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLI  103 (247)
T KOG2764|consen   24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLI  103 (247)
T ss_pred             eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeE
Confidence            3678899999988764321               1122222358999999999 76543  334456788875 789999


Q ss_pred             EEEechHHHHH
Q 032797          101 FGVCMGLQCIG  111 (133)
Q Consensus       101 LGIClG~QlLa  111 (133)
                      ..||.|--++.
T Consensus       104 aaICaap~~al  114 (247)
T KOG2764|consen  104 AAICAAPLTAL  114 (247)
T ss_pred             EEeecchHHHH
Confidence            99999864443

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=97.46  E-value=0.00012  Score=56.00  Aligned_cols=72  Identities=14%  Similarity=0.205  Sum_probs=47.5

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-----Cc-hHHHHHHHH-hCCCCCEEEEechHHHHH
Q 032797           39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DS-GISLQTVLE-LGPTVPLFGVCMGLQCIG  111 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-----d~-~~~~~~i~~-~~~~~PvLGIClG~QlLa  111 (133)
                      .+.+..+.+|+.+++++....  +..+...+|.+++.||.. ..     +. ..-.+-++. +++++|+|.||-|.|+|.
T Consensus        25 ~Lr~ra~~rgi~v~i~~vsl~--d~~~~~~~Dl~~~GGgqD-~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG  101 (250)
T COG3442          25 VLRQRAEKRGIKVEIVEVSLT--DTFPDDSYDLYFLGGGQD-YEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLG  101 (250)
T ss_pred             eehHHHHhcCCceEEEEeecC--CCCCcccccEEEecCchH-HHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhcc
Confidence            356777889999998876422  223334799888866632 11     11 111244555 488999999999999998


Q ss_pred             HH
Q 032797          112 EA  113 (133)
Q Consensus       112 ~a  113 (133)
                      +.
T Consensus       102 ~y  103 (250)
T COG3442         102 QY  103 (250)
T ss_pred             ce
Confidence            74

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.28  E-value=0.00056  Score=50.26  Aligned_cols=46  Identities=20%  Similarity=0.302  Sum_probs=36.8

Q ss_pred             CCCEEEECCCCCCcC-----CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           68 NPRGVLISPGPGAPQ-----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        68 ~~DgvIl~GG~~~~~-----d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +||.|+|+||.+...     ....+.+++++. ++++++.+||-|.++|+.+
T Consensus        69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  120 (195)
T cd03138          69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA  120 (195)
T ss_pred             CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence            799999999865432     334567888875 7899999999999999874

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=97.24  E-value=0.0019  Score=47.75  Aligned_cols=95  Identities=14%  Similarity=0.241  Sum_probs=57.0

Q ss_pred             cccCCCCCeE-EEEECCCCchH---HHHHHHHhC--CCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC----CchHH
Q 032797           18 KKSKNNKNPI-IVIDNYDSFTY---NLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGIS   87 (133)
Q Consensus        18 ~~~~~~~~~i-~vid~~~~~~~---~i~~~l~~~--G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~----d~~~~   87 (133)
                      +.+.++.+.| -|+-..+.|..   -+.+.+-+.  ++...+.+.  .+.+|+.  .+|++||+||....-    ....+
T Consensus         4 asM~GKtn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL   79 (226)
T KOG3210|consen    4 ASMTGKTNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGL   79 (226)
T ss_pred             ccccCCcceEEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhh
Confidence            3444444443 45555455533   244455554  556666665  4677775  799999999965321    11113


Q ss_pred             HHHHHHh--CCCCCEEEEechHHHHHHHhCC
Q 032797           88 LQTVLEL--GPTVPLFGVCMGLQCIGEAFGD  116 (133)
Q Consensus        88 ~~~i~~~--~~~~PvLGIClG~QlLa~a~GG  116 (133)
                      .+-+.++  +..+|++|-|-||-.|..-+-+
T Consensus        80 ~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~n  110 (226)
T KOG3210|consen   80 YDDLYAFVHNPSKVTWGTCAGMIYLSQQLSN  110 (226)
T ss_pred             HHHHHHHhcCCCccceeechhhhhhhhhhcC
Confidence            3444443  4559999999999999775544

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=97.15  E-value=0.004  Score=49.37  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=36.3

Q ss_pred             CCCCEEEECCCCCCc-CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           67 KNPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~-~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .++|.||++||.+.. .....+.++|++. .+++++.+||-|..+|+.+
T Consensus        74 ~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  122 (322)
T PRK09393         74 DRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA  122 (322)
T ss_pred             CCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence            379999998885422 2344567888885 6889999999999999874

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.06  E-value=0.0024  Score=53.23  Aligned_cols=96  Identities=17%  Similarity=0.252  Sum_probs=63.9

Q ss_pred             ccccccCCCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-----CchH
Q 032797           15 LDDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGI   86 (133)
Q Consensus        15 ~~~~~~~~~~~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-----d~~~   86 (133)
                      .++........||+|..- ..|.   ..-.+.|++.|++++.+.+-  .-++++ .+.|++.|+||.-..+     +...
T Consensus       236 ~~~~~~~~~~~rIAVA~D-~AF~FyY~~nl~~Lr~~GAelv~FSPL--~D~~lP-~~~D~vYlgGGYPElfA~~L~~n~~  311 (451)
T COG1797         236 PEPERGNPLGVRIAVARD-AAFNFYYPENLELLREAGAELVFFSPL--ADEELP-PDVDAVYLGGGYPELFAEELSANES  311 (451)
T ss_pred             ccccccCCcCceEEEEec-chhccccHHHHHHHHHCCCEEEEeCCc--CCCCCC-CCCCEEEeCCCChHHHHHHHhhCHH
Confidence            333444455578988831 1332   23456789999999877652  123444 3699999999853222     2223


Q ss_pred             HHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797           87 SLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        87 ~~~~i~~~-~~~~PvLGIClG~QlLa~a~  114 (133)
                      .++.|+++ +.++|++|=|-|+--|++.+
T Consensus       312 ~~~~i~~~~~~G~piyaECGGlMYL~~~l  340 (451)
T COG1797         312 MRRAIKAFAAAGKPIYAECGGLMYLGESL  340 (451)
T ss_pred             HHHHHHHHHHcCCceEEecccceeehhhe
Confidence            56778775 78999999999999888766

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=96.91  E-value=0.0013  Score=47.13  Aligned_cols=47  Identities=19%  Similarity=0.300  Sum_probs=36.6

Q ss_pred             CCCCEEEECCCCC--CcCCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           67 KNPRGVLISPGPG--APQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        67 ~~~DgvIl~GG~~--~~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .++|.+|++||+.  .......+.+++++. .+++++.+||-|..+|+++
T Consensus        60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  109 (166)
T PF13278_consen   60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA  109 (166)
T ss_dssp             SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred             ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence            4799999999987  223345567888775 7889999999999999996

...

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=96.90  E-value=0.0021  Score=46.87  Aligned_cols=46  Identities=20%  Similarity=0.111  Sum_probs=36.9

Q ss_pred             CCCEEEECCCCCCc-CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           68 NPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        68 ~~DgvIl~GG~~~~-~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ++|.|+++||.+.. .......+++++. ++++.+.+||-|..+|+.+
T Consensus        64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a  111 (185)
T cd03136          64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA  111 (185)
T ss_pred             CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            79999999986533 2344567888885 7889999999999999874

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]

Probab=96.79  E-value=0.0037  Score=48.78  Aligned_cols=75  Identities=17%  Similarity=0.248  Sum_probs=48.9

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCCCcCCchHHHHH-----HHHh--CCCCCEEEEechHHH
Q 032797           39 NLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQT-----VLEL--GPTVPLFGVCMGLQC  109 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~~~~d~~~~~~~-----i~~~--~~~~PvLGIClG~Ql  109 (133)
                      ++++.++..|+.+..+.+++ +.+.+.  -+-..|||++||-..-.|.-+..+.     +.+.  ..--||.|||+|+.+
T Consensus        81 SYVK~aEsgGARViPli~ne-pEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~  159 (340)
T KOG1559|consen   81 SYVKLAESGGARVIPLIYNE-PEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFEL  159 (340)
T ss_pred             HHHHHHHcCCceEEEEecCC-cHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHH
Confidence            46777777899988777763 333332  1368999999994333343333222     2232  357899999999999


Q ss_pred             HHHHh
Q 032797          110 IGEAF  114 (133)
Q Consensus       110 La~a~  114 (133)
                      |..-.
T Consensus       160 lsmiI  164 (340)
T KOG1559|consen  160 LSMII  164 (340)
T ss_pred             HHHHH
Confidence            87643

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=96.77  E-value=0.0063  Score=45.57  Aligned_cols=91  Identities=13%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             CCCeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCCC-CCHHHHc--cCCCCEEEECCCCCCcC----CchHHHHHH
Q 032797           23 NKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE-LTVEELK--RKNPRGVLISPGPGAPQ----DSGISLQTV   91 (133)
Q Consensus        23 ~~~~i~vid~~~----~~~~~i~~~l~~~G~~~~v~~~~~-~~~~~l~--~~~~DgvIl~GG~~~~~----d~~~~~~~i   91 (133)
                      ...+|++|....    .+...+.+.+++.|++...+.... .+.++..  -...|+|+++||...-.    ......+.|
T Consensus        28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i  107 (210)
T cd03129          28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI  107 (210)
T ss_pred             CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence            578999996543    345567788899999877655321 1111211  13799999999732110    011123344


Q ss_pred             HH-hCCCCCEEEEechHHHHHHH
Q 032797           92 LE-LGPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        92 ~~-~~~~~PvLGIClG~QlLa~a  113 (133)
                      ++ +.++.|+.|.|-|+.++...
T Consensus       108 ~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129         108 LKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             HHHHHcCCeEEEcCHHHHHhhhc
Confidence            43 46899999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]

Probab=95.85  E-value=0.06  Score=42.32  Aligned_cols=109  Identities=18%  Similarity=0.266  Sum_probs=58.6

Q ss_pred             cccccCCCC-CeEEEEECCCCchH---HHHHHHHh--CCCeEEEEeCCC---------------CCHHHHccCCCCEEEE
Q 032797           16 DDKKSKNNK-NPIIVIDNYDSFTY---NLCQYMGE--LGYHFEVYRNDE---------------LTVEELKRKNPRGVLI   74 (133)
Q Consensus        16 ~~~~~~~~~-~~i~vid~~~~~~~---~i~~~l~~--~G~~~~v~~~~~---------------~~~~~l~~~~~DgvIl   74 (133)
                      ++++.|... .+|+|++.-..-..   -+.+.|..  +.++++.++.+.               .+.+++....|||+||
T Consensus        26 ~rA~~QdIRPL~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~Ii  105 (307)
T COG1897          26 SRAKHQDIRPLKILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLII  105 (307)
T ss_pred             hhhhhcCCccceeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEE
Confidence            345666444 57888876332111   24444433  234444443321               2355666678999999


Q ss_pred             CCCCCCcC---CchHH--HHHHHHh--CCCCCEEEEechHHHHHHHh-CCeeeeccCC
Q 032797           75 SPGPGAPQ---DSGIS--LQTVLEL--GPTVPLFGVCMGLQCIGEAF-GDCAFSAWCH  124 (133)
Q Consensus        75 ~GG~~~~~---d~~~~--~~~i~~~--~~~~PvLGIClG~QlLa~a~-GG~v~~~~~~  124 (133)
                      +|.|-.-.   +...+  +..|.++  .+-.-.|-||.|.|.--.++ |-.=...++.
T Consensus       106 TGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~K  163 (307)
T COG1897         106 TGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEK  163 (307)
T ss_pred             eCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchh
Confidence            99986422   22222  1222222  34457799999999865544 4443344443

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.83  E-value=0.13  Score=41.01  Aligned_cols=76  Identities=18%  Similarity=0.239  Sum_probs=48.8

Q ss_pred             CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCC---------------CHHHHccCCCCEEEECCCCCCcCCc
Q 032797           25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGAPQDS   84 (133)
Q Consensus        25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~---------------~~~~l~~~~~DgvIl~GG~~~~~d~   84 (133)
                      ++|+++-+.+.-     ...+.++|++.|+++.+.+....               +..++. ..+|.+|..||-|     
T Consensus         6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG-----   79 (296)
T PRK04539          6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDG-----   79 (296)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcH-----
Confidence            458888654332     23466788889998876532100               011221 2589999999944     


Q ss_pred             hHHHHHHHHh-CCCCCEEEEechH
Q 032797           85 GISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        85 ~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                       .++...+.+ ..++|+|||=.|.
T Consensus        80 -T~L~aa~~~~~~~~PilGIN~G~  102 (296)
T PRK04539         80 -TFLSVAREIAPRAVPIIGINQGH  102 (296)
T ss_pred             -HHHHHHHHhcccCCCEEEEecCC
Confidence             455666665 5689999999987

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=95.53  E-value=0.071  Score=40.75  Aligned_cols=83  Identities=12%  Similarity=0.159  Sum_probs=55.3

Q ss_pred             CCeEEEEEC------CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCch------HHHH
Q 032797           24 KNPIIVIDN------YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG------ISLQ   89 (133)
Q Consensus        24 ~~~i~vid~------~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~------~~~~   89 (133)
                      +.+|+.|-.      .+.|.....++|++.|+.+.-++....+.+++..  .+.|.|.++||.  -...-      -..+
T Consensus        32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN--TF~LL~~lke~gld~  109 (224)
T COG3340          32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGN--TFNLLQELKETGLDD  109 (224)
T ss_pred             CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCch--HHHHHHHHHHhCcHH
Confidence            458999822      2234555677899999999877765455666653  368999998873  11111      1356


Q ss_pred             HHHH-hCCCCCEEEEechHH
Q 032797           90 TVLE-LGPTVPLFGVCMGLQ  108 (133)
Q Consensus        90 ~i~~-~~~~~PvLGIClG~Q  108 (133)
                      .|++ +++++|..|+--|.-
T Consensus       110 iIr~~vk~G~~YiG~SAGA~  129 (224)
T COG3340         110 IIRERVKAGTPYIGWSAGAN  129 (224)
T ss_pred             HHHHHHHcCCceEEeccCce
Confidence            6776 589999999876653

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.43  E-value=0.14  Score=40.69  Aligned_cols=76  Identities=20%  Similarity=0.195  Sum_probs=48.6

Q ss_pred             CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC----------------CHHHHccCCCCEEEECCCCCCcCC
Q 032797           25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL----------------TVEELKRKNPRGVLISPGPGAPQD   83 (133)
Q Consensus        25 ~~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~~----------------~~~~l~~~~~DgvIl~GG~~~~~d   83 (133)
                      |+|.++-+.+. .    ...+.++|++.|+++.+.+....                +.+++. ..+|.+|..||-|    
T Consensus         1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDG----   75 (292)
T PRK01911          1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDG----   75 (292)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcH----
Confidence            57888855432 1    23466788889998876432100                011222 2589999999944    


Q ss_pred             chHHHHHHHHh-CCCCCEEEEechH
Q 032797           84 SGISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        84 ~~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                        .++...+.+ ..++|+|||=.|.
T Consensus        76 --T~L~aa~~~~~~~~PilGIN~G~   98 (292)
T PRK01911         76 --TFLRTATYVGNSNIPILGINTGR   98 (292)
T ss_pred             --HHHHHHHHhcCCCCCEEEEecCC
Confidence              455666665 5689999999986

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.42  E-value=0.12  Score=40.77  Aligned_cols=77  Identities=18%  Similarity=0.296  Sum_probs=49.2

Q ss_pred             CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCC--CC-H-----HHHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797           25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDE--LT-V-----EELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (133)
Q Consensus        25 ~~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~--~~-~-----~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i   91 (133)
                      |||.|+-+.+. .    ...+.++|++.|.++.+.+...  .. .     .+....++|.+|..||-|      .+.+.+
T Consensus         1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------TlL~a~   74 (277)
T PRK03708          1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------TILRIE   74 (277)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH------HHHHHH
Confidence            67888866433 2    2346778888999888753210  00 0     112223689999999954      345566


Q ss_pred             HHhCCCCCEEEEechH
Q 032797           92 LELGPTVPLFGVCMGL  107 (133)
Q Consensus        92 ~~~~~~~PvLGIClG~  107 (133)
                      +....++|++||=.|.
T Consensus        75 ~~~~~~~pi~gIn~G~   90 (277)
T PRK03708         75 HKTKKDIPILGINMGT   90 (277)
T ss_pred             HhcCCCCeEEEEeCCC
Confidence            6336689999999987

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=95.38  E-value=0.21  Score=36.58  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=45.8

Q ss_pred             CeEEEE-ECCCCchHHHHHHHHh-C--CCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHh---CC
Q 032797           25 NPIIVI-DNYDSFTYNLCQYMGE-L--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL---GP   96 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~~~l~~-~--G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~---~~   96 (133)
                      |+++|+ ....+.|..+.+++.+ .  |.++++++..+....++.  +||.||+ |+|-... -...+.+++++.   -+
T Consensus         1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l~--~yD~vIl-Gspi~~G~~~~~~~~fl~~~~~~l~   77 (177)
T PRK11104          1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDLS--DYDRVVI-GASIRYGHFHSALYKFVKKHATQLN   77 (177)
T ss_pred             CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCHH--HCCEEEE-ECccccCCcCHHHHHHHHHHHHHhC
Confidence            456555 5555777777666543 1  667887776433223343  7999988 5443211 123344555442   35


Q ss_pred             CCCEEEEechH
Q 032797           97 TVPLFGVCMGL  107 (133)
Q Consensus        97 ~~PvLGIClG~  107 (133)
                      ++|+.-.|-|+
T Consensus        78 ~K~v~~F~v~l   88 (177)
T PRK11104         78 QMPSAFFSVNL   88 (177)
T ss_pred             CCeEEEEEech
Confidence            78888777773

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional

Probab=95.35  E-value=0.25  Score=39.23  Aligned_cols=76  Identities=22%  Similarity=0.345  Sum_probs=49.1

Q ss_pred             CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCC----------CCHHHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797           25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (133)
Q Consensus        25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~----------~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~   89 (133)
                      ++|.++-+.+.-     ...+.++|++.|+++.+.....          .+.+++. ..+|.+|..||-|      .+.+
T Consensus         6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDG------t~l~   78 (291)
T PRK02155          6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIG-ARADLAVVLGGDG------TMLG   78 (291)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhc-cCCCEEEEECCcH------HHHH
Confidence            458888654332     2346778888898876643210          0112222 3689999999844      4566


Q ss_pred             HHHHh-CCCCCEEEEechH
Q 032797           90 TVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        90 ~i~~~-~~~~PvLGIClG~  107 (133)
                      .++.+ ..++|+|||=.|.
T Consensus        79 ~~~~~~~~~~pilGIn~G~   97 (291)
T PRK02155         79 IGRQLAPYGVPLIGINHGR   97 (291)
T ss_pred             HHHHhcCCCCCEEEEcCCC
Confidence            77765 5789999999987

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=95.31  E-value=0.055  Score=44.43  Aligned_cols=85  Identities=14%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             CeEEEEECCCCchHH---HHHHHHh-CCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCCCCcCCc---hHHHHHHHH
Q 032797           25 NPIIVIDNYDSFTYN---LCQYMGE-LGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDS---GISLQTVLE   93 (133)
Q Consensus        25 ~~i~vid~~~~~~~~---i~~~l~~-~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~~~~~d~---~~~~~~i~~   93 (133)
                      |+|+|-.-.+.-...   ..+.|++ ..-...+.+.+   .+.+.    ...++.+|++||...++-.   +.-.+.||+
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~---~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~   77 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVT---ADELLNEPWQSKCALLVMPGGADLPYCRSLNGEGNRRIRQ   77 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeC---HHHhhcCccccCCcEEEECCCcchHHHHhhChHHHHHHHH
Confidence            577777543333333   3445554 22233333332   22331    1368999999998766532   223567888


Q ss_pred             h-CCCCCEEEEechHHHHHH
Q 032797           94 L-GPTVPLFGVCMGLQCIGE  112 (133)
Q Consensus        94 ~-~~~~PvLGIClG~QlLa~  112 (133)
                      + .++.-.||||-|.-.-..
T Consensus        78 fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   78 FVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             HHHcCCcEEEECcchhhhcc
Confidence            5 778999999999876654

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=95.11  E-value=0.076  Score=48.14  Aligned_cols=91  Identities=11%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             CCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCch-----------HH
Q 032797           22 NNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG-----------IS   87 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~-----------~~   87 (133)
                      .+.+||+||--.+.+. ..+..++..+|+++.=+.-.+.-.....-.+|-|++++||..  ++....           ..
T Consensus      1056 s~~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v 1135 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESV 1135 (1320)
T ss_pred             cCCCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhH
Confidence            3456999996555543 457778888998764332211111111113799999999964  222111           11


Q ss_pred             HHHHHHh--CCCCCEEEEechHHHHHH
Q 032797           88 LQTVLEL--GPTVPLFGVCMGLQCIGE  112 (133)
Q Consensus        88 ~~~i~~~--~~~~PvLGIClG~QlLa~  112 (133)
                      .....++  ..+.=-||||.|.|+|+.
T Consensus      1136 ~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1136 RSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred             HHHHHHHhcCCCceeeecccHhHHHHH
Confidence            2222232  356677999999999987

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.91  E-value=0.28  Score=39.32  Aligned_cols=76  Identities=17%  Similarity=0.299  Sum_probs=48.5

Q ss_pred             CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCC------------------C-HHHHccCCCCEEEECCCCCC
Q 032797           25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDEL------------------T-VEELKRKNPRGVLISPGPGA   80 (133)
Q Consensus        25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~------------------~-~~~l~~~~~DgvIl~GG~~~   80 (133)
                      ++|+++-+.+.-     ...+.++|++.|+++.+......                  + .+++ ...+|.+|..||-| 
T Consensus         6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG-   83 (306)
T PRK03372          6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGDG-   83 (306)
T ss_pred             cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCCH-
Confidence            458888664332     23467788889998876542100                  0 0111 12589999999944 


Q ss_pred             cCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797           81 PQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        81 ~~d~~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                           .++...+.+ ..++|+|||=.|.
T Consensus        84 -----T~L~aar~~~~~~~PilGIN~G~  106 (306)
T PRK03372         84 -----TILRAAELARAADVPVLGVNLGH  106 (306)
T ss_pred             -----HHHHHHHHhccCCCcEEEEecCC
Confidence                 455666664 6789999999884

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.84  E-value=0.39  Score=38.15  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=48.5

Q ss_pred             CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCC--C--------CHHHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797           25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE--L--------TVEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (133)
Q Consensus        25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~--~--------~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~   89 (133)
                      ++|.++-+.+.-     ...+.++|++.|+++.+.+...  .        +.+++. .++|.+|..||-|      .++.
T Consensus         6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~lGGDG------T~L~   78 (292)
T PRK03378          6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAIVVGGDG------NMLG   78 (292)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcC-CCCCEEEEECCcH------HHHH
Confidence            458888654332     2346678888998887643210  0        011221 2589999999944      4556


Q ss_pred             HHHHh-CCCCCEEEEechH
Q 032797           90 TVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        90 ~i~~~-~~~~PvLGIClG~  107 (133)
                      ..+.+ ..++|+|||-.|.
T Consensus        79 aa~~~~~~~~Pilgin~G~   97 (292)
T PRK03378         79 AARVLARYDIKVIGINRGN   97 (292)
T ss_pred             HHHHhcCCCCeEEEEECCC
Confidence            66665 4589999999998

>cd00886 MogA_MoaB MogA_MoaB family

Probab=94.50  E-value=0.56  Score=33.41  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=30.3

Q ss_pred             CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cC--CCCEEEECCCCC
Q 032797           33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RK--NPRGVLISPGPG   79 (133)
Q Consensus        33 ~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~--~~DgvIl~GG~~   79 (133)
                      +|++...+.+.|++.|+++.....-..+.+++.      ..  .+|.||.+||.+
T Consensus        18 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s   72 (152)
T cd00886          18 EDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG   72 (152)
T ss_pred             ccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            456666788899999998765432111233221      12  699999999965

Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.

>TIGR02069 cyanophycinase cyanophycinase

Probab=94.32  E-value=0.17  Score=39.25  Aligned_cols=93  Identities=13%  Similarity=0.197  Sum_probs=57.3

Q ss_pred             CCCCCeEEEEECCCC----chHHHHHHHHhCCCe-EEEEeCCCC----CHHHHc-cCCCCEEEECCCCCCc----CCchH
Q 032797           21 KNNKNPIIVIDNYDS----FTYNLCQYMGELGYH-FEVYRNDEL----TVEELK-RKNPRGVLISPGPGAP----QDSGI   86 (133)
Q Consensus        21 ~~~~~~i~vid~~~~----~~~~i~~~l~~~G~~-~~v~~~~~~----~~~~l~-~~~~DgvIl~GG~~~~----~d~~~   86 (133)
                      .....||++|-.-+.    +...+.+.+++.|++ +.++.....    +.+... -...|+|+++||...-    .....
T Consensus        25 g~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~  104 (250)
T TIGR02069        25 GGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTP  104 (250)
T ss_pred             CCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCc
Confidence            345579999954332    233566778889984 565554211    111111 1379999999984311    11122


Q ss_pred             HHHHHHH-hCCCCCEEEEechHHHHHHH
Q 032797           87 SLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        87 ~~~~i~~-~~~~~PvLGIClG~QlLa~a  113 (133)
                      +.+.|++ +.++.|+.|.--|.-+|+..
T Consensus       105 l~~~l~~~~~~G~vi~G~SAGA~i~~~~  132 (250)
T TIGR02069       105 LLDRLRKRVHEGIILGGTSAGAAVMSDT  132 (250)
T ss_pred             HHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence            3456765 57789999999999988653

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=94.01  E-value=0.36  Score=36.45  Aligned_cols=92  Identities=16%  Similarity=0.185  Sum_probs=57.7

Q ss_pred             CCCCeEEEEECCC----CchHHHHHHHHhCCCe-EEEEeCCC----CCHHHHc-cCCCCEEEECCCCCCcC----CchHH
Q 032797           22 NNKNPIIVIDNYD----SFTYNLCQYMGELGYH-FEVYRNDE----LTVEELK-RKNPRGVLISPGPGAPQ----DSGIS   87 (133)
Q Consensus        22 ~~~~~i~vid~~~----~~~~~i~~~l~~~G~~-~~v~~~~~----~~~~~l~-~~~~DgvIl~GG~~~~~----d~~~~   87 (133)
                      ..+.+|++|..-.    .+...+.+++++.|+. ++++..+.    .+.+... -.+.|+|+++||...-.    ....+
T Consensus        27 ~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l  106 (217)
T cd03145          27 GAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL  106 (217)
T ss_pred             CCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChH
Confidence            3568999997643    3455577788888985 44443321    1111111 13799999999843111    11123


Q ss_pred             HHHHHH-hCCCCCEEEEechHHHHHHH
Q 032797           88 LQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        88 ~~~i~~-~~~~~PvLGIClG~QlLa~a  113 (133)
                      .+.|++ ++++.|+.|.--|.-+++..
T Consensus       107 ~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145         107 LDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence            456666 47899999999999998765

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.90  E-value=0.56  Score=37.56  Aligned_cols=75  Identities=15%  Similarity=0.132  Sum_probs=47.4

Q ss_pred             eEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCC-------------------CHHHHccCCCCEEEECCCCCCc
Q 032797           26 PIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPGAP   81 (133)
Q Consensus        26 ~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~-------------------~~~~l~~~~~DgvIl~GG~~~~   81 (133)
                      +|.|+-+.+.-     ...+.++|++.|+++.+.+....                   ...++. .++|.+|.-||-|  
T Consensus         3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG--   79 (305)
T PRK02649          3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGGDG--   79 (305)
T ss_pred             EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEeCcH--
Confidence            57888664331     23466788889998876432100                   011221 2589999999944  


Q ss_pred             CCchHHHHHHHHh-CCCCCEEEEechH
Q 032797           82 QDSGISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        82 ~d~~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                          .++...+.+ ..++|+|||=.|.
T Consensus        80 ----TlL~aar~~~~~~iPilGIN~G~  102 (305)
T PRK02649         80 ----TVLSAARQLAPCGIPLLTINTGH  102 (305)
T ss_pred             ----HHHHHHHHhcCCCCcEEEEeCCC
Confidence                456666665 5789999998874

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.83  E-value=0.6  Score=37.05  Aligned_cols=77  Identities=12%  Similarity=0.069  Sum_probs=49.1

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC-------CHHHHccCCCCEEEECCCCCCcCCchHHHHHHH
Q 032797           24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVL   92 (133)
Q Consensus        24 ~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~-------~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~   92 (133)
                      .++|.++-+.+...    ..+.++|++.|+++.+.+....       ..+++. .++|.+|.-||-|      .++...+
T Consensus        10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG------T~L~aa~   82 (287)
T PRK14077         10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGDG------TLISLCR   82 (287)
T ss_pred             CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCCH------HHHHHHH
Confidence            34688886644322    2356678888988876432100       112222 2689999889844      4566666


Q ss_pred             Hh-CCCCCEEEEechH
Q 032797           93 EL-GPTVPLFGVCMGL  107 (133)
Q Consensus        93 ~~-~~~~PvLGIClG~  107 (133)
                      .+ ..++|+|||=.|.
T Consensus        83 ~~~~~~~PilGIN~G~   98 (287)
T PRK14077         83 KAAEYDKFVLGIHAGH   98 (287)
T ss_pred             HhcCCCCcEEEEeCCC
Confidence            65 5689999999997

>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial

Probab=93.67  E-value=0.9  Score=32.92  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=37.0

Q ss_pred             CCCeEEEE---E----CCCCchHHHHHHHHhCCCeEEEEeCCCCCHHH----Hc----cCCCCEEEECCCCC-CcCCc
Q 032797           23 NKNPIIVI---D----NYDSFTYNLCQYMGELGYHFEVYRNDELTVEE----LK----RKNPRGVLISPGPG-APQDS   84 (133)
Q Consensus        23 ~~~~i~vi---d----~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~----l~----~~~~DgvIl~GG~~-~~~d~   84 (133)
                      ...++.||   |    -+|++...+..+|++.|+++..+..-..+.++    +.    ..++|.||.+||.+ ++.|.
T Consensus         3 ~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~   80 (163)
T TIGR02667         3 IPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDV   80 (163)
T ss_pred             CccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCC
Confidence            34566655   2    24556667888899999987654321012222    11    13699999999976 44443

This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=93.47  E-value=0.34  Score=35.61  Aligned_cols=80  Identities=15%  Similarity=0.076  Sum_probs=47.4

Q ss_pred             CeEEEE-ECCCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHh---C
Q 032797           25 NPIIVI-DNYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL---G   95 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~---~   95 (133)
                      ||+||+ ...++.+..+.+    -|++.|.++++.+....  .++...+||.||| |.+-... .......++++.   -
T Consensus         1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~--~~~~l~~ydavVI-gAsI~~~h~~~~~~~Fv~k~~e~L   77 (175)
T COG4635           1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV--EEPALEDYDAVVI-GASIRYGHFHEAVQSFVKKHAEAL   77 (175)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh--hccChhhCceEEE-ecchhhhhhHHHHHHHHHHHHHHH
Confidence            567766 556677776554    46788999999886532  2222248999999 4322111 112233455432   3


Q ss_pred             CCCCEEEEechH
Q 032797           96 PTVPLFGVCMGL  107 (133)
Q Consensus        96 ~~~PvLGIClG~  107 (133)
                      ..+|.--+|.+.
T Consensus        78 ~~kP~A~f~vnl   89 (175)
T COG4635          78 STKPSAFFSVNL   89 (175)
T ss_pred             hcCCceEEEeeh
Confidence            567888777664

>PLN02929 NADH kinase

Probab=93.31  E-value=0.41  Score=38.33  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=40.4

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEech
Q 032797           39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG  106 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIClG  106 (133)
                      .+.++|++.|+++..+...+.  .+. ..++|.+|.-||-|      .++...+.+..++|++||=.|
T Consensus        38 ~~~~~L~~~gi~~~~v~r~~~--~~~-~~~~Dlvi~lGGDG------T~L~aa~~~~~~iPvlGIN~G   96 (301)
T PLN02929         38 FCKDILQQKSVDWECVLRNEL--SQP-IRDVDLVVAVGGDG------TLLQASHFLDDSIPVLGVNSD   96 (301)
T ss_pred             HHHHHHHHcCCEEEEeecccc--ccc-cCCCCEEEEECCcH------HHHHHHHHcCCCCcEEEEECC
Confidence            466788899998865532211  111 13789999999954      345555556678999999998

>smart00852 MoCF_biosynth Probable molybdopterin binding domain

Probab=92.79  E-value=0.59  Score=32.38  Aligned_cols=60  Identities=28%  Similarity=0.451  Sum_probs=33.9

Q ss_pred             CCCchHHHHHHHHhCCCeEEEEe--CCCCC-H-HHHc--cCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797           33 YDSFTYNLCQYMGELGYHFEVYR--NDELT-V-EELK--RKNPRGVLISPGPGAPQDSGISLQTVLE   93 (133)
Q Consensus        33 ~~~~~~~i~~~l~~~G~~~~v~~--~~~~~-~-~~l~--~~~~DgvIl~GG~~~~~d~~~~~~~i~~   93 (133)
                      +|.....+.++|++.|+++....  .|+.. . +.+.  ...+|.||.+||-+ +...+...+.+++
T Consensus        16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~~   81 (135)
T smart00852       16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVAE   81 (135)
T ss_pred             ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHHH
Confidence            35666678899999998764332  12211 1 1121  13699999999976 3333333344444

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.65  E-value=0.067  Score=38.12  Aligned_cols=72  Identities=8%  Similarity=0.138  Sum_probs=45.1

Q ss_pred             hHHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCc------hHHHHHHHHh-CCCCCEEEEechH
Q 032797           37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS------GISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        37 ~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~------~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                      ...+.+.|++.|++++.++....+.++...  ..+|+|+++||.  +...      ..+.+.|++. .+++|+.|.--|.
T Consensus         2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA   79 (154)
T PF03575_consen    2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGD--TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGA   79 (154)
T ss_dssp             HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHH
T ss_pred             HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHH
Confidence            445678899999998877664322223221  379999999983  2211      1235677764 7789999999998


Q ss_pred             HHH
Q 032797          108 QCI  110 (133)
Q Consensus       108 QlL  110 (133)
                      -++
T Consensus        80 ~i~   82 (154)
T PF03575_consen   80 MIL   82 (154)
T ss_dssp             HCT
T ss_pred             hhc
Confidence            664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=92.63  E-value=0.26  Score=31.84  Aligned_cols=77  Identities=21%  Similarity=0.339  Sum_probs=48.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      |+|+|........+.+.|+..|+ .+............+....+|.+++--...+ .+.....+.|++...+.|++.++
T Consensus         1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t   78 (112)
T PF00072_consen    1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT   78 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence            67888766667778888998888 6655432111122334457999988433211 22334556676656789999988

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.55  E-value=1.2  Score=35.40  Aligned_cols=75  Identities=20%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             eEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC----------CHHHHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797           26 PIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQT   90 (133)
Q Consensus        26 ~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~~----------~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~   90 (133)
                      +|.|+-+.+. .    ...+.++|++.|+++.+.+....          ...++ ...+|.+|..||-|      .+...
T Consensus         6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDG------t~l~~   78 (295)
T PRK01231          6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDG------SLLGA   78 (295)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcH------HHHHH
Confidence            5888865333 2    22466778888998877542100          01112 13589999989844      34455


Q ss_pred             HHHh-CCCCCEEEEechH
Q 032797           91 VLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        91 i~~~-~~~~PvLGIClG~  107 (133)
                      .+.+ ..++|++||=.|.
T Consensus        79 ~~~~~~~~~Pvlgin~G~   96 (295)
T PRK01231         79 ARALARHNVPVLGINRGR   96 (295)
T ss_pred             HHHhcCCCCCEEEEeCCc
Confidence            5655 5789999999875

>PRK05569 flavodoxin; Provisional

Probab=92.47  E-value=2.5  Score=29.12  Aligned_cols=76  Identities=11%  Similarity=0.049  Sum_probs=42.6

Q ss_pred             eEEEE-ECCCCchHHHHHHH----HhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCC---cCCchHHHHHHHHh---
Q 032797           26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA---PQDSGISLQTVLEL---   94 (133)
Q Consensus        26 ~i~vi-d~~~~~~~~i~~~l----~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~---~~d~~~~~~~i~~~---   94 (133)
                      +|+|+ ....+++..+.+.+    ++.|.++++.+....+..++.  ++|+|++ |.|--   ......+..++..+   
T Consensus         3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsPty~~~~~~~~~~~~~~~~l~~~   79 (141)
T PRK05569          3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVL--EADAVAF-GSPSMDNNNIEQEEMAPFLDQFKLT   79 (141)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHh--hCCEEEE-ECCCcCCCcCChHHHHHHHHHhhcc
Confidence            55555 44445666666554    446888888776544455554  7999999 55421   11112334444443   


Q ss_pred             C-CCCCEEEEe
Q 032797           95 G-PTVPLFGVC  104 (133)
Q Consensus        95 ~-~~~PvLGIC  104 (133)
                      . .++++.-++
T Consensus        80 ~~~~K~v~~f~   90 (141)
T PRK05569         80 PNENKKCILFG   90 (141)
T ss_pred             CcCCCEEEEEe
Confidence            2 467765554

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.41  E-value=0.34  Score=34.47  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=27.0

Q ss_pred             CCCEEEECCCCCCcC---CchHHHHHHHHhCCCCCEEEEec
Q 032797           68 NPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPLFGVCM  105 (133)
Q Consensus        68 ~~DgvIl~GG~~~~~---d~~~~~~~i~~~~~~~PvLGICl  105 (133)
                      ..|.+|+.||-..|.   +.+...+++.+. .++|+.|+|+
T Consensus        85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~-~~kkliGvCf  124 (154)
T COG4090          85 SADVVVLLGGLAMPKIGVTPDDAKELLEEL-GNKKLIGVCF  124 (154)
T ss_pred             cccEEEEEcccccCcCCCCHHHHHHHHHhc-CCCceEEeeH
Confidence            599999999977665   334456666654 3459999995

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.38  E-value=0.7  Score=36.25  Aligned_cols=64  Identities=28%  Similarity=0.441  Sum_probs=41.6

Q ss_pred             CeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-C--CC
Q 032797           25 NPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT   97 (133)
Q Consensus        25 ~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~--~~   97 (133)
                      |++.++.+......    .+.++|++.|+++     +        ..++|.+|.-||-|      .++...+.+ .  .+
T Consensus         1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-----~--------~~~~Dlvi~iGGDG------T~L~a~~~~~~~~~~   61 (265)
T PRK04885          1 MKVAIISNGDPKSKRVASKLKKYLKDFGFIL-----D--------EKNPDIVISVGGDG------TLLSAFHRYENQLDK   61 (265)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-----C--------CcCCCEEEEECCcH------HHHHHHHHhcccCCC
Confidence            46788866332222    2455666677752     1        02579999999944      455666665 3  58


Q ss_pred             CCEEEEechH
Q 032797           98 VPLFGVCMGL  107 (133)
Q Consensus        98 ~PvLGIClG~  107 (133)
                      +|++||=.|.
T Consensus        62 iPilGIN~G~   71 (265)
T PRK04885         62 VRFVGVHTGH   71 (265)
T ss_pred             CeEEEEeCCC
Confidence            9999999885

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.36  E-value=1.2  Score=35.55  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC--CHH---HHccCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 032797           25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL--TVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL   94 (133)
Q Consensus        25 ~~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~~--~~~---~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~   94 (133)
                      ++++++-+.+. .    ...+.++|++.|+++.+.+....  ...   ......+|.+|..||-|      .+.+.++.+
T Consensus         4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------T~l~~~~~~   77 (305)
T PRK02645          4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------TVLAAARHL   77 (305)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH------HHHHHHHHh
Confidence            45777755332 2    12356678888998876543211  000   11123689999999844      355666665


Q ss_pred             -CCCCCEEEEec
Q 032797           95 -GPTVPLFGVCM  105 (133)
Q Consensus        95 -~~~~PvLGICl  105 (133)
                       ..++|++||=.
T Consensus        78 ~~~~~pv~gin~   89 (305)
T PRK02645         78 APHDIPILSVNV   89 (305)
T ss_pred             ccCCCCEEEEec
Confidence             57899999998

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.03  E-value=1.2  Score=38.54  Aligned_cols=80  Identities=15%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             CCCCeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCCCHH----H----H-ccCCCCEEEECCCCCCcCCchHH
Q 032797           22 NNKNPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----E----L-KRKNPRGVLISPGPGAPQDSGIS   87 (133)
Q Consensus        22 ~~~~~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~~~~~----~----l-~~~~~DgvIl~GG~~~~~d~~~~   87 (133)
                      ..+++|.|+-+... .    ...+.++|++.|+++.+.+.......    +    . ...++|.+|..||-|      .+
T Consensus       288 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG------T~  361 (569)
T PRK14076        288 IKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG------TV  361 (569)
T ss_pred             cCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH------HH
Confidence            45568988866332 2    22466778888988776432100000    0    0 012579999999944      45


Q ss_pred             HHHHHHh-CCCCCEEEEechH
Q 032797           88 LQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        88 ~~~i~~~-~~~~PvLGIClG~  107 (133)
                      +...+.+ ..++|+|||=.|.
T Consensus       362 L~aa~~~~~~~~PilGin~G~  382 (569)
T PRK14076        362 LRASKLVNGEEIPIICINMGT  382 (569)
T ss_pred             HHHHHHhcCCCCCEEEEcCCC
Confidence            5666665 5689999999885

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.98  E-value=1.2  Score=34.65  Aligned_cols=70  Identities=13%  Similarity=0.127  Sum_probs=43.9

Q ss_pred             CeEEEEECCCCc--hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 032797           25 NPIIVIDNYDSF--TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (133)
Q Consensus        25 ~~i~vid~~~~~--~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (133)
                      |++.++...++.  ...+.++|.+.|.++...... .   + ...++|.+|.-||-|      .++...+.+  ++|++|
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~-~~~~~d~vi~iGGDG------T~L~a~~~~--~~Pilg   67 (256)
T PRK14075          1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEAS-A---S-GKVTADLIIVVGGDG------TVLKAAKKV--GTPLVG   67 (256)
T ss_pred             CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeeccc-c---c-ccCCCCEEEEECCcH------HHHHHHHHc--CCCEEE
Confidence            567777543322  234666777788766543221 1   1 123789999999954      344555555  799999


Q ss_pred             EechH
Q 032797          103 VCMGL  107 (133)
Q Consensus       103 IClG~  107 (133)
                      |=.|.
T Consensus        68 in~G~   72 (256)
T PRK14075         68 FKAGR   72 (256)
T ss_pred             EeCCC
Confidence            99886

>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function

Probab=91.82  E-value=0.071  Score=38.35  Aligned_cols=82  Identities=15%  Similarity=0.248  Sum_probs=46.6

Q ss_pred             CCCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCCC--------------HHHHccCCCCEEEECCCCCCcC---
Q 032797           23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAPQ---   82 (133)
Q Consensus        23 ~~~~i~vid~~~~~---~~~i~~~l~~~G~~~~v~~~~~~~--------------~~~l~~~~~DgvIl~GG~~~~~---   82 (133)
                      ...+|+.+..-+-.   ...+...+|..+.+...+|..+..              .++..+.++|.+||.||-..|.   
T Consensus        18 ~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~~~~~~~~~~D~vVlmGGLAMP~~~v   97 (147)
T PF09897_consen   18 DGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQVLGEKKDPHPDVVVLMGGLAMPKSGV   97 (147)
T ss_dssp             T-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE-EEEE--S-EEEEEEEGGGGSTTTS-
T ss_pred             CCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCcccccccccCCCCCCEEEEEcccccCCCCC
Confidence            34578888765433   334555677777777777764211              0111112589999999966665   


Q ss_pred             CchHHHHHHHHhCCCCCEEEEec
Q 032797           83 DSGISLQTVLELGPTVPLFGVCM  105 (133)
Q Consensus        83 d~~~~~~~i~~~~~~~PvLGICl  105 (133)
                      +.+...++|.++..+ .+.|||+
T Consensus        98 ~~e~v~~li~ki~~~-~iiGiCF  119 (147)
T PF09897_consen   98 TPEDVNELIKKISPK-KIIGICF  119 (147)
T ss_dssp             -HHHHHHHHHHHEEE-EEEEEEE
T ss_pred             CHHHHHHHHHHhCcC-CEEEEeh
Confidence            445567778876322 2999997

; PDB: 2R47_D.

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.04  E-value=0.4  Score=35.47  Aligned_cols=53  Identities=15%  Similarity=0.153  Sum_probs=40.5

Q ss_pred             CCCCEEEECCCCCCcCCc-------------hHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797           67 KNPRGVLISPGPGAPQDS-------------GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~~d~-------------~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      ..+|++|++||.|.....             .....+.+.+ +.++|+--||..--++..-||-.+.
T Consensus        84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~  150 (217)
T COG3155          84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLR  150 (217)
T ss_pred             HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCcee
Confidence            478999999999865421             1234555555 7899999999999999999987543

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=90.92  E-value=1.3  Score=34.99  Aligned_cols=62  Identities=26%  Similarity=0.395  Sum_probs=41.1

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCC----------CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEech
Q 032797           38 YNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG  106 (133)
Q Consensus        38 ~~i~~~l~~~G~~~~v~~~~~~----------~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG  106 (133)
                      ..+.++|++.|+++.+.+....          +.+++. ..+|.+|.-||-|      .++...+.+ ..++|+|||=.|
T Consensus         3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDG------T~L~aa~~~~~~~~PilgIn~G   75 (272)
T PRK02231          3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGDG------NMLGRARVLAKYDIPLIGINRG   75 (272)
T ss_pred             HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCcH------HHHHHHHHhccCCCcEEEEeCC
Confidence            3467788889988876432100          112222 2589999999944      455666665 568999999988

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=90.54  E-value=0.57  Score=37.97  Aligned_cols=46  Identities=20%  Similarity=0.178  Sum_probs=35.8

Q ss_pred             CCCEEEECCCCCCcCCc--hHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           68 NPRGVLISPGPGAPQDS--GISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        68 ~~DgvIl~GG~~~~~d~--~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+|-+++++|.+.....  ....+++++. .++.++-|||-|.-+||++
T Consensus        76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a  124 (328)
T COG4977          76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA  124 (328)
T ss_pred             cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence            48888887775533322  4477889885 7899999999999999985

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=90.40  E-value=1.3  Score=34.65  Aligned_cols=66  Identities=9%  Similarity=0.035  Sum_probs=42.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI  103 (133)
                      ||..++.+.+.....+.+.|++.=-..     . .     ...++|.+|.-||-|      .++...+.+ ..++|++||
T Consensus         1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~-----~-~-----~~~~~D~vi~iGGDG------T~L~a~~~~~~~~iPilGI   63 (259)
T PRK00561          1 MKYKIFASTTPQTEPVLPKLKKVLKKK-----L-A-----VEDGADYLFVLGGDG------FFVSTAANYNCAGCKVVGI   63 (259)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHhhC-----C-C-----ccCCCCEEEEECCcH------HHHHHHHHhcCCCCcEEEE
Confidence            467888877666666666665510000     0 0     113689999999944      456666665 678999999


Q ss_pred             echH
Q 032797          104 CMGL  107 (133)
Q Consensus       104 ClG~  107 (133)
                      =.|.
T Consensus        64 N~G~   67 (259)
T PRK00561         64 NTGH   67 (259)
T ss_pred             ecCC
Confidence            9884

>PRK06703 flavodoxin; Provisional

Probab=90.22  E-value=3.4  Score=28.94  Aligned_cols=48  Identities=15%  Similarity=0.278  Sum_probs=29.6

Q ss_pred             CeEEEE-ECCCCchHHHHHH----HHhCCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797           25 NPIIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~~~----l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl   74 (133)
                      ++++|+ ....+.+..+.+.    ++..|.++++.+..+....++.  ++|.|++
T Consensus         2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vii   54 (151)
T PRK06703          2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELL--AYDGIIL   54 (151)
T ss_pred             CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHh--cCCcEEE
Confidence            355555 4444556655544    5557888887776544444554  7899988

>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e

Probab=90.04  E-value=0.6  Score=31.57  Aligned_cols=76  Identities=17%  Similarity=0.205  Sum_probs=45.0

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      ||+|||....-.+.+.-.|...|.+++.+...+.. ........+++++..|..+  ......+.+.+.....|++-+-
T Consensus         1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~-~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlllg   76 (109)
T PF06490_consen    1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWS-QADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLLG   76 (109)
T ss_pred             CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHH-HhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEEC
Confidence            68999876555667777888899999887653221 1112235777766555333  2222233333335578998653

g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).

>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative

Probab=89.99  E-value=3.5  Score=28.63  Aligned_cols=77  Identities=14%  Similarity=0.058  Sum_probs=37.4

Q ss_pred             CeEEEE-ECCCCchHHHHHHH----HhCCCeEE-EEeCCCC--CHHHHccCCCCEEEECCCCC-CcCCc-hHHHHHHHHh
Q 032797           25 NPIIVI-DNYDSFTYNLCQYM----GELGYHFE-VYRNDEL--TVEELKRKNPRGVLISPGPG-APQDS-GISLQTVLEL   94 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~~~l----~~~G~~~~-v~~~~~~--~~~~l~~~~~DgvIl~GG~~-~~~d~-~~~~~~i~~~   94 (133)
                      |+++|+ ....+.+..+.+.+    ...|.+++ +.+..+.  ...++  .++|.+|+ |.|- .-... ..+..+++.+
T Consensus         1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~d~iil-gs~t~~~g~~p~~~~~fl~~l   77 (140)
T TIGR01754         1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDP--ENYDLVFL-GTWTWERGRTPDEMKDFIAEL   77 (140)
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCCh--hhCCEEEE-EcCeeCCCcCCHHHHHHHHHh
Confidence            466655 44445666666554    44577765 2222211  11122  26899888 4432 11122 2345566654


Q ss_pred             -CCCCCE--EEEe
Q 032797           95 -GPTVPL--FGVC  104 (133)
Q Consensus        95 -~~~~Pv--LGIC  104 (133)
                       .+++.+  ||.|
T Consensus        78 ~~~~k~~avfgtg   90 (140)
T TIGR01754        78 GYKPSNVAIFGTG   90 (140)
T ss_pred             cccCCEEEEEEcC
Confidence             345555  4444

This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.

>PRK09468 ompR osmolarity response regulator; Provisional

Probab=89.91  E-value=2.7  Score=30.81  Aligned_cols=82  Identities=17%  Similarity=0.231  Sum_probs=48.0

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv  100 (133)
                      ....+|++++........+...|+..|+++..........+.+....+|.+|+--.  .+...+ ...+.++......|+
T Consensus         3 ~~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~~~~~pi   80 (239)
T PRK09468          3 QENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLM--LPGEDGLSICRRLRSQNNPTPI   80 (239)
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCE
Confidence            34568999987666666788888888988765432111111223346898887322  122222 234445543356899


Q ss_pred             EEEec
Q 032797          101 FGVCM  105 (133)
Q Consensus       101 LGICl  105 (133)
                      +-++-
T Consensus        81 i~ls~   85 (239)
T PRK09468         81 IMLTA   85 (239)
T ss_pred             EEEEC
Confidence            88864

>PLN02935 Bifunctional NADH kinase/NAD(+) kinase

Probab=89.44  E-value=3.5  Score=35.42  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=46.9

Q ss_pred             CCeEEEEECCCCc-----hHHHHHHHH-hCCCeEEEEeCCCC----------------CHHHH--ccCCCCEEEECCCCC
Q 032797           24 KNPIIVIDNYDSF-----TYNLCQYMG-ELGYHFEVYRNDEL----------------TVEEL--KRKNPRGVLISPGPG   79 (133)
Q Consensus        24 ~~~i~vid~~~~~-----~~~i~~~l~-~~G~~~~v~~~~~~----------------~~~~l--~~~~~DgvIl~GG~~   79 (133)
                      ..+|+|+-+...-     ...+.++|+ ..|+++.+.+....                +..++  ....+|.+|..||-|
T Consensus       194 p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDG  273 (508)
T PLN02935        194 PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDG  273 (508)
T ss_pred             CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcH
Confidence            5578888654331     234667787 47887766432100                00111  012589999999944


Q ss_pred             CcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797           80 APQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        80 ~~~d~~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                            .++...+.+ ..++|||||=.|.
T Consensus       274 ------TlL~Aar~~~~~~iPILGIN~G~  296 (508)
T PLN02935        274 ------TVLWAASMFKGPVPPVVPFSMGS  296 (508)
T ss_pred             ------HHHHHHHHhccCCCcEEEEeCCC
Confidence                  455666665 5679999999873

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional

Probab=89.01  E-value=2.7  Score=30.42  Aligned_cols=79  Identities=11%  Similarity=0.209  Sum_probs=45.5

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      |+|++++........+...|+..|+.+............+....+|.+++--.  .|...+ ...+.++......|++-+
T Consensus         1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~l~~~lr~~~~~~pii~l   78 (223)
T PRK10816          1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL   78 (223)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            47899987666666788888888987764432111112233347898887322  222222 233444443456898887


Q ss_pred             ec
Q 032797          104 CM  105 (133)
Q Consensus       104 Cl  105 (133)
                      .-
T Consensus        79 s~   80 (223)
T PRK10816         79 TA   80 (223)
T ss_pred             Ec
Confidence            54

>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD)

Probab=88.93  E-value=1.5  Score=30.32  Aligned_cols=46  Identities=17%  Similarity=0.157  Sum_probs=29.1

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----cc--CCCCEEEECCCCC
Q 032797           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG   79 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~--~~~DgvIl~GG~~   79 (133)
                      |++...+.+++++.|+++.....-..+.+++    ..  .++|.||.+||-+
T Consensus        18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g   69 (133)
T cd00758          18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG   69 (133)
T ss_pred             EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence            3556678888999999876543211122222    11  2599999999965

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.

>PLN02727 NAD kinase

Probab=88.72  E-value=3.3  Score=38.08  Aligned_cols=79  Identities=11%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             CCCCeEEEEECCCCch----HHHHHHHHhC-CCeEEEEeCCCC-----------------CHHHHccCCCCEEEECCCCC
Q 032797           22 NNKNPIIVIDNYDSFT----YNLCQYMGEL-GYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPG   79 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~----~~i~~~l~~~-G~~~~v~~~~~~-----------------~~~~l~~~~~DgvIl~GG~~   79 (133)
                      .+..+|+||-......    ..+.++|.+. |+++.+-+....                 ..+++. ..+|.+|..||-|
T Consensus       676 ~p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGDG  754 (986)
T PLN02727        676 STPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGDG  754 (986)
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcc-cCCCEEEEECCcH
Confidence            4456888886543321    2367788876 887765432100                 001111 2589999999844


Q ss_pred             CcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797           80 APQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        80 ~~~d~~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                            .++...+.+ ..++|||||=+|.
T Consensus       755 ------TlLrAar~~~~~~iPILGINlGr  777 (986)
T PLN02727        755 ------VILHASNLFRGAVPPVVSFNLGS  777 (986)
T ss_pred             ------HHHHHHHHhcCCCCCEEEEeCCC
Confidence                  455666665 5689999999885

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=88.57  E-value=3.1  Score=32.76  Aligned_cols=73  Identities=14%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             CeEEEEECCCC-ch----HHHHHHHHhCCCeEEEEeCCCCCHH----HHccCCCCEEEECCCCCCcCCchHHHHHHHHhC
Q 032797           25 NPIIVIDNYDS-FT----YNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSGISLQTVLELG   95 (133)
Q Consensus        25 ~~i~vid~~~~-~~----~~i~~~l~~~G~~~~v~~~~~~~~~----~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~   95 (133)
                      |+|.++-+.+. ..    ..+.++| +.|+++.+.........    +....++|.+|.-||-|+      ++...+.+.
T Consensus         1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT------~L~a~~~~~   73 (271)
T PRK01185          1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGT------ILRTLQRAK   73 (271)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHH------HHHHHHHcC
Confidence            56888755433 22    2355566 46877765322100000    111126899999999553      444444443


Q ss_pred             CCCCEEEEech
Q 032797           96 PTVPLFGVCMG  106 (133)
Q Consensus        96 ~~~PvLGIClG  106 (133)
                        .|+|||=.|
T Consensus        74 --~PilGIN~G   82 (271)
T PRK01185         74 --GPILGINMG   82 (271)
T ss_pred             --CCEEEEECC
Confidence              699999998

>CHL00148 orf27 Ycf27; Reviewed

Probab=88.52  E-value=4  Score=29.65  Aligned_cols=82  Identities=20%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 032797           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP   99 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~P   99 (133)
                      ..+.++|+++|........+.+.|+..|+.+............+....+|.+++--..  +...+ ...+.++.. ...|
T Consensus         3 ~~~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~--~~~~g~~~~~~l~~~-~~~~   79 (240)
T CHL00148          3 ENSKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMM--PKLDGYGVCQEIRKE-SDVP   79 (240)
T ss_pred             CCCCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHhc-CCCc
Confidence            4456799999986666667888888888776533221001122333468988873321  22222 233444442 4688


Q ss_pred             EEEEec
Q 032797          100 LFGVCM  105 (133)
Q Consensus       100 vLGICl  105 (133)
                      ++.++-
T Consensus        80 ii~ls~   85 (240)
T CHL00148         80 IIMLTA   85 (240)
T ss_pred             EEEEEC
Confidence            888763

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=88.21  E-value=4.6  Score=31.36  Aligned_cols=54  Identities=17%  Similarity=0.064  Sum_probs=35.4

Q ss_pred             CCCCeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEEC
Q 032797           22 NNKNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS   75 (133)
Q Consensus        22 ~~~~~i~vid~~~~~--------~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~   75 (133)
                      .+.++|+|+-.+++-        ...+.++|++.|++++++..+......+...++|.++..
T Consensus         2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~   63 (304)
T PRK01372          2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA   63 (304)
T ss_pred             CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence            455688888533322        235788999999999988765333333334479988875

>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A

Probab=88.18  E-value=2  Score=32.00  Aligned_cols=78  Identities=21%  Similarity=0.210  Sum_probs=41.9

Q ss_pred             HHHHHH-hCCCeEEEEeC-CCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEechH-------HH
Q 032797           40 LCQYMG-ELGYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL-------QC  109 (133)
Q Consensus        40 i~~~l~-~~G~~~~v~~~-~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIClG~-------Ql  109 (133)
                      +.+.|+ ..++++++... +..+.+.+  .+||.||+....++..+.. ..+.+++ ++++.+++||..++       .-
T Consensus        24 l~~ll~~~~~~~v~~~~~~~~~~~~~L--~~~Dvvv~~~~~~~~l~~~-~~~al~~~v~~Ggglv~lH~~~~~~~~~~~~  100 (217)
T PF06283_consen   24 LAQLLEESEGFEVTVTEDPDDLTPENL--KGYDVVVFYNTGGDELTDE-QRAALRDYVENGGGLVGLHGAATDSFPDWPE  100 (217)
T ss_dssp             HHHHHHHTTCEEEEECCSGGCTSHHCH--CT-SEEEEE-SSCCGS-HH-HHHHHHHHHHTT-EEEEEGGGGGCCHTT-HH
T ss_pred             HHHHhccCCCEEEEEEeCcccCChhHh--cCCCEEEEECCCCCcCCHH-HHHHHHHHHHcCCCEEEEcccccccchhHHH
Confidence            455566 46777776542 11233344  3899999877654332233 3344544 58899999998444       23


Q ss_pred             HHHHhCCeeee
Q 032797          110 IGEAFGDCAFS  120 (133)
Q Consensus       110 La~a~GG~v~~  120 (133)
                      ....+||....
T Consensus       101 ~~~l~Gg~f~~  111 (217)
T PF06283_consen  101 YNELLGGYFKG  111 (217)
T ss_dssp             HHHHHS--SEE
T ss_pred             HHHeeCccccC
Confidence            55577776543

>TIGR00177 molyb_syn molybdenum cofactor synthesis domain

Probab=87.94  E-value=3.2  Score=29.20  Aligned_cols=46  Identities=24%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----c--cCCCCEEEECCCCC
Q 032797           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG   79 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~--~~~~DgvIl~GG~~   79 (133)
                      |++...+.+.|++.|+++.....-..+.+++    .  ..++|.||.+||.+
T Consensus        26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g   77 (144)
T TIGR00177        26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG   77 (144)
T ss_pred             eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence            3566678889999999877543211122222    1  13799999999965

The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.

>cd00885 cinA Competence-damaged protein

Probab=87.75  E-value=3.6  Score=29.99  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=28.5

Q ss_pred             CCchHHHHHHHHhCCCeEEEEe--CCCCC--HHHHc--cCCCCEEEECCCCC
Q 032797           34 DSFTYNLCQYMGELGYHFEVYR--NDELT--VEELK--RKNPRGVLISPGPG   79 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v~~--~~~~~--~~~l~--~~~~DgvIl~GG~~   79 (133)
                      |++...+.+.|++.|+++....  .|+..  .+.+.  ...+|.||.+||-+
T Consensus        18 d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G   69 (170)
T cd00885          18 DTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG   69 (170)
T ss_pred             EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence            3455678889999999875432  22111  11121  13789999999965

CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.

>PRK05568 flavodoxin; Provisional

Probab=87.75  E-value=7  Score=26.82  Aligned_cols=77  Identities=17%  Similarity=0.119  Sum_probs=43.9

Q ss_pred             eEEEE-ECCCCchHHHHHHH----HhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC---chHHHHHHHHh---
Q 032797           26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---SGISLQTVLEL---   94 (133)
Q Consensus        26 ~i~vi-d~~~~~~~~i~~~l----~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d---~~~~~~~i~~~---   94 (133)
                      +++|+ ....+++..+.+.+    ++.|.++++++..+.+..++.  ++|+|++ |.|---..   ...+..++.++   
T Consensus         3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsp~y~~~~~~~~~~~~f~~~~~~~   79 (142)
T PRK05568          3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVK--GADVVAL-GSPAMGDEVLEEGEMEPFVESISSL   79 (142)
T ss_pred             eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHH--hCCEEEE-ECCccCcccccchhHHHHHHHhhhh
Confidence            34444 55556777665554    456888888876544455554  7999998 55431111   12344444442   


Q ss_pred             CCCCCEEEEec
Q 032797           95 GPTVPLFGVCM  105 (133)
Q Consensus        95 ~~~~PvLGICl  105 (133)
                      ..++++.-+|-
T Consensus        80 ~~~k~~~~f~t   90 (142)
T PRK05568         80 VKGKKLVLFGS   90 (142)
T ss_pred             hCCCEEEEEEc
Confidence            25667666654

>PRK01215 competence damage-inducible protein A; Provisional

Probab=87.62  E-value=4.8  Score=31.53  Aligned_cols=43  Identities=21%  Similarity=0.268  Sum_probs=27.7

Q ss_pred             CchHHHHHHHHhCCCeEEEEe--CCCCCHHHHc------cCCCCEEEECCCCC
Q 032797           35 SFTYNLCQYMGELGYHFEVYR--NDELTVEELK------RKNPRGVLISPGPG   79 (133)
Q Consensus        35 ~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l~------~~~~DgvIl~GG~~   79 (133)
                      .+...+.+.|++.|+++....  .|  +.+++.      ..++|.||++||-+
T Consensus        23 tn~~~l~~~L~~~G~~v~~~~~v~D--d~~~I~~~l~~a~~~~DlVIttGG~g   73 (264)
T PRK01215         23 TNASWIARRLTYLGYTVRRITVVMD--DIEEIVSAFREAIDRADVVVSTGGLG   73 (264)
T ss_pred             hhHHHHHHHHHHCCCeEEEEEEeCC--CHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            445568888999999875432  22  222221      13689999999965

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional

Probab=87.11  E-value=4.3  Score=28.95  Aligned_cols=78  Identities=15%  Similarity=0.195  Sum_probs=44.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      |+|+++|........+...|+..|+++............+....+|.+++--..  +...+ ...+.++......|++.+
T Consensus         1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~i~~~~~~~~ii~l   78 (219)
T PRK10336          1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL--PGMDGRDILREWREKGQREPVLIL   78 (219)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCC--CCCCHHHHHHHHHhcCCCCcEEEE
Confidence            478999876566667888888888876544321111122333468988874321  11122 234445544456788887


Q ss_pred             e
Q 032797          104 C  104 (133)
Q Consensus       104 C  104 (133)
                      .
T Consensus        79 t   79 (219)
T PRK10336         79 T   79 (219)
T ss_pred             E
Confidence            5

>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional

Probab=86.47  E-value=6.5  Score=32.84  Aligned_cols=58  Identities=16%  Similarity=0.028  Sum_probs=35.3

Q ss_pred             CCCCeEEEEECC----------------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----cc--CCCCEEEECCCCC
Q 032797           22 NNKNPIIVIDNY----------------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG   79 (133)
Q Consensus        22 ~~~~~i~vid~~----------------~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~--~~~DgvIl~GG~~   79 (133)
                      ...+||.|+..+                |++...+...+++.|+++.....-..+.+.+    ..  .++|.||++||.+
T Consensus       191 ~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S  270 (419)
T PRK14690        191 RRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS  270 (419)
T ss_pred             ecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence            345678877443                2344467788999999876443211122222    11  3699999999854

>PRK11083 DNA-binding response regulator CreB; Provisional

Probab=86.36  E-value=6.3  Score=28.22  Aligned_cols=80  Identities=18%  Similarity=0.378  Sum_probs=45.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      .++|+++|........+...|+..|+.+............+....+|.+++--.  .+...+ ...+.++......|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~--~~~~~g~~~~~~l~~~~~~~~ii~   80 (228)
T PRK11083          3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVG--LPDISGFELCRQLLAFHPALPVIF   80 (228)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCCEEE
Confidence            358999987656666778888888887654332111112233346898887322  122222 23344544445688887


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        81 ls~   83 (228)
T PRK11083         81 LTA   83 (228)
T ss_pred             EEc
Confidence            753

>PRK09836 DNA-binding transcriptional activator CusR; Provisional

Probab=86.09  E-value=4.9  Score=29.09  Aligned_cols=78  Identities=9%  Similarity=0.112  Sum_probs=44.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      |+|++++........+...|+..|+.+..........+.+....+|.+++--.  .+...+ ...+.+++...+.|++-+
T Consensus         1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--~~~~~g~~~~~~lr~~~~~~pii~l   78 (227)
T PRK09836          1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIM--LPDVNGWDIVRMLRSANKGMPILLL   78 (227)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            47899988666666788888888886654432111112223346898887322  122222 233445443456888776


Q ss_pred             e
Q 032797          104 C  104 (133)
Q Consensus       104 C  104 (133)
                      -
T Consensus        79 s   79 (227)
T PRK09836         79 T   79 (227)
T ss_pred             E
Confidence            3

>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2

Probab=86.01  E-value=1.9  Score=33.84  Aligned_cols=36  Identities=17%  Similarity=0.366  Sum_probs=27.0

Q ss_pred             cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797           66 RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        66 ~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                      ..++|.+|..||      ++..+...+.+ ..++|++||=.|.
T Consensus        74 ~~~~D~ii~lGG------DGT~L~~~~~~~~~~~Pilgin~G~  110 (285)
T PF01513_consen   74 EEGVDLIIVLGG------DGTFLRAARLFGDYDIPILGINTGT  110 (285)
T ss_dssp             CCCSSEEEEEES------HHHHHHHHHHCTTST-EEEEEESSS
T ss_pred             ccCCCEEEEECC------CHHHHHHHHHhccCCCcEEeecCCC
Confidence            358999999998      44566667776 4599999998874

7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....

>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]

Probab=85.73  E-value=4.6  Score=34.61  Aligned_cols=87  Identities=15%  Similarity=0.182  Sum_probs=55.1

Q ss_pred             cccCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-----CcC-CchHH-HH
Q 032797           18 KKSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-----APQ-DSGIS-LQ   89 (133)
Q Consensus        18 ~~~~~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-----~~~-d~~~~-~~   89 (133)
                      ++.....+||+|+|.+..+. +...+.|.+.|+++..+-...  ...+. ...+-|+| |+..     ..+ ..+.. +.
T Consensus       379 A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a--~syim-~evtkvfL-GahailsNG~vysR~GTa~va  454 (556)
T KOG1467|consen  379 AKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINA--ASYIM-LEVTKVFL-GAHAILSNGAVYSRVGTACVA  454 (556)
T ss_pred             HHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehh--HHHHH-Hhcceeee-chhhhhcCcchhhhcchHHHH
Confidence            57778899999999988775 457888999999988765432  22332 25666666 4421     122 22221 22


Q ss_pred             HHHHhCCCCCEEEEechHHH
Q 032797           90 TVLELGPTVPLFGVCMGLQC  109 (133)
Q Consensus        90 ~i~~~~~~~PvLGIClG~Ql  109 (133)
                      ++. -..++|||-.|--+-.
T Consensus       455 lvA-na~nVPVlVCCE~yKF  473 (556)
T KOG1467|consen  455 LVA-NAFNVPVLVCCEAYKF  473 (556)
T ss_pred             HHh-cccCCCEEEEechhhh
Confidence            222 2467999999976543

>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV

Probab=85.06  E-value=13  Score=27.43  Aligned_cols=94  Identities=13%  Similarity=-0.020  Sum_probs=49.0

Q ss_pred             CeEEEE-ECCCCchHHHHHH----HHhC-CCeEEEEeCCCCC--------------------HHHHccCCCCEEEECCCC
Q 032797           25 NPIIVI-DNYDSFTYNLCQY----MGEL-GYHFEVYRNDELT--------------------VEELKRKNPRGVLISPGP   78 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~~~----l~~~-G~~~~v~~~~~~~--------------------~~~l~~~~~DgvIl~GG~   78 (133)
                      ++|+|| ....+.+..+.+.    +++. |+++++++..+..                    .+++  .++|+||+ |+|
T Consensus         1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~-GSP   77 (197)
T TIGR01755         1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQEL--ADYDAIIF-GTP   77 (197)
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHH--HHCCEEEE-Eec
Confidence            367666 3333556555554    4444 8888887653211                    1233  27999999 554


Q ss_pred             CCcC-CchHHHHHHHHh--------CCCCCEEEEec-----hHH------HHH--HHhCCeeeec
Q 032797           79 GAPQ-DSGISLQTVLEL--------GPTVPLFGVCM-----GLQ------CIG--EAFGDCAFSA  121 (133)
Q Consensus        79 ~~~~-d~~~~~~~i~~~--------~~~~PvLGICl-----G~Q------lLa--~a~GG~v~~~  121 (133)
                      --.. -...+..++...        -.++|+..++-     |-|      ++.  ...|..+...
T Consensus        78 ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~  142 (197)
T TIGR01755        78 TRFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL  142 (197)
T ss_pred             ccccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence            3111 122334444432        13677766664     222      222  5678887754

This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.

>PRK03673 hypothetical protein; Provisional

Probab=84.61  E-value=6.4  Score=32.70  Aligned_cols=45  Identities=11%  Similarity=0.152  Sum_probs=29.0

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cCCCCEEEECCCCC
Q 032797           35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG   79 (133)
Q Consensus        35 ~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~   79 (133)
                      ++...+.+.|++.|+++.....-..+.+.+.      ...+|.||++||-|
T Consensus        21 tN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG   71 (396)
T PRK03673         21 TNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG   71 (396)
T ss_pred             hHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence            4555688889999998754432111233321      13699999999966

>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]

Probab=84.34  E-value=3.8  Score=34.14  Aligned_cols=70  Identities=19%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             CCCCeEEEEEC----------------CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----c--cCCCCEEEECCCCC
Q 032797           22 NNKNPIIVIDN----------------YDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG   79 (133)
Q Consensus        22 ~~~~~i~vid~----------------~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~--~~~~DgvIl~GG~~   79 (133)
                      ...+||.||..                +|++...+...+++.|+++.....-..+.+.+    .  ...+|.||.+||. 
T Consensus       174 ~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~-  252 (404)
T COG0303         174 YRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGV-  252 (404)
T ss_pred             ecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCc-
Confidence            44567888843                23555568888999999876553211122222    1  1369999999995 


Q ss_pred             CcCCchHHHHHHH
Q 032797           80 APQDSGISLQTVL   92 (133)
Q Consensus        80 ~~~d~~~~~~~i~   92 (133)
                      ++.+.+...+.++
T Consensus       253 SvG~~D~v~~~l~  265 (404)
T COG0303         253 SVGDADYVKAALE  265 (404)
T ss_pred             cCcchHhHHHHHH
Confidence            4555555555665

>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain

Probab=84.29  E-value=6.2  Score=32.92  Aligned_cols=46  Identities=13%  Similarity=0.206  Sum_probs=28.8

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----c--cCCCCEEEECCCCC
Q 032797           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG   79 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~--~~~~DgvIl~GG~~   79 (133)
                      |++...+.+.|++.|+++.....-..+.+++    .  ..++|.||++||-+
T Consensus        19 dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg   70 (413)
T TIGR00200        19 NTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG   70 (413)
T ss_pred             EchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence            3455678889999999876432110122222    1  13799999999965

cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species

>PRK10161 transcriptional regulator PhoB; Provisional

Probab=84.19  E-value=7.5  Score=28.15  Aligned_cols=79  Identities=14%  Similarity=0.187  Sum_probs=44.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHh--CCCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~--~~~~Pv  100 (133)
                      .++|+++|........+...|+..|+++..........+.+....+|.+++--..  +... -...+.++..  ....|+
T Consensus         2 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~l~~~~~~~~~pv   79 (229)
T PRK10161          2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGIQFIKHLKRESMTRDIPV   79 (229)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCC--CCCCHHHHHHHHHhccccCCCCE
Confidence            4689999876666667888888888877643321111122333468988883321  1112 2234445442  246788


Q ss_pred             EEEe
Q 032797          101 FGVC  104 (133)
Q Consensus       101 LGIC  104 (133)
                      +-+.
T Consensus        80 i~ls   83 (229)
T PRK10161         80 VMLT   83 (229)
T ss_pred             EEEE
Confidence            8775

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=83.83  E-value=7.1  Score=28.01  Aligned_cols=72  Identities=13%  Similarity=0.026  Sum_probs=45.2

Q ss_pred             CCCCeEEEEEC----CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCCCCcC-CchHHHHHHH
Q 032797           22 NNKNPIIVIDN----YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTVL   92 (133)
Q Consensus        22 ~~~~~i~vid~----~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~~~~~-d~~~~~~~i~   92 (133)
                      ...+||++.-.    .+--..-+.+.|++.|+++...... .+.++.-    ..+.|.|.+|+=.+.-. ....+.+.++
T Consensus        10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr   88 (143)
T COG2185          10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR   88 (143)
T ss_pred             CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH
Confidence            45678877733    3333445778999999999876554 3444432    35899999987544322 2334566677


Q ss_pred             Hh
Q 032797           93 EL   94 (133)
Q Consensus        93 ~~   94 (133)
                      +.
T Consensus        89 e~   90 (143)
T COG2185          89 EA   90 (143)
T ss_pred             Hh
Confidence            65

>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]

Probab=83.80  E-value=12  Score=27.59  Aligned_cols=47  Identities=23%  Similarity=0.370  Sum_probs=28.4

Q ss_pred             HHHHHHHHhCCCeE---EEEeCCCCCH-HHH---ccCCCCEEEECCCCC-CcCCc
Q 032797           38 YNLCQYMGELGYHF---EVYRNDELTV-EEL---KRKNPRGVLISPGPG-APQDS   84 (133)
Q Consensus        38 ~~i~~~l~~~G~~~---~v~~~~~~~~-~~l---~~~~~DgvIl~GG~~-~~~d~   84 (133)
                      ..+.++|++.|.++   .+++.+.... ..+   -...+|.|+.+||-| ++.|.
T Consensus        30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDv   84 (169)
T COG0521          30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDV   84 (169)
T ss_pred             hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcC
Confidence            35788999998876   3444321111 111   112389999999988 56654

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=83.75  E-value=3.2  Score=26.83  Aligned_cols=45  Identities=20%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCC
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA   80 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~   80 (133)
                      ||+|=+   +. ..+.++|++.|++++-....    .++  ..+|++|++|-..+
T Consensus         3 kIAVE~---~L-s~v~~~L~~~GyeVv~l~~~----~~~--~~~daiVvtG~~~n   47 (80)
T PF03698_consen    3 KIAVEE---GL-SNVKEALREKGYEVVDLENE----QDL--QNVDAIVVTGQDTN   47 (80)
T ss_pred             eEEecC---Cc-hHHHHHHHHCCCEEEecCCc----ccc--CCcCEEEEECCCcc
Confidence            555544   33 36889999999988754422    223  37999999997553

>PRK06242 flavodoxin; Provisional

Probab=83.71  E-value=7.8  Score=26.79  Aligned_cols=75  Identities=12%  Similarity=0.026  Sum_probs=39.4

Q ss_pred             CeEEEE-ECC-CCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHh-C-CCC
Q 032797           25 NPIIVI-DNY-DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-G-PTV   98 (133)
Q Consensus        25 ~~i~vi-d~~-~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~-~-~~~   98 (133)
                      |+++|+ ... .+.+..+.+.+.+ .+.+  +++......+++  .++|.||+ |+|---. -...+.+++.++ . .++
T Consensus         1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~--~~~i~~~~~~~~--~~~d~ii~-g~pvy~~~~~~~~~~fl~~~~~~~~k   75 (150)
T PRK06242          1 MKALIVYASVHHGNTEKIAKAIAEVLDAE--VIDPGDVNPEDL--SEYDLIGF-GSGIYFGKFHKSLLKLIEKLPPVSGK   75 (150)
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHhcCcE--EecHHHCCcccH--hHCCEEEE-eCchhcCCcCHHHHHHHHhhhhhcCC
Confidence            456655 333 4678888888765 4543  333321222333  37999999 5542111 123345566553 2 466


Q ss_pred             CEEEEe
Q 032797           99 PLFGVC  104 (133)
Q Consensus        99 PvLGIC  104 (133)
                      |+.-+|
T Consensus        76 ~~~~f~   81 (150)
T PRK06242         76 KAFIFS   81 (150)
T ss_pred             eEEEEE
Confidence            766553

>PRK13435 response regulator; Provisional

Probab=83.27  E-value=7.5  Score=26.22  Aligned_cols=87  Identities=8%  Similarity=0.010  Sum_probs=47.1

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH-HHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 032797           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP   99 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~-~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~P   99 (133)
                      |...++|++++........+.+.+...|+.+.....+.... +.+....+|.+|+--......+.-...+.++. ...+|
T Consensus         2 ~~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~-~~~~p   80 (145)
T PRK13435          2 FLRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSA-DGGVE   80 (145)
T ss_pred             CcccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHh-CCCCC
Confidence            45568899998865666667888887787654222221111 11222368988883221100111122333333 24689


Q ss_pred             EEEEechHH
Q 032797          100 LFGVCMGLQ  108 (133)
Q Consensus       100 vLGIClG~Q  108 (133)
                      ++.+.--.+
T Consensus        81 ii~ls~~~~   89 (145)
T PRK13435         81 VVFMTGNPE   89 (145)
T ss_pred             EEEEeCCHH
Confidence            998876554

>PRK15029 arginine decarboxylase; Provisional

Probab=82.57  E-value=7.2  Score=35.11  Aligned_cols=78  Identities=9%  Similarity=0.027  Sum_probs=45.9

Q ss_pred             CeEEEEECCCC--------chHHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCch-----HHHHH
Q 032797           25 NPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-----ISLQT   90 (133)
Q Consensus        25 ~~i~vid~~~~--------~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~-----~~~~~   90 (133)
                      |||++||-...        ....+.+.|++.|+++............+.. ..+|.+|+-=.  -|...+     .+.+.
T Consensus         1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~--LPd~dG~~~~~ell~~   78 (755)
T PRK15029          1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK   78 (755)
T ss_pred             CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECC--CCCCccchhHHHHHHH
Confidence            47999975432        2556788899999998866532111222333 37999998311  122112     34455


Q ss_pred             HHHhCCCCCEEEEe
Q 032797           91 VLELGPTVPLFGVC  104 (133)
Q Consensus        91 i~~~~~~~PvLGIC  104 (133)
                      ||+...++||+-+.
T Consensus        79 IR~~~~~iPIIlLT   92 (755)
T PRK15029         79 LHERQQNVPVFLLG   92 (755)
T ss_pred             HHhhCCCCCEEEEE
Confidence            55544579998875

>PRK00549 competence damage-inducible protein A; Provisional

Probab=82.51  E-value=10  Score=31.60  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----c--cCCCCEEEECCCCC
Q 032797           34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG   79 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l----~--~~~~DgvIl~GG~~   79 (133)
                      |.+...+.+.|++.|+++....  .|  +.+.+    .  ..++|.||++||-|
T Consensus        19 DtN~~~L~~~L~~~G~~v~~~~~v~D--d~~~I~~~l~~a~~~~DlVItTGGlG   70 (414)
T PRK00549         19 NTNAQFLSEKLAELGIDVYHQTVVGD--NPERLLSALEIAEERSDLIITTGGLG   70 (414)
T ss_pred             EhhHHHHHHHHHHCCCeEEEEEEeCC--CHHHHHHHHHHhccCCCEEEECCCCC
Confidence            3455568889999999775432  22  22222    1  14799999999965

>PRK12359 flavodoxin FldB; Provisional

Probab=82.46  E-value=12  Score=27.32  Aligned_cols=51  Identities=8%  Similarity=0.094  Sum_probs=32.7

Q ss_pred             CeEEEE-ECCCCchHHHHHHHHh-CCCe-EEEEeCCCCCHHHHccCCCCEEEECCCC
Q 032797           25 NPIIVI-DNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGP   78 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~~~l~~-~G~~-~~v~~~~~~~~~~l~~~~~DgvIl~GG~   78 (133)
                      |++.|+ -...+.+..+.+.+.+ .|.+ +++.+....+.+++.  +||.+|+ |.|
T Consensus         1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l~--~yD~iIl-G~p   54 (172)
T PRK12359          1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLME--QYDVLIL-GIP   54 (172)
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHHc--cCCEEEE-Eec
Confidence            566665 4455678888888765 4553 566665444455554  7998888 544

>PRK09271 flavodoxin; Provisional

Probab=82.44  E-value=15  Score=26.07  Aligned_cols=53  Identities=15%  Similarity=0.095  Sum_probs=29.1

Q ss_pred             CeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHH--ccCCCCEEEECCCC
Q 032797           25 NPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGP   78 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~----~~l~~~G~~~~v~~~~~~~~~~l--~~~~~DgvIl~GG~   78 (133)
                      |+|+|+ ....+.+..+.    +.|+..|.++.+.........++  ...++|.++| |.|
T Consensus         1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vil-gt~   60 (160)
T PRK09271          1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLL-GTW   60 (160)
T ss_pred             CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEE-ECc
Confidence            466665 43445555544    45566788887665432222221  1136899998 443

>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]

Probab=82.29  E-value=8.3  Score=31.51  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=49.1

Q ss_pred             CCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEEEEechHHH
Q 032797           32 NYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQC  109 (133)
Q Consensus        32 ~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~--~~~~PvLGIClG~Ql  109 (133)
                      ..+.|.+.+.+++++.|+..++......+.+.    +-.-.+...|-  -.|.....+.+++.  .+..-..|+-+|.-+
T Consensus        88 s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~----n~~p~~yh~G~--t~D~~~~l~~l~~~~~~r~~~avG~SLGgnm  161 (345)
T COG0429          88 SNSPYARGLMRALSRRGWLVVVFHFRGCSGEA----NTSPRLYHSGE--TEDIRFFLDWLKARFPPRPLYAVGFSLGGNM  161 (345)
T ss_pred             CcCHHHHHHHHHHHhcCCeEEEEecccccCCc----ccCcceecccc--hhHHHHHHHHHHHhCCCCceEEEEecccHHH
Confidence            34456667888899999999888764322111    11223333432  12333345566553  566677899999999


Q ss_pred             HHHHhCCe
Q 032797          110 IGEAFGDC  117 (133)
Q Consensus       110 La~a~GG~  117 (133)
                      |+..+|-+
T Consensus       162 La~ylgee  169 (345)
T COG0429         162 LANYLGEE  169 (345)
T ss_pred             HHHHHHhh
Confidence            99988754

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional

Probab=82.26  E-value=8.6  Score=27.37  Aligned_cols=78  Identities=15%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      ++|+++|....+...+...|+..|+.+..........+.+....+|.+++--.  .+...+ ...+.++......|++-+
T Consensus         1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~--~~~~~g~~~~~~l~~~~~~~pii~l   78 (222)
T PRK10643          1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLG--LPDEDGLHLLRRWRQKKYTLPVLIL   78 (222)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCcEEEE
Confidence            47899987666666788888888887654432111112232346898777322  122222 233444443356788776


Q ss_pred             e
Q 032797          104 C  104 (133)
Q Consensus       104 C  104 (133)
                      .
T Consensus        79 s   79 (222)
T PRK10643         79 T   79 (222)
T ss_pred             E
Confidence            4

>smart00448 REC cheY-homologous receiver domain

Probab=82.25  E-value=3.2  Score=21.02  Aligned_cols=50  Identities=24%  Similarity=0.336  Sum_probs=28.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl   74 (133)
                      +++++++........+.+.++..|+.+...+........+....+|.+++
T Consensus         1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   50 (55)
T smart00448        1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILL   50 (55)
T ss_pred             CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence            36778876555556677778778877554332111112232235787776

CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.

>cd03522 MoeA_like MoeA_like

Probab=82.17  E-value=19  Score=29.00  Aligned_cols=60  Identities=12%  Similarity=0.036  Sum_probs=36.6

Q ss_pred             cCCCCCeEEEEECC---------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH-------ccCCCCEEEECCCCC
Q 032797           20 SKNNKNPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL-------KRKNPRGVLISPGPG   79 (133)
Q Consensus        20 ~~~~~~~i~vid~~---------~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l-------~~~~~DgvIl~GG~~   79 (133)
                      .+...+|+.||..+         |++...+...|++.|+++.....-..+.+.+       ...++|.||++||.+
T Consensus       155 ~v~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts  230 (312)
T cd03522         155 APFRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS  230 (312)
T ss_pred             EecCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence            34566788888543         3344567788999999876443211122222       122489999999965

This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.

>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria

Probab=81.97  E-value=7.1  Score=28.80  Aligned_cols=59  Identities=19%  Similarity=0.303  Sum_probs=33.0

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      .+.+++++.|+++.+........      +.+...++||+|+.+..    ....   ..+...+++|+..++
T Consensus        20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~----~~~~---~~~~~~~~ipvv~~~   84 (267)
T cd06284          20 GIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGS----LPPT---ALTALAKLPPIVQAC   84 (267)
T ss_pred             HHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCC----CCHH---HHHHHhcCCCEEEEe
Confidence            35667778899988776532111      11223479999996542    1111   122234478888764

This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.

>PRK10355 xylF D-xylose transporter subunit XylF; Provisional

Probab=81.90  E-value=6.7  Score=31.04  Aligned_cols=76  Identities=12%  Similarity=0.037  Sum_probs=42.1

Q ss_pred             CCCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHH
Q 032797           22 NNKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISL   88 (133)
Q Consensus        22 ~~~~~i~vi--d~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~   88 (133)
                      ....+|.++  +..+.|-.    .+.+++++.|+.+.+...+. +.+       .+...++||+|+.+..     .....
T Consensus        23 ~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~-~~~~~~~~i~~l~~~~vDGiIi~~~~-----~~~~~   96 (330)
T PRK10355         23 AKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANG-NEETQMSQIENMINRGVDVLVIIPYN-----GQVLS   96 (330)
T ss_pred             CCCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeCCC-----hhhHH
Confidence            345677666  23334433    35566777899998876532 221       2223589999997632     11111


Q ss_pred             HHHHHh-CCCCCEEEE
Q 032797           89 QTVLEL-GPTVPLFGV  103 (133)
Q Consensus        89 ~~i~~~-~~~~PvLGI  103 (133)
                      +.+..+ +.++|++-+
T Consensus        97 ~~l~~~~~~~iPvV~i  112 (330)
T PRK10355         97 NVIKEAKQEGIKVLAY  112 (330)
T ss_pred             HHHHHHHHCCCeEEEE
Confidence            233333 456777766

>PRK09267 flavodoxin FldA; Validated

Probab=81.83  E-value=16  Score=25.95  Aligned_cols=79  Identities=10%  Similarity=-0.001  Sum_probs=42.0

Q ss_pred             CeEEEE-ECCCCchHHHHHHHHh-C-CCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-CcCC-chHHHHHHHH---h-C
Q 032797           25 NPIIVI-DNYDSFTYNLCQYMGE-L-GYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQD-SGISLQTVLE---L-G   95 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~~~l~~-~-G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~~d-~~~~~~~i~~---~-~   95 (133)
                      |+|+|+ ....+.+..+.+.+.+ . +.++++.+..+.+..++.  ++|.||+ |.|- .... ...+.+++..   . -
T Consensus         2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~--~~d~vi~-g~pt~~~G~~~~~~~~fl~~~~~~~l   78 (169)
T PRK09267          2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFE--AYDLLIL-GIPTWGYGELQCDWDDFLPELEEIDF   78 (169)
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHh--hCCEEEE-EecCcCCCCCCHHHHHHHHHHhcCCC
Confidence            467666 4455677777777655 2 234566655433344454  7999988 4332 1111 1223334443   2 2


Q ss_pred             CCCCEEEEech
Q 032797           96 PTVPLFGVCMG  106 (133)
Q Consensus        96 ~~~PvLGIClG  106 (133)
                      .++|+.-+..|
T Consensus        79 ~~k~vaifg~g   89 (169)
T PRK09267         79 SGKKVALFGLG   89 (169)
T ss_pred             CCCEEEEEecC
Confidence            46777666654

>PRK03670 competence damage-inducible protein A; Provisional

Probab=81.68  E-value=13  Score=28.99  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=27.8

Q ss_pred             CchHHHHHHHHhCCCeEEEEeC--CCCC--HHHHc---cCCCCEEEECCCCC
Q 032797           35 SFTYNLCQYMGELGYHFEVYRN--DELT--VEELK---RKNPRGVLISPGPG   79 (133)
Q Consensus        35 ~~~~~i~~~l~~~G~~~~v~~~--~~~~--~~~l~---~~~~DgvIl~GG~~   79 (133)
                      .+...+.+.|++.|+++..+..  |+..  .+.+.   ...+|.||++||-|
T Consensus        20 tN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG   71 (252)
T PRK03670         20 SNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG   71 (252)
T ss_pred             hhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence            4455688889999998764432  2111  11121   22589999999966

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=81.61  E-value=11  Score=28.00  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=34.6

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797           39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI  103 (133)
                      .+.+.+++.|+.+.+...+...      .+.+....+||+|+.+..  +.+.....+.+.++ ..++|+.-+
T Consensus        20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~~~~~~i~~~~~~~ipvV~i   89 (273)
T cd06292          20 AIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSL--HADTHADHSHYERLAERGLPVVLV   89 (273)
T ss_pred             HHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC--CCcccchhHHHHHHHhCCCCEEEE
Confidence            4566777789998876643111      112334589999997632  22222122334433 456777665

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional

Probab=81.46  E-value=7  Score=29.23  Aligned_cols=50  Identities=16%  Similarity=0.142  Sum_probs=27.2

Q ss_pred             CchHHHHHHHHhCCCe---E--EEEeCCCCCH-HHH---cc-CCCCEEEECCCCC-CcCCc
Q 032797           35 SFTYNLCQYMGELGYH---F--EVYRNDELTV-EEL---KR-KNPRGVLISPGPG-APQDS   84 (133)
Q Consensus        35 ~~~~~i~~~l~~~G~~---~--~v~~~~~~~~-~~l---~~-~~~DgvIl~GG~~-~~~d~   84 (133)
                      .....+.+.|++.|++   +  .+++.+.... +.+   .. .++|.||.+||-+ ++.|.
T Consensus        23 ~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDv   83 (193)
T PRK09417         23 KGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDV   83 (193)
T ss_pred             chHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCc
Confidence            3445678889888643   2  2333221111 112   11 2699999999976 44443

>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=81.24  E-value=12  Score=29.35  Aligned_cols=64  Identities=19%  Similarity=0.124  Sum_probs=41.7

Q ss_pred             eEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-C-CCCC
Q 032797           26 PIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G-PTVP   99 (133)
Q Consensus        26 ~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~-~~~P   99 (133)
                      ++.++-+......    .+.++|++.|+++..-         .  .++|.+|.-||-|      .++...+.+ . .++|
T Consensus         4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~---------~--~~~D~vi~lGGDG------T~L~a~~~~~~~~~~p   66 (264)
T PRK03501          4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH---------P--KNANIIVSIGGDG------TFLQAVRKTGFREDCL   66 (264)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC---------C--CCccEEEEECCcH------HHHHHHHHhcccCCCe
Confidence            6777766444222    2556788888866521         1  2579999999844      355666664 3 3789


Q ss_pred             EEEEec-h
Q 032797          100 LFGVCM-G  106 (133)
Q Consensus       100 vLGICl-G  106 (133)
                      ++||=. |
T Consensus        67 ilgIn~~G   74 (264)
T PRK03501         67 YAGISTKD   74 (264)
T ss_pred             EEeEecCC
Confidence            999999 6

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=80.70  E-value=7.8  Score=28.82  Aligned_cols=37  Identities=16%  Similarity=0.168  Sum_probs=23.6

Q ss_pred             HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797           40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG   77 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG   77 (133)
                      +.+.+++.|+++.+.... .+.+       .+...++||+|+.++
T Consensus        21 i~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~~~~vdgii~~~~   64 (273)
T cd06305          21 TKAEAEALGGDLRVYDAG-GDDAKQADQIDQAIAQKVDAIIIQHG   64 (273)
T ss_pred             HHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence            556777889998887542 2221       122347999999653

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>PRK10766 DNA-binding transcriptional regulator TorR; Provisional

Probab=80.62  E-value=15  Score=26.37  Aligned_cols=78  Identities=17%  Similarity=0.212  Sum_probs=43.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      .++|++++........+...|+..|+.+............+....+|.+++.-.  .|...+ ...+.++.. ...|++.
T Consensus         2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~-~~~~ii~   78 (221)
T PRK10766          2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDIN--LPGEDGLMLTRELRSR-STVGIIL   78 (221)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhC-CCCCEEE
Confidence            468999987656666677888888887654432111112233346898888432  122222 233444442 4578877


Q ss_pred             Ee
Q 032797          103 VC  104 (133)
Q Consensus       103 IC  104 (133)
                      +.
T Consensus        79 l~   80 (221)
T PRK10766         79 VT   80 (221)
T ss_pred             EE
Confidence            64

>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional

Probab=80.51  E-value=20  Score=26.33  Aligned_cols=32  Identities=13%  Similarity=0.122  Sum_probs=19.4

Q ss_pred             CeEEEEEC-CCCchHHHHH----HHHh-CCCeEEEEeC
Q 032797           25 NPIIVIDN-YDSFTYNLCQ----YMGE-LGYHFEVYRN   56 (133)
Q Consensus        25 ~~i~vid~-~~~~~~~i~~----~l~~-~G~~~~v~~~   56 (133)
                      ++|+||-+ ..+.+..+.+    .+++ .|+++++++.
T Consensus         2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l   39 (200)
T PRK03767          2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV   39 (200)
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence            47777743 2344554444    4555 7888888765

>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin

Probab=80.43  E-value=0.34  Score=27.31  Aligned_cols=17  Identities=35%  Similarity=0.520  Sum_probs=11.6

Q ss_pred             CEEEEechHHHHHHHhC
Q 032797           99 PLFGVCMGLQCIGEAFG  115 (133)
Q Consensus        99 PvLGIClG~QlLa~a~G  115 (133)
                      -..|-|+|.|+|..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T PF09075_consen   31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SS--TTTTTHHHHTTT-
T ss_pred             Cccccccchhhhhhccc
Confidence            35789999999987755

The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.

>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity

Probab=80.21  E-value=2.8  Score=29.28  Aligned_cols=43  Identities=28%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             CCchHHHHHHHHhCCCeEEE---EeCCCCCHHHHc----c--CCCCEEEECCCCC
Q 032797           34 DSFTYNLCQYMGELGYHFEV---YRNDELTVEELK----R--KNPRGVLISPGPG   79 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v---~~~~~~~~~~l~----~--~~~DgvIl~GG~~   79 (133)
                      |++...+.++|++.|+++..   ++.+   .+++.    .  .+.|.||.+||-+
T Consensus        16 d~n~~~l~~~l~~~G~~v~~~~~v~Dd---~~~i~~~l~~~~~~~D~VittGG~g   67 (144)
T PF00994_consen   16 DSNGPFLAALLEELGIEVIRYGIVPDD---PDAIKEALRRALDRADLVITTGGTG   67 (144)
T ss_dssp             BHHHHHHHHHHHHTTEEEEEEEEEESS---HHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             EhHHHHHHHHHHHcCCeeeEEEEECCC---HHHHHHHHHhhhccCCEEEEcCCcC
Confidence            34556688899999997753   3332   23221    1  2679999999976

The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....

>PRK15479 transcriptional regulatory protein TctD; Provisional

Probab=80.20  E-value=15  Score=26.10  Aligned_cols=78  Identities=13%  Similarity=0.151  Sum_probs=43.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      ++|+++|........+.+.+...|+.+............+....+|.+++.-.  .+...+ ...+.++......|++-+
T Consensus         1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~vild~~--~~~~~~~~~~~~i~~~~~~~~ii~l   78 (221)
T PRK15479          1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDIN--MPGMDGLEVLQRLRKRGQTLPVLLL   78 (221)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCcHHHHHHHHHhcCCCCCEEEE
Confidence            47899987666667788888888876654322111111223346898887322  122222 233444444446788776


Q ss_pred             e
Q 032797          104 C  104 (133)
Q Consensus       104 C  104 (133)
                      +
T Consensus        79 t   79 (221)
T PRK15479         79 T   79 (221)
T ss_pred             E
Confidence            5

>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]

Probab=80.14  E-value=12  Score=29.41  Aligned_cols=45  Identities=16%  Similarity=0.156  Sum_probs=29.5

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cCCCCEEEECCCCC
Q 032797           35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG   79 (133)
Q Consensus        35 ~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~   79 (133)
                      .+...+.+.|.+.|+++.-...-..+.+++.      ..++|-||++||-|
T Consensus        21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG   71 (255)
T COG1058          21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG   71 (255)
T ss_pred             chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence            4555688999999998764432111223221      13699999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
1qdl_B	195	The Crystal Structure Of Anthranilate Synthase From		2e-21
1i7q_B	193	Anthranilate Synthase From S. Marcescens Length = 1		1e-13
1i1q_B	192	Structure Of The Cooperative Allosteric Anthranilat		7e-12
1gpm_A	525	Escherichia Coli Gmp Synthetase Complexed With Amp		1e-06
1wl8_A	189	Crystal Structure Of Ph1346 Protein From Pyrococcus		1e-05
2d7j_A	209	Crystal Structure Analysis Of Glutamine Amidotransf		1e-05
1t36_B	382	Crystal Structure Of E. Coli Carbamoyl Phosphate Sy		6e-05
1m6v_B	382	Crystal Structure Of The G359f (Small Subunit) Poin		2e-04
1jdb_C	382	Carbamoyl Phosphate Synthetase From Escherichia Col		2e-04

>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From Sulfolobus Solfataricus Length = 195

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 28  IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QDS 84
           ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPG P   +D 
Sbjct: 5   LIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDI 64
Query: 85  GISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCVL 133
           G+SL  +  LG   P+ GVC+G Q IG AFG     A      K S ++
Sbjct: 65  GVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNII 113

>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens Length = 193

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFTYNL   +   G+   +YRN    E+ +E L+      +++SPGPG P +
Sbjct: 4   ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 63
Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           +G   + +  L   +P+ G+C+G Q I EA+G
Sbjct: 64  AGCMPELLQRLRGQLPIIGICLGHQAIVEAYG 95

>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate Synthase From Salmonella Typhimurium Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKR-KNPRGVLISPGPGAPQ 82
           I+++DN DSFT+NL   +   G++  +YRN    +  ++ L   KNP  +++SPGPG P 
Sbjct: 3   ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPV-LMLSPGPGVPS 61
Query: 83  DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           ++G   + +  L   +P+ G+C+G Q I EA+G
Sbjct: 62  EAGCMPELLTRLRGKLPIIGICLGHQAIVEAYG 94

>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 23  NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP- 81
           +K+ I+++D    +T  + + + ELG + E++  D +T  +++  NP G+++S GP +  
Sbjct: 6   HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTT 64
Query: 82  -QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
            ++S  + Q V E G  VP+FGVC G+Q +    G
Sbjct: 65  EENSPRAPQYVFEAG--VPVFGVCYGMQTMAMQLG 97

>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus Horikoshii Length = 189

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++DN   + + + + +  LG   ++  N    +EE+K  NP+G++ S GP   +++G 
Sbjct: 3   IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 59
Query: 87  SLQTVLELGP--TVPLFGVCMGLQCIGEAFG 115
           + + VLE      VP+ G+C+G Q I + FG
Sbjct: 60  NCEKVLEHYDEFNVPILGICLGHQLIAKFFG 90

>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase From Pyrococcus Horikoshii Ot3 Length = 209

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++DN   + + + + +  LG   ++  N    +EE+K  NP+G++ S GP   +++G 
Sbjct: 23  IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 79
Query: 87  SLQTVLELGP--TVPLFGVCMGLQCIGEAFG 115
           + + VLE      VP+ G+C+G Q I + FG
Sbjct: 80  NCEKVLEHYDEFNVPILGICLGHQLIAKFFG 110

>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'-Monophosphate Length = 382

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPDDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 G 115
           G
Sbjct: 280 G 280

>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase Length = 382

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 G 115
           G
Sbjct: 280 G 280

>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 G 115
           G
Sbjct: 280 G 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	2e-51
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	1e-50
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	2e-19
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	3e-11
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	8e-09
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	1e-08
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	2e-08
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	3e-08
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	4e-08
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	4e-08
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	8e-08
3uow_A	556	GMP synthetase; structural genomics consortium, SG	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2a9v_A	212	GMP synthase; structural genomics, joint center fo	4e-04

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195

 Score =  160 bits (407), Expect = 2e-51
 Identities = 45/92 (48%), Positives = 64/92 (69%), Gaps = 3/92 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QD 83
            ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPG P   +D
Sbjct: 4   TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRED 63

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
            G+SL  +  LG   P+ GVC+G Q IG AFG
Sbjct: 64  IGVSLDVIKYLGKRTPILGVCLGHQAIGYAFG 95

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192

 Score =  158 bits (402), Expect = 1e-50
 Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFT+NL   +   G++  +YRN    +  ++ L       +++SPGPG P +
Sbjct: 3   ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE 62

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           +G   + +  L   +P+ G+C+G Q I EA+G
Sbjct: 63  AGCMPELLTRLRGKLPIIGICLGHQAIVEAYG 94

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645

 Score = 81.8 bits (202), Expect = 2e-19
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
            +++D  D FT  + Q +  LG   EV    +     +       V++ PGPG P D+G 
Sbjct: 449 ALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDLARYDVVVMGPGPGDPSDAGD 504

Query: 87  SLQTVLE------LGPTVPLFGVCMGLQCIGEAFG 115
                L       +    P   VC+  Q +    G
Sbjct: 505 PRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILG 539

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315

 Score = 58.1 bits (140), Expect = 3e-11
 Identities = 17/115 (14%), Positives = 29/115 (25%), Gaps = 22/115 (19%)

Query: 23  NKNPII-----VIDNYDSFTYNL-------CQYMGELGYHFEVYRNDELTVEELKRKNPR 70
            K PII        N     Y          +Y+   G      R D    +        
Sbjct: 28  AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSI 87

Query: 71  GVLISPGPGAPQDSGISLQTV----------LELGPTVPLFGVCMGLQCIGEAFG 115
             ++ PG           +             + G   P++G C+G + +     
Sbjct: 88  NGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLIS 142

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 29/120 (24%)

Query: 10  SKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQY-------MGELGYHFEVYRNDELTVE 62
           +++LY       + +  ++++D   +      QY       + EL    E++  +     
Sbjct: 15  TENLYFQSMGHHHYEGAVVILD-AGA------QYGKVIDRRVRELFVQSEIFPLE-TPAF 66

Query: 63  ELKRKNPRGVLISPGP------GAPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
            +K +  R ++IS GP       AP  D  I       +G   P+ G+C G+Q + + FG
Sbjct: 67  AIKEQGFRAIIISGGPNSVYAEDAPWFDPAI-----FTIG--KPVLGICYGMQMMNKVFG 119

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 13/76 (17%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           EL     +   D   +EE+ +  P+ +++S GP       AP+        +   G  +P
Sbjct: 21  ELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAPRPD----PRLFSSG--LP 73

Query: 100 LFGVCMGLQCIGEAFG 115
           L G+C G+Q + +  G
Sbjct: 74  LLGICYGMQLLAQELG 89

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           EL    E++  +      +K +  R ++IS GP       AP         +  +G   P
Sbjct: 46  ELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFD----PAIFTIG--KP 98

Query: 100 LFGVCMGLQCIGEAFG 115
           + G+C G+Q + + FG
Sbjct: 99  VLGICYGMQMMNKVFG 114

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 13/76 (17%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           E+G + E+   D +  E ++  NP G+++S GP         +        + E+G   P
Sbjct: 32  EIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTLRAP----AFIFEIG--CP 84

Query: 100 LFGVCMGLQCIGEAFG 115
           + G+C G+Q +    G
Sbjct: 85  VLGICYGMQTMAYQLG 100

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 5/59 (8%)

Query: 60  TVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A G
Sbjct: 223 SAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETD--IPVFGICLGHQLLALASG 279

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 13/76 (17%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
            LG   ++  N    +EE+K  NP+G++ S GP         +      +   E    VP
Sbjct: 22  YLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSLENTGNCEKVL----EHYDEFN--VP 74

Query: 100 LFGVCMGLQCIGEAFG 115
           + G+C+G Q I + FG
Sbjct: 75  ILGICLGHQLIAKFFG 90

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525

 Score = 48.6 bits (117), Expect = 8e-08
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 13/76 (17%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           ELG + E++  D +T  +++  NP G+++S GP       +P+      Q V E G  VP
Sbjct: 29  ELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAP----QYVFEAG--VP 81

Query: 100 LFGVCMGLQCIGEAFG 115
           +FGVC G+Q +    G
Sbjct: 82  VFGVCYGMQTMAMQLG 97

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 27/111 (24%)

Query: 20  SKNNKNPIIVIDNYDSFTYNLCQY-------MGELGYHFEVYRNDELTVEELKRKNPRGV 72
                + I+V++ + S      QY       +  +    E      + ++++K  N +GV
Sbjct: 3   EGEEYDKILVLN-FGS------QYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGV 54

Query: 73  LISPGP------GAPQDSGISLQTVLELGPT--VPLFGVCMGLQCIGEAFG 115
           ++S GP      G+P       + V E      +P+FG+C G+Q I     
Sbjct: 55  ILSGGPYSVTEAGSPHLK----KEVFEYFLEKKIPIFGICYGMQEIAVQMN 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 24/90 (26%)

Query: 14  YLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEE---------L 64
           Y   K   ++      +D Y  +++        +G+H +   + E              L
Sbjct: 453 YNIPKTFDSDDLIPPYLDQY-FYSH--------IGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 65  KRKNPRGVLISPGPGAPQDSGISLQTVLEL 94
           ++K     +      A   SG  L T+ +L
Sbjct: 504 EQK-----IRHDST-AWNASGSILNTLQQL 527

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 17/78 (21%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP--------GAPQDSGISLQTVLELGPT 97
           ELG   ++  ND +   EL      G+++S G                   + + +    
Sbjct: 35  ELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVG----KYIDDHN-- 85

Query: 98  VPLFGVCMGLQCIGEAFG 115
            P+ G+C+G Q I   FG
Sbjct: 86  YPILGICVGAQFIALHFG 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.92
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.92
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.92
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.91
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.88
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	99.88
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.88
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.87
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.87
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.87
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.87
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.83
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.83
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.83
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.81
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.8
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.74
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.71
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.7
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	99.69
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.69
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.67
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.67
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	99.64
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.63
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	99.63
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	99.62
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.6
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.57
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.57
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	99.54
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.51
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.49
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	99.48
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	99.46
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	99.02
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	98.95
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	98.93
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	98.92
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	98.78
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	98.75
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	98.63
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	98.63
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	98.62
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	98.61
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	98.59
2fex_A	188	Conserved hypothetical protein; structural genomic	98.49
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	98.44
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	98.43
1u9c_A	224	APC35852; structural genomics, protein structure i	98.42
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	98.41
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	98.41
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	98.39
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	98.29
3n7t_A	247	Macrophage binding protein; seattle structural gen	98.28
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.27
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.27
3gra_A	202	Transcriptional regulator, ARAC family; transcript	98.25
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	98.24
3er6_A	209	Putative transcriptional regulator protein; struct	98.21
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	98.15
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	98.14
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	98.12
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	98.08
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	98.07
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	98.05
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	97.98
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	97.89
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	97.76
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	97.59
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	95.73
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	95.62
1z0s_A	278	Probable inorganic polyphosphate/ATP-NAD kinase; A	95.53
3grc_A	140	Sensor protein, kinase; protein structure initiati	95.42
2rdm_A	132	Response regulator receiver protein; structural ge	95.15
3snk_A	135	Response regulator CHEY-like protein; P-loop conta	95.05
3gt7_A	154	Sensor protein; structural genomics, signal receiv	94.76
2qxy_A	142	Response regulator; regulation of transcription, N	94.74
2rjn_A	154	Response regulator receiver:metal-dependent phosph	94.68
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	94.52
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	94.46
2qr3_A	140	Two-component system response regulator; structura	94.41
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	94.27
2zay_A	147	Response regulator receiver protein; structural ge	94.27
3h5i_A	140	Response regulator/sensory box protein/ggdef domai	94.2
2j48_A	119	Two-component sensor kinase; pseudo-receiver, circ	94.19
2pln_A	137	HP1043, response regulator; signaling protein; 1.8	94.06
3jte_A	143	Response regulator receiver protein; structural ge	94.0
3i42_A	127	Response regulator receiver domain protein (CHEY-	93.94
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	93.8
3cz5_A	153	Two-component response regulator, LUXR family; str	93.8
2an1_A	292	Putative kinase; structural genomics, PSI, protein	93.76
3f6c_A	134	Positive transcription regulator EVGA; structural	93.69
3cnb_A	143	DNA-binding response regulator, MERR family; signa	93.67
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	93.55
3hdg_A	137	Uncharacterized protein; two-component sensor acti	93.51
3cg0_A	140	Response regulator receiver modulated diguanylate	93.5
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	93.36
2gkg_A	127	Response regulator homolog; social motility, recei	93.28
1k68_A	140	Phytochrome response regulator RCPA; phosphorylate	93.28
3rfq_A	185	Pterin-4-alpha-carbinolamine dehydratase MOAB2; st	93.15
1u0t_A	307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	93.02
3lte_A	132	Response regulator; structural genomics, PSI, prot	93.0
3kto_A	136	Response regulator receiver protein; PSI-II,struct	92.98
3hdv_A	136	Response regulator; PSI-II, structural genomics, P	92.75
2b4a_A	138	BH3024; flavodoxin-like fold, structural genomics,	92.68
1mvo_A	136	PHOP response regulator; phosphate regulon, transc	92.5
2ayx_A	254	Sensor kinase protein RCSC; two independent struct	92.41
3r0j_A	250	Possible two component system response transcript	92.4
2pl1_A	121	Transcriptional regulatory protein PHOP; CHEY-like	92.39
3lua_A	140	Response regulator receiver protein; two-component	92.39
2i2c_A	272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	92.35
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	92.29
4dad_A	146	Putative pilus assembly-related protein; response	92.26
3a10_A	116	Response regulator; phosphoacceptor, signaling pro	92.16
1dbw_A	126	Transcriptional regulatory protein FIXJ; doubly wo	91.99
1kgs_A	225	DRRD, DNA binding response regulator D; DNA-bindin	91.97
3nhm_A	133	Response regulator; protein structure initiative I	91.83
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	91.81
3f6p_A	120	Transcriptional regulatory protein YYCF; unphospho	91.75
2r47_A	157	Uncharacterized protein MTH_862; unknown function,	91.72
1srr_A	124	SPO0F, sporulation response regulatory protein; as	91.67
3crn_A	132	Response regulator receiver domain protein, CHEY-;	91.6
2qv7_A	337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	91.57
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	91.2
2qvg_A	143	Two component response regulator; NYSGXRC, PSI-2,	91.14
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	91.05
2g2c_A	167	Putative molybdenum cofactor biosynthesis protein;	90.67
3rqi_A	184	Response regulator protein; structural genomics, s	90.65
2qsj_A	154	DNA-binding response regulator, LUXR family; struc	90.52
1ys7_A	233	Transcriptional regulatory protein PRRA; response	90.48
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	90.43
2ark_A	188	Flavodoxin; FMN, structural genomics, PSI, structu	90.4
3eul_A	152	Possible nitrate/nitrite response transcriptional	90.39
3t6k_A	136	Response regulator receiver; flavodoxin-like, stru	90.28
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	90.26
3pzy_A	164	MOG; ssgcid, seattle structural genomics center fo	90.21
2gwr_A	238	DNA-binding response regulator MTRA; two-component	90.07
3cfy_A	137	Putative LUXO repressor protein; structural genomi	90.06
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	90.0
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	89.94
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	89.86
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	89.74
1yio_A	208	Response regulatory protein; transcription regulat	89.64
2is8_A	164	Molybdopterin biosynthesis enzyme, MOAB; globular	89.61
1zgz_A	122	Torcad operon transcriptional regulatory protein;	89.54
3heb_A	152	Response regulator receiver domain protein (CHEY);	89.24
2gk3_A	256	Putative cytoplasmic protein; STM3548, structural	89.23
1xhf_A	123	DYE resistance, aerobic respiration control protei	88.97
3hly_A	161	Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein	88.91
3ilh_A	146	Two component response regulator; NYSGXRC, PSI-II,	88.69
1jbe_A	128	Chemotaxis protein CHEY; signaling protein; 1.08A	88.68
3mm4_A	206	Histidine kinase homolog; receiver domain, CKI1, c	88.53
2pbq_A	178	Molybdenum cofactor biosynthesis MOG; molybdopteri	88.21
3c3m_A	138	Response regulator receiver protein; structural ge	87.96
2lpm_A	123	Two-component response regulator; transcription re	87.92
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	87.88
3pfn_A	365	NAD kinase; structural genomics consortium, SNP, S	87.71
2zki_A	199	199AA long hypothetical Trp repressor binding prot	87.41
2qv0_A	143	Protein MRKE; structural genomics, transcription,	87.37
1t0b_A	252	THUA-like protein; trehalose metabolism, NCS symme	87.34
3q9s_A	249	DNA-binding response regulator; DNA binding protei	87.24
1ydg_A	211	Trp repressor binding protein WRBA; tetramer, stru	87.21
3m6m_D	143	Sensory/regulatory protein RPFC; RPFF, REC, enoyl-	87.02
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	86.77
2a5l_A	200	Trp repressor binding protein WRBA; APC5760, PA094	86.74
2pjk_A	178	178AA long hypothetical molybdenum cofactor biosyn	86.24
3eqz_A	135	Response regulator; structural genomics, unknown f	86.14
2hqr_A	223	Putative transcriptional regulator; phosporylation	86.12
2a9o_A	120	Response regulator; essential protein, YYCF/YYCG h	86.03
3n53_A	140	Response regulator receiver modulated diguanylate;	85.96
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	85.91
1uuy_A	167	CNX1, molybdopterin biosynthesis CNX1; chelatase,	85.89
1di6_A	195	MOGA, molybdenum cofactor biosynthetic enzyme; MOC	85.77
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	85.72
4e5v_A	281	Putative THUA-like protein; THUA-like proteins, tr	85.68
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	85.36
1rtt_A	193	Conserved hypothetical protein; protein structure	85.18
2jba_A	127	Phosphate regulon transcriptional regulatory PROT;	85.14
1jlj_A	189	Gephyrin; globular alpha/beta fold, structural pro	85.03
2oqr_A	230	Sensory transduction protein REGX3; response regul	84.52
3c97_A	140	Signal transduction histidine kinase; structural g	84.36
2fz5_A	137	Flavodoxin; alpha/beta doubly-wound topology, non-	84.25
3fni_A	159	Putative diflavin flavoprotein A 3; alpha-beta pro	83.43
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	83.33
5nul_A	138	Flavodoxin; electron transport, flavoprotein, FMN;	83.16
1f4p_A	147	Flavodoxin; electron transport, flavoprotein, FMN,	83.1
3eq2_A	394	Probable two-component response regulator; adaptor	83.0
3k4h_A	292	Putative transcriptional regulator; structural gen	82.99
3h1g_A	129	Chemotaxis protein CHEY homolog; sulfate-bound CHE	82.83
2qzj_A	136	Two-component response regulator; 11017X, PSI-II,	82.76
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	82.61
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	82.16
2rgy_A	290	Transcriptional regulator, LACI family; 11011J, NY	82.14
1dc7_A	124	NTRC, nitrogen regulation protein; receiver domain	82.0
3s40_A	304	Diacylglycerol kinase; structural genomics, the ce	81.99
3b6i_A	198	Flavoprotein WRBA; flavoproteins, NADH:quinone oxi	81.77
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	81.72
1p6q_A	129	CHEY2; chemotaxis, signal transduction, response r	81.62
2q62_A	247	ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi	81.59
3cs3_A	277	Sugar-binding transcriptional regulator, LACI FAM;	81.26
3f6r_A	148	Flavodoxin; FMN binding, oxidized, electron transp	81.12
1s8n_A	205	Putative antiterminator; RV1626, structural genomi	81.02
3kke_A	303	LACI family transcriptional regulator; structural	80.96
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	80.95
2vzf_A	197	NADH-dependent FMN reductase; oxidoreductase; 2.50	80.66
3clk_A	290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	80.55
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	80.36
1mb3_A	124	Cell division response regulator DIVK; signal tran	80.24
3qvl_A	245	Putative hydantoin racemase; isomerase; HET: 5HY;	80.18
1ehs_A	48	STB, heat-stable enterotoxin B; disulfide; NMR {Es	80.14
3egc_A	291	Putative ribose operon repressor; structural genom	80.02

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.92  E-value=1.1e-24  Score=160.78  Aligned_cols=103  Identities=44%  Similarity=0.759  Sum_probs=86.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch---HHHHHHHHhCCCCCEEEE
Q 032797           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG---ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~---~~~~~i~~~~~~~PvLGI  103 (133)
                      |+||||+++|+.++.++|++.|+++++++.++.+.+++...++||+||+||++++.+..   ...+++++++.++|+|||
T Consensus         4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGI   83 (195)
T 1qdl_B            4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGV   83 (195)
T ss_dssp             EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEE
T ss_pred             EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEE
Confidence            99999999999999999999999999999764455566534799999999999988742   234777777778999999


Q ss_pred             echHHHHHHHhCCeeeeccCCcceee
Q 032797          104 CMGLQCIGEAFGDCAFSAWCHAWKKF  129 (133)
Q Consensus       104 ClG~QlLa~a~GG~v~~~~~~~~g~~  129 (133)
                      |+|||+|+.++||++.+.+...+|..
T Consensus        84 C~G~QlL~~~~gg~v~~~~~~~~g~~  109 (195)
T 1qdl_B           84 CLGHQAIGYAFGAKIRRARKVFHGKI  109 (195)
T ss_dssp             THHHHHHHHHTTCEEEEEEEEEEEEE
T ss_pred             ehHHHHHHHHhCCEEeccCCCcCCCc
Confidence            99999999999999998765555644

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.92  E-value=3.9e-24  Score=156.64  Aligned_cols=105  Identities=24%  Similarity=0.436  Sum_probs=89.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI  103 (133)
                      |||+|||++++|+.++.++|++.|+++++++.+. +.+++...++||+||+||+ ++.+.....++++++ +.++|+|||
T Consensus         1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGI   78 (189)
T 1wl8_A            1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGI   78 (189)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEE
T ss_pred             CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEE
Confidence            5799999999999999999999999999998763 5556654479999999999 777655557788875 788999999


Q ss_pred             echHHHHHHHhCCeeeeccCCcceeeee
Q 032797          104 CMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       104 ClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      |+|||+|+.++||++.+.+..++|+.++
T Consensus        79 C~G~Q~l~~~~gg~v~~~~~~~~G~~~~  106 (189)
T 1wl8_A           79 CLGHQLIAKFFGGKVGRGEKAEYSLVEI  106 (189)
T ss_dssp             THHHHHHHHHHTCEEEECSCCSCEEEEE
T ss_pred             cHHHHHHHHHhCCceecCCCcccCceeE
Confidence            9999999999999999977666776654

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.92  E-value=1.5e-24  Score=159.57  Aligned_cols=106  Identities=31%  Similarity=0.548  Sum_probs=84.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc----CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~----~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (133)
                      +||+||||++||++++.++|++.|+++++++++ .+.+++..    .+.+++|++|||+++.+.+...++++.+++++|+
T Consensus         1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~Pi   79 (192)
T 1i1q_B            1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPI   79 (192)
T ss_dssp             CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCE
T ss_pred             CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCE
Confidence            489999999999999999999999999999876 33344421    2456799999999998766555666666778999


Q ss_pred             EEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797          101 FGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       101 LGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      ||||+|||+|+.++||++.+.+..++|+++.
T Consensus        80 lGIC~G~Qll~~~~Gg~v~~~~~~~~g~~~~  110 (192)
T 1i1q_B           80 IGICLGHQAIVEAYGGYVGQAGEILHGKATS  110 (192)
T ss_dssp             EEETHHHHHHHHHTSCCCCC---CCSSEEEE
T ss_pred             EEECcChHHHHHHhCCEEEeCCCcEecceeE
Confidence            9999999999999999998876667777653

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.91  E-value=3.2e-24  Score=182.91  Aligned_cols=122  Identities=20%  Similarity=0.287  Sum_probs=99.2

Q ss_pred             ccccccccc--cccc-------cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797            7 VPISKSLYL--DDKK-------SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG   77 (133)
Q Consensus         7 ~~~~~~~~~--~~~~-------~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG   77 (133)
                      .++|.||+.  +...       ....+++|+|||++++|++++.+++++.|+++++++++..  .+.  .++|+|||+||
T Consensus       420 ~~~~~~w~~~~~~~~~~~~~~~~~~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~--~~~--~~~DgIIlsGG  495 (645)
T 3r75_A          420 EGIADFWFRPYGGRQGEMADELAELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA--VDL--ARYDVVVMGPG  495 (645)
T ss_dssp             TTSCSGGGSCSSCC--------CCSTTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC--CCG--GGCSEEEECCC
T ss_pred             cccchhhhcccccccccccccccCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc--ccc--cCCCEEEECCC
Confidence            468999997  4332       2346789999999999999999999999999999998632  122  37999999999


Q ss_pred             CCCcCCchH-----HHHHHHHh-CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797           78 PGAPQDSGI-----SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus        78 ~~~~~d~~~-----~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      |++|++.+.     ..++|+++ +.++|+||||+|||+|+.++||+|.+.+...+|+.+.+
T Consensus       496 Pg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~~~~G~~~~i  556 (645)
T 3r75_A          496 PGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQGIQVEI  556 (645)
T ss_dssp             SSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEE
T ss_pred             CCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCCcccccceEE
Confidence            999988762     34567763 67899999999999999999999999887777776543

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.88  E-value=3.5e-23  Score=154.86  Aligned_cols=107  Identities=24%  Similarity=0.323  Sum_probs=84.9

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC-CCCcCCchHHHHHHHH-hCCCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG-PGAPQDSGISLQTVLE-LGPTVP   99 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG-~~~~~d~~~~~~~i~~-~~~~~P   99 (133)
                      -..+||+++|++++|+.++.++|+++|+++++++++. +.+++.  ++|||||+|| |+++++......+.+. .+.++|
T Consensus        11 ~~~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~P   87 (212)
T 2a9v_A           11 HHMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-DSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYP   87 (212)
T ss_dssp             CCCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS-CGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSC
T ss_pred             cccceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC-CHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHHhCCCC
Confidence            3457999999999999999999999999999998753 455554  5999999999 8988875221112222 256899


Q ss_pred             EEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797          100 LFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       100 vLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      +||||+|||+|+.++||++.+.+..++|+..+
T Consensus        88 iLGIC~G~Qll~~~lGg~v~~~~~~~~G~~~v  119 (212)
T 2a9v_A           88 ILGICVGAQFIALHFGASVVKAKHPEFGKTKV  119 (212)
T ss_dssp             EEEETHHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred             EEEEChHHHHHHHHhCCEEEcCCCcccCceee
Confidence            99999999999999999999876666666543

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=99.88  E-value=2.8e-22  Score=161.82  Aligned_cols=102  Identities=20%  Similarity=0.422  Sum_probs=86.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG  102 (133)
                      .++|+++|+  +..+++.++|+++|++++++|++ .+.+++...++|||||+|||++|.+.....++++++ +.++|+||
T Consensus       190 ~~~V~viD~--G~k~ni~r~L~~~G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILG  266 (379)
T 1a9x_B          190 PFHVVAYDF--GAKRNILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFG  266 (379)
T ss_dssp             CEEEEEEES--SCCHHHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEE
T ss_pred             CCEEEEEEC--CChHHHHHHHHHCCCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEE
Confidence            468999999  56688999999999999999986 456677655799999999999999877777888885 67899999


Q ss_pred             EechHHHHHHHhCCeeeeccCCccee
Q 032797          103 VCMGLQCIGEAFGDCAFSAWCHAWKK  128 (133)
Q Consensus       103 IClG~QlLa~a~GG~v~~~~~~~~g~  128 (133)
                      ||+|||+|+.++||++.+.+...+|.
T Consensus       267 IClG~QLLa~A~GG~v~k~~~gh~g~  292 (379)
T 1a9x_B          267 ICLGHQLLALASGAKTVKMKFGHHGG  292 (379)
T ss_dssp             ETHHHHHHHHHTTCCEEEEEEEEEEE
T ss_pred             ECchHHHHHHHhCcEEEecccccccC
Confidence            99999999999999999886433443

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.88  E-value=6.2e-23  Score=171.46  Aligned_cols=106  Identities=19%  Similarity=0.336  Sum_probs=78.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG  102 (133)
                      ..+|+|||++++|++++.++|++.|+.++++|++ .+.+++...++|||||+|||+++++.+.. ...+. ++.++|+||
T Consensus        10 ~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~-~~~~~~~~~~~PvLG   87 (527)
T 3tqi_A           10 QHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTL-RAPAFIFEIGCPVLG   87 (527)
T ss_dssp             CSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT-CCSSSSTTTCCSEEEECCCCC----------CCCSTTTSSSCEEE
T ss_pred             CCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCCh-hhHHHHHhcCCCEEE
Confidence            4689999999999999999999999999999875 44555654578999999999998865432 22233 377999999


Q ss_pred             EechHHHHHHHhCCeeeeccCCcceeeee
Q 032797          103 VCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       103 IClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      ||+|||+|+.++||+|.+.+..++|+..+
T Consensus        88 IC~G~Qlla~~lGG~V~~~~~~e~G~~~v  116 (527)
T 3tqi_A           88 ICYGMQTMAYQLGGKVNRTAKAEFGHAQL  116 (527)
T ss_dssp             ETHHHHHHHHHSSSCBC-----CEEEEEE
T ss_pred             EChHHHHHHHHcCCeEEeCCCccccceEE
Confidence            99999999999999999988778887754

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.87  E-value=2.6e-22  Score=168.76  Aligned_cols=106  Identities=17%  Similarity=0.322  Sum_probs=88.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH---HHHHHHHh-CCCCCE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---SLQTVLEL-GPTVPL  100 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~---~~~~i~~~-~~~~Pv  100 (133)
                      .+|+||||+++|++++.++|++.|+.+++++++ .+.+++...++|||||+|||+++++.+.   ...+++.+ ++++|+
T Consensus         8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~Pv   86 (556)
T 3uow_A            8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPI   86 (556)
T ss_dssp             CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCE
T ss_pred             CEEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCE
Confidence            689999999999999999999999999999985 5566776568999999999999886542   12344443 568999


Q ss_pred             EEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797          101 FGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       101 LGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      ||||+|||+|+.++||+|.+....++|...+
T Consensus        87 LGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l  117 (556)
T 3uow_A           87 FGICYGMQEIAVQMNGEVKKSKTSEYGCTDV  117 (556)
T ss_dssp             EEETHHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred             EEECHHHHHHHHHhCCcEecCCCcccCCcce
Confidence            9999999999999999999987778887653

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.87  E-value=3.5e-22  Score=166.04  Aligned_cols=104  Identities=21%  Similarity=0.366  Sum_probs=84.3

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEe
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC  104 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC  104 (133)
                      ||+|||++++|++++.+++++.|+.++++|++ .+.+++...++|||||+|||+++++.... ...+. ++.++|+||||
T Consensus         1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~-~~~~~~~~~~~PvLGIC   78 (503)
T 2ywb_A            1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAP-RPDPRLFSSGLPLLGIC   78 (503)
T ss_dssp             CEEEEESSCTTHHHHHHHHHTTTCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCC-CCCGGGGCSSCCEEEET
T ss_pred             CEEEEECCCcHHHHHHHHHHHCCCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCc-chHHHHHhCCCCEEEEC
Confidence            48999999999999999999999999999986 46777765567999999999998865421 11123 37789999999


Q ss_pred             chHHHHHHHhCCeeeeccCCcceeeee
Q 032797          105 MGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       105 lG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      +|||+|+.++||+|.+.+.+++|+..+
T Consensus        79 ~G~Qlla~~~GG~v~~~~~~e~G~~~v  105 (503)
T 2ywb_A           79 YGMQLLAQELGGRVERAGRAEYGKALL  105 (503)
T ss_dssp             HHHHHHHHTTTCEEECC---CEEEEEC
T ss_pred             HHHHHHHHHhCCeEeeCCCCccceEEE
Confidence            999999999999999987777887654

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.87  E-value=2.1e-22  Score=151.47  Aligned_cols=105  Identities=17%  Similarity=0.301  Sum_probs=76.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG  102 (133)
                      ..+|+|||++++|..++.++|++.|+++++++.+ .+.+++...++|||||+||++++++.... .+.+. ++.++|+||
T Consensus        24 ~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~~-~~~~~~~~~~~PilG  101 (218)
T 2vpi_A           24 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIFTIGKPVLG  101 (218)
T ss_dssp             TTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTT-CCHHHHHHHTCSEEEEEC---------CC-CCCGGGGTSSCCEEE
T ss_pred             CCeEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccch-hHHHHHHHcCCCEEE
Confidence            4689999999999999999999999999999875 34556654479999999999877643211 11223 367899999


Q ss_pred             EechHHHHHHHhCCeeeeccCCcceeee
Q 032797          103 VCMGLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus       103 IClG~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      ||+|||+|+.++||+|.+.+..+.|+..
T Consensus       102 IC~G~Qll~~~~GG~v~~~~~~~~G~~~  129 (218)
T 2vpi_A          102 ICYGMQMMNKVFGGTVHKKSVREDGVFN  129 (218)
T ss_dssp             ETHHHHHHHHHTTCCEEEEEECSCEEEE
T ss_pred             EcHHHHHHHHHhCCceEeCCCCcccEEE
Confidence            9999999999999999987655555543

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.87  E-value=5.1e-22  Score=165.82  Aligned_cols=106  Identities=24%  Similarity=0.434  Sum_probs=88.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG  102 (133)
                      .++|+|||++++|++++.++|++.|+.++++|++ .+.+++...++|||||+|||+++++.... ...+. ++.++|+||
T Consensus         7 ~~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~-~~~~~~~~~g~PvLG   84 (525)
T 1gpm_A            7 KHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAGVPVFG   84 (525)
T ss_dssp             SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCC-CCCGGGGTSSSCEEE
T ss_pred             CCEEEEEECCCccHHHHHHHHHHCCCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCc-chHHHHHHCCCCEEE
Confidence            4689999999999999999999999999999986 45666754478999999999998865421 11222 367899999


Q ss_pred             EechHHHHHHHhCCeeeeccCCcceeeee
Q 032797          103 VCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       103 IClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      ||+|||+|+.++||+|.+.+.+++|+..+
T Consensus        85 IC~G~Qlla~~~GG~V~~~~~~e~G~~~v  113 (525)
T 1gpm_A           85 VCYGMQTMAMQLGGHVEASNEREFGYAQV  113 (525)
T ss_dssp             ETHHHHHHHHHHTCEEECCSSCEEEEEEE
T ss_pred             EChHHHHHHHHcCCEEEeCCCcccceEEE
Confidence            99999999999999999988778887654

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.83  E-value=2.4e-21  Score=166.38  Aligned_cols=117  Identities=17%  Similarity=0.304  Sum_probs=74.9

Q ss_pred             ccccccccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHH
Q 032797           13 LYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL   92 (133)
Q Consensus        13 ~~~~~~~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~   92 (133)
                      .|+.+......+.+|+|||++++|++.+.+.|++.|+.++++|++ .+.+++...++|||||+|||+++++.+.. .+.+
T Consensus        18 ~~~~~~~~~~~~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~-~~~~   95 (697)
T 2vxo_A           18 LYFQSMGHHHYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDP   95 (697)
T ss_dssp             -----------CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CC-CCCG
T ss_pred             hhhhhhhccCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccch-hHHH
Confidence            345544434556789999999999999999999999999999986 45667754589999999999988754321 0112


Q ss_pred             H-hCCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797           93 E-LGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus        93 ~-~~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      . ++.++|+||||+|||+|+.++||+|.+.+..++|+..+
T Consensus        96 ~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~~e~G~~~v  135 (697)
T 2vxo_A           96 AIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNI  135 (697)
T ss_dssp             GGTTSSCCEEEEEHHHHHHHHHTTCCBCC-------CEEE
T ss_pred             HHHhCCCCEEEECHHHHHHHHHhCCeEeecCCCccceEEE
Confidence            2 36789999999999999999999999887667776543

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.83  E-value=1.8e-20  Score=141.97  Aligned_cols=105  Identities=13%  Similarity=0.182  Sum_probs=80.0

Q ss_pred             CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCCCcCCc---------hHHHHHHH
Q 032797           25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDS---------GISLQTVL   92 (133)
Q Consensus        25 ~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~~~~d~---------~~~~~~i~   92 (133)
                      |||++|++.... ...+.+++++.|+++.+++.....  ++++  .++|+|||+|||++|.+.         ....++|+
T Consensus         1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~--~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~   78 (236)
T 3l7n_A            1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDI--DDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQ   78 (236)
T ss_dssp             CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCG--GGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCc--cccCEEEECCCCCCcccccccCcccchHHHHHHHH
Confidence            689999875433 457889999999999988763211  1122  379999999999997532         12467787


Q ss_pred             Hh-CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797           93 EL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus        93 ~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      ++ +.++|+||||+|||+|+.++||+|.+.+.+++|+..+
T Consensus        79 ~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~G~~~v  118 (236)
T 3l7n_A           79 KAAKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGNYLI  118 (236)
T ss_dssp             HHHHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEEEEEEE
T ss_pred             HHHHcCCCEEEEchHHHHHHHHhCCEEecCCCceeeeEEE
Confidence            74 7889999999999999999999999887666666543

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.83  E-value=1.4e-20  Score=144.46  Aligned_cols=105  Identities=19%  Similarity=0.287  Sum_probs=81.1

Q ss_pred             CCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-C
Q 032797           24 KNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-G   95 (133)
Q Consensus        24 ~~~i~vid~~~-~~~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~   95 (133)
                      +++|++|++.. +...++.++|++.|+++++++.+...  .+++  .++|+|||+|||+++++..    ...++|+++ +
T Consensus         3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~--~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~   80 (250)
T 3m3p_A            3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEI--RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVA   80 (250)
T ss_dssp             CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCG--GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCcc--ccCCEEEECCCCCcccccchHHHHHHHHHHHHHH
Confidence            56899998754 55778999999999999998854211  1223  3799999999999887542    245677764 6


Q ss_pred             CCCCEEEEechHHHHHHHhCCeeeeccCCcceeee
Q 032797           96 PTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus        96 ~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      .++|+||||+|+|+|+.++||+|.+.+.++.|+..
T Consensus        81 ~~~PvlGIC~G~Qll~~~lGG~V~~~~~~e~G~~~  115 (250)
T 3m3p_A           81 QRVPVIGHCLGGQLLAKAMGGEVTDSPHAEIGWVR  115 (250)
T ss_dssp             HTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEE
T ss_pred             cCCCEEEECHHHHHHHHHhCCEEEeCCCCceeeEE
Confidence            78999999999999999999999988655555543

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.81  E-value=2e-20  Score=138.68  Aligned_cols=93  Identities=18%  Similarity=0.320  Sum_probs=69.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHH---HHHHHh-CCCCC
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISL---QTVLEL-GPTVP   99 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~---~~i~~~-~~~~P   99 (133)
                      ..+|+|||++.++.+++.++|+++|+++++++.    .+++.  ++|+|||+ |++++.+.....   .+++.+ +.++|
T Consensus         2 ~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~----~~~l~--~~D~lilP-G~g~~~~~~~~~~~~~~i~~~~~~~~P   74 (211)
T 4gud_A            2 TQNVVIIDTGCANISSVKFAIERLGYAVTISRD----PQVVL--AADKLFLP-GVGTASEAMKNLTERDLIELVKRVEKP   74 (211)
T ss_dssp             -CCEEEECCCCTTHHHHHHHHHHTTCCEEEECC----HHHHH--HCSEEEEC-CCSCHHHHHHHHHHTTCHHHHHHCCSC
T ss_pred             CCEEEEEECCCChHHHHHHHHHHCCCEEEEECC----HHHHh--CCCEEEEC-CCCCHHHHHHHHHhcChHHHHHHcCCC
Confidence            357999999999999999999999999998742    56665  68999996 556665443321   234443 57899


Q ss_pred             EEEEechHHHHHHHhCCeeeeccC
Q 032797          100 LFGVCMGLQCIGEAFGDCAFSAWC  123 (133)
Q Consensus       100 vLGIClG~QlLa~a~GG~v~~~~~  123 (133)
                      +||||+|||+|+.++|+++.+...
T Consensus        75 vlGIClG~QlL~~~~g~~~~~~~~   98 (211)
T 4gud_A           75 LLGICLGMQLLGKLSEEKGQKADE   98 (211)
T ss_dssp             EEEETHHHHTTSSEECCC----CC
T ss_pred             EEEEchhHhHHHHHhCCcccccCC
Confidence            999999999999999998876543

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.80  E-value=2.4e-19  Score=136.17  Aligned_cols=108  Identities=13%  Similarity=0.246  Sum_probs=80.3

Q ss_pred             cCCCCCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCCCcCCch------HHHHH
Q 032797           20 SKNNKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG------ISLQT   90 (133)
Q Consensus        20 ~~~~~~~i~vid~~~-~~~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~   90 (133)
                      -.-...||++|++.. .+..++.++++..|+++.+++++...  .+++  .++|+|||+|||.++++..      ...++
T Consensus         8 ~~~~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l--~~~Dglil~GG~~~~~~~~~~~~l~~~~~~   85 (239)
T 1o1y_A            8 HHHHHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQL   85 (239)
T ss_dssp             --CCCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHH
T ss_pred             cccceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccch--hcCCEEEECCCCccccCCccChhHHHHHHH
Confidence            345567999997754 34567899999999999887764211  1122  3799999999998887642      24567


Q ss_pred             HHHh-CCCCCEEEEechHHHHHHHhCCeeeeccC-Ccceee
Q 032797           91 VLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWC-HAWKKF  129 (133)
Q Consensus        91 i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~-~~~g~~  129 (133)
                      |+++ ++++|+||||+|||+|+.++||+|.+.+. ++.|+.
T Consensus        86 i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~  126 (239)
T 1o1y_A           86 IEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWY  126 (239)
T ss_dssp             HHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEE
T ss_pred             HHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccccE
Confidence            7774 67899999999999999999999998765 555543

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.74  E-value=1.2e-18  Score=126.96  Aligned_cols=86  Identities=16%  Similarity=0.274  Sum_probs=67.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH----HHHHHHHhCCCCCE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLELGPTVPL  100 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~----~~~~i~~~~~~~Pv  100 (133)
                      |||+|||+++++.. +.++|++.|+++.+++.+    +++.  ++|+|||+||++++++...    ..+.++  ++++|+
T Consensus         1 m~i~vl~~~g~~~~-~~~~l~~~G~~~~~~~~~----~~~~--~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~Pi   71 (186)
T 2ywj_A            1 MIIGVLAIQGDVEE-HEEAIKKAGYEAKKVKRV----EDLE--GIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPI   71 (186)
T ss_dssp             CEEEEECSSSCCHH-HHHHHHHTTSEEEEECSG----GGGT--TCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCE
T ss_pred             CEEEEEecCcchHH-HHHHHHHCCCEEEEECCh----HHhc--cCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcE
Confidence            68999999887775 458999999999888642    3443  7999999999876653221    234444  778999


Q ss_pred             EEEechHHHHHHHhCCeee
Q 032797          101 FGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus       101 LGIClG~QlLa~a~GG~v~  119 (133)
                      ||||+|||+|+.++||++.
T Consensus        72 lGIC~G~Qll~~~~gg~~~   90 (186)
T 2ywj_A           72 LGTCAGMVLLSKGTGINQI   90 (186)
T ss_dssp             EEETHHHHHHSSCCSSCCC
T ss_pred             EEECHHHHHHHHHhCCCcC
Confidence            9999999999999999853

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.71  E-value=5.4e-18  Score=124.96  Aligned_cols=92  Identities=13%  Similarity=0.187  Sum_probs=71.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc------hHHHHHHHHh-CC
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GP   96 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~------~~~~~~i~~~-~~   96 (133)
                      +++|+|||++.++..++.++|++.|+++++++.+    +++.  ++|+|||+| ++++.+.      ..+.++|+++ ++
T Consensus         2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~d~lil~G-~g~~~~~~~~l~~~~~~~~i~~~~~~   74 (200)
T 1ka9_H            2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP----KAHE--EADLLVLPG-QGHFGQVMRAFQESGFVERVRRHLER   74 (200)
T ss_dssp             -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST----TSCS--SCSEEEECC-CSCHHHHHHTTSSSCTHHHHHHHHHT
T ss_pred             ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecCh----HHcc--cCCEEEECC-CCcHHHHHHHHHhcCHHHHHHHHHHc
Confidence            4789999987778888999999999999988643    2333  799999955 4554321      2246778774 77


Q ss_pred             CCCEEEEechHHHHHHH---hC---------Ceeeecc
Q 032797           97 TVPLFGVCMGLQCIGEA---FG---------DCAFSAW  122 (133)
Q Consensus        97 ~~PvLGIClG~QlLa~a---~G---------G~v~~~~  122 (133)
                      ++|+||||+|||+|+.+   +|         |++.+.+
T Consensus        75 ~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~  112 (200)
T 1ka9_H           75 GLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFR  112 (200)
T ss_dssp             TCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECC
T ss_pred             CCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECC
Confidence            89999999999999999   68         8887764

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.70  E-value=9.2e-18  Score=123.12  Aligned_cols=87  Identities=17%  Similarity=0.285  Sum_probs=66.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVP   99 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~P   99 (133)
                      |||+|+|+.++|...+ ++|++.|+++.+++..    +++.  ++|+||++||+.++++..    .+.++++++ ++++|
T Consensus         2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p   74 (196)
T 2nv0_A            2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKRP----EQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP   74 (196)
T ss_dssp             CEEEEECSSSCCHHHH-HHHHHTTCEEEEECSG----GGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCc
Confidence            6899999988887655 8999999998887642    3443  699999999986554321    125677775 78899


Q ss_pred             EEEEechHHHHHHHhCCee
Q 032797          100 LFGVCMGLQCIGEAFGDCA  118 (133)
Q Consensus       100 vLGIClG~QlLa~a~GG~v  118 (133)
                      +||||+|||+|+.++||++
T Consensus        75 ilgIC~G~q~l~~~~gg~~   93 (196)
T 2nv0_A           75 MFGTCAGLIILAKEIAGSD   93 (196)
T ss_dssp             EEEETHHHHHHSBCCC---
T ss_pred             EEEECHHHHHHHHHhcCCC
Confidence            9999999999999999975

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=99.69  E-value=5.6e-17  Score=124.04  Aligned_cols=83  Identities=19%  Similarity=0.316  Sum_probs=62.0

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCC-CHHHHccCCCCEEEECCCCC-CcC--Cc--------------hHHHHHHHHh-CCCC
Q 032797           38 YNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPG-APQ--DS--------------GISLQTVLEL-GPTV   98 (133)
Q Consensus        38 ~~i~~~l~~~G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~-~~~--d~--------------~~~~~~i~~~-~~~~   98 (133)
                      ..+.++++++|+.+.++|+... ..+++. .++|||||+||++ +|.  ..              ...+++++++ +.++
T Consensus        31 ~~~~~~l~~aG~~pv~lp~~~~~~~~~~l-~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~  109 (254)
T 3fij_A           31 QRYVDAIQKVGGFPIALPIDDPSTAVQAI-SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGK  109 (254)
T ss_dssp             HHHHHHHHHHTCEEEEECCCCGGGHHHHH-HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCchHHHHHH-hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCC
Confidence            4578889999999999987521 122222 2799999999986 332  11              1145677774 7899


Q ss_pred             CEEEEechHHHHHHHhCCeeeec
Q 032797           99 PLFGVCMGLQCIGEAFGDCAFSA  121 (133)
Q Consensus        99 PvLGIClG~QlLa~a~GG~v~~~  121 (133)
                      |+||||+|||+|+.++||++.+.
T Consensus       110 PiLGIC~G~Qll~~a~Gg~v~~~  132 (254)
T 3fij_A          110 PIFAICRGMQLVNVALGGTLYQD  132 (254)
T ss_dssp             CEEEETHHHHHHHHHTTCCEESS
T ss_pred             CEEEECHHHHHHHHHhCCceecc
Confidence            99999999999999999999864

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.69  E-value=6.8e-18  Score=126.32  Aligned_cols=91  Identities=14%  Similarity=0.234  Sum_probs=70.5

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GP   96 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~----~~~~~~i~~~-~~   96 (133)
                      ..+++|+|+++.+.|.. +.++|++.|+++.+++..    +++.  ++|+|||+||++++.+.    ..+.++|+++ ++
T Consensus        21 ~~~~~I~il~~~~~~~~-~~~~l~~~G~~~~~~~~~----~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~   93 (219)
T 1q7r_A           21 QSNMKIGVLGLQGAVRE-HVRAIEACGAEAVIVKKS----EQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAA   93 (219)
T ss_dssp             CCCCEEEEESCGGGCHH-HHHHHHHTTCEEEEECSG----GGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCEEEEEeCCCCcHH-HHHHHHHCCCEEEEECCH----HHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHc
Confidence            45689999998766765 458899999999888752    3443  79999999998655432    1135677775 78


Q ss_pred             CCCEEEEechHHHHHHHhCCeee
Q 032797           97 TVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        97 ~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      ++|+||||+|||+|+.++||++.
T Consensus        94 ~~PilGIC~G~QlL~~~~gg~~~  116 (219)
T 1q7r_A           94 GKPMFGTCAGLILLAKRIVGYDE  116 (219)
T ss_dssp             TCCEEEETTHHHHHEEEEESSCC
T ss_pred             CCeEEEECHHHHHHHHHhCCCCc
Confidence            89999999999999999999763

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.67  E-value=8.3e-17  Score=118.87  Aligned_cols=93  Identities=13%  Similarity=0.098  Sum_probs=73.6

Q ss_pred             CCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC--------chHHHHHHHHh
Q 032797           24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLEL   94 (133)
Q Consensus        24 ~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d--------~~~~~~~i~~~   94 (133)
                      .++|+|+++++.+. .++.++|++.|+++++++.++    ++  .++|+|||+||+..+.+        ...+.++++++
T Consensus         2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~   75 (213)
T 3d54_D            2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD----KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKA   75 (213)
T ss_dssp             CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC----CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHH
T ss_pred             CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC----Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHH
Confidence            46899999987775 778999999999999887641    22  37999999999653332        12246777774


Q ss_pred             -CCCCCEEEEechHHHHHHH--hCCeeeecc
Q 032797           95 -GPTVPLFGVCMGLQCIGEA--FGDCAFSAW  122 (133)
Q Consensus        95 -~~~~PvLGIClG~QlLa~a--~GG~v~~~~  122 (133)
                       ++++|+||||+|+|+|+.+  +||++.+.+
T Consensus        76 ~~~~~pilgIC~G~qlLa~aGll~g~v~~~~  106 (213)
T 3d54_D           76 AERGKLIMGICNGFQILIEMGLLKGALLQNS  106 (213)
T ss_dssp             HHHTCEEEECHHHHHHHHHHTSSCSEEECCS
T ss_pred             HHCCCEEEEECHHHHHHHHcCCCCCCeecCC
Confidence             6789999999999999999  999998764

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.67  E-value=4.4e-17  Score=119.92  Aligned_cols=83  Identities=17%  Similarity=0.090  Sum_probs=65.5

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCC-----CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELG-----YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE   93 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G-----~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~   93 (133)
                      |||+|||++.++..++.++|++.|     +++++++.++    +   .++|+|||+|| +++.+..      .+.++|++
T Consensus         1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~----~---~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~   72 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPR----N---DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRK   72 (201)
T ss_dssp             CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCC----S---SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHH
T ss_pred             CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCc----c---cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHH
Confidence            689999988778889999999999     8998887531    2   37999999664 5543321      13467777


Q ss_pred             h-CCCCCEEEEechHHHHHHHhC
Q 032797           94 L-GPTVPLFGVCMGLQCIGEAFG  115 (133)
Q Consensus        94 ~-~~~~PvLGIClG~QlLa~a~G  115 (133)
                      + ++++|+||||+|||+|+.++|
T Consensus        73 ~~~~~~PilGIC~G~Qll~~~~g   95 (201)
T 1gpw_B           73 HVEDERYVVGVCLGMQLLFEESE   95 (201)
T ss_dssp             HHHTTCEEEEETHHHHTTSSEET
T ss_pred             HHHcCCeEEEEChhHHHHHHhhc
Confidence            5 678999999999999999996

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=99.64  E-value=4.9e-16  Score=122.42  Aligned_cols=83  Identities=18%  Similarity=0.296  Sum_probs=62.0

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCch------HHHHHHHHh-C-C-CCCEEEEechH
Q 032797           39 NLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG------ISLQTVLEL-G-P-TVPLFGVCMGL  107 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~-~-~~PvLGIClG~  107 (133)
                      ++.++|+++|+.+++++.+. +.+++..  .++|||||+||++++.+..      .+.+.+++. + . ++|+||||+||
T Consensus        56 ~~~~~l~~~G~~~~vv~~~~-~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~  134 (315)
T 1l9x_A           56 SYVKYLESAGARVVPVRLDL-TEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF  134 (315)
T ss_dssp             HHHHHHHHTTCEEEEECSSC-CHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred             HHHHHHHHCCCEEEEEecCC-CHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH
Confidence            57899999999999998753 4444422  2699999999998876542      133444443 2 2 69999999999


Q ss_pred             HHHHHHhCCeeeecc
Q 032797          108 QCIGEAFGDCAFSAW  122 (133)
Q Consensus       108 QlLa~a~GG~v~~~~  122 (133)
                      |+|+.++||++....
T Consensus       135 Qll~~a~GG~~~~~~  149 (315)
T 1l9x_A          135 EELSLLISGECLLTA  149 (315)
T ss_dssp             HHHHHHHHSSCCCEE
T ss_pred             HHHHHHhCCcccccc
Confidence            999999999976544

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.63  E-value=5.9e-17  Score=126.32  Aligned_cols=98  Identities=15%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             ccCCCCCeEEEE-EC-CCCc-hHHHHHHHHhCCC----eEEEEeCCCC---------CHHH-------HccCCCCEEEEC
Q 032797           19 KSKNNKNPIIVI-DN-YDSF-TYNLCQYMGELGY----HFEVYRNDEL---------TVEE-------LKRKNPRGVLIS   75 (133)
Q Consensus        19 ~~~~~~~~i~vi-d~-~~~~-~~~i~~~l~~~G~----~~~v~~~~~~---------~~~~-------l~~~~~DgvIl~   75 (133)
                      ..+...++|+|| |+ +.++ ..++.++|+++|+    ++.+...+..         +.++       +  .++|||||+
T Consensus        20 ~~~~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~dgiil~   97 (289)
T 2v4u_A           20 FQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKL--CKADGILVP   97 (289)
T ss_dssp             ---CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHH--HHCSEEEEC
T ss_pred             hCcCCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHH--hhCCEEEec
Confidence            344445799999 77 5555 5578899988764    3344433211         1121       3  269999999


Q ss_pred             CCCCCcCCchHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797           76 PGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        76 GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      ||++++.. ....++++++ +.++|+||||+|||+|+.++||++.
T Consensus        98 GG~~~~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~  141 (289)
T 2v4u_A           98 GGFGIRGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL  141 (289)
T ss_dssp             SCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred             CCCCchhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence            99987443 3355677775 6789999999999999999999985

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=99.63  E-value=8.5e-17  Score=134.97  Aligned_cols=94  Identities=22%  Similarity=0.256  Sum_probs=70.2

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-----CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP   99 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-----~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~P   99 (133)
                      .+.++|+|+++.+.+.++..+.|+++.+.+.+..     ..++.. .++|||||+||++++...+ .+++++++ ++++|
T Consensus       309 yv~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~~g-~i~~ir~a~e~~iP  386 (550)
T 1vco_A          309 YVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEG-KVRAAQYARERKIP  386 (550)
T ss_dssp             CC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHH-HHHHHHHHHHTTCC
T ss_pred             eEEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcchhh-hHHHHHHHHHCCCc
Confidence            3456688888888888888888999988865421     122222 3799999999999886533 34677764 67899


Q ss_pred             EEEEechHHHHHHHhCCeeeec
Q 032797          100 LFGVCMGLQCIGEAFGDCAFSA  121 (133)
Q Consensus       100 vLGIClG~QlLa~a~GG~v~~~  121 (133)
                      +||||+|||+|+.++||++.+.
T Consensus       387 iLGICLGmQlL~~a~Gg~v~~l  408 (550)
T 1vco_A          387 YLGICLGLQIAVIEFARNVAGL  408 (550)
T ss_dssp             EEEETHHHHHHHHHHHHHTSCC
T ss_pred             EEEECcCHHHHHHHhCcccccC
Confidence            9999999999999999988754

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=99.62  E-value=3.1e-16  Score=116.32  Aligned_cols=89  Identities=15%  Similarity=0.218  Sum_probs=64.3

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GP   96 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~----~~~~~~i~~~-~~   96 (133)
                      ...++|+|+|+ ..+...+.++|++.|+++.+++..    +++.  ++|+|||+||+.+.++.    ..+.++|+++ ++
T Consensus        18 ~~~~~I~ii~~-~~~~~~~~~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~   90 (208)
T 2iss_D           18 GSHMKIGVLGV-QGDVREHVEALHKLGVETLIVKLP----EQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERINN   90 (208)
T ss_dssp             --CCEEEEECS-SSCHHHHHHHHHHTTCEEEEECSG----GGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCcEEEEEEC-CCchHHHHHHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHC
Confidence            44579999997 445556788899999998887642    3453  69999999985332221    1135677775 67


Q ss_pred             CCCEEEEechHHHHHHHhCCe
Q 032797           97 TVPLFGVCMGLQCIGEAFGDC  117 (133)
Q Consensus        97 ~~PvLGIClG~QlLa~a~GG~  117 (133)
                      ++|+||||+|||+|+.++||+
T Consensus        91 g~PilGIC~G~QlL~~~~gg~  111 (208)
T 2iss_D           91 GLPVFATCAGVILLAKRIKNY  111 (208)
T ss_dssp             TCCEEEETHHHHHHEEEEC--
T ss_pred             CCeEEEECHHHHHHHHHcCCC
Confidence            899999999999999999993

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.60  E-value=2e-16  Score=122.41  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             CeEEEE-EC----CCCc---hHHHHHHHHhCCCeEEEEeCCCCC--------H-HHHccCCCCEEEECCCCCCcCCchHH
Q 032797           25 NPIIVI-DN----YDSF---TYNLCQYMGELGYHFEVYRNDELT--------V-EELKRKNPRGVLISPGPGAPQDSGIS   87 (133)
Q Consensus        25 ~~i~vi-d~----~~~~---~~~i~~~l~~~G~~~~v~~~~~~~--------~-~~l~~~~~DgvIl~GG~~~~~d~~~~   87 (133)
                      .+|+|+ |+    .|.|   .+.+.++..+.+.++.+++.+...        . +.+  .++|||||+||++++...+ .
T Consensus         9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~~dgiil~GG~~~~~~~~-~   85 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKAL--LGCDGIFVPGGFGNRGVDG-K   85 (273)
T ss_dssp             EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHH--HTCSEEEECCCCTTTTHHH-H
T ss_pred             CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHH--hhCCEEEecCCCCCcCchh-H
Confidence            688888 55    3333   334445555567778777654211        1 123  2799999999988754433 4


Q ss_pred             HHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797           88 LQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        88 ~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      .++++++ +.++|+||||+|||+|+.++||+|.
T Consensus        86 ~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~  118 (273)
T 2w7t_A           86 CAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV  118 (273)
T ss_dssp             HHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCcEEEECcCHHHHHHHHhCccc
Confidence            5667764 6789999999999999999999984

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.57  E-value=8.3e-16  Score=111.86  Aligned_cols=86  Identities=15%  Similarity=0.167  Sum_probs=64.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCC-cCCc---hHHHHHHHHh-CCC-
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS---GISLQTVLEL-GPT-   97 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~-~~d~---~~~~~~i~~~-~~~-   97 (133)
                      .++|.|+... +...++.++|++.|+++++++..    +++.  ++|+|||+||+.. +.+.   ..+.++++++ +++ 
T Consensus         2 ~p~Igi~~~~-~~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~   74 (191)
T 2ywd_A            2 RGVVGVLALQ-GDFREHKEALKRLGIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGS   74 (191)
T ss_dssp             -CCEEEECSS-SCHHHHHHHHHTTTCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTC
T ss_pred             CcEEEEEecC-CchHHHHHHHHHCCCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCC
Confidence            4678888764 34457889999999999888653    2443  6999999999532 1111   1245677775 678 


Q ss_pred             CCEEEEechHHHHHHHhCC
Q 032797           98 VPLFGVCMGLQCIGEAFGD  116 (133)
Q Consensus        98 ~PvLGIClG~QlLa~a~GG  116 (133)
                      +|+||||+|||+|+.++||
T Consensus        75 ~PilGiC~G~Q~l~~~~gg   93 (191)
T 2ywd_A           75 LALFGTCAGAIWLAKEIVG   93 (191)
T ss_dssp             CEEEEETHHHHHHEEEETT
T ss_pred             CeEEEECHHHHHHHHHhCC
Confidence            9999999999999999998

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.57  E-value=1.7e-15  Score=113.48  Aligned_cols=90  Identities=17%  Similarity=0.249  Sum_probs=67.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhC---CCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC----c--hHHHHHHHHh
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGEL---GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----S--GISLQTVLEL   94 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~---G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d----~--~~~~~~i~~~   94 (133)
                      .++|.|+++.+.+. ...++|+++   |+++.+++.    .+++.  ++|+|||+||+.+..+    .  ..+.++|+++
T Consensus         3 ~~~I~Il~~~~~~~-~~~~~l~~~~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~   75 (227)
T 2abw_A            3 EITIGVLSLQGDFE-PHINHFIKLQIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHF   75 (227)
T ss_dssp             CEEEEEECTTSCCH-HHHHHHHTTCCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcH-HHHHHHHHhccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHH
Confidence            47899998775554 567889888   988877653    34554  6999999999753321    1  2245677774


Q ss_pred             -CC-CCCEEEEechHHHHHHHhCCeeee
Q 032797           95 -GP-TVPLFGVCMGLQCIGEAFGDCAFS  120 (133)
Q Consensus        95 -~~-~~PvLGIClG~QlLa~a~GG~v~~  120 (133)
                       +. ++|+||||+|||+|+.++||++..
T Consensus        76 ~~~~g~PilGIC~G~QlL~~~~gg~~~~  103 (227)
T 2abw_A           76 IHVLKKPIWGTCAGCILLSKNVENIKLY  103 (227)
T ss_dssp             HHTSCCCEEEETHHHHHTEEEEECCCSC
T ss_pred             HHhcCCEEEEECHHHHHHHHHhcCCccc
Confidence             67 899999999999999999998633

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=99.54  E-value=5.8e-16  Score=129.79  Aligned_cols=79  Identities=16%  Similarity=0.288  Sum_probs=56.9

Q ss_pred             HHHHHHHhCC----CeEEEEeCCCCCHHHHc------cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797           39 NLCQYMGELG----YHFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        39 ~i~~~l~~~G----~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                      ++.++|+..|    .++.+.+.+   .+++.      ..++|||||+|||+++...+ ..++++++ +.++|+||||+||
T Consensus       307 Si~~aL~~~G~~~~~~V~i~~~d---~e~i~~~~~~~l~~~DGIilsGGpg~~~~~g-~~~~i~~a~~~~~PiLGIClG~  382 (545)
T 1s1m_A          307 SVIEALKHGGLKNRVSVNIKLID---SQDVETRGVEILKGLDAILVPGGFGYRGVEG-MITTARFARENNIPYLGICLGM  382 (545)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEE---HHHHHHHCTTTTTTCSEEEECCCCSSTTHHH-HHHHHHHHHHTTCCEEEETHHH
T ss_pred             HHHHHHHHhCcccCCeEEEccCC---HHHhhhhhhhhhhcCCEEEECCCCCCccchh-hHHHHHHHHHCCCcEEEECChH
Confidence            4555565544    456666654   22221      23799999999999886533 44667764 6789999999999


Q ss_pred             HHHHHHhCCeeeec
Q 032797          108 QCIGEAFGDCAFSA  121 (133)
Q Consensus       108 QlLa~a~GG~v~~~  121 (133)
                      |+|+.++||++.+.
T Consensus       383 Qll~va~Gg~v~~l  396 (545)
T 1s1m_A          383 QVALIDYARHVANM  396 (545)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCceecC
Confidence            99999999998754

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.51  E-value=5.7e-15  Score=124.07  Aligned_cols=92  Identities=15%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHHh-CCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GPT   97 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~~~   97 (133)
                      ++|+|||+++++..++.++|++.|+++.+++..+  .+.+  .++|+|||+|| +++....      .+.++|+++ +.+
T Consensus         5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~--~~~l--~~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~g   79 (555)
T 1jvn_A            5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPK--DFNI--SGTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIESG   79 (555)
T ss_dssp             CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGG--GCCS--TTCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCcc--cccc--ccCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHcC
Confidence            5899999877888899999999999999887431  1113  37999999663 4433211      135667764 678


Q ss_pred             CCEEEEechHHHHHHHh------------CCeeeec
Q 032797           98 VPLFGVCMGLQCIGEAF------------GDCAFSA  121 (133)
Q Consensus        98 ~PvLGIClG~QlLa~a~------------GG~v~~~  121 (133)
                      +|+||||+|||+|+.++            ||++.+.
T Consensus        80 ~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~  115 (555)
T 1jvn_A           80 KPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRF  115 (555)
T ss_dssp             CCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEEC
T ss_pred             CcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEEC
Confidence            99999999999999998            7888864

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.49  E-value=7.7e-15  Score=122.24  Aligned_cols=96  Identities=20%  Similarity=0.426  Sum_probs=66.6

Q ss_pred             cCCCCCeEEEEECC----CCchHHHHHHH----HhCCCeEEEEeCCCCCH--------HHHccCCCCEEEECCCCCCcCC
Q 032797           20 SKNNKNPIIVIDNY----DSFTYNLCQYM----GELGYHFEVYRNDELTV--------EELKRKNPRGVLISPGPGAPQD   83 (133)
Q Consensus        20 ~~~~~~~i~vid~~----~~~~~~i~~~l----~~~G~~~~v~~~~~~~~--------~~l~~~~~DgvIl~GG~~~~~d   83 (133)
                      ++....+|+++.-|    |+|. ++.++|    .+.+.++.+.+.+..+.        +++  .++||||++||++++..
T Consensus       289 ~~~~~v~IalVGKY~~l~DaY~-Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L--~~~DgIIlpGG~G~~~~  365 (535)
T 3nva_A          289 NSKKTINIALVGKYTKLKDSYI-SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEIL--GNVNGIIVLPGFGSRGA  365 (535)
T ss_dssp             TCCCEEEEEEEESCTTSGGGGH-HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTT--TSCSEEEECCCCSSTTH
T ss_pred             CCCCeeEEEEEecCcCCchhHH-HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhc--cCCCEEEECCCCCCccH
Confidence            45566889999544    3332 344444    44677777765432111        222  37999999999987643


Q ss_pred             chHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797           84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        84 ~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      .+ ..++++++ ++++|+||||+|||+|+.++||++.
T Consensus       366 ~g-~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~  401 (535)
T 3nva_A          366 EG-KIKAIKYAREHNIPFLGICFGFQLSIVEFARDVL  401 (535)
T ss_dssp             HH-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTT
T ss_pred             HH-HHHHHHHHHHcCCcEEEECcchhHHHHHhhcccc
Confidence            33 45677764 6789999999999999999999984

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=99.48  E-value=9.5e-14  Score=109.02  Aligned_cols=113  Identities=11%  Similarity=0.142  Sum_probs=70.4

Q ss_pred             ccccCC-CCCeEEEEECCCCc---hHHHHHHHHhCCCeEE--EEeCCC-C--------------CHHHHccCCCCEEEEC
Q 032797           17 DKKSKN-NKNPIIVIDNYDSF---TYNLCQYMGELGYHFE--VYRNDE-L--------------TVEELKRKNPRGVLIS   75 (133)
Q Consensus        17 ~~~~~~-~~~~i~vid~~~~~---~~~i~~~l~~~G~~~~--v~~~~~-~--------------~~~~l~~~~~DgvIl~   75 (133)
                      ++.+|. .++||+|++.-...   ...+.+.|.....+++  .+.... .              +.+++...+|||+||+
T Consensus        27 ~a~~q~irplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIIT  106 (301)
T 2vdj_A           27 RAETQDIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIIT  106 (301)
T ss_dssp             CCCCTTSCCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEEC
T ss_pred             hhcccCCCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEEC
Confidence            445553 34799999874332   2346666665554444  343321 1              2444444689999999


Q ss_pred             CCCCCcCCch------HHHHHHHHh-CCCCCEEEEechHHHHHHHhCC-eeeeccCCcceee
Q 032797           76 PGPGAPQDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGD-CAFSAWCHAWKKF  129 (133)
Q Consensus        76 GG~~~~~d~~------~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG-~v~~~~~~~~g~~  129 (133)
                      |||.+..+.+      .+.++++.. ++++|+||||+|+|+++.++|| +....++.+||..
T Consensus       107 Gap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~  168 (301)
T 2vdj_A          107 GAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVF  168 (301)
T ss_dssp             CCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_pred             CCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEE
Confidence            9997654332      234555554 6789999999999996665555 4455566666654

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=99.46  E-value=1.2e-13  Score=108.93  Aligned_cols=114  Identities=10%  Similarity=0.026  Sum_probs=68.5

Q ss_pred             ccccC-CCCCeEEEEECCCCc---hHHHHHHHHhCCCeEE--EEeCCC-C--------------CHHHHccCCCCEEEEC
Q 032797           17 DKKSK-NNKNPIIVIDNYDSF---TYNLCQYMGELGYHFE--VYRNDE-L--------------TVEELKRKNPRGVLIS   75 (133)
Q Consensus        17 ~~~~~-~~~~~i~vid~~~~~---~~~i~~~l~~~G~~~~--v~~~~~-~--------------~~~~l~~~~~DgvIl~   75 (133)
                      ++.+| ..++||+|++.-...   ...+.+.|.....+++  .+.... .              +.+++...+|||+||+
T Consensus        39 ~a~~qdirplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIIT  118 (312)
T 2h2w_A           39 RAIHQDIRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIIT  118 (312)
T ss_dssp             ------CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEEC
T ss_pred             hhccCCCCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEEC
Confidence            44555 344799999874332   3346667766554444  443321 1              2333333579999999


Q ss_pred             CCCCCcCCch------HHHHHHHHh-CCCCCEEEEechHHHHHHHhCC-eeeeccCCcceeee
Q 032797           76 PGPGAPQDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGD-CAFSAWCHAWKKFS  130 (133)
Q Consensus        76 GG~~~~~d~~------~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG-~v~~~~~~~~g~~~  130 (133)
                      |||.+..+.+      ++.++++.. ++++|+||||+|+|+++.++|| .....++.+||...
T Consensus       119 GsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~  181 (312)
T 2h2w_A          119 GAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYK  181 (312)
T ss_dssp             CCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEE
T ss_pred             CCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEE
Confidence            9997654332      234555554 6789999999999997666666 44455566666543

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=99.02  E-value=1.4e-10  Score=105.12  Aligned_cols=90  Identities=14%  Similarity=0.185  Sum_probs=64.2

Q ss_pred             CCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCC--CcCCch-----------
Q 032797           22 NNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPG--APQDSG-----------   85 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~--~~~d~~-----------   85 (133)
                      ...+||+||+++.++. +++.++|+.+|+++++++..+.  ..+++  .++|+||++||..  +.-+.+           
T Consensus      1045 ~~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l--~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~ 1122 (1303)
T 3ugj_A         1045 GARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFSYGDVLGAGEGWAKSILFNH 1122 (1303)
T ss_dssp             TCCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCG--GGCSEEEECCSCGGGGTTSTTHHHHHHHHTSH
T ss_pred             CCCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccH--hhCCEEEECCCCcchhhhccchhHHHHHHhch
Confidence            3568999999977775 7889999999999988763100  11223  2799999999953  211111           


Q ss_pred             HHHHHHHH-h-CCCCCEEEEechHHHHHHH
Q 032797           86 ISLQTVLE-L-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        86 ~~~~~i~~-~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+.+.+++ + ++++|+||||+|||+|+++
T Consensus      1123 ~l~~~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A         1123 RVRDEFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp             HHHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             hHHHHHHHHHHhCCCcEEEECHHHHHHHHh
Confidence            12345665 3 6799999999999999986

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.00  E-value=1.5e-09  Score=79.28  Aligned_cols=97  Identities=14%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             ccCCCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCCC----------------HHHHccCCCCEEEECCCCC
Q 032797           19 KSKNNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPG   79 (133)
Q Consensus        19 ~~~~~~~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~~~----------------~~~l~~~~~DgvIl~GG~~   79 (133)
                      ++..+.++|+|+-+.+...   ..+.+.|++.|+++.++..+...                .++....+||+||++||.+
T Consensus        18 ~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~   97 (193)
T 1oi4_A           18 KKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS   97 (193)
T ss_dssp             TTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH
T ss_pred             hhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC
Confidence            4445567898886532222   24678899999999988654211                1122223699999999954


Q ss_pred             CcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH--hCC
Q 032797           80 APQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA--FGD  116 (133)
Q Consensus        80 ~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a--~GG  116 (133)
                       +.   +...+.++|+++ ++++|+.|||.|.|+|+.+  +.|
T Consensus        98 -~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~G  139 (193)
T 1oi4_A           98 -PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRG  139 (193)
T ss_dssp             -HHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTT
T ss_pred             -HHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCC
Confidence             22   234567888885 7899999999999999997  444

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=98.95  E-value=1.2e-09  Score=79.44  Aligned_cols=75  Identities=16%  Similarity=0.113  Sum_probs=56.5

Q ss_pred             HHHHHHHhCCCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEE
Q 032797           39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF  101 (133)
Q Consensus        39 ~i~~~l~~~G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvL  101 (133)
                      ...+.|++.|++++++....              .+.+++...+||+|+++||++..  .+.....++++++ ++++|+.
T Consensus        26 ~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~ia  105 (177)
T 4hcj_A           26 ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVA  105 (177)
T ss_dssp             HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEE
Confidence            46778999999998875431              12344444579999999997632  2345567888885 7899999


Q ss_pred             EEechHHHHHHH
Q 032797          102 GVCMGLQCIGEA  113 (133)
Q Consensus       102 GIClG~QlLa~a  113 (133)
                      +||.|.++|+.+
T Consensus       106 aIC~g~~~La~a  117 (177)
T 4hcj_A          106 GIGSGVVIMANA  117 (177)
T ss_dssp             EETTHHHHHHHT
T ss_pred             EecccHHHHHHC
Confidence            999999999885

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.93  E-value=7.8e-10  Score=82.28  Aligned_cols=88  Identities=11%  Similarity=0.045  Sum_probs=62.5

Q ss_pred             CCCCeEEEEECCCC------chHHHHHHHHhCCCeEEEEeCCCCCHH----HHccCCCCEEEECCCCCCcCCch------
Q 032797           22 NNKNPIIVIDNYDS------FTYNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSG------   85 (133)
Q Consensus        22 ~~~~~i~vid~~~~------~~~~i~~~l~~~G~~~~v~~~~~~~~~----~l~~~~~DgvIl~GG~~~~~d~~------   85 (133)
                      ..+.+|++|++..+      |..++.++|++.|+++++++....+.+    .+.  ++|+|+++||  +.....      
T Consensus        25 ~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG--~~~~l~~~L~~~  100 (206)
T 3l4e_A           25 LQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTGG--NTFFLLQELKRT  100 (206)
T ss_dssp             CTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECCS--CHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECCC--CHHHHHHHHHHC
Confidence            34689999975433      667788999999999887753322332    233  6999999885  333221      


Q ss_pred             HHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        86 ~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+.+.|++. ++++|++|||.|+|+++..
T Consensus       101 gl~~~l~~~~~~G~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A          101 GADKLILEEIAAGKLYIGESAGAVITSPN  129 (206)
T ss_dssp             THHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred             ChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence            135667764 6789999999999999863

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=98.92  E-value=4.1e-10  Score=84.80  Aligned_cols=88  Identities=9%  Similarity=0.112  Sum_probs=62.6

Q ss_pred             CCCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHH
Q 032797           23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQT   90 (133)
Q Consensus        23 ~~~~i~vid~~~------~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~   90 (133)
                      ...+|++|++..      +|..++.++|++.|+++..++..+...+++.  ++|+|+++||  +......      +.+.
T Consensus        30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpGG--~~~~~~~~l~~~gl~~~  105 (229)
T 1fy2_A           30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGG--NTFQLLKESRERGLLAP  105 (229)
T ss_dssp             TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECCS--CHHHHHHHHHHTTCHHH
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECCC--cHHHHHHHHHHCChHHH
Confidence            457999999864      5566788899999998776643211225564  6899999886  3332211      3466


Q ss_pred             HHH-hCCCCCEEEEechHHHHHHHh
Q 032797           91 VLE-LGPTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        91 i~~-~~~~~PvLGIClG~QlLa~a~  114 (133)
                      |++ +++++|++|+|.|+|+|+...
T Consensus       106 l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A          106 MADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             HHHHHHcCCEEEEECHHHHhhcccc
Confidence            776 467899999999999998854

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=98.78  E-value=2.2e-08  Score=71.05  Aligned_cols=93  Identities=14%  Similarity=0.163  Sum_probs=64.5

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc--CC
Q 032797           24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QD   83 (133)
Q Consensus        24 ~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~--~d   83 (133)
                      ++||+++-+. ++.    ....+.|++.|+++.++..+..              +.++....+||.|+++||++..  ..
T Consensus         2 ~~ki~il~~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~   80 (168)
T 3l18_A            2 SMKVLFLSAD-GFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRL   80 (168)
T ss_dssp             CCEEEEECCT-TBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT
T ss_pred             CcEEEEEeCC-CccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhcc
Confidence            5688887543 332    2366788999999988765320              1233332369999999997421  23


Q ss_pred             chHHHHHHHHh-CCCCCEEEEechHHHHHHH--hCCe
Q 032797           84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA--FGDC  117 (133)
Q Consensus        84 ~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a--~GG~  117 (133)
                      .....++++++ ++++|+.+||.|.++|+.+  +.|+
T Consensus        81 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~  117 (168)
T 3l18_A           81 NEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGR  117 (168)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTC
T ss_pred             CHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCC
Confidence            44567888885 7899999999999999986  5553

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=98.75  E-value=2.5e-08  Score=74.71  Aligned_cols=93  Identities=14%  Similarity=0.116  Sum_probs=64.5

Q ss_pred             CeEEEEECC----CCch-H---HHHHHHHhCCCeEEEEeCCCC--------------------------------CHHHH
Q 032797           25 NPIIVIDNY----DSFT-Y---NLCQYMGELGYHFEVYRNDEL--------------------------------TVEEL   64 (133)
Q Consensus        25 ~~i~vid~~----~~~~-~---~i~~~l~~~G~~~~v~~~~~~--------------------------------~~~~l   64 (133)
                      ++|+|+-+.    +++. .   ...+.|++.|++++++..+..                                +.+++
T Consensus         7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~   86 (232)
T 1vhq_A            7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA   86 (232)
T ss_dssp             CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred             CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHc
Confidence            478888541    3442 2   246788999999998865321                                01122


Q ss_pred             ccCCCCEEEECCCCCCc---CC----------chHHHHHHHHh-CCCCCEEEEechHHHHHHHhC-Ce
Q 032797           65 KRKNPRGVLISPGPGAP---QD----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG-DC  117 (133)
Q Consensus        65 ~~~~~DgvIl~GG~~~~---~d----------~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G-G~  117 (133)
                      ...+||+||++||.+..   .+          ...+.++++++ ++++|+.+||.|.++|+.++. |+
T Consensus        87 ~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~~Gr  154 (232)
T 1vhq_A           87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPL  154 (232)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCC
T ss_pred             CcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhcCCC
Confidence            12369999999997541   22          34567888885 789999999999999999987 74

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=98.63  E-value=9.5e-08  Score=72.55  Aligned_cols=90  Identities=14%  Similarity=0.153  Sum_probs=62.7

Q ss_pred             CeEEEEEC----CCCchH----HHHHHHHhCCCeEEEEeCCCC--------------------------------CHHHH
Q 032797           25 NPIIVIDN----YDSFTY----NLCQYMGELGYHFEVYRNDEL--------------------------------TVEEL   64 (133)
Q Consensus        25 ~~i~vid~----~~~~~~----~i~~~l~~~G~~~~v~~~~~~--------------------------------~~~~l   64 (133)
                      +||+++-.    ++++..    ...+.|++.|++++++..+..                                +++++
T Consensus        24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv  103 (242)
T 3l3b_A           24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQI  103 (242)
T ss_dssp             CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGC
T ss_pred             CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHC
Confidence            58888853    345532    256788999999998765321                                01122


Q ss_pred             ccCCCCEEEECCCCCCc--------------CCchHHHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797           65 KRKNPRGVLISPGPGAP--------------QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        65 ~~~~~DgvIl~GG~~~~--------------~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~  114 (133)
                      ...+||+|||+||.+..              .....+.++++++ ++++|+.+||.|.++|+.+-
T Consensus       104 ~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag  168 (242)
T 3l3b_A          104 RVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL  168 (242)
T ss_dssp             CGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             CcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence            22369999999997531              1234567888885 78999999999999999986

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=98.63  E-value=1e-07  Score=69.41  Aligned_cols=89  Identities=16%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC---------------CHHHH-ccCCCCEEEECCCCCCcC-
Q 032797           24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL---------------TVEEL-KRKNPRGVLISPGPGAPQ-   82 (133)
Q Consensus        24 ~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~---------------~~~~l-~~~~~DgvIl~GG~~~~~-   82 (133)
                      .++|+|+-+ +++.    ....+.|++.|+++.++..+..               +.++. ...+||.||++||.+.+. 
T Consensus         3 ~~~v~ill~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~   81 (197)
T 2rk3_A            3 SKRALVILA-KGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN   81 (197)
T ss_dssp             CCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred             CCEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence            467887765 3332    2366789999999988864321               12444 334799999999964332 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        83 --d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                        +...+.++++++ ++++|+.+||.|.++|+.+
T Consensus        82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           82 LSESAAVKEILKEQENRKGLIATICAGPTALLAH  115 (197)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence              234467888885 7899999999999999986

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=98.62  E-value=5.5e-08  Score=71.48  Aligned_cols=90  Identities=11%  Similarity=0.065  Sum_probs=62.6

Q ss_pred             CCeEEEEECCCCchH---HHHHHHHhCCCeEEEEeCCCC-----------------CHHHHccCCCCEEEECCCCCCcC-
Q 032797           24 KNPIIVIDNYDSFTY---NLCQYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQ-   82 (133)
Q Consensus        24 ~~~i~vid~~~~~~~---~i~~~l~~~G~~~~v~~~~~~-----------------~~~~l~~~~~DgvIl~GG~~~~~-   82 (133)
                      .++|+|+-+.+....   ...+.|++.|++++++..+..                 +.++....+||.||++||.+.+. 
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~   81 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   81 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence            357887755322222   356789999999988865321                 13344334799999999965433 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEechH-HHHHHH
Q 032797           83 --DSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA  113 (133)
Q Consensus        83 --d~~~~~~~i~~~-~~~~PvLGIClG~-QlLa~a  113 (133)
                        +...+.++++++ ++++|+.+||.|. ++|+.+
T Consensus        82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  116 (205)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence              234467888885 7899999999999 999875

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=98.61  E-value=1.6e-07  Score=67.82  Aligned_cols=90  Identities=17%  Similarity=0.254  Sum_probs=61.7

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC-------------------CHHHHccCCCCEEEECCCCC
Q 032797           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPG   79 (133)
Q Consensus        23 ~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~-------------------~~~~l~~~~~DgvIl~GG~~   79 (133)
                      .+++|+|+-+ +++.    ....+.|++.|++++++..+..                   +.++....+||.||++||.+
T Consensus         8 ~~~~v~il~~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~   86 (190)
T 2vrn_A            8 TGKKIAILAA-DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV   86 (190)
T ss_dssp             TTCEEEEECC-TTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred             CCCEEEEEeC-CCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence            3468888854 3443    2356788999999987754321                   11222223799999999974


Q ss_pred             Cc---CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           80 AP---QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        80 ~~---~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ++   .....+.++++++ ++++|+.+||.|.++|+.+
T Consensus        87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a  124 (190)
T 2vrn_A           87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET  124 (190)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred             hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence            33   2345577889885 7899999999999999986

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=98.59  E-value=1.3e-07  Score=68.48  Aligned_cols=90  Identities=10%  Similarity=0.103  Sum_probs=62.7

Q ss_pred             CCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCC-C--------------CHHHHccCCCCEEEECCCCCCcC-
Q 032797           23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQ-   82 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~-~--------------~~~~l~~~~~DgvIl~GG~~~~~-   82 (133)
                      +.+||+++-+ ++|..    ...+.|++.|++++++..+. .              +.++....+||.||++||...+. 
T Consensus         4 m~kkv~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~   82 (190)
T 4e08_A            4 MSKSALVILA-PGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNA   82 (190)
T ss_dssp             CCCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHH
T ss_pred             CCcEEEEEEC-CCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHH
Confidence            3457887754 34432    35678999999999886542 1              12333334799999999843221 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        83 --d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                        +...+.++++++ ++++|+.+||.|.++|+.+
T Consensus        83 ~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           83 MGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH  116 (190)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence              234467888885 7899999999999999986

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=98.49  E-value=2.6e-07  Score=66.77  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=60.0

Q ss_pred             CeEEEEECC---CCchHHHHHHHHh-CCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc-CCch
Q 032797           25 NPIIVIDNY---DSFTYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSG   85 (133)
Q Consensus        25 ~~i~vid~~---~~~~~~i~~~l~~-~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~-~d~~   85 (133)
                      ++|+++-+.   +.....+.+.|++ .|+++.++..+..              +.++....+||.||++||.+.. ....
T Consensus         2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~   81 (188)
T 2fex_A            2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA   81 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred             cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccH
Confidence            467776321   1122346778888 8999988765321              1222322379999999997521 2334


Q ss_pred             HHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        86 ~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+.++++++ ++++|+.+||.|.++|+.+
T Consensus        82 ~l~~~l~~~~~~~k~i~aiC~G~~~La~a  110 (188)
T 2fex_A           82 DLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             CCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            467888885 7899999999999999986

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=98.44  E-value=1.9e-07  Score=68.82  Aligned_cols=93  Identities=14%  Similarity=0.161  Sum_probs=62.4

Q ss_pred             cCCCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-C--------------CHHHHccCCCCEEEECCCCCC
Q 032797           20 SKNNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-L--------------TVEELKRKNPRGVLISPGPGA   80 (133)
Q Consensus        20 ~~~~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~-~--------------~~~~l~~~~~DgvIl~GG~~~   80 (133)
                      ...+.+||+++-+. +|.    ..+.+.|+..|++++++..+. .              +.++....+||.|||+||.+.
T Consensus         5 ~~~m~~~v~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~   83 (208)
T 3ot1_A            5 EQGMSKRILVPVAH-GSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG   83 (208)
T ss_dssp             ----CCEEEEEECT-TCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHH
T ss_pred             ccccCCeEEEEECC-CCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchH
Confidence            33455688888543 332    235678999999998886642 1              122332237999999999643


Q ss_pred             cC---CchHHHHHHHHh-CCCCCEEEEechH-HHHHHH
Q 032797           81 PQ---DSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA  113 (133)
Q Consensus        81 ~~---d~~~~~~~i~~~-~~~~PvLGIClG~-QlLa~a  113 (133)
                      +.   +...+.++++++ ++++|+.+||.|. .+|+.+
T Consensus        84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ  121 (208)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred             HHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence            32   344567888885 7899999999999 899874

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.43  E-value=5.6e-07  Score=64.11  Aligned_cols=90  Identities=12%  Similarity=0.143  Sum_probs=58.0

Q ss_pred             CCeEEEEECCC--C-chHHHHHHHHhCCCeEEEEeCCC---------------CCHHHH--ccCCCCEEEECCC--CCCc
Q 032797           24 KNPIIVIDNYD--S-FTYNLCQYMGELGYHFEVYRNDE---------------LTVEEL--KRKNPRGVLISPG--PGAP   81 (133)
Q Consensus        24 ~~~i~vid~~~--~-~~~~i~~~l~~~G~~~~v~~~~~---------------~~~~~l--~~~~~DgvIl~GG--~~~~   81 (133)
                      ++||+++-+..  + -.....+.+.+.|++++++..+.               .+.++.  ...+||.||++||  ..++
T Consensus         2 ~~~v~ill~~~~~g~~~~~~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~   81 (175)
T 3cne_A            2 AKKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVF   81 (175)
T ss_dssp             CCEEEEEECSSBCHHHHHHHHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGG
T ss_pred             CcEEEEEEecCcCCCccchhhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccH
Confidence            46788886531  2 00122333337789988886541               112333  2247999999999  5233


Q ss_pred             C------CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           82 Q------DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        82 ~------d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .      ....+.++++++ ++++|+.+||.|.++|+.+
T Consensus        82 ~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  120 (175)
T 3cne_A           82 QQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             GGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             HHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            2      123467888885 7899999999999999987

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=98.42  E-value=7.3e-07  Score=65.90  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=54.3

Q ss_pred             HHHHHHhCCCeEEEEeCCCC----CH-----------------------HHHccCCCCEEEECCCCCCc---CCchHHHH
Q 032797           40 LCQYMGELGYHFEVYRNDEL----TV-----------------------EELKRKNPRGVLISPGPGAP---QDSGISLQ   89 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~~~----~~-----------------------~~l~~~~~DgvIl~GG~~~~---~d~~~~~~   89 (133)
                      ..+.|++.|++++++..+..    +.                       +++...+||+||++||.+..   .....+.+
T Consensus        34 p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~  113 (224)
T 1u9c_A           34 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY  113 (224)
T ss_dssp             HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred             HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHH
Confidence            56788899999998865321    10                       11112379999999997643   23455778


Q ss_pred             HHHHh-CCCCCEEEEechHHHHHHH
Q 032797           90 TVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        90 ~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +++++ ++++||.+||.|.++|+.+
T Consensus       114 ~l~~~~~~~k~iaaiC~G~~~La~a  138 (224)
T 1u9c_A          114 VLQQFAEDGRIIAAVCHGPSGLVNA  138 (224)
T ss_dssp             HHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHHHHHCCCEEEEEChHHHHHHHc
Confidence            89885 7899999999999999976

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=98.41  E-value=7.4e-07  Score=65.83  Aligned_cols=89  Identities=6%  Similarity=-0.030  Sum_probs=59.9

Q ss_pred             CeEEEEEC--CC-CchHHHHHHHH--------hCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCC
Q 032797           25 NPIIVIDN--YD-SFTYNLCQYMG--------ELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPG   79 (133)
Q Consensus        25 ~~i~vid~--~~-~~~~~i~~~l~--------~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~   79 (133)
                      ++|+++-+  .+ .....+.+.|+        +.++++.++..+..              +.++....+||.||++||.+
T Consensus         6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~   85 (212)
T 3efe_A            6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTT   85 (212)
T ss_dssp             CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSC
T ss_pred             cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCc
Confidence            46776633  22 12335677787        66888888765321              12333334799999999976


Q ss_pred             CcC-CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           80 APQ-DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        80 ~~~-d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ... ....+.++++++ ++++++.+||.|..+|+.+
T Consensus        86 ~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a  121 (212)
T 3efe_A           86 WSEEIHQPILERIGQALKIGTIVAAICGATDALANM  121 (212)
T ss_dssp             TTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred             cccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence            332 233467888885 7889999999999999986

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=98.41  E-value=9.9e-07  Score=65.14  Aligned_cols=87  Identities=11%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             CeEEEEECCCCc----hHHHHHHHHhC-CCeEEEEeCCCC-------------CHHHHccCCCCEEEECCCCCCcCCchH
Q 032797           25 NPIIVIDNYDSF----TYNLCQYMGEL-GYHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGAPQDSGI   86 (133)
Q Consensus        25 ~~i~vid~~~~~----~~~i~~~l~~~-G~~~~v~~~~~~-------------~~~~l~~~~~DgvIl~GG~~~~~d~~~   86 (133)
                      ++|+++-+ +++    ...+.+.|++. ++++.++..+..             +.++. ..++|.||++||.+.......
T Consensus         4 ~kV~ill~-~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~~   81 (206)
T 3f5d_A            4 KKALFLIL-DQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNKK   81 (206)
T ss_dssp             EEEEEECC-SSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCHH
T ss_pred             cEEEEEEc-CCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCHH
Confidence            46776632 222    23467778877 888887764321             11222 237999999999753334445


Q ss_pred             HHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           87 SLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        87 ~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +.++++++ ++++|+.+||.|.++|+.+
T Consensus        82 l~~~l~~~~~~gk~iaaiC~G~~~La~a  109 (206)
T 3f5d_A           82 LLHFVKTAFQKNIPIAAICGAVDFLAKN  109 (206)
T ss_dssp             HHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence            67889885 7899999999999999986

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=98.39  E-value=1.8e-06  Score=73.97  Aligned_cols=92  Identities=12%  Similarity=0.032  Sum_probs=65.6

Q ss_pred             CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----CCHHHHccCCCCEEEECCCCCC-------cC---
Q 032797           22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----LTVEELKRKNPRGVLISPGPGA-------PQ---   82 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~-----~~~~~l~~~~~DgvIl~GG~~~-------~~---   82 (133)
                      ..+.||+||-..+.+.    ..+.++|++.|+.++++....     .+.++.....||+|||+||..+       +.   
T Consensus       535 l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr  614 (688)
T 3ej6_A          535 IATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLF  614 (688)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTS
T ss_pred             ccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhc
Confidence            5567898884322243    346789999999999986531     1233333457999999999654       12   


Q ss_pred             CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        83 d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .....+++++++ +.+|||.+||.|-|+|..+
T Consensus       615 ~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A  646 (688)
T 3ej6_A          615 PAGRPSQILTDGYRWGKPVAAVGSAKKALQSI  646 (688)
T ss_dssp             CTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             cCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence            234567889885 8899999999999999876

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=98.29  E-value=8.1e-07  Score=76.73  Aligned_cols=90  Identities=12%  Similarity=0.087  Sum_probs=63.5

Q ss_pred             CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc--
Q 032797           22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--   81 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~--   81 (133)
                      ..+.+|+|+-. ++|.    ..+.+.|++.|++++++.....              +.++.....||+|||+|| +..  
T Consensus       598 i~grKVaILla-DGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~L  675 (753)
T 3ttv_A          598 VKGRVVAILLN-DEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADI  675 (753)
T ss_dssp             CTTCEEEEECC-TTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGT
T ss_pred             CCCCEEEEEec-CCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHh
Confidence            45568888743 2442    2467889999999998754321              122233336999999999 422  


Q ss_pred             CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        82 ~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ......+++|+++ .+++||.+||.|.++|+.|
T Consensus       676 r~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A  708 (753)
T 3ttv_A          676 ADNGDANYYLMEAYKHLKPIALAGDARKFKATI  708 (753)
T ss_dssp             TTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred             hhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence            2445678899885 7899999999999999886

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=98.28  E-value=1.1e-06  Score=66.76  Aligned_cols=47  Identities=13%  Similarity=0.108  Sum_probs=38.0

Q ss_pred             CCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+||+|+++||.+...   ....+.++++++ ++++||.+||.|.++|+.+
T Consensus       104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A          104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred             hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence            3699999999986422   334567888885 7899999999999999987

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.27  E-value=2.6e-06  Score=68.06  Aligned_cols=90  Identities=17%  Similarity=0.264  Sum_probs=62.8

Q ss_pred             CCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCCC------------------------------CHHHHccCC
Q 032797           23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDEL------------------------------TVEELKRKN   68 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~~------------------------------~~~~l~~~~   68 (133)
                      +.+||+|+-. ++|..    ...+.|++.|++++++..+..                              +.++....+
T Consensus        11 ~~~kv~ill~-dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   89 (396)
T 3uk7_A           11 NSRTVLILCG-DYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK   89 (396)
T ss_dssp             CCCEEEEECC-TTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred             cCCeEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCccc
Confidence            3467887754 34432    356789999999988855311                              122222246


Q ss_pred             CCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           69 PRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        69 ~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ||.|+++||.+..  .+.....++++++ ++++|+.+||.|.++|+.+
T Consensus        90 ~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a  137 (396)
T 3uk7_A           90 YDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA  137 (396)
T ss_dssp             CSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             CCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence            9999999996521  2344567888885 7899999999999999986

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.27  E-value=2.5e-06  Score=68.17  Aligned_cols=91  Identities=18%  Similarity=0.271  Sum_probs=63.5

Q ss_pred             CCCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCC------------------------------CCHHHHccC
Q 032797           22 NNKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDE------------------------------LTVEELKRK   67 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~------------------------------~~~~~l~~~   67 (133)
                      ..++||+|+-. +++..    ...+.|++.|++++++..+.                              .+.++....
T Consensus       203 ~~~~ki~ill~-dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  281 (396)
T 3uk7_A          203 GANKRILFLCG-DYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSS  281 (396)
T ss_dssp             CCCCEEEEECC-TTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGG
T ss_pred             hccceEEEEec-CCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcc
Confidence            44568887754 34432    36678899999998875431                              112333223


Q ss_pred             CCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        68 ~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +||.||++||.+..  .......++++++ ++++|+.+||.|.++|+.+
T Consensus       282 ~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a  330 (396)
T 3uk7_A          282 SYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA  330 (396)
T ss_dssp             GCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             cCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence            79999999997521  2345567888885 7899999999999999986

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=98.25  E-value=2.3e-06  Score=62.77  Aligned_cols=91  Identities=13%  Similarity=0.057  Sum_probs=59.0

Q ss_pred             CCCCeEEEEECCCCchH----HHHHHHHhCC------CeEEEEeCCCC-------------CHHHHccCCCCEEEECCCC
Q 032797           22 NNKNPIIVIDNYDSFTY----NLCQYMGELG------YHFEVYRNDEL-------------TVEELKRKNPRGVLISPGP   78 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~----~i~~~l~~~G------~~~~v~~~~~~-------------~~~~l~~~~~DgvIl~GG~   78 (133)
                      .++++|+|+-+. ++..    ...+.|+..+      +++.++..+..             +.++....+||.|||+||.
T Consensus         3 ~~~~~v~ill~~-g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~   81 (202)
T 3gra_A            3 LAPYRVDFILLE-HFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGL   81 (202)
T ss_dssp             --CEEEEEEECT-TBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCT
T ss_pred             CCcEEEEEEEeC-CCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCC
Confidence            345678877543 4422    2456666543      77777654311             1122212479999999997


Q ss_pred             CCcCCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           79 GAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        79 ~~~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +.......+.+++++. ++++++.+||-|..+|+.+
T Consensus        82 ~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  117 (202)
T 3gra_A           82 RTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA  117 (202)
T ss_dssp             TCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred             chhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence            6443225577888885 7889999999999999986

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.24  E-value=1.3e-06  Score=70.05  Aligned_cols=91  Identities=16%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             CCCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCCCC----------------HHHHccCCCCEEEECCCCCCc
Q 032797           22 NNKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP   81 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~----------------~~~l~~~~~DgvIl~GG~~~~   81 (133)
                      .+.++|+|+-+ ++|..    .+.+.|+..|+++.++..+...                .+++...+||.|||+||.+..
T Consensus         8 ~~mkkV~ILl~-dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~   86 (365)
T 3fse_A            8 SGKKKVAILIE-QAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPD   86 (365)
T ss_dssp             ---CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHH
T ss_pred             CCceEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchh
Confidence            34467887754 34432    3667899999999887653211                112222259999999997421


Q ss_pred             --CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           82 --QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        82 --~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                        .....+.++++++ .+++||.+||.|..+|+.+
T Consensus        87 ~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A  121 (365)
T 3fse_A           87 KMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG  121 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence              2344567888885 7899999999999999985

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=98.21  E-value=1.4e-06  Score=64.17  Aligned_cols=91  Identities=8%  Similarity=0.099  Sum_probs=57.6

Q ss_pred             CCCCCeEEEEECCCCc---hHHHHHHHHhC-------CCeEEEEeCCC--------------CCHHHHccCCCCEEEECC
Q 032797           21 KNNKNPIIVIDNYDSF---TYNLCQYMGEL-------GYHFEVYRNDE--------------LTVEELKRKNPRGVLISP   76 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~---~~~i~~~l~~~-------G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~G   76 (133)
                      +.+.++|+|+-+.+-.   .....+.|+.+       ++++.++..+.              .+.+++  .++|.||++|
T Consensus         5 ~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~--~~~D~livpG   82 (209)
T 3er6_A            5 NKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSF--DFTNILIIGS   82 (209)
T ss_dssp             --CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGC--SCCSEEEECC
T ss_pred             CCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCcccc--CCCCEEEECC
Confidence            4455678777432211   12345666553       36777664431              112333  3799999999


Q ss_pred             CCCCc----CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           77 GPGAP----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        77 G~~~~----~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      |.+..    .+...+.++++++ ++++++.+||-|..+|+.+
T Consensus        83 g~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  124 (209)
T 3er6_A           83 IGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA  124 (209)
T ss_dssp             CSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             CCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            86522    2345577889885 7899999999999999986

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=98.15  E-value=3.6e-06  Score=63.76  Aligned_cols=47  Identities=13%  Similarity=0.118  Sum_probs=38.0

Q ss_pred             CCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+||+|+++||.+...   +...+.++++++ ++++||.+||.|..+|+.+
T Consensus        97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a  147 (244)
T 3kkl_A           97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL  147 (244)
T ss_dssp             GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence            3699999999976422   334567888885 7899999999999999877

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=98.14  E-value=7.6e-06  Score=61.28  Aligned_cols=87  Identities=10%  Similarity=0.055  Sum_probs=60.3

Q ss_pred             CCeEEEEECCCCchH----HHHHHHHh-CCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc--C
Q 032797           24 KNPIIVIDNYDSFTY----NLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--Q   82 (133)
Q Consensus        24 ~~~i~vid~~~~~~~----~i~~~l~~-~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~--~   82 (133)
                      .++|+++-+ ++|..    .+.+.|+. .++++.++..+..              +.++.  .+||.|+++||++..  .
T Consensus         5 ~~~V~ill~-~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~g~~~~~   81 (231)
T 3noq_A            5 AVQIGFLLF-PEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADC--PPLDVICIPGGTGVGALM   81 (231)
T ss_dssp             CEEEEEECC-TTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTC--CCCSEEEECCSTTHHHHT
T ss_pred             cEEEEEEEe-CCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHC--CcCCEEEECCCCChhhhc
Confidence            467877754 34432    35677887 6888887754310              11222  269999999997632  2


Q ss_pred             CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        83 d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ....+.+++++. .+++++.+||.|..+|+.+
T Consensus        82 ~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a  113 (231)
T 3noq_A           82 EDPQALAFIRQQAARARYVTSVSTGSLVLGAA  113 (231)
T ss_dssp             TCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             cCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            445577899885 8899999999999999985

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=98.12  E-value=3.2e-06  Score=63.58  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=37.5

Q ss_pred             CCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           68 NPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        68 ~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +||+||++||.+...   ....+.++++++ ++++||.+||.|.++|+.+
T Consensus        98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a  147 (243)
T 1rw7_A           98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL  147 (243)
T ss_dssp             GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence            699999999976432   234567888885 7899999999999999886

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=98.08  E-value=9.4e-06  Score=62.89  Aligned_cols=75  Identities=15%  Similarity=0.158  Sum_probs=53.8

Q ss_pred             HHHHHHhCCCeEEEEeCCCC--C-----------------------------HHHH-----ccCCCCEEEECCCCCCcC-
Q 032797           40 LCQYMGELGYHFEVYRNDEL--T-----------------------------VEEL-----KRKNPRGVLISPGPGAPQ-   82 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~~~--~-----------------------------~~~l-----~~~~~DgvIl~GG~~~~~-   82 (133)
                      ..+.|++.|++++++..+..  .                             .+++     ...+||+|||+||.+... 
T Consensus        81 p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~  160 (291)
T 1n57_A           81 PLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG  160 (291)
T ss_dssp             HHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSS
T ss_pred             HHHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchhhh
Confidence            56678899999998864321  0                             1221     124799999999976442 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        83 --d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~  114 (133)
                        +...+.++++++ +++++|.+||.|..+|+.+-
T Consensus       161 l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~  195 (291)
T 1n57_A          161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR  195 (291)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence              234567888885 78999999999999887763

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=98.07  E-value=1.4e-05  Score=60.82  Aligned_cols=89  Identities=13%  Similarity=0.166  Sum_probs=61.1

Q ss_pred             CCCeEEEEECCCCchH----HHHHHH-HhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCC-CC--
Q 032797           23 NKNPIIVIDNYDSFTY----NLCQYM-GELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGP-GA--   80 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~----~i~~~l-~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~-~~--   80 (133)
                      +.++|+|+-+ ++|..    ...+.| +..|+++.++..+..              +.++.+ ..||.|||+||. +.  
T Consensus        22 m~~~I~ill~-~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~   99 (253)
T 3ewn_A           22 GDEQIAMLVY-PGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA   99 (253)
T ss_dssp             CCCEEEEECC-TTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred             CCeEEEEEeC-CCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence            4468888854 34432    356778 457899988755321              112222 257999999997 42  


Q ss_pred             cCCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        81 ~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ......+.++|++. +++++|.+||-|..+|+.+
T Consensus       100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A  133 (253)
T 3ewn_A          100 AASDAETLAFMADRGARAKYITSVCSGSLILGAA  133 (253)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            22445678899885 8899999999999999986

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=98.05  E-value=6.8e-06  Score=70.53  Aligned_cols=92  Identities=11%  Similarity=0.104  Sum_probs=64.7

Q ss_pred             CCCCeEEEEEC-CCCch----HHHHHHHHhCCCeEEEEeCCCC-----CHHHHccCCCCEEEECCCCCC-----------
Q 032797           22 NNKNPIIVIDN-YDSFT----YNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGA-----------   80 (133)
Q Consensus        22 ~~~~~i~vid~-~~~~~----~~i~~~l~~~G~~~~v~~~~~~-----~~~~l~~~~~DgvIl~GG~~~-----------   80 (133)
                      ..++||+|+-. .+++.    ..+.+.|++.|++++++.....     +.++.....||+|||+||..+           
T Consensus       527 l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~  606 (688)
T 2iuf_A          527 LDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP  606 (688)
T ss_dssp             CTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred             CCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence            44568888854 13443    2477889999999999865321     122223347999999999543           


Q ss_pred             -----cC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           81 -----PQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        81 -----~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                           +.   ..+...+++++. ..+|||.+||.|-++|..+
T Consensus       607 ~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a  648 (688)
T 2iuf_A          607 SAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG  648 (688)
T ss_dssp             CTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred             ccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence                 22   334567888884 7889999999999999875

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=97.98  E-value=1.4e-05  Score=69.02  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCcC--
Q 032797           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ--   82 (133)
Q Consensus        23 ~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~~--   82 (133)
                      .+++|+|+-. +++.    ..+.+.|+..|++++++.....              +.++.....||+|||+||.+.+.  
T Consensus       533 ~~rkVaILl~-dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l  611 (715)
T 1sy7_A          533 KSRRVAIIIA-DGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL  611 (715)
T ss_dssp             TTCEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred             CCCEEEEEEc-CCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhh
Confidence            3468888854 3332    2366788999999998865321              11222223699999999853322  


Q ss_pred             -CchHHHHHHHHh-CCCCCEEEEechHHHHHHHhC
Q 032797           83 -DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (133)
Q Consensus        83 -d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G  115 (133)
                       ....+.++|+++ ++++||.+||.|..+|+.++|
T Consensus       612 ~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG  646 (715)
T 1sy7_A          612 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA  646 (715)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence             344567888885 789999999999999999943

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=97.89  E-value=4.4e-06  Score=61.69  Aligned_cols=88  Identities=14%  Similarity=0.232  Sum_probs=57.7

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhC--CCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc-
Q 032797           23 NKNPIIVIDNYDSFT----YNLCQYMGEL--GYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-   81 (133)
Q Consensus        23 ~~~~i~vid~~~~~~----~~i~~~l~~~--G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~-   81 (133)
                      .+++|+|+-+. +|.    ..+.+.|+..  ++++.++..+..              +.++.  ..+|.||++||++.. 
T Consensus         3 ~~~~V~ill~~-g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~~~~~   79 (211)
T 3mgk_A            3 LSYRIDVLLFN-KFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDE--NIEKILFVPGGSGTRE   79 (211)
T ss_dssp             -CEEEEEECCT-TCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCS--SSEEEEEECCSTHHHH
T ss_pred             CceEEEEEEeC-CcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhC--CCCCEEEECCCcchhh
Confidence            34678777442 332    2356778876  477777644310              11111  248999999997532 


Q ss_pred             -CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           82 -QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        82 -~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                       .....+.++++++ ++++++.+||-|..+|+.+
T Consensus        80 ~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a  113 (211)
T 3mgk_A           80 KVNDDNFINFIGNMVKESKYIISVCTGSALLSKA  113 (211)
T ss_dssp             HTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence             2344567888885 7889999999999999985

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=97.76  E-value=4.1e-05  Score=55.74  Aligned_cols=86  Identities=14%  Similarity=0.074  Sum_probs=53.2

Q ss_pred             CCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCC-----------------CCHHHHc-----cCCCCEEEECCC
Q 032797           24 KNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDE-----------------LTVEELK-----RKNPRGVLISPG   77 (133)
Q Consensus        24 ~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~-----------------~~~~~l~-----~~~~DgvIl~GG   77 (133)
                      .+||+|+-+ ++|..    ...+.|++.|++++++....                 .+.+++.     ..+||.||++||
T Consensus         4 M~kV~ill~-dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG   82 (194)
T 4gdh_A            4 MVKVCLFVA-DGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG   82 (194)
T ss_dssp             -CCEEEEEE-TTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred             CCEEEEEEC-CCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence            357777743 24422    35678999999887653210                 0111111     125899999999


Q ss_pred             CCCcC---CchHHHHHHHHh-C-CCCCEEEEechHHHH
Q 032797           78 PGAPQ---DSGISLQTVLEL-G-PTVPLFGVCMGLQCI  110 (133)
Q Consensus        78 ~~~~~---d~~~~~~~i~~~-~-~~~PvLGIClG~QlL  110 (133)
                      ...+.   +.....++++++ + .++++..||.|..++
T Consensus        83 ~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~  120 (194)
T 4gdh_A           83 GLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTA  120 (194)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred             chhHhHhhhCHHHHHHHHHhhhcCCceEEeecccccch
Confidence            54332   345567889885 4 579999999998544

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=97.59  E-value=7.7e-05  Score=56.13  Aligned_cols=91  Identities=20%  Similarity=0.316  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEECCCCchH----HHHHHHHhCC--CeEEEEeCCCC--------------CHHHHccCCCCEEEECCC-CC
Q 032797           21 KNNKNPIIVIDNYDSFTY----NLCQYMGELG--YHFEVYRNDEL--------------TVEELKRKNPRGVLISPG-PG   79 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~----~i~~~l~~~G--~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG-~~   79 (133)
                      +...++|+|+-+ ++|..    .+.+.|+..+  +++.++. +..              +.++.  .+||.|||+|| ++
T Consensus        17 ~~~~~kV~ill~-dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g   92 (236)
T 3bhn_A           17 FQGMYKVGIVLF-DDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRG   92 (236)
T ss_dssp             ---CEEEEEECC-TTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTH
T ss_pred             cCCCCEEEEEeC-CCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccc--cCCCEEEEcCCccC
Confidence            344567887754 34422    3566777755  6777665 310              12222  37999999999 54


Q ss_pred             Cc--CCchHHHHHHHHhCCCC-CEEEEechHHHHHHH--hCC
Q 032797           80 AP--QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA--FGD  116 (133)
Q Consensus        80 ~~--~d~~~~~~~i~~~~~~~-PvLGIClG~QlLa~a--~GG  116 (133)
                      ..  .......+++ ...+++ ++.+||-|..+|+.+  +.|
T Consensus        93 ~~~l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~AGLL~G  133 (236)
T 3bhn_A           93 IPAALQDENFMSAL-KLDPSRQLIGSICAGSFVLHELGLLKG  133 (236)
T ss_dssp             HHHHHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHTTTTTT
T ss_pred             HhhhccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHcCCCCC
Confidence            32  1334566777 655566 999999999999987  444

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=95.73  E-value=0.054  Score=34.86  Aligned_cols=82  Identities=15%  Similarity=0.200  Sum_probs=49.6

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCE
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL  100 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~~~~Pv  100 (133)
                      ..+++|+++|........+.+.|++.|+.+..........+.+....+|.+|+--.  -+. +.-...+.+++.....|+
T Consensus         5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~i   82 (130)
T 3eod_A            5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA--MPRMNGLKLLEHIRNRGDQTPV   82 (130)
T ss_dssp             TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-------CHHHHHHHHHTTCCCCE
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCE
Confidence            45679999987555566788889999998765432111112233457998888322  111 222345566665567899


Q ss_pred             EEEec
Q 032797          101 FGVCM  105 (133)
Q Consensus       101 LGICl  105 (133)
                      +-+.-
T Consensus        83 i~~t~   87 (130)
T 3eod_A           83 LVISA   87 (130)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            88864

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=95.62  E-value=0.0028  Score=49.14  Aligned_cols=87  Identities=11%  Similarity=0.174  Sum_probs=55.9

Q ss_pred             CCeEEEEECCC----CchHHHHHHHHhCCC-eEEEEeCCCC----CH---HHHccCCCCEEEECCCCCCcC----CchHH
Q 032797           24 KNPIIVIDNYD----SFTYNLCQYMGELGY-HFEVYRNDEL----TV---EELKRKNPRGVLISPGPGAPQ----DSGIS   87 (133)
Q Consensus        24 ~~~i~vid~~~----~~~~~i~~~l~~~G~-~~~v~~~~~~----~~---~~l~~~~~DgvIl~GG~~~~~----d~~~~   87 (133)
                      ..+|++|-.-.    .+...+.+.+++.|+ .+++++....    +.   +.+  .+.|+|+++||...-.    ....+
T Consensus        56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l--~~ad~I~v~GGnt~~l~~~l~~t~l  133 (291)
T 3en0_A           56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFV--EQCTGIFMTGGDQLRLCGLLADTPL  133 (291)
T ss_dssp             GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHH--HHCSEEEECCSCHHHHHHHHTTCHH
T ss_pred             CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHH--hcCCEEEECCCCHHHHHHHHHhCCH
Confidence            57999995432    234456778888999 6776654211    11   122  2699999999842110    11224


Q ss_pred             HHHHHH-hCCC-CCEEEEechHHHHHH
Q 032797           88 LQTVLE-LGPT-VPLFGVCMGLQCIGE  112 (133)
Q Consensus        88 ~~~i~~-~~~~-~PvLGIClG~QlLa~  112 (133)
                      .+.|++ ++++ .|+.|.|-|+-+++.
T Consensus       134 ~~~L~~~~~~G~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          134 MDRIRQRVHNGEISLAGTSAGAAVMGH  160 (291)
T ss_dssp             HHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred             HHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence            567776 4667 999999999998865

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*

Probab=95.53  E-value=0.044  Score=42.14  Aligned_cols=72  Identities=22%  Similarity=0.302  Sum_probs=50.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG  102 (133)
                      .|+|+++-+.+.....+.++|++.|+++.+....   .+.+  ..+|.+|..||-      +.++...+.+ .. +|++|
T Consensus        29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~---~~~~--~~~DlvIvlGGD------GT~L~aa~~~~~~-~PilG   96 (278)
T 1z0s_A           29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP---SEEL--ENFDFIVSVGGD------GTILRILQKLKRC-PPIFG   96 (278)
T ss_dssp             -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC---CGGG--GGSSEEEEEECH------HHHHHHHTTCSSC-CCEEE
T ss_pred             ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccc---cccc--CCCCEEEEECCC------HHHHHHHHHhCCC-CcEEE
Confidence            4789998765444667889999999988765432   1222  268999999983      4455555555 34 99999


Q ss_pred             EechH
Q 032797          103 VCMGL  107 (133)
Q Consensus       103 IClG~  107 (133)
                      |=.|.
T Consensus        97 IN~G~  101 (278)
T 1z0s_A           97 INTGR  101 (278)
T ss_dssp             EECSS
T ss_pred             ECCCC
Confidence            99873

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=95.42  E-value=0.037  Score=36.16  Aligned_cols=85  Identities=9%  Similarity=0.185  Sum_probs=50.6

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHH--hCCC
Q 032797           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLE--LGPT   97 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~--~~~~   97 (133)
                      ....++|+|+|........+.+.|++.|+++..........+.+....+|.||+--.  -|...+ .+.+.+++  ...+
T Consensus         3 ~~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~   80 (140)
T 3grc_A            3 LAPRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQDGVSLIRALRRDSRTRD   80 (140)
T ss_dssp             --CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHTSGGGTT
T ss_pred             CCCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCcccCC
Confidence            345679999987555566788889999998765432111122233457998888322  122222 34555665  3467


Q ss_pred             CCEEEEechH
Q 032797           98 VPLFGVCMGL  107 (133)
Q Consensus        98 ~PvLGIClG~  107 (133)
                      .|++-+.-..
T Consensus        81 ~~ii~~s~~~   90 (140)
T 3grc_A           81 LAIVVVSANA   90 (140)
T ss_dssp             CEEEEECTTH
T ss_pred             CCEEEEecCC
Confidence            8999887554

>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}

Probab=95.15  E-value=0.083  Score=33.88  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccC-CCCEEEECCCCCCcC-Cch-HHHHHHHHhCCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ-DSG-ISLQTVLELGPTV   98 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~-~~DgvIl~GG~~~~~-d~~-~~~~~i~~~~~~~   98 (133)
                      ..+++|+|+|........+.+.|+..|+++..........+.+... .+|.+|+--.  .+. ..+ ...+.+++.....
T Consensus         3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~--l~~~~~g~~~~~~l~~~~~~~   80 (132)
T 2rdm_A            3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIR--FCQPPDGWQVARVAREIDPNM   80 (132)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESC--CSSSSCHHHHHHHHHHHCTTC
T ss_pred             CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeee--CCCCCCHHHHHHHHHhcCCCC
Confidence            3457899998765556678888888899876543211111223333 6998887322  121 122 3445566555678


Q ss_pred             CEEEEech
Q 032797           99 PLFGVCMG  106 (133)
Q Consensus        99 PvLGIClG  106 (133)
                      |++-+.-.
T Consensus        81 ~ii~~s~~   88 (132)
T 2rdm_A           81 PIVYISGH   88 (132)
T ss_dssp             CEEEEESS
T ss_pred             CEEEEeCC
Confidence            99888643

>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}

Probab=95.05  E-value=0.019  Score=37.58  Aligned_cols=86  Identities=17%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             cccCCCCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHhC
Q 032797           18 KKSKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG   95 (133)
Q Consensus        18 ~~~~~~~~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~~   95 (133)
                      .+.+...++|+|+|........+.+.|++.| +++..........+.+....+|.+|+--.  -|... -.+.+.+++..
T Consensus         8 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~   85 (135)
T 3snk_A            8 KVTPTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLG--GGDLLGKPGIVEARALW   85 (135)
T ss_dssp             -----CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEE--TTGGGGSTTHHHHHGGG
T ss_pred             cccCCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCC--CCCchHHHHHHHHHhhC
Confidence            3444556789999876556667888899888 87765432111111222347898887211  11111 12455666654


Q ss_pred             CCCCEEEEec
Q 032797           96 PTVPLFGVCM  105 (133)
Q Consensus        96 ~~~PvLGICl  105 (133)
                      .+.|++-+.-
T Consensus        86 ~~~~ii~~s~   95 (135)
T 3snk_A           86 ATVPLIAVSD   95 (135)
T ss_dssp             TTCCEEEEES
T ss_pred             CCCcEEEEeC
Confidence            5799998864

>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}

Probab=94.76  E-value=0.091  Score=35.17  Aligned_cols=81  Identities=20%  Similarity=0.242  Sum_probs=48.6

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV   98 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~   98 (133)
                      ..+++|+|+|........+.+.|++.|+.+..........+.+....+|.||+-=.  -|...+ .+.+.+++.  ...+
T Consensus         5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~   82 (154)
T 3gt7_A            5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEMDGYALCRWLKGQPDLRTI   82 (154)
T ss_dssp             --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTS
T ss_pred             cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCCCcCCC
Confidence            34679999987655666788889989988765532111112233457998888321  122222 345566654  2678


Q ss_pred             CEEEEe
Q 032797           99 PLFGVC  104 (133)
Q Consensus        99 PvLGIC  104 (133)
                      |++-+.
T Consensus        83 pii~~s   88 (154)
T 3gt7_A           83 PVILLT   88 (154)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            999887

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=94.74  E-value=0.042  Score=35.97  Aligned_cols=81  Identities=11%  Similarity=0.089  Sum_probs=48.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (133)
                      +.++|+|+|........+.+.|++.|+++..........+.+....+|.+|+--   .+...+ ...+.+++...+.|++
T Consensus         3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~pii   79 (142)
T 2qxy_A            3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTKVA   79 (142)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCCEE
Confidence            456899998765556678888998999876543211112223345799888833   111111 2344555545579999


Q ss_pred             EEech
Q 032797          102 GVCMG  106 (133)
Q Consensus       102 GIClG  106 (133)
                      .+.--
T Consensus        80 ~ls~~   84 (142)
T 2qxy_A           80 VLSAY   84 (142)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            88643

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=94.68  E-value=0.098  Score=34.77  Aligned_cols=84  Identities=15%  Similarity=0.207  Sum_probs=50.6

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv  100 (133)
                      ..+++|+|+|........+.+.|+..|+++............+....+|.+|+--.  -+...+ ...+.+++.....|+
T Consensus         5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~i   82 (154)
T 2rjn_A            5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMR--MPEMGGEVFLEQVAKSYPDIER   82 (154)
T ss_dssp             CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESS--CSSSCHHHHHHHHHHHCTTSEE
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCcE
Confidence            34578999987655666788889888988765432111112233347998888322  122222 344556655567899


Q ss_pred             EEEechH
Q 032797          101 FGVCMGL  107 (133)
Q Consensus       101 LGIClG~  107 (133)
                      +-+.-..
T Consensus        83 i~ls~~~   89 (154)
T 2rjn_A           83 VVISGYA   89 (154)
T ss_dssp             EEEECGG
T ss_pred             EEEecCC
Confidence            8887543

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=94.52  E-value=0.067  Score=34.90  Aligned_cols=82  Identities=13%  Similarity=0.243  Sum_probs=48.7

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHH--hCCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGPTV   98 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~--~~~~~   98 (133)
                      ..+++|+|+|........+.+.|+..|+++..........+.+....+|.+|+--.  .+... ..+.+.+++  .....
T Consensus         5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~~   82 (142)
T 3cg4_A            5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIM--MPGMDGWDTIRAILDNSLEQGI   82 (142)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESC--CSSSCHHHHHHHHHHTTCCTTE
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhcccCCC
Confidence            45678999987655666788889888987664432111112233346898887322  12222 234566666  34578


Q ss_pred             CEEEEec
Q 032797           99 PLFGVCM  105 (133)
Q Consensus        99 PvLGICl  105 (133)
                      |++.+.-
T Consensus        83 pii~~s~   89 (142)
T 3cg4_A           83 AIVMLTA   89 (142)
T ss_dssp             EEEEEEC
T ss_pred             CEEEEEC
Confidence            8888764

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=94.46  E-value=0.091  Score=34.98  Aligned_cols=82  Identities=17%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv  100 (133)
                      ...++|+|+|........+.+.|++.|+.+..........+.+....+|.+|+--.  -+...+ .+.+.+++...+.|+
T Consensus        12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~i   89 (153)
T 3hv2_A           12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAH--LPQMDGPTLLARIHQQYPSTTR   89 (153)
T ss_dssp             CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTSEE
T ss_pred             cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCC--CCcCcHHHHHHHHHhHCCCCeE
Confidence            44578999987655666788889988987765432111122233457998888321  122222 345566665567899


Q ss_pred             EEEec
Q 032797          101 FGVCM  105 (133)
Q Consensus       101 LGICl  105 (133)
                      +-+.-
T Consensus        90 i~~s~   94 (153)
T 3hv2_A           90 ILLTG   94 (153)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            87764

>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}

Probab=94.41  E-value=0.086  Score=34.18  Aligned_cols=83  Identities=12%  Similarity=0.053  Sum_probs=48.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC---CcCCc-hHHHHHHHHhCCCCC
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---APQDS-GISLQTVLELGPTVP   99 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~---~~~d~-~~~~~~i~~~~~~~P   99 (133)
                      .++|+|+|........+.+.|+..|+++..........+.+....+|.+|+--...   .+... -...+.+++.....|
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~   82 (140)
T 2qr3_A            3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP   82 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred             CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence            47899998765566678888988898876543211111223334689888833211   00222 234455665556799


Q ss_pred             EEEEech
Q 032797          100 LFGVCMG  106 (133)
Q Consensus       100 vLGIClG  106 (133)
                      ++.+.--
T Consensus        83 ii~ls~~   89 (140)
T 2qr3_A           83 VVLFTAY   89 (140)
T ss_dssp             EEEEEEG
T ss_pred             EEEEECC
Confidence            9988743

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=94.27  E-value=0.11  Score=34.60  Aligned_cols=82  Identities=15%  Similarity=0.193  Sum_probs=47.8

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (133)
                      .+++|+|+|........+.+.|+..|+++............+....+|.+|+--...+ .+.....+.++......|++.
T Consensus         2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~   80 (155)
T 1qkk_A            2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLPMIL   80 (155)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEE
Confidence            3578999987655666788889889998765432100011122346898888332111 122234555665556799998


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        81 ls~   83 (155)
T 1qkk_A           81 VTG   83 (155)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            864

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=94.27  E-value=0.072  Score=35.03  Aligned_cols=82  Identities=11%  Similarity=0.114  Sum_probs=48.9

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHH--hCCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGPTV   98 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~--~~~~~   98 (133)
                      .+.++|+|+|........+.+.|+..|+++............+....+|.+|+--.  .+... -.+.+.+++  .....
T Consensus         6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~~   83 (147)
T 2zay_A            6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEAN--MPKISGMDLFNSLKKNPQTASI   83 (147)
T ss_dssp             --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHTSTTTTTS
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCC--CCCCCHHHHHHHHHcCcccCCC
Confidence            34578999998767777888889888887764432100112222347998888322  12222 234555665  34678


Q ss_pred             CEEEEec
Q 032797           99 PLFGVCM  105 (133)
Q Consensus        99 PvLGICl  105 (133)
                      |++.+.-
T Consensus        84 pii~ls~   90 (147)
T 2zay_A           84 PVIALSG   90 (147)
T ss_dssp             CEEEEES
T ss_pred             CEEEEeC
Confidence            9998874

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}

Probab=94.20  E-value=0.15  Score=33.33  Aligned_cols=80  Identities=14%  Similarity=0.279  Sum_probs=47.1

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcC-Cch-HHHHHHHHhCCCCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQ-DSG-ISLQTVLELGPTVP   99 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~-d~~-~~~~~i~~~~~~~P   99 (133)
                      .+++|+|+|........+.+.|++.|+++..........+.+.. ..+|.+|+--.  -|. ..+ .+.+.+++. .+.|
T Consensus         4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~-~~~~   80 (140)
T 3h5i_A            4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIE--LGEGMDGVQTALAIQQI-SELP   80 (140)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESS--CSSSCCHHHHHHHHHHH-CCCC
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEecc--CCCCCCHHHHHHHHHhC-CCCC
Confidence            45799999876556667888899999887654321111222333 47998887321  111 122 344555554 5789


Q ss_pred             EEEEec
Q 032797          100 LFGVCM  105 (133)
Q Consensus       100 vLGICl  105 (133)
                      ++-+.-
T Consensus        81 ii~ls~   86 (140)
T 3h5i_A           81 VVFLTA   86 (140)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            887764

>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}

Probab=94.19  E-value=0.094  Score=32.48  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=47.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHhC--CCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG--PTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~~--~~~Pv  100 (133)
                      +++|+++|........+.+.|+..|+++............+....+|.+|+--..  +... ....+.+++..  ...|+
T Consensus         1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~~~~~~~~~~l~~~~~~~~~~i   78 (119)
T 2j48_A            1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PDQSCLLLLQHLREHQADPHPPL   78 (119)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TCCTHHHHHHHHHHTCCCSSCCC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CCCCHHHHHHHHHhccccCCCCE
Confidence            3689999876555667888899899987654321101122233478988884321  2222 23455566543  67898


Q ss_pred             EEEec
Q 032797          101 FGVCM  105 (133)
Q Consensus       101 LGICl  105 (133)
                      +.+.-
T Consensus        79 i~~~~   83 (119)
T 2j48_A           79 VLFLG   83 (119)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            87763

>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A

Probab=94.06  E-value=0.11  Score=33.71  Aligned_cols=80  Identities=9%  Similarity=0.036  Sum_probs=47.7

Q ss_pred             cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCC-CC
Q 032797           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP-TV   98 (133)
Q Consensus        20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~-~~   98 (133)
                      ....+++|+|+|........+.+.|+..|+.+............+....+|.+| .++    .+.-...+.+++. . ..
T Consensus        14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~----~~g~~~~~~l~~~-~~~~   87 (137)
T 2pln_A           14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEK-HSSI   87 (137)
T ss_dssp             -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECS----TTHHHHHHHHHHH-STTS
T ss_pred             cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcC----ccHHHHHHHHHhc-CCCc
Confidence            335667999998755556678888888898776443211111223334799888 221    1122344555555 5 78


Q ss_pred             CEEEEec
Q 032797           99 PLFGVCM  105 (133)
Q Consensus        99 PvLGICl  105 (133)
                      |++-+.-
T Consensus        88 ~ii~ls~   94 (137)
T 2pln_A           88 VVLVSSD   94 (137)
T ss_dssp             EEEEEES
T ss_pred             cEEEEeC
Confidence            9988864

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=94.00  E-value=0.14  Score=33.32  Aligned_cols=81  Identities=15%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv  100 (133)
                      .++|+|+|........+.+.|++.|+.+..........+.+.  ...+|.+|+--.  -+...+ .+.+.+++.....|+
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~i   80 (143)
T 3jte_A            3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMK--MPKLSGMDILREIKKITPHMAV   80 (143)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESC--CSSSCHHHHHHHHHHHCTTCEE
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCCeE
Confidence            468999987555566788889989987765432111112232  347998888322  122222 345566665567899


Q ss_pred             EEEech
Q 032797          101 FGVCMG  106 (133)
Q Consensus       101 LGIClG  106 (133)
                      +-+.--
T Consensus        81 i~ls~~   86 (143)
T 3jte_A           81 IILTGH   86 (143)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            887753

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=93.94  E-value=0.077  Score=33.97  Aligned_cols=80  Identities=14%  Similarity=0.270  Sum_probs=48.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv  100 (133)
                      +++|+|+|........+.+.|++.|+++..........+.+....+|.+|+--.  -|...+ ...+.+++.  ..+.|+
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~~~~i   80 (127)
T 3i42_A            3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPMEKTSKF   80 (127)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred             cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhccCCCCE
Confidence            468999987555666788889999987665432111112233457998888321  122222 345666665  567888


Q ss_pred             EEEec
Q 032797          101 FGVCM  105 (133)
Q Consensus       101 LGICl  105 (133)
                      +-+.-
T Consensus        81 i~~s~   85 (127)
T 3i42_A           81 VAVSG   85 (127)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            87763

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=93.80  E-value=0.12  Score=33.80  Aligned_cols=81  Identities=10%  Similarity=0.159  Sum_probs=48.3

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHH--hCCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLE--LGPT   97 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~--~~~~   97 (133)
                      .+++|+|+|........+.+.|++.|....+......  ..+.+....+|.+|+--.  .+...+ .+.+.+++  ...+
T Consensus         4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~   81 (144)
T 3kht_A            4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQH   81 (144)
T ss_dssp             -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccC
Confidence            4578999987555566788889999988544433211  112233457998888321  122122 34555665  3467


Q ss_pred             CCEEEEec
Q 032797           98 VPLFGVCM  105 (133)
Q Consensus        98 ~PvLGICl  105 (133)
                      .|++-+.-
T Consensus        82 ~pii~~s~   89 (144)
T 3kht_A           82 TPIVILTD   89 (144)
T ss_dssp             CCEEEEET
T ss_pred             CCEEEEeC
Confidence            99998874

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=93.80  E-value=0.16  Score=33.60  Aligned_cols=81  Identities=11%  Similarity=0.123  Sum_probs=47.6

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVP   99 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~~~~P   99 (133)
                      ..++|+|+|....+...+.+.|+. .|+.+...-.+... ...+....+|.+|+--..  +. +...+.+.+++.....|
T Consensus         4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~~g~~~~~~l~~~~~~~~   81 (153)
T 3cz5_A            4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTL--PGPGGIEATRHIRQWDGAAR   81 (153)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCC--SSSCHHHHHHHHHHHCTTCC
T ss_pred             cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCCCHHHHHHHHHHhCCCCe
Confidence            457899998765566677888887 67776522221111 122333479988883321  22 22234556666556789


Q ss_pred             EEEEec
Q 032797          100 LFGVCM  105 (133)
Q Consensus       100 vLGICl  105 (133)
                      ++.+.-
T Consensus        82 ii~ls~   87 (153)
T 3cz5_A           82 ILIFTM   87 (153)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            988864

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}

Probab=93.76  E-value=0.2  Score=37.98  Aligned_cols=76  Identities=17%  Similarity=0.212  Sum_probs=47.5

Q ss_pred             CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCC-------C---CCHHHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND-------E---LTVEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (133)
Q Consensus        25 ~~i~vid~~~~-----~~~~i~~~l~~~G~~~~v~~~~-------~---~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~   89 (133)
                      +++++|-|...     ....+.++|++.|+++.+.+..       .   ...+... .++|.+|..||      ++.+.+
T Consensus         6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GG------DGT~l~   78 (292)
T 2an1_A            6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGG------DGNMLG   78 (292)
T ss_dssp             CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSC------HHHHHH
T ss_pred             cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcC------cHHHHH
Confidence            57888855321     2345778899999988765321       0   0112222 36899999999      444566


Q ss_pred             HHHHh-CCCCCEEEEechH
Q 032797           90 TVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        90 ~i~~~-~~~~PvLGIClG~  107 (133)
                      .++.+ ..++|+|||=.|.
T Consensus        79 a~~~~~~~~~P~lGI~~Gt   97 (292)
T 2an1_A           79 AARTLARYDINVIGINRGN   97 (292)
T ss_dssp             HHHHHTTSSCEEEEBCSSS
T ss_pred             HHHHhhcCCCCEEEEECCC
Confidence            66665 5679999996553

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=93.69  E-value=0.22  Score=31.96  Aligned_cols=81  Identities=15%  Similarity=0.076  Sum_probs=48.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~-v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      ++|+++|........+.+.|++.|+.+. ...........+....+|.+|+--.  -|...+ ...+.+++...+.|++-
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~ii~   79 (134)
T 3f6c_A            2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVD--IPGVNGIQVLETLRKRQYSGIIII   79 (134)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETT--CSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecC--CCCCChHHHHHHHHhcCCCCeEEE
Confidence            6899998755566678888998997665 3332211123333347998888322  122222 34556666556789888


Q ss_pred             EechH
Q 032797          103 VCMGL  107 (133)
Q Consensus       103 IClG~  107 (133)
                      +.--.
T Consensus        80 ~s~~~   84 (134)
T 3f6c_A           80 VSAKN   84 (134)
T ss_dssp             EECC-
T ss_pred             EeCCC
Confidence            77533

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=93.67  E-value=0.12  Score=33.48  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=47.5

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHh-CCCe-EEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHH--hCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGP   96 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~-~G~~-~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~--~~~   96 (133)
                      ..+++|+|+|........+.+.|+. .|++ +..........+.+....+|.+|+--..  +... -...+.+++  ...
T Consensus         6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~   83 (143)
T 3cnb_A            6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VGMDGFSICHRIKSTPATA   83 (143)
T ss_dssp             ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TTSCHHHHHHHHHTSTTTT
T ss_pred             cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CCCcHHHHHHHHHhCcccc
Confidence            4467899998765566678888988 8998 5544321111122333479988884321  2222 234555665  346


Q ss_pred             CCCEEEEec
Q 032797           97 TVPLFGVCM  105 (133)
Q Consensus        97 ~~PvLGICl  105 (133)
                      ..|++.+.-
T Consensus        84 ~~~ii~~s~   92 (143)
T 3cnb_A           84 NIIVIAMTG   92 (143)
T ss_dssp             TSEEEEEES
T ss_pred             CCcEEEEeC
Confidence            789998864

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=93.55  E-value=0.15  Score=34.21  Aligned_cols=82  Identities=15%  Similarity=0.159  Sum_probs=48.8

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHccC--CCCEEEECCCCCCcCCc-hHHHHHHHHhCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRK--NPRGVLISPGPGAPQDS-GISLQTVLELGPT   97 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~-v~~~~~~~~~~l~~~--~~DgvIl~GG~~~~~d~-~~~~~~i~~~~~~   97 (133)
                      .+.++|+|+|........+.+.|++.|+++. .........+.+...  .+|.||+--.  -+... -.+.+.+++....
T Consensus        34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~--l~~~~g~~~~~~lr~~~~~  111 (157)
T 3hzh_A           34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXIT--MPKMDGITCLSNIMEFDKN  111 (157)
T ss_dssp             TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSS--CSSSCHHHHHHHHHHHCTT
T ss_pred             CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEecc--CCCccHHHHHHHHHhhCCC
Confidence            3446899998755556678888988998875 332210011222233  6898888322  12222 2345666665667


Q ss_pred             CCEEEEec
Q 032797           98 VPLFGVCM  105 (133)
Q Consensus        98 ~PvLGICl  105 (133)
                      .|++-+.-
T Consensus       112 ~~ii~ls~  119 (157)
T 3hzh_A          112 ARVIMISA  119 (157)
T ss_dssp             CCEEEEES
T ss_pred             CcEEEEec
Confidence            99988874

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=93.51  E-value=0.094  Score=34.00  Aligned_cols=82  Identities=10%  Similarity=0.027  Sum_probs=48.2

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv  100 (133)
                      ...++|+|+|........+.+.|++.++.+..........+.+....+|.+|+--.  -+...+ .+.+.+++.....|+
T Consensus         5 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~i   82 (137)
T 3hdg_A            5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIR--MPKLGGLEMLDRIKAGGAKPYV   82 (137)
T ss_dssp             --CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHTTCCCEE
T ss_pred             ccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCcE
Confidence            34579999997655666788888888877765543111112233347998888432  122222 345556665567888


Q ss_pred             EEEec
Q 032797          101 FGVCM  105 (133)
Q Consensus       101 LGICl  105 (133)
                      +-+.-
T Consensus        83 i~~s~   87 (137)
T 3hdg_A           83 IVISA   87 (137)
T ss_dssp             EECCC
T ss_pred             EEEec
Confidence            87764

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=93.50  E-value=0.13  Score=33.32  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=47.7

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEE-EeCCCCCHHHHccCCCCEEEECCCCCCc-C-CchHHHHHHHHhCCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAP-Q-DSGISLQTVLELGPTV   98 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v-~~~~~~~~~~l~~~~~DgvIl~GG~~~~-~-d~~~~~~~i~~~~~~~   98 (133)
                      ...++|+|+|........+.+.|++.|+++.. ..........+....+|.+|+--.  .+ . +.-...+.+++. ...
T Consensus         7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~--~~~~~~g~~~~~~l~~~-~~~   83 (140)
T 3cg0_A            7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIM--LCGALDGVETAARLAAG-CNL   83 (140)
T ss_dssp             -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CCSSSCHHHHHHHHHHH-SCC
T ss_pred             CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecC--CCCCCCHHHHHHHHHhC-CCC
Confidence            45678999987555566788888888988763 332101112222346998888322  11 1 222344555555 679


Q ss_pred             CEEEEec
Q 032797           99 PLFGVCM  105 (133)
Q Consensus        99 PvLGICl  105 (133)
                      |++-+.-
T Consensus        84 ~ii~ls~   90 (140)
T 3cg0_A           84 PIIFITS   90 (140)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEec
Confidence            9998864

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=93.36  E-value=0.18  Score=33.31  Aligned_cols=83  Identities=11%  Similarity=0.108  Sum_probs=46.8

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTV   98 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~   98 (133)
                      ...++|+|+|....+...+.+.|+..+....+......  ..+.+....+|.+|+--.  -+...+ .+.+.+++...+.
T Consensus        18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~   95 (150)
T 4e7p_A           18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVE--MPVKTGLEVLEWIRSEKLET   95 (150)
T ss_dssp             --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSS--CSSSCHHHHHHHHHHTTCSC
T ss_pred             CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCC
Confidence            44578999987555566778888887743333332211  112233457998888322  122222 3455566655678


Q ss_pred             CEEEEech
Q 032797           99 PLFGVCMG  106 (133)
Q Consensus        99 PvLGIClG  106 (133)
                      |++-+.-.
T Consensus        96 ~ii~ls~~  103 (150)
T 4e7p_A           96 KVVVVTTF  103 (150)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEeCC
Confidence            99888753

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=93.28  E-value=0.087  Score=33.29  Aligned_cols=78  Identities=13%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCc-CCc-hHHHHHHHHh--CCCCC
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDS-GISLQTVLEL--GPTVP   99 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~-~d~-~~~~~~i~~~--~~~~P   99 (133)
                      .++|+|+|........+.+.|+..|+++............+....+|.+|+--.  .+ ... ....+.+++.  ....|
T Consensus         5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~--~~~~~~g~~~~~~l~~~~~~~~~~   82 (127)
T 2gkg_A            5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVD--LSAGQNGYLICGKLKKDDDLKNVP   82 (127)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESB--CGGGCBHHHHHHHHHHSTTTTTSC
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCC--CCCCCCHHHHHHHHhcCccccCCC
Confidence            368999987655666788888888998765432111112222346998887321  11 112 2345566664  46799


Q ss_pred             EEEE
Q 032797          100 LFGV  103 (133)
Q Consensus       100 vLGI  103 (133)
                      ++.+
T Consensus        83 ii~~   86 (127)
T 2gkg_A           83 IVII   86 (127)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9888

>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1

Probab=93.28  E-value=0.29  Score=31.32  Aligned_cols=81  Identities=11%  Similarity=0.188  Sum_probs=48.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHcc-------CCCCEEEECCCCCCcCCch-HHHHHHHH
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-------KNPRGVLISPGPGAPQDSG-ISLQTVLE   93 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~-------~~~DgvIl~GG~~~~~d~~-~~~~~i~~   93 (133)
                      +++|+|+|........+.+.|+..|+  .+..........+.+..       ..+|.+|+--..  +...+ ...+.+++
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~~~~l~~   79 (140)
T 1k68_A            2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PKKDGREVLAEIKS   79 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SSSCHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--CcccHHHHHHHHHc
Confidence            57899998765566678888998888  55444321011122332       479988884321  22222 34555665


Q ss_pred             hC--CCCCEEEEech
Q 032797           94 LG--PTVPLFGVCMG  106 (133)
Q Consensus        94 ~~--~~~PvLGIClG  106 (133)
                      ..  ...|++.+.-.
T Consensus        80 ~~~~~~~pii~ls~~   94 (140)
T 1k68_A           80 DPTLKRIPVVVLSTS   94 (140)
T ss_dssp             STTGGGSCEEEEESC
T ss_pred             CcccccccEEEEecC
Confidence            43  57899988743

>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A

Probab=93.15  E-value=0.22  Score=35.92  Aligned_cols=62  Identities=15%  Similarity=0.127  Sum_probs=39.7

Q ss_pred             CCCCCeEEEEEC--------CCCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----c---cCCCCEEEECCCCC-CcC
Q 032797           21 KNNKNPIIVIDN--------YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RKNPRGVLISPGPG-APQ   82 (133)
Q Consensus        21 ~~~~~~i~vid~--------~~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l----~---~~~~DgvIl~GG~~-~~~   82 (133)
                      ....+||.||--        +|++...+.+.|++.|+++..+.  .|  +.+.+    .   ..++|.||.+||-+ .+.
T Consensus        27 ~~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~DlVIttGGts~g~~  104 (185)
T 3rfq_A           27 ELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEA--DEVDIRNALNTAVIGGVDLVVSVGGTGVTPR  104 (185)
T ss_dssp             --CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECS--CHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred             CCCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCCCCCCc
Confidence            356678888822        56677778999999999876432  23  22222    1   14799999999976 344


Q ss_pred             Cc
Q 032797           83 DS   84 (133)
Q Consensus        83 d~   84 (133)
                      |.
T Consensus       105 D~  106 (185)
T 3rfq_A          105 DV  106 (185)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A

Probab=93.02  E-value=0.22  Score=38.29  Aligned_cols=76  Identities=16%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCCC-----------------HH-----HHccCCCCEEEECCC
Q 032797           25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDELT-----------------VE-----ELKRKNPRGVLISPG   77 (133)
Q Consensus        25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~~-----------------~~-----~l~~~~~DgvIl~GG   77 (133)
                      ++|++|-|..+-     ...+.++|++.|+++.+.......                 ..     +....++|.+|..||
T Consensus         5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GG   84 (307)
T 1u0t_A            5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG   84 (307)
T ss_dssp             CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeC
Confidence            578888664332     234778889999988765332110                 11     011236899998898


Q ss_pred             CCCcCCchHHHHHHHHh-CCCCCEEEEech
Q 032797           78 PGAPQDSGISLQTVLEL-GPTVPLFGVCMG  106 (133)
Q Consensus        78 ~~~~~d~~~~~~~i~~~-~~~~PvLGIClG  106 (133)
                      -      +.+....+.+ ..++|++||=.|
T Consensus        85 D------GT~l~a~~~~~~~~~pvlgi~~G  108 (307)
T 1u0t_A           85 D------GTFLRAAELARNASIPVLGVNLG  108 (307)
T ss_dssp             H------HHHHHHHHHHHHHTCCEEEEECS
T ss_pred             C------HHHHHHHHHhccCCCCEEEEeCC
Confidence            4      4445555553 346899999776

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=93.00  E-value=0.059  Score=34.70  Aligned_cols=54  Identities=13%  Similarity=0.155  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl   74 (133)
                      ...+++|+|+|........+.+.|++.|+.+..........+.+....+|.+|+
T Consensus         3 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~   56 (132)
T 3lte_A            3 LKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTL   56 (132)
T ss_dssp             ----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred             CCCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence            345679999987655666788889889997765532111112233457998887

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=92.98  E-value=0.059  Score=35.18  Aligned_cols=78  Identities=19%  Similarity=0.324  Sum_probs=45.9

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----ccCCCCEEEECCCCCCcC--Cch-HHHHHHHHh
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ--DSG-ISLQTVLEL   94 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~~~~DgvIl~GG~~~~~--d~~-~~~~~i~~~   94 (133)
                      ...++|+|+|........+.+.|+..|+++.....    .++.    ....+|.+|+-=.  -|.  ..+ .+.+.+++.
T Consensus         4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~   77 (136)
T 3kto_A            4 NHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFAS----AESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLVKR   77 (136)
T ss_dssp             ---CEEEEECSCHHHHHHHHHHHTTSSSEEEEESS----HHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHHHT
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCC----HHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHHhC
Confidence            34579999987555566788888888987765432    2222    2246888887221  122  122 234555554


Q ss_pred             CCCCCEEEEec
Q 032797           95 GPTVPLFGVCM  105 (133)
Q Consensus        95 ~~~~PvLGICl  105 (133)
                      ..+.|++-+.-
T Consensus        78 ~~~~~ii~~s~   88 (136)
T 3kto_A           78 GFHLPTIVMAS   88 (136)
T ss_dssp             TCCCCEEEEES
T ss_pred             CCCCCEEEEEc
Confidence            56789988764

>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0

Probab=92.75  E-value=0.18  Score=32.55  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=47.6

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCC-CCEEEECCCCCCcCCch-HHHHHHHHh-CCCCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSG-ISLQTVLEL-GPTVP   99 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~-~DgvIl~GG~~~~~d~~-~~~~~i~~~-~~~~P   99 (133)
                      ..++|+|+|........+.+.|++.|+++............+.... +|.+|+--.  -+...+ .+.+.+++. ....|
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~   83 (136)
T 3hdv_A            6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLR--MQPESGLDLIRTIRASERAALS   83 (136)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSC--CSSSCHHHHHHHHHTSTTTTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEecc--CCCCCHHHHHHHHHhcCCCCCC
Confidence            4578999997655666788889989988766432110111222234 898887322  122222 344555554 36788


Q ss_pred             EEEEech
Q 032797          100 LFGVCMG  106 (133)
Q Consensus       100 vLGIClG  106 (133)
                      ++-+.--
T Consensus        84 ii~~s~~   90 (136)
T 3hdv_A           84 IIVVSGD   90 (136)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            8887743

>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1

Probab=92.68  E-value=0.19  Score=32.55  Aligned_cols=81  Identities=11%  Similarity=0.020  Sum_probs=46.1

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP   99 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~P   99 (133)
                      ...++|+++|........+.+.|+..|+.+............+.. ..+|.+|+--.  -+...+ ...+.+++.....|
T Consensus        13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~~~~~~~   90 (138)
T 2b4a_A           13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQTKQPS   90 (138)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSSSCCE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCC
Confidence            556789999976556667888888889876544321001122333 47998887321  111122 23344444345788


Q ss_pred             EEEEe
Q 032797          100 LFGVC  104 (133)
Q Consensus       100 vLGIC  104 (133)
                      ++-+.
T Consensus        91 ii~ls   95 (138)
T 2b4a_A           91 VLILT   95 (138)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88876

>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1

Probab=92.50  E-value=0.33  Score=31.16  Aligned_cols=80  Identities=15%  Similarity=0.236  Sum_probs=46.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      +.+|+|+|........+...|...|+.+............+....+|.+++--.  -|...+ ...+.+++.....|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~   80 (136)
T 1mvo_A            3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPILM   80 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCCCCCCEEE
Confidence            468999987555556677888888987654432100112222336898887321  122222 34455665445689988


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        81 ~s~   83 (136)
T 1mvo_A           81 LTA   83 (136)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            764

>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A

Probab=92.41  E-value=0.39  Score=35.23  Aligned_cols=94  Identities=23%  Similarity=0.255  Sum_probs=55.1

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCE
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL  100 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~~~~Pv  100 (133)
                      ..+++|+|+|........+.+.|++.|+++..........+.+....+|.+++-=.  .|. +.-...+.|++.....|+
T Consensus       127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~--mp~~~G~~l~~~ir~~~~~~pi  204 (254)
T 2ayx_A          127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQLGLTLPV  204 (254)
T ss_dssp             CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHHHHCCSCE
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHhcCCCCcE
Confidence            45678999997555556678888889998765543211122233347998886211  122 222345666665457999


Q ss_pred             EEEech----HHHHHHHhCCe
Q 032797          101 FGVCMG----LQCIGEAFGDC  117 (133)
Q Consensus       101 LGIClG----~QlLa~a~GG~  117 (133)
                      +.+.--    ...-+...|..
T Consensus       205 I~lt~~~~~~~~~~~~~~G~~  225 (254)
T 2ayx_A          205 IGVTANALAEEKQRCLESGMD  225 (254)
T ss_dssp             EEEESSTTSHHHHHHHHCCCE
T ss_pred             EEEECCCCHHHHHHHHHcCCc
Confidence            988642    23334455653

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=92.40  E-value=0.3  Score=35.44  Aligned_cols=85  Identities=14%  Similarity=0.223  Sum_probs=49.8

Q ss_pred             ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCC
Q 032797           19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPT   97 (133)
Q Consensus        19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~   97 (133)
                      ....+.++|+|+|........+...|+..|+++..........+.+....+|.+|+-=.  -|...+ .+.+.+++...+
T Consensus        18 ~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~   95 (250)
T 3r0j_A           18 ENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGMDGFGVLRRLRADGID   95 (250)
T ss_dssp             --CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHTTCC
T ss_pred             CCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCC
Confidence            33445689999987555566778888888988764432100112222347998887221  222222 345556655557


Q ss_pred             CCEEEEec
Q 032797           98 VPLFGVCM  105 (133)
Q Consensus        98 ~PvLGICl  105 (133)
                      .|++-+.-
T Consensus        96 ~~ii~lt~  103 (250)
T 3r0j_A           96 APALFLTA  103 (250)
T ss_dssp             CCEEEEEC
T ss_pred             CCEEEEEC
Confidence            89988875

>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A

Probab=92.39  E-value=0.54  Score=29.37  Aligned_cols=79  Identities=11%  Similarity=0.196  Sum_probs=45.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      ++|+++|........+.+.|+..|+.+............+....+|.+++--.  .|...+ ...+.+++.....|++-+
T Consensus         1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~   78 (121)
T 2pl1_A            1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL   78 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred             CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            47899987555556677888888987664432111112233347898887322  222222 344555554457899887


Q ss_pred             ec
Q 032797          104 CM  105 (133)
Q Consensus       104 Cl  105 (133)
                      .-
T Consensus        79 s~   80 (121)
T 2pl1_A           79 TA   80 (121)
T ss_dssp             ES
T ss_pred             ec
Confidence            54

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=92.39  E-value=0.2  Score=32.54  Aligned_cols=81  Identities=11%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCc-CCc-hHHHHHHHH--hCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAP-QDS-GISLQTVLE--LGP   96 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~-~d~-~~~~~~i~~--~~~   96 (133)
                      ..++|+|+|........+...|++ .|+++..........+.+.. ..+|.+|+-=.  -| ... -.+.+.+++  ...
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~~~~~   80 (140)
T 3lua_A            3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRNNSRTA   80 (140)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHHSGGGT
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhCcccC
Confidence            457899998765556678888988 89987754321001112334 57998888221  11 111 124556666  456


Q ss_pred             CCCEEEEec
Q 032797           97 TVPLFGVCM  105 (133)
Q Consensus        97 ~~PvLGICl  105 (133)
                      +.|++-+.-
T Consensus        81 ~~~ii~ls~   89 (140)
T 3lua_A           81 NTPVIIATK   89 (140)
T ss_dssp             TCCEEEEES
T ss_pred             CCCEEEEeC
Confidence            899998874

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*

Probab=92.35  E-value=0.27  Score=37.09  Aligned_cols=64  Identities=17%  Similarity=0.308  Sum_probs=42.7

Q ss_pred             CeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-C--CC
Q 032797           25 NPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT   97 (133)
Q Consensus        25 ~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~--~~   97 (133)
                      |+++++-|.....    ..+.++|++.|+++.             ..++|.+|..||      ++.+....+.+ .  .+
T Consensus         1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~~~~D~vv~lGG------DGT~l~aa~~~~~~~~~   61 (272)
T 2i2c_A            1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------DVEPEIVISIGG------DGTFLSAFHQYEERLDE   61 (272)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------SSSCSEEEEEES------HHHHHHHHHHTGGGTTT
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------CCCCCEEEEEcC------cHHHHHHHHHHhhcCCC
Confidence            5788887743222    235566778888761             136899999998      44455666665 3  38


Q ss_pred             CCEEEEechH
Q 032797           98 VPLFGVCMGL  107 (133)
Q Consensus        98 ~PvLGIClG~  107 (133)
                      +|+|||=.|.
T Consensus        62 ~PilGIn~G~   71 (272)
T 2i2c_A           62 IAFIGIHTGH   71 (272)
T ss_dssp             CEEEEEESSS
T ss_pred             CCEEEEeCCC
Confidence            9999997764

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=92.29  E-value=0.28  Score=31.84  Aligned_cols=83  Identities=16%  Similarity=0.245  Sum_probs=47.8

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHcc----------CCCCEEEECCCCCCcCCch-HH
Q 032797           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR----------KNPRGVLISPGPGAPQDSG-IS   87 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~----------~~~DgvIl~GG~~~~~d~~-~~   87 (133)
                      ...+++|+|+|........+.+.|+..|+  .+..........+.+..          ..+|.+|+--.  .+...+ ..
T Consensus         3 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~   80 (149)
T 1k66_A            3 GNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLN--LPGTDGREV   80 (149)
T ss_dssp             SCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSC--CSSSCHHHH
T ss_pred             CCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECC--CCCCCHHHH
Confidence            34567899998765566678888998887  55544321111122332          47898888332  122222 23


Q ss_pred             HHHHHHhC--CCCCEEEEec
Q 032797           88 LQTVLELG--PTVPLFGVCM  105 (133)
Q Consensus        88 ~~~i~~~~--~~~PvLGICl  105 (133)
                      .+.+++..  ...|++.+.-
T Consensus        81 ~~~l~~~~~~~~~~ii~~t~  100 (149)
T 1k66_A           81 LQEIKQDEVLKKIPVVIMTT  100 (149)
T ss_dssp             HHHHTTSTTGGGSCEEEEES
T ss_pred             HHHHHhCcccCCCeEEEEeC
Confidence            34444432  5789998864

>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A

Probab=92.26  E-value=0.13  Score=33.84  Aligned_cols=85  Identities=14%  Similarity=0.127  Sum_probs=49.8

Q ss_pred             ccCCCCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHc-c-CCCCEEEECCCCCCcCCch-HHHHHHHHh
Q 032797           19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELK-R-KNPRGVLISPGPGAPQDSG-ISLQTVLEL   94 (133)
Q Consensus        19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~~~~l~-~-~~~DgvIl~GG~~~~~d~~-~~~~~i~~~   94 (133)
                      .....+.+|+|+|........+.+.|++.| +++............+. . ..+|.+|+--.  -+...+ .+.+.+++.
T Consensus        15 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~   92 (146)
T 4dad_A           15 LYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSRL   92 (146)
T ss_dssp             CCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHHH
T ss_pred             CCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHHh
Confidence            334555799999876556667888898888 87776543210111122 2 57998888321  111111 234555555


Q ss_pred             CCCCCEEEEec
Q 032797           95 GPTVPLFGVCM  105 (133)
Q Consensus        95 ~~~~PvLGICl  105 (133)
                      ....|++-+.-
T Consensus        93 ~~~~~ii~lt~  103 (146)
T 4dad_A           93 HPGLTCLLVTT  103 (146)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCCcEEEEeC
Confidence            56789888764

>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*

Probab=92.16  E-value=0.6  Score=28.97  Aligned_cols=79  Identities=18%  Similarity=0.187  Sum_probs=46.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      ++|+++|........+.+.|+..|+.+..........+.+....+|.+++-=.  -|...+ ...+.+++.....|++-+
T Consensus         2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~   79 (116)
T 3a10_A            2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKKDAKIILL   79 (116)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred             cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCCCCeEEEE
Confidence            47999987555566678888888987764432111112233347898887321  122222 345566665567888877


Q ss_pred             ec
Q 032797          104 CM  105 (133)
Q Consensus       104 Cl  105 (133)
                      .-
T Consensus        80 s~   81 (116)
T 3a10_A           80 TA   81 (116)
T ss_dssp             ES
T ss_pred             EC
Confidence            53

>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*

Probab=91.99  E-value=0.69  Score=29.29  Aligned_cols=80  Identities=13%  Similarity=0.148  Sum_probs=46.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      +.+|+++|........+...|+..|+.+............+....+|.+++-=.  -|...+ ...+.+++.....|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ii~   80 (126)
T 1dbw_A            3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDMSGVELLRNLGDLKINIPSIV   80 (126)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence            468999997655566677888888987764432100112223346887776211  122222 34455665556789988


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        81 ~s~   83 (126)
T 1dbw_A           81 ITG   83 (126)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            754

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*

Probab=91.97  E-value=0.42  Score=33.65  Aligned_cols=80  Identities=13%  Similarity=0.161  Sum_probs=47.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      .++|+|+|........+.+.|+..|+++..........+.+....+|.+|+--.  -|...+ ...+.+++...+.|++-
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~lr~~~~~~~ii~   79 (225)
T 1kgs_A            2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLM   79 (225)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence            468999987555566678888888988764432100112223347998887322  122222 34455665556789998


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        80 ls~   82 (225)
T 1kgs_A           80 LTA   82 (225)
T ss_dssp             EES
T ss_pred             EeC
Confidence            864

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=91.83  E-value=0.52  Score=30.05  Aligned_cols=80  Identities=9%  Similarity=0.049  Sum_probs=45.6

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVP   99 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~P   99 (133)
                      ..++|+|+|........+...|+ .|+++..........+.+....+|.+|+--.  -+...+ .+.+.+++.  ..+.|
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~~p   79 (133)
T 3nhm_A            3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVN--MDGMDGYALCGHFRSEPTLKHIP   79 (133)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHSTTTTTCC
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhCCccCCCC
Confidence            35789999875555556667777 7887765432111122233457998888322  122222 345556654  35789


Q ss_pred             EEEEec
Q 032797          100 LFGVCM  105 (133)
Q Consensus       100 vLGICl  105 (133)
                      ++-+.-
T Consensus        80 ii~~s~   85 (133)
T 3nhm_A           80 VIFVSG   85 (133)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            988764

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=91.81  E-value=0.65  Score=29.51  Aligned_cols=92  Identities=14%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv  100 (133)
                      ..+|+|+|........+...|+..|+++..........+.+....+|.+++-=.  -|...+ ...+.+++.  ..+.|+
T Consensus         2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~~g~~~~~~l~~~~~~~~~pi   79 (122)
T 3gl9_A            2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVMDGFTVLKKLQEKEEWKRIPV   79 (122)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCCcHHHHHHHHHhcccccCCCE
Confidence            358999986545555677888889988765432111122233457998888321  232233 334555543  257899


Q ss_pred             EEEec----hHHHHHHHhCCe
Q 032797          101 FGVCM----GLQCIGEAFGDC  117 (133)
Q Consensus       101 LGICl----G~QlLa~a~GG~  117 (133)
                      +-+.-    ....-+...|..
T Consensus        80 i~~s~~~~~~~~~~~~~~Ga~  100 (122)
T 3gl9_A           80 IVLTAKGGEEDESLALSLGAR  100 (122)
T ss_dssp             EEEESCCSHHHHHHHHHTTCS
T ss_pred             EEEecCCchHHHHHHHhcChh
Confidence            98873    222334455654

>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A

Probab=91.75  E-value=0.66  Score=29.32  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=45.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      +.+|+|+|........+...|+..|+++..........+.+....+|.+++-=.  -|...+ ...+.+++ ..+.|++-
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~~g~~~~~~lr~-~~~~~ii~   78 (120)
T 3f6p_A            2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNKDGVEVCREVRK-KYDMPIIM   78 (120)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTTHHHHHHHHHHT-TCCSCEEE
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEE
Confidence            358999987555556677888889988765432100112233457998887221  122222 23344444 34689887


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        79 ~t~   81 (120)
T 3f6p_A           79 LTA   81 (120)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            764

>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=91.72  E-value=0.039  Score=39.05  Aligned_cols=80  Identities=15%  Similarity=0.111  Sum_probs=49.6

Q ss_pred             CCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCCC-------------HHHHccCCCCEEEECCCCCCcC---Cc
Q 032797           24 KNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELT-------------VEELKRKNPRGVLISPGPGAPQ---DS   84 (133)
Q Consensus        24 ~~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~~~-------------~~~l~~~~~DgvIl~GG~~~~~---d~   84 (133)
                      ..+|+.+..-+-.+   ..+...+|.  -+...+|..+..             ..+..+.++|.+||.||-..|.   +.
T Consensus        26 ~~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~d~e~a~~l~~~~~G~~~~~~~~~~~D~vVllGGLAMPk~~v~~  103 (157)
T 2r47_A           26 AERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDI  103 (157)
T ss_dssp             CSEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETTCGGGCEEEEEETTEEEEEEECCCCEEEEEEEGGGGSTTTSCCH
T ss_pred             CCeEEEECCCeeecCHHhhheeeeeC--CceEEcCCCChhHceEEEEecCceEeccccCCCCCEEEEeccccCCCCCCCH
Confidence            56888887654333   234445555  466666653211             0111114789999999966665   44


Q ss_pred             hHHHHHHHHh-CCCCCEEEEec
Q 032797           85 GISLQTVLEL-GPTVPLFGVCM  105 (133)
Q Consensus        85 ~~~~~~i~~~-~~~~PvLGICl  105 (133)
                      +...++|..+ +....+.|||+
T Consensus       104 e~v~~li~ki~~~~~kiiGvCF  125 (157)
T 2r47_A          104 EDVKKLVEDALEEGGELMGLCY  125 (157)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCCEEEEEh
Confidence            5567788876 45567999997

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=91.67  E-value=0.36  Score=30.50  Aligned_cols=80  Identities=15%  Similarity=0.235  Sum_probs=46.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      +.+|+|+|....+...+.+.|+..|+++..........+.+....+|.+++-=.  -|...+ ...+.+++.....|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~   80 (124)
T 1srr_A            3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDENIRVII   80 (124)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCTTCEEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCCEEE
Confidence            358999987555566677888888987654322100112222346898887221  122222 34455665556789888


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        81 ~s~   83 (124)
T 1srr_A           81 MTA   83 (124)
T ss_dssp             EES
T ss_pred             EEc
Confidence            764

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=91.60  E-value=0.47  Score=30.52  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=46.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      .++|+|+|........+...|+..|+.+..........+.+....+|.+|+--.  -|...+ ...+.+++.....|++-
T Consensus         3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~   80 (132)
T 3crn_A            3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIK--LPDMEGTELLEKAHKLRPGMKKIM   80 (132)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSB--CSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCchHHHHHHHHhhCCCCcEEE
Confidence            468999987555566678888888987764432111112233347898887321  122222 34455665555788887


Q ss_pred             Ee
Q 032797          103 VC  104 (133)
Q Consensus       103 IC  104 (133)
                      +.
T Consensus        81 ~s   82 (132)
T 3crn_A           81 VT   82 (132)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A

Probab=91.57  E-value=1.6  Score=33.57  Aligned_cols=93  Identities=17%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             ccccCCCCCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHH----HHccCCCCEEEECCCCCCcCCc
Q 032797           17 DKKSKNNKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVE----ELKRKNPRGVLISPGPGAPQDS   84 (133)
Q Consensus        17 ~~~~~~~~~~i~vid~~~~~-------~~~i~~~l~~~G~~~~v~~~~~~-~~~----~l~~~~~DgvIl~GG~~~~~d~   84 (133)
                      |++.+.+.+++++|-|..+-       ...+.+.|++.|+++.+...... ...    +....++|.||+.||-|     
T Consensus        17 ~~~~~m~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG-----   91 (337)
T 2qv7_A           17 PRGSHMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG-----   91 (337)
T ss_dssp             --CCCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH-----
T ss_pred             ccccccccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch-----
Confidence            44444444568887664332       12466778889998887765322 111    12234789999999944     


Q ss_pred             hHHHHHHHHh---CCCCCEEEEechHH-HHHHHhC
Q 032797           85 GISLQTVLEL---GPTVPLFGVCMGLQ-CIGEAFG  115 (133)
Q Consensus        85 ~~~~~~i~~~---~~~~PvLGIClG~Q-lLa~a~G  115 (133)
                       .+.+.+..+   ..++|+.+|=.|-- .+|+.+|
T Consensus        92 -Tv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg  125 (337)
T 2qv7_A           92 -TLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALH  125 (337)
T ss_dssp             -HHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred             -HHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence             344444443   45788888866643 3455544

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=91.20  E-value=0.74  Score=34.84  Aligned_cols=77  Identities=12%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             CCeEEEEECC--CCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCC
Q 032797           24 KNPIIVIDNY--DSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV   98 (133)
Q Consensus        24 ~~~i~vid~~--~~~~~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~   98 (133)
                      +++||+|+..  ......+.++|++.|+++++++..+.  +.+++.  +||.||+.--..+... ....+.|+++ .++-
T Consensus         4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~yDvIIl~d~~~~~l~-~~~~~~L~~yV~~GG   80 (259)
T 3rht_A            4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--KQDLVILSDYPAERMT-AQAIDQLVTMVKAGC   80 (259)
T ss_dssp             --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--TCSEEEEESCCGGGBC-HHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--cCCEEEEcCCccccCC-HHHHHHHHHHHHhCC
Confidence            4689999631  12345688899999999999876543  345564  8999999632211112 2234555553 3344


Q ss_pred             CEEEE
Q 032797           99 PLFGV  103 (133)
Q Consensus        99 PvLGI  103 (133)
                      =++.+
T Consensus        81 gLi~~   85 (259)
T 3rht_A           81 GLVML   85 (259)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            45554

>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}

Probab=91.14  E-value=0.2  Score=32.51  Aligned_cols=82  Identities=12%  Similarity=0.237  Sum_probs=46.4

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHcc------CCCCEEEECCCCCCcCCch-HHHHHHHH
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSG-ISLQTVLE   93 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~------~~~DgvIl~GG~~~~~d~~-~~~~~i~~   93 (133)
                      .+++|+|+|........+.+.|++.|.  .+..........+.+..      ..+|.+|+--.  -+...+ ...+.+++
T Consensus         6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~--l~~~~g~~~~~~l~~   83 (143)
T 2qvg_A            6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN--IPKMNGIEFLKELRD   83 (143)
T ss_dssp             -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT--CTTSCHHHHHHHHTT
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecC--CCCCCHHHHHHHHHc
Confidence            457899998765566678888888887  55554321111122322      46898888322  122222 23344444


Q ss_pred             hC--CCCCEEEEech
Q 032797           94 LG--PTVPLFGVCMG  106 (133)
Q Consensus        94 ~~--~~~PvLGIClG  106 (133)
                      ..  ...|++.+.-.
T Consensus        84 ~~~~~~~~ii~ls~~   98 (143)
T 2qvg_A           84 DSSFTDIEVFVLTAA   98 (143)
T ss_dssp             SGGGTTCEEEEEESC
T ss_pred             CccccCCcEEEEeCC
Confidence            32  57899888643

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=91.05  E-value=0.56  Score=33.44  Aligned_cols=53  Identities=19%  Similarity=0.177  Sum_probs=34.2

Q ss_pred             CeEEEEEC---------CCCchHHHHHHHHhCCCeEEEEe--CCCCCHHHHc----c--CCCCEEEECCCCC
Q 032797           25 NPIIVIDN---------YDSFTYNLCQYMGELGYHFEVYR--NDELTVEELK----R--KNPRGVLISPGPG   79 (133)
Q Consensus        25 ~~i~vid~---------~~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l~----~--~~~DgvIl~GG~~   79 (133)
                      +++.||--         .|++...+.+.|++.|+++..+.  .|  +.+.+.    .  .++|.||.+||-+
T Consensus         4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~DlVittGG~g   73 (172)
T 3kbq_A            4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALEVSDLVVSSGGLG   73 (172)
T ss_dssp             CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred             CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCEEEEcCCCc
Confidence            67777732         34555668899999999876432  23  222221    1  2599999999976

>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1

Probab=90.67  E-value=0.51  Score=33.07  Aligned_cols=59  Identities=10%  Similarity=0.163  Sum_probs=33.9

Q ss_pred             CCeEEEEE---------CCCCchHHHHHH----HHhCCCeEEEEe--CCCCCHHHH----c---cCCCCEEEECCCCC-C
Q 032797           24 KNPIIVID---------NYDSFTYNLCQY----MGELGYHFEVYR--NDELTVEEL----K---RKNPRGVLISPGPG-A   80 (133)
Q Consensus        24 ~~~i~vid---------~~~~~~~~i~~~----l~~~G~~~~v~~--~~~~~~~~l----~---~~~~DgvIl~GG~~-~   80 (133)
                      .+|+.||-         -+|++...+.+.    |++.|+++..+.  .|  +.+.+    .   ..++|.||.+||-+ +
T Consensus         5 ~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~~DlVittGG~g~~   82 (167)
T 2g2c_A            5 HIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPE--GYDTVVEAIATALKQGARFIITAGGTGIR   82 (167)
T ss_dssp             EEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECS--SHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred             ccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence            35777772         245666778889    999998765332  23  22222    1   12599999999976 3


Q ss_pred             cCCc
Q 032797           81 PQDS   84 (133)
Q Consensus        81 ~~d~   84 (133)
                      +.|.
T Consensus        83 ~~D~   86 (167)
T 2g2c_A           83 AKNQ   86 (167)
T ss_dssp             TTCC
T ss_pred             CCcC
Confidence            4443

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=90.65  E-value=0.41  Score=33.01  Aligned_cols=81  Identities=15%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~~~~~PvL  101 (133)
                      .+++|+|+|........+...|+..|+.+..........+.+....+|.+|+-=.  -|... -.+.+.+++.....|++
T Consensus         6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii   83 (184)
T 3rqi_A            6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGNDSGLSLIAPLCDLQPDARIL   83 (184)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTEESHHHHHHHHHHCTTCEEE
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCccHHHHHHHHHhcCCCCCEE
Confidence            4578999987555566678888889987754432111122233457998887211  12212 23455666655678988


Q ss_pred             EEec
Q 032797          102 GVCM  105 (133)
Q Consensus       102 GICl  105 (133)
                      -+.-
T Consensus        84 ~lt~   87 (184)
T 3rqi_A           84 VLTG   87 (184)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            7763

>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}

Probab=90.52  E-value=0.35  Score=31.88  Aligned_cols=82  Identities=7%  Similarity=-0.003  Sum_probs=43.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhC-CCe-EEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGEL-GYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~-G~~-~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (133)
                      .++|+|+|........+.+.|++. |+. +............+.. ..+|.+|+--... ..+.-...+.+++.....|+
T Consensus         3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~i   81 (154)
T 2qsj_A            3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLP-DAEAIDGLVRLKRFDPSNAV   81 (154)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEE
T ss_pred             ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCC-CCchHHHHHHHHHhCCCCeE
Confidence            468999987555566788888876 773 3333221001122333 4799888833211 11222345556655557898


Q ss_pred             EEEech
Q 032797          101 FGVCMG  106 (133)
Q Consensus       101 LGIClG  106 (133)
                      +.++--
T Consensus        82 i~ls~~   87 (154)
T 2qsj_A           82 ALISGE   87 (154)
T ss_dssp             EEC---
T ss_pred             EEEeCC
Confidence            887643

>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A

Probab=90.48  E-value=0.72  Score=32.59  Aligned_cols=80  Identities=11%  Similarity=0.228  Sum_probs=47.0

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (133)
                      ..++|+|+|........+...|+..|+++..........+.+....+|.+|+--.  -|...+ ...+.+++...+.|++
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~ii   83 (233)
T 1ys7_A            6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVC   83 (233)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence            3478999987555566788888888987764332100112233347998887322  122222 3445566545678998


Q ss_pred             EEe
Q 032797          102 GVC  104 (133)
Q Consensus       102 GIC  104 (133)
                      -+.
T Consensus        84 ~lt   86 (233)
T 1ys7_A           84 VLS   86 (233)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=90.43  E-value=0.54  Score=29.39  Aligned_cols=80  Identities=15%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (133)
                      +++|+++|........+.+.|+..|+++...-.+... .+.+....+|.+++-=.  -|...+ ...+.+++.....|++
T Consensus         2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii   79 (120)
T 1tmy_A            2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKIDPNAKII   79 (120)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHHCTTCCEE
T ss_pred             CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHhhCCCCeEE
Confidence            4689999875555566778888889875322222111 12222336898887321  122222 3445565555678988


Q ss_pred             EEec
Q 032797          102 GVCM  105 (133)
Q Consensus       102 GICl  105 (133)
                      -+.-
T Consensus        80 ~~s~   83 (120)
T 1tmy_A           80 VCSA   83 (120)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8764

>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8

Probab=90.40  E-value=1.5  Score=30.71  Aligned_cols=78  Identities=14%  Similarity=0.032  Sum_probs=45.7

Q ss_pred             CeEEEEEC-CCCchHHHH----HHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC-chHHHHHHHHh---
Q 032797           25 NPIIVIDN-YDSFTYNLC----QYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL---   94 (133)
Q Consensus        25 ~~i~vid~-~~~~~~~i~----~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d-~~~~~~~i~~~---   94 (133)
                      ++|++|-. ..+++..+.    +.+++ .|.+++++...+.+.+++.  ++|+||+ |.|---.. ...+..++.++   
T Consensus         5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~--~aD~ii~-gsP~y~g~~~~~lk~fld~~~~~   81 (188)
T 2ark_A            5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLGD   81 (188)
T ss_dssp             EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGGG
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHH--hCCEEEE-EeCccCCcCCHHHHHHHHHHhhh
Confidence            57877742 334455444    44555 7888888887655566665  6999999 54432111 23344555543   


Q ss_pred             ----CCCCCEEEEec
Q 032797           95 ----GPTVPLFGVCM  105 (133)
Q Consensus        95 ----~~~~PvLGICl  105 (133)
                          -.++|+.-++-
T Consensus        82 ~~~~l~gk~~~~~~t   96 (188)
T 2ark_A           82 LWGEIDGKIACAFSS   96 (188)
T ss_dssp             TTTSCTTCEEEEEEE
T ss_pred             hHHHhCCCeEEEEEE
Confidence                15777765554

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=90.39  E-value=0.34  Score=31.94  Aligned_cols=88  Identities=15%  Similarity=0.089  Sum_probs=47.2

Q ss_pred             cccccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-C-HHHHccCCCCEEEECCCCCCcCCc-hHHHHHHH
Q 032797           16 DDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T-VEELKRKNPRGVLISPGPGAPQDS-GISLQTVL   92 (133)
Q Consensus        16 ~~~~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~-~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~   92 (133)
                      +.......+.+|+|+|........+.+.|++.|....+...... . .+.+....+|.+|+--..  +... -...+.++
T Consensus         7 ~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~   84 (152)
T 3eul_A            7 HMSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM--PGMDGAQVAAAVR   84 (152)
T ss_dssp             -------CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHH
T ss_pred             CCCCCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHH
Confidence            33445567789999997555566788888888855433222211 1 122233479988883221  1222 23455566


Q ss_pred             HhCCCCCEEEEec
Q 032797           93 ELGPTVPLFGVCM  105 (133)
Q Consensus        93 ~~~~~~PvLGICl  105 (133)
                      +.....|++-+.-
T Consensus        85 ~~~~~~~ii~~s~   97 (152)
T 3eul_A           85 SYELPTRVLLISA   97 (152)
T ss_dssp             HTTCSCEEEEEES
T ss_pred             hcCCCCeEEEEEc
Confidence            6556788887764

>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0

Probab=90.28  E-value=0.83  Score=29.56  Aligned_cols=80  Identities=15%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv  100 (133)
                      +.+|+|+|........+...|+..|+++..........+.+....+|.+++-=.  -|...+ .+.+.+++.  ...+|+
T Consensus         4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~lr~~~~~~~~pi   81 (136)
T 3t6k_A            4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGIDGYTLCKRVRQHPLTKTLPI   81 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHcCCCcCCccE
Confidence            468999987555556678888889987765432111112233357998887211  222233 345566653  457899


Q ss_pred             EEEec
Q 032797          101 FGVCM  105 (133)
Q Consensus       101 LGICl  105 (133)
                      +-+.-
T Consensus        82 i~~t~   86 (136)
T 3t6k_A           82 LMLTA   86 (136)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            88774

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=90.26  E-value=1.1  Score=31.50  Aligned_cols=56  Identities=18%  Similarity=0.126  Sum_probs=36.2

Q ss_pred             CCCCeEEEEECC--------------CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH--------ccCCCCEEEECCC
Q 032797           22 NNKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL--------KRKNPRGVLISPG   77 (133)
Q Consensus        22 ~~~~~i~vid~~--------------~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l--------~~~~~DgvIl~GG   77 (133)
                      ...+|+.||--.              |.....+.+.|++.|+++.-..  .|+  .+.+        ...++|.||.+||
T Consensus        13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG   90 (178)
T 3iwt_A           13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG   90 (178)
T ss_dssp             CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred             CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCC
Confidence            455788888322              4444568899999999875432  232  2221        1246899999999


Q ss_pred             CC
Q 032797           78 PG   79 (133)
Q Consensus        78 ~~   79 (133)
                      -+
T Consensus        91 ~g   92 (178)
T 3iwt_A           91 TG   92 (178)
T ss_dssp             CS
T ss_pred             cc
Confidence            76

>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A

Probab=90.21  E-value=0.35  Score=33.97  Aligned_cols=60  Identities=25%  Similarity=0.333  Sum_probs=37.2

Q ss_pred             CCeEEEEE---------CCCCchHHHHHHHHhCCCeEE---EEeCCCCCHH-HHc---cCCCCEEEECCCCC-CcCCc
Q 032797           24 KNPIIVID---------NYDSFTYNLCQYMGELGYHFE---VYRNDELTVE-ELK---RKNPRGVLISPGPG-APQDS   84 (133)
Q Consensus        24 ~~~i~vid---------~~~~~~~~i~~~l~~~G~~~~---v~~~~~~~~~-~l~---~~~~DgvIl~GG~~-~~~d~   84 (133)
                      .+|+.||-         -+|++...+.+.|++.|+++.   +++.+ .... .+.   ..++|.||.+||.+ .++|.
T Consensus         7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~   83 (164)
T 3pzy_A            7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDS   83 (164)
T ss_dssp             CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCC
T ss_pred             CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCcc
Confidence            46787773         246667778999999999874   34432 2111 121   13699999999976 34443

>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A

Probab=90.07  E-value=1.1  Score=32.06  Aligned_cols=79  Identities=18%  Similarity=0.232  Sum_probs=45.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      .++|+|+|........+...|+..|+++..........+.+....+|.+|+--.  -|...+ ...+.+++. .+.|++-
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~~~~~lr~~-~~~~ii~   81 (238)
T 2gwr_A            5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLM--LPGMNGIDVCRVLRAD-SGVPIVM   81 (238)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHTT-CCCCEEE
T ss_pred             cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence            468999987555566778888888998765433211122233347998887321  122222 233444443 3789988


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        82 lt~   84 (238)
T 2gwr_A           82 LTA   84 (238)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            753

>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.06  E-value=0.72  Score=29.92  Aligned_cols=79  Identities=13%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      .+|+|+|........+.+.|+..|+++..........+.+....+|.+|+-=.  -|...+ ...+.+++.....|++-+
T Consensus         5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~~~ii~l   82 (137)
T 3cfy_A            5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIPTSVIIA   82 (137)
T ss_dssp             CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred             ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            48999988666677788888888887654322100112222347898887321  122222 344556654456888877


Q ss_pred             ec
Q 032797          104 CM  105 (133)
Q Consensus       104 Cl  105 (133)
                      .-
T Consensus        83 s~   84 (137)
T 3cfy_A           83 TA   84 (137)
T ss_dssp             ES
T ss_pred             Ee
Confidence            53

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=90.00  E-value=0.65  Score=32.58  Aligned_cols=56  Identities=20%  Similarity=0.219  Sum_probs=35.1

Q ss_pred             CCCCeEEEEECC-------CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----c--cC--CCCEEEECCCCC
Q 032797           22 NNKNPIIVIDNY-------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RK--NPRGVLISPGPG   79 (133)
Q Consensus        22 ~~~~~i~vid~~-------~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l----~--~~--~~DgvIl~GG~~   79 (133)
                      ...+++.||--+       |++...+.+.|++.|+++....  .|  +.+.+    .  ..  ++|.||.+||-+
T Consensus        11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~g   83 (169)
T 1y5e_A           11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKD--DKESIQQAVLAGYHKEDVDVVLTNGGTG   83 (169)
T ss_dssp             -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECS--SHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred             ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            455788888433       3444568888999999875332  22  22222    1  12  799999999976

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=89.94  E-value=0.63  Score=31.39  Aligned_cols=94  Identities=17%  Similarity=0.208  Sum_probs=53.2

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT   97 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~   97 (133)
                      ..++||+|+|-.......+.+.|++.|+.......+... .+.+....||.|++ -= .-|.-.+ ++.+.||+.  ..+
T Consensus        10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~Dlill-D~-~MP~mdG~el~~~ir~~~~~~~   87 (134)
T 3to5_A           10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVT-DW-NMPGMQGIDLLKNIRADEELKH   87 (134)
T ss_dssp             CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEE-ES-CCSSSCHHHHHHHHHHSTTTTT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEE-cC-CCCCCCHHHHHHHHHhCCCCCC
Confidence            456799999854444556778899999864332222111 12223347998887 11 1233344 345677763  367


Q ss_pred             CCEEEEec----hHHHHHHHhCCe
Q 032797           98 VPLFGVCM----GLQCIGEAFGDC  117 (133)
Q Consensus        98 ~PvLGICl----G~QlLa~a~GG~  117 (133)
                      +||+-+--    ....-+...|..
T Consensus        88 ipvI~lTa~~~~~~~~~~~~~Ga~  111 (134)
T 3to5_A           88 LPVLMITAEAKREQIIEAAQAGVN  111 (134)
T ss_dssp             CCEEEEESSCCHHHHHHHHHTTCC
T ss_pred             CeEEEEECCCCHHHHHHHHHCCCC
Confidence            99988763    222234455664

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=89.86  E-value=0.68  Score=32.65  Aligned_cols=61  Identities=18%  Similarity=0.147  Sum_probs=37.6

Q ss_pred             CCCCCeEEEEECCC-------CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH-------ccC-CCCEEEECCCCC-CcC
Q 032797           21 KNNKNPIIVIDNYD-------SFTYNLCQYMGELGYHFEVYR--NDELTVEEL-------KRK-NPRGVLISPGPG-APQ   82 (133)
Q Consensus        21 ~~~~~~i~vid~~~-------~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l-------~~~-~~DgvIl~GG~~-~~~   82 (133)
                      +...+++.||--+|       ++...+.+.|++.|+++....  .|  +.+.+       ... ++|.||.+||-+ ++.
T Consensus         7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG~g~~~~   84 (172)
T 1mkz_A            7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGGTGLTEG   84 (172)
T ss_dssp             SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESCCSSSTT
T ss_pred             CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCC
Confidence            34567888884433       334558888999999875332  23  22222       112 499999999976 344


Q ss_pred             C
Q 032797           83 D   83 (133)
Q Consensus        83 d   83 (133)
                      |
T Consensus        85 D   85 (172)
T 1mkz_A           85 D   85 (172)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=89.74  E-value=0.72  Score=30.32  Aligned_cols=81  Identities=10%  Similarity=0.126  Sum_probs=45.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCC-CCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDS-GISLQTVLELGPTVPL  100 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~-~DgvIl~GG~~~~~d~-~~~~~~i~~~~~~~Pv  100 (133)
                      ++++|+|+|........+.+.|+. |+++..........+.+.... ||.+|+--.  -+... -.+.+.+++.....|+
T Consensus         3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~i   79 (151)
T 3kcn_A            3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMR--MPGMEGTEVIQKARLISPNSVY   79 (151)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESC--CSSSCHHHHHHHHHHHCSSCEE
T ss_pred             CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCC--CCCCcHHHHHHHHHhcCCCcEE
Confidence            457899998755555567777765 877765432111112232234 698887322  11222 2345566665567898


Q ss_pred             EEEech
Q 032797          101 FGVCMG  106 (133)
Q Consensus       101 LGIClG  106 (133)
                      +-+.-.
T Consensus        80 i~~s~~   85 (151)
T 3kcn_A           80 LMLTGN   85 (151)
T ss_dssp             EEEECG
T ss_pred             EEEECC
Confidence            887753

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A

Probab=89.64  E-value=0.8  Score=31.81  Aligned_cols=81  Identities=15%  Similarity=0.240  Sum_probs=46.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (133)
                      ...+|+|+|........+...|+..|+++..........+.+....+|.+|+-=.  -|...+ ...+.+++...+.|++
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii   80 (208)
T 1yio_A            3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPIV   80 (208)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence            3468999987555566778888888988764432100011122346888776211  122222 3455566555678998


Q ss_pred             EEec
Q 032797          102 GVCM  105 (133)
Q Consensus       102 GICl  105 (133)
                      -+.-
T Consensus        81 ~ls~   84 (208)
T 1yio_A           81 FITA   84 (208)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            8763

>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A

Probab=89.61  E-value=0.58  Score=32.66  Aligned_cols=50  Identities=18%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             CCCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----c---cC-CCCEEEECCCCC-CcCCc
Q 032797           33 YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RK-NPRGVLISPGPG-APQDS   84 (133)
Q Consensus        33 ~~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l----~---~~-~~DgvIl~GG~~-~~~d~   84 (133)
                      +|++...+.+.|++.|+++....  .|  +.+.+    .   .. ++|.||.+||-+ .+.|.
T Consensus        19 ~D~n~~~l~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~   79 (164)
T 2is8_A           19 QDTTHLAIREVLAGGPFEVAAYELVPD--EPPMIKKVLRLWADREGLDLILTNGGTGLAPRDR   79 (164)
T ss_dssp             CCCHHHHHHHHHTTSSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCC
T ss_pred             ccchHHHHHHHHHHCCCeEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCC
Confidence            45666778899999998765332  23  22222    1   12 699999999976 34443

>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1

Probab=89.54  E-value=0.75  Score=28.79  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=44.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      ..+|+++|........+.+.|+..|+.+............+....+|.+++-=.  -|...+ ...+.+++ ....|++-
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~-~~~~~ii~   78 (122)
T 1zgz_A            2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RSTVGIIL   78 (122)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCCCEEEE
T ss_pred             CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCCChHHHHHHHHh-cCCCCEEE
Confidence            358999987555566788888888987754432100011223347898887221  122222 23444554 45678877


Q ss_pred             Ee
Q 032797          103 VC  104 (133)
Q Consensus       103 IC  104 (133)
                      +.
T Consensus        79 ~s   80 (122)
T 1zgz_A           79 VT   80 (122)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=89.24  E-value=0.85  Score=29.92  Aligned_cols=82  Identities=15%  Similarity=0.137  Sum_probs=47.0

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHc---------cCCCCEEEECCCCCCcCCch-HHHHH
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELK---------RKNPRGVLISPGPGAPQDSG-ISLQT   90 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~---------~~~~DgvIl~GG~~~~~d~~-~~~~~   90 (133)
                      ++++|+|+|........+.+.|++.|.  .+..........+.+.         ...+|.+|+-=.  -|...+ .+.+.
T Consensus         3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~~~~~~   80 (152)
T 3heb_A            3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGIDILKL   80 (152)
T ss_dssp             --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHHHHHHH
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHHHHHHH
Confidence            357999998755556678888999998  4544332100112221         246898887321  122222 34566


Q ss_pred             HHH--hCCCCCEEEEech
Q 032797           91 VLE--LGPTVPLFGVCMG  106 (133)
Q Consensus        91 i~~--~~~~~PvLGIClG  106 (133)
                      +++  ...+.|++-+.-.
T Consensus        81 lr~~~~~~~~pii~~t~~   98 (152)
T 3heb_A           81 VKENPHTRRSPVVILTTT   98 (152)
T ss_dssp             HHHSTTTTTSCEEEEESC
T ss_pred             HHhcccccCCCEEEEecC
Confidence            666  3467899987743

>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9

Probab=89.23  E-value=0.53  Score=35.19  Aligned_cols=64  Identities=14%  Similarity=0.080  Sum_probs=41.2

Q ss_pred             HHHHHHHHhCCCeEEEEeCC----C--CCHHHHccCCCCEEEECCCCCCcCC-------c----hHHHHHHHHh-CCCCC
Q 032797           38 YNLCQYMGELGYHFEVYRND----E--LTVEELKRKNPRGVLISPGPGAPQD-------S----GISLQTVLEL-GPTVP   99 (133)
Q Consensus        38 ~~i~~~l~~~G~~~~v~~~~----~--~~~~~l~~~~~DgvIl~GG~~~~~d-------~----~~~~~~i~~~-~~~~P   99 (133)
                      ..+.++|+..++++++++..    .  .+.+++.  +||.||+.+-+.+...       .    ....+.|+++ .++..
T Consensus        43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~--~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGg  120 (256)
T 2gk3_A           43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG  120 (256)
T ss_dssp             HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHhcCceEEEEecccchhhCCcChhHHh--cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCE
Confidence            35888999999999887421    1  1234454  7999999775432111       0    2234677774 56889


Q ss_pred             EEEE
Q 032797          100 LFGV  103 (133)
Q Consensus       100 vLGI  103 (133)
                      +++|
T Consensus       121 ll~i  124 (256)
T 2gk3_A          121 LLMI  124 (256)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A

Probab=88.97  E-value=1.3  Score=27.67  Aligned_cols=79  Identities=14%  Similarity=0.128  Sum_probs=44.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      ..+|+++|........+...|+..|+++..........+.+....+|.+++--.  .|...+ ...+.+++. ...|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~-~~~~ii~   79 (123)
T 1xhf_A            3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGKNGLLLARELREQ-ANVALMF   79 (123)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCEEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence            458999987555556677888888887654332100112223347898887322  122222 234455544 5688887


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        80 ~s~   82 (123)
T 1xhf_A           80 LTG   82 (123)
T ss_dssp             EES
T ss_pred             EEC
Confidence            753

>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}

Probab=88.91  E-value=2.4  Score=28.97  Aligned_cols=78  Identities=10%  Similarity=0.133  Sum_probs=42.2

Q ss_pred             CeEEEEE-CCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCchHHHHHHHHh---
Q 032797           25 NPIIVID-NYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL---   94 (133)
Q Consensus        25 ~~i~vid-~~~~~~~~i~----~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~~~~~~i~~~---   94 (133)
                      |+|+|+- ...+.+..+.    +.+.+.|+++++++....+..++..  .++|+||+ |.|---..... ..++..+   
T Consensus         1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspty~g~~p~-~~fl~~l~~~   78 (161)
T 3hly_A            1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTPPSQPSEAV-ATALSTIFAA   78 (161)
T ss_dssp             -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECCBSSCCHHH-HHHHHHHHHH
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcCCcCCchhH-HHHHHHHHhh
Confidence            4666663 2334555544    4456679998888875445555421  26999998 55432122221 2333332   


Q ss_pred             -CCCCCEEEEe
Q 032797           95 -GPTVPLFGVC  104 (133)
Q Consensus        95 -~~~~PvLGIC  104 (133)
                       -.++|+.-++
T Consensus        79 ~l~gk~v~~fg   89 (161)
T 3hly_A           79 AHNKQAIGLFD   89 (161)
T ss_dssp             CCTTSEEEEEC
T ss_pred             hhCCCEEEEEE
Confidence             3567776654

>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}

Probab=88.69  E-value=0.79  Score=29.51  Aligned_cols=82  Identities=10%  Similarity=0.139  Sum_probs=46.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHcc-----CCCCEEEECCCCCCcCCch-HHHHHHHH-
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSG-ISLQTVLE-   93 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~-----~~~DgvIl~GG~~~~~d~~-~~~~~i~~-   93 (133)
                      ..++|+|+|........+...|+..|.  .+..........+.+..     ..+|.||+-=.  -|...+ .+.+.+++ 
T Consensus         8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~   85 (146)
T 3ilh_A            8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLFKQH   85 (146)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHHHHH
T ss_pred             ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHHHHHHh
Confidence            456899998755555667788888888  44433221001122333     57998888321  122222 34566666 


Q ss_pred             ---hCCCCCEEEEech
Q 032797           94 ---LGPTVPLFGVCMG  106 (133)
Q Consensus        94 ---~~~~~PvLGIClG  106 (133)
                         .....|++-+.-.
T Consensus        86 ~~~~~~~~~ii~~t~~  101 (146)
T 3ilh_A           86 FQPMKNKSIVCLLSSS  101 (146)
T ss_dssp             CGGGTTTCEEEEECSS
T ss_pred             hhhccCCCeEEEEeCC
Confidence               3467888877643

>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...

Probab=88.68  E-value=1.2  Score=27.96  Aligned_cols=81  Identities=17%  Similarity=0.260  Sum_probs=45.0

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV   98 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~   98 (133)
                      ..++|+++|........+.+.|+..|+ .+..........+.+....+|.+++-=.  -|...+ ...+.+++.  ....
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~l~~~l~~~~~~~~~   80 (128)
T 1jbe_A            3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNMDGLELLKTIRAXXAMSAL   80 (128)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSSCHHHHHHHHHC--CCTTC
T ss_pred             CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhcccCCC
Confidence            457899998755555667788888887 4444332101112233346898877221  222222 334555542  3568


Q ss_pred             CEEEEec
Q 032797           99 PLFGVCM  105 (133)
Q Consensus        99 PvLGICl  105 (133)
                      |++-+.-
T Consensus        81 ~ii~~s~   87 (128)
T 1jbe_A           81 PVLMVTA   87 (128)
T ss_dssp             CEEEEES
T ss_pred             cEEEEec
Confidence            9988764

>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A

Probab=88.53  E-value=1.2  Score=31.36  Aligned_cols=94  Identities=11%  Similarity=0.078  Sum_probs=53.6

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHcc-------------CCCCEEEECCCCCCcCCch-H
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKR-------------KNPRGVLISPGPGAPQDSG-I   86 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~-------------~~~DgvIl~GG~~~~~d~~-~   86 (133)
                      ..+++|+|+|........+.+.|+..|+ .+..........+.+..             ..+|.||+-=.  -|...+ .
T Consensus        59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~e  136 (206)
T 3mm4_A           59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYE  136 (206)
T ss_dssp             TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHH
Confidence            4557999998755556678888999998 56554321111111221             26998887211  122222 3


Q ss_pred             HHHHHHHh----CCCCCEEEEechH---HHH--HHHhCCe
Q 032797           87 SLQTVLEL----GPTVPLFGVCMGL---QCI--GEAFGDC  117 (133)
Q Consensus        87 ~~~~i~~~----~~~~PvLGIClG~---QlL--a~a~GG~  117 (133)
                      +.+.|++.    ...+|++-+.--.   +..  +...|..
T Consensus       137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~  176 (206)
T 3mm4_A          137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMD  176 (206)
T ss_dssp             HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCS
T ss_pred             HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCC
Confidence            45566653    3679999887532   333  3455654

>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A

Probab=88.21  E-value=1.2  Score=31.43  Aligned_cols=60  Identities=23%  Similarity=0.248  Sum_probs=35.4

Q ss_pred             CCCeEEEEEC---------CCCchHHHHHHHH---hCCCeEEEEe-CCCCCHHHH-------cc-CCCCEEEECCCCC-C
Q 032797           23 NKNPIIVIDN---------YDSFTYNLCQYMG---ELGYHFEVYR-NDELTVEEL-------KR-KNPRGVLISPGPG-A   80 (133)
Q Consensus        23 ~~~~i~vid~---------~~~~~~~i~~~l~---~~G~~~~v~~-~~~~~~~~l-------~~-~~~DgvIl~GG~~-~   80 (133)
                      ..+++.||--         +|++...+.+.|+   +.|+++.... .|  +.+.+       .. .++|.||.+||-+ +
T Consensus         4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~D--d~~~I~~~l~~~~~~~~~DlVittGG~g~g   81 (178)
T 2pbq_A            4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPD--ERDLIEKTLIELADEKGCSLILTTGGTGPA   81 (178)
T ss_dssp             -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred             CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence            4568887743         3444556788777   8899773211 22  22222       11 1699999999976 4


Q ss_pred             cCCc
Q 032797           81 PQDS   84 (133)
Q Consensus        81 ~~d~   84 (133)
                      +.|.
T Consensus        82 ~~D~   85 (178)
T 2pbq_A           82 PRDV   85 (178)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            4443

>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}

Probab=87.96  E-value=1.7  Score=27.91  Aligned_cols=80  Identities=18%  Similarity=0.180  Sum_probs=46.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv  100 (133)
                      .++|+|+|........+.+.|+..|+.+..........+.+....+|.+|+-=.  -|...+ .+.+.+++.  ...+|+
T Consensus         3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i   80 (138)
T 3c3m_A            3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIM--MEPMDGWETLERIKTDPATRDIPV   80 (138)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred             cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHcCcccCCCCE
Confidence            358999987555566678888888987664322100112233347898887221  122222 344556553  357899


Q ss_pred             EEEec
Q 032797          101 FGVCM  105 (133)
Q Consensus       101 LGICl  105 (133)
                      +-+.-
T Consensus        81 i~ls~   85 (138)
T 3c3m_A           81 LMLTA   85 (138)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            88763

>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}

Probab=87.92  E-value=0.16  Score=34.02  Aligned_cols=80  Identities=10%  Similarity=0.127  Sum_probs=45.7

Q ss_pred             cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCC
Q 032797           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPT   97 (133)
Q Consensus        20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~   97 (133)
                      +...++||+|+|-.......+.+.|++.|+++.-...+.. ..+.+....||.+++==  .-|...+ +..+.+++  .+
T Consensus         4 m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi--~mP~~~G~el~~~lr~--~~   79 (123)
T 2lpm_A            4 MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDV--NLDGEPSYPVADILAE--RN   79 (123)
T ss_dssp             CCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECS--SSSSCCSHHHHHHHHH--TC
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEec--CCCCCCHHHHHHHHHc--CC
Confidence            3455689999987666677788899999987531111100 11223345899888711  1122233 23445554  45


Q ss_pred             CCEEEE
Q 032797           98 VPLFGV  103 (133)
Q Consensus        98 ~PvLGI  103 (133)
                      +|++-+
T Consensus        80 ipvI~l   85 (123)
T 2lpm_A           80 VPFIFA   85 (123)
T ss_dssp             CSSCCB
T ss_pred             CCEEEE
Confidence            887643

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=87.88  E-value=4.1  Score=29.47  Aligned_cols=78  Identities=13%  Similarity=0.101  Sum_probs=41.7

Q ss_pred             CCCCCeEEEEEC--CCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHH
Q 032797           21 KNNKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGIS   87 (133)
Q Consensus        21 ~~~~~~i~vid~--~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~   87 (133)
                      .....+|.++-.  .+.|...    +.+.+++.|+++.+...+. +.+       .+...++||+|+.+..  +....  
T Consensus         5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~--~~~~~--   79 (293)
T 3l6u_A            5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQN-SRISEREQILEFVHLKVDAIFITTLD--DVYIG--   79 (293)
T ss_dssp             ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHHHHTTCSEEEEECSC--TTTTH--
T ss_pred             CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCC--hHHHH--
Confidence            344567777633  2233322    4556777899999887642 221       2223589999997642  12221  


Q ss_pred             HHHHHHh-CCCCCEEEEe
Q 032797           88 LQTVLEL-GPTVPLFGVC  104 (133)
Q Consensus        88 ~~~i~~~-~~~~PvLGIC  104 (133)
                       +.++.+ +.++|+.-+.
T Consensus        80 -~~~~~~~~~~iPvV~~~   96 (293)
T 3l6u_A           80 -SAIEEAKKAGIPVFAID   96 (293)
T ss_dssp             -HHHHHHHHTTCCEEEES
T ss_pred             -HHHHHHHHcCCCEEEec
Confidence             233333 4568887663

>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}

Probab=87.71  E-value=1.6  Score=34.71  Aligned_cols=78  Identities=15%  Similarity=0.248  Sum_probs=48.9

Q ss_pred             CCCeEEEEECCCC--c---hHHHHHHHHhCCCeEEEEeCC--C------C--------------CHHHHccCCCCEEEEC
Q 032797           23 NKNPIIVIDNYDS--F---TYNLCQYMGELGYHFEVYRND--E------L--------------TVEELKRKNPRGVLIS   75 (133)
Q Consensus        23 ~~~~i~vid~~~~--~---~~~i~~~l~~~G~~~~v~~~~--~------~--------------~~~~l~~~~~DgvIl~   75 (133)
                      ...+|+||--...  .   ...+.++|.+.|+++.+-+..  .      .              +.+++ ...+|.+|..
T Consensus        37 ~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~l  115 (365)
T 3pfn_A           37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICL  115 (365)
T ss_dssp             CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEE
Confidence            3457888854322  2   245788899999887654210  0      0              00111 1368999999


Q ss_pred             CCCCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797           76 PGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        76 GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                      ||-|      .++...+.+ ..++|++||=.|.
T Consensus       116 GGDG------T~L~aa~~~~~~~~PvlGiN~G~  142 (365)
T 3pfn_A          116 GGDG------TLLYASSLFQGSVPPVMAFHLGS  142 (365)
T ss_dssp             SSTT------HHHHHHHHCSSSCCCEEEEESSS
T ss_pred             cChH------HHHHHHHHhccCCCCEEEEcCCC
Confidence            9854      355666665 5689999999885

>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}

Probab=87.41  E-value=4.3  Score=28.16  Aligned_cols=77  Identities=17%  Similarity=0.088  Sum_probs=42.7

Q ss_pred             CeEEEEECCCCchHHHHHH----HHhCCCeEEEEeCCCC--------------------CHHHHccCCCCEEEECCCCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQY----MGELGYHFEVYRNDEL--------------------TVEELKRKNPRGVLISPGPGA   80 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~----l~~~G~~~~v~~~~~~--------------------~~~~l~~~~~DgvIl~GG~~~   80 (133)
                      |+|++|..-.+++..+.+.    +++.|.+++++...+.                    ..+++.  .+|+||+ |.|--
T Consensus         5 mkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~ii~-gsP~y   81 (199)
T 2zki_A            5 PNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMR--WADGFAI-GSPTR   81 (199)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHH--HCSEEEE-EEECB
T ss_pred             cEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHH--hCCEEEE-ECCcc
Confidence            6888885434555555444    4556889888865432                    133343  6999999 55431


Q ss_pred             cCC-chHHHHHHHHh--------CCCCCEEEEe
Q 032797           81 PQD-SGISLQTVLEL--------GPTVPLFGVC  104 (133)
Q Consensus        81 ~~d-~~~~~~~i~~~--------~~~~PvLGIC  104 (133)
                      -.. ...+..++.++        -.++|+..++
T Consensus        82 ~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~  114 (199)
T 2zki_A           82 YGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFT  114 (199)
T ss_dssp             TTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEE
T ss_pred             ccCccHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence            111 22334444432        2567876555

>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}

Probab=87.37  E-value=0.92  Score=29.27  Aligned_cols=82  Identities=11%  Similarity=0.133  Sum_probs=41.4

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTV   98 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~   98 (133)
                      ..+++|+|+|....+...+.+.|+.. ++.+...-.+... .+.+....+|.+|+--.  -+...+ ...+.+++.....
T Consensus         7 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~   84 (143)
T 2qv0_A            7 GEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDIN--IPSLDGVLLAQNISQFAHKP   84 (143)
T ss_dssp             ---CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSS--CSSSCHHHHHHHHTTSTTCC
T ss_pred             CCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecC--CCCCCHHHHHHHHHccCCCc
Confidence            45678999987655566677788775 6664322221001 12233347998888322  122222 2334444433445


Q ss_pred             CEEEEec
Q 032797           99 PLFGVCM  105 (133)
Q Consensus        99 PvLGICl  105 (133)
                      |++-+.-
T Consensus        85 ~ii~~s~   91 (143)
T 2qv0_A           85 FIVFITA   91 (143)
T ss_dssp             EEEEEES
T ss_pred             eEEEEeC
Confidence            6766653

>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6

Probab=87.34  E-value=6.2  Score=29.36  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             HHHHHHhCCCeEEEEeCCCC----CHHHHccCCCCEEEECCC-CCCcCCchHHHHHHHH-hCCCCCEEEEechH--HHHH
Q 032797           40 LCQYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPG-PGAPQDSGISLQTVLE-LGPTVPLFGVCMGL--QCIG  111 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~~~----~~~~l~~~~~DgvIl~GG-~~~~~d~~~~~~~i~~-~~~~~PvLGIClG~--QlLa  111 (133)
                      +.+.|++.|+++++...++.    +.+.+.  +||.||+.|. .+...+.. ..+.+++ +.++..++||=.|+  +-..
T Consensus        37 i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~l~~~-~~~al~~~V~~GgG~vgiH~a~~~~~y~  113 (252)
T 1t0b_A           37 IASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVKDE-VVERVHRRVLEGMGLIVLHSGHFSKIFK  113 (252)
T ss_dssp             HHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSCHH-HHHHHHHHHHTTCEEEEEGGGGGSHHHH
T ss_pred             HHHHHhhCCcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCcCCHH-HHHHHHHHHHcCCCEEEEcccCCcHHHH
Confidence            46778889999988653221    223343  8999998432 11222222 3344554 57889999995443  4566


Q ss_pred             HHhCCee
Q 032797          112 EAFGDCA  118 (133)
Q Consensus       112 ~a~GG~v  118 (133)
                      ..+||.-
T Consensus       114 ~llGg~f  120 (252)
T 1t0b_A          114 KLMGTTC  120 (252)
T ss_dssp             HHHCSCC
T ss_pred             hhhCCcc
Confidence            7788863

>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}

Probab=87.24  E-value=1.3  Score=32.12  Aligned_cols=80  Identities=18%  Similarity=0.293  Sum_probs=44.5

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (133)
                      ..++|+|+|........+...|+..|+.+..........+.+....+|.+|+-=.  -|...+ .+.+.+++ ....|++
T Consensus        36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~--lp~~~G~~l~~~lr~-~~~~~iI  112 (249)
T 3q9s_A           36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLG--LPDFDGGDVVQRLRK-NSALPII  112 (249)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECC--SCHHHHHHHHHHHHT-TCCCCEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHc-CCCCCEE
Confidence            3468999987555566677888888886654432100112233357998888211  111111 22344444 4568998


Q ss_pred             EEec
Q 032797          102 GVCM  105 (133)
Q Consensus       102 GICl  105 (133)
                      -+.-
T Consensus       113 ~lt~  116 (249)
T 3q9s_A          113 VLTA  116 (249)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            8764

>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*

Probab=87.21  E-value=2.7  Score=29.64  Aligned_cols=34  Identities=9%  Similarity=0.071  Sum_probs=21.7

Q ss_pred             CCeEEEEEC-CCCchHHHHH----HHHhCCCeEEEEeCC
Q 032797           24 KNPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRND   57 (133)
Q Consensus        24 ~~~i~vid~-~~~~~~~i~~----~l~~~G~~~~v~~~~   57 (133)
                      .++|++|.. ..+++..+.+    .+++.|.+++++...
T Consensus         6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~   44 (211)
T 1ydg_A            6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR   44 (211)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence            468888853 2345555444    455578999888754

>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}

Probab=87.02  E-value=0.31  Score=32.07  Aligned_cols=82  Identities=12%  Similarity=0.167  Sum_probs=43.8

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh----CC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----GP   96 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~----~~   96 (133)
                      ...++|+|+|........+.+.|++.|+.+..........+.+....+|.+++-=.  -|...+ ...+.+++.    ..
T Consensus        12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~~~~~   89 (143)
T 3m6m_D           12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQASGMR   89 (143)
T ss_dssp             ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHHTTCC
T ss_pred             cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchhccCC
Confidence            45579999986544555677888888987765432100112233357998887211  122222 345556542    24


Q ss_pred             CCCEEEEec
Q 032797           97 TVPLFGVCM  105 (133)
Q Consensus        97 ~~PvLGICl  105 (133)
                      ..|++-+.-
T Consensus        90 ~~pii~~s~   98 (143)
T 3m6m_D           90 YTPVVVLSA   98 (143)
T ss_dssp             CCCEEEEES
T ss_pred             CCeEEEEeC
Confidence            578888764

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=86.77  E-value=7.1  Score=28.12  Aligned_cols=77  Identities=19%  Similarity=0.297  Sum_probs=42.8

Q ss_pred             CeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797           25 NPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (133)
Q Consensus        25 ~~i~vi--d~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i   91 (133)
                      .+|.++  +..+.|..    .+.+.+++.|+.+.+..... +.+       .+...++||+|+.+......+..  .+.+
T Consensus        16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~--~~~~   92 (298)
T 3tb6_A           16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNN-NPDNERRGLENLLSQHIDGLIVEPTKSALQTPN--IGYY   92 (298)
T ss_dssp             CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTT--HHHH
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHHCCCCEEEEecccccccCCc--HHHH
Confidence            577776  33333433    35566777899998887542 221       12235899999987532211111  1233


Q ss_pred             HHh-CCCCCEEEEe
Q 032797           92 LEL-GPTVPLFGVC  104 (133)
Q Consensus        92 ~~~-~~~~PvLGIC  104 (133)
                      +.+ +.++|+.-+.
T Consensus        93 ~~~~~~~iPvV~~~  106 (298)
T 3tb6_A           93 LNLEKNGIPFAMIN  106 (298)
T ss_dssp             HHHHHTTCCEEEES
T ss_pred             HHHHhcCCCEEEEe
Confidence            332 4568877664

>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*

Probab=86.74  E-value=5.6  Score=27.45  Aligned_cols=77  Identities=17%  Similarity=0.076  Sum_probs=42.2

Q ss_pred             CeEEEEEC-CCCchHHHHH----HHHhCCCeEEEEeCCC-------------------CCHHHHccCCCCEEEECCCCCC
Q 032797           25 NPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGA   80 (133)
Q Consensus        25 ~~i~vid~-~~~~~~~i~~----~l~~~G~~~~v~~~~~-------------------~~~~~l~~~~~DgvIl~GG~~~   80 (133)
                      ++|+||-. ..+++..+.+    .+++.|.+++++...+                   ...+++.  ++|+||+ |.|--
T Consensus         6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~-gsP~y   82 (200)
T 2a5l_A            6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GSPTR   82 (200)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EEECB
T ss_pred             ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHH--HCCEEEE-EcChh
Confidence            47888743 2345555444    4555788888876543                   1133443  7999999 55431


Q ss_pred             cCC-chHHHHHHHHh--------CCCCCEEEEe
Q 032797           81 PQD-SGISLQTVLEL--------GPTVPLFGVC  104 (133)
Q Consensus        81 ~~d-~~~~~~~i~~~--------~~~~PvLGIC  104 (133)
                      -.. ...+..++.++        -.++|+.-++
T Consensus        83 ~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~  115 (200)
T 2a5l_A           83 FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFT  115 (200)
T ss_dssp             TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEE
T ss_pred             ccCccHHHHHHHHHHHHHhhccccCCCEEEEEE
Confidence            111 22344444432        2567776554

>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0

Probab=86.14  E-value=0.53  Score=29.96  Aligned_cols=88  Identities=10%  Similarity=0.083  Sum_probs=51.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP   99 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~P   99 (133)
                      +++|+|+|........+.+.|+..+..+.....    .++.   ....+|.+|+--.  -|...+ ...+.+++.....|
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~----~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~   76 (135)
T 3eqz_A            3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQH----PRAFLTLSLNKQDIIILDLM--MPDMDGIEVIRHLAEHKSPAS   76 (135)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESC----HHHHTTSCCCTTEEEEEECC--TTTTHHHHHHHHHHHTTCCCE
T ss_pred             cceEEEEeCCHHHHHHHHHHHHhhcceeeeecC----HHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHhCCCCCC
Confidence            578999987555566677888877766655432    2222   1123898887322  111122 23455665556788


Q ss_pred             EEEEechH-------HHHHHHhCCe
Q 032797          100 LFGVCMGL-------QCIGEAFGDC  117 (133)
Q Consensus       100 vLGIClG~-------QlLa~a~GG~  117 (133)
                      ++-+.--.       +.+..+++..
T Consensus        77 ii~~s~~~~~~~~~~~~~~~~~~~g  101 (135)
T 3eqz_A           77 LILISGYDSGVLHSAETLALSCGLN  101 (135)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred             EEEEEeccchhHHHHHHHHHHcCCC
Confidence            88776432       4555566654

>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}

Probab=86.12  E-value=1  Score=31.73  Aligned_cols=76  Identities=9%  Similarity=0.042  Sum_probs=44.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      |+|+|+|........+...|+..|+.+..........+.+....+|.+| .++    .+.-...+.+++...+.|++-+.
T Consensus         1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-lp~----~~g~~~~~~lr~~~~~~~ii~lt   75 (223)
T 2hqr_A            1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEKHSSIVVLVSS   75 (223)
T ss_dssp             CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE-ECC----TTHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE-eCC----CCHHHHHHHHHhCCCCCcEEEEE
Confidence            5799998755556667888888888876443210011223334799888 222    11123445555552278998886


Q ss_pred             c
Q 032797          105 M  105 (133)
Q Consensus       105 l  105 (133)
                      -
T Consensus        76 ~   76 (223)
T 2hqr_A           76 D   76 (223)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*

Probab=86.03  E-value=1.7  Score=26.76  Aligned_cols=78  Identities=17%  Similarity=0.288  Sum_probs=44.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      .+|+++|........+...|+..|+++............+....+|.+++--.  .|...+ ...+.+++. ...|++-+
T Consensus         2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~-~~~~ii~~   78 (120)
T 2a9o_A            2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLM--LPEIDGLEVAKTIRKT-SSVPILML   78 (120)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCCEEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHhC-CCCCEEEE
Confidence            47899987555556677888888987764432100112222336898887322  122222 334555543 56899887


Q ss_pred             ec
Q 032797          104 CM  105 (133)
Q Consensus       104 Cl  105 (133)
                      .-
T Consensus        79 s~   80 (120)
T 2a9o_A           79 SA   80 (120)
T ss_dssp             ES
T ss_pred             ec
Confidence            64

>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0

Probab=85.96  E-value=0.97  Score=29.12  Aligned_cols=80  Identities=18%  Similarity=0.217  Sum_probs=43.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHhC--CCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELG--PTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~--~~~Pv  100 (133)
                      .++|+|+|........+.+.|++. +.+..........+.+....+|.+|+--.  -+. +.-.+.+.+++..  .+.|+
T Consensus         3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i   79 (140)
T 3n53_A            3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMD--IIGENSPNLCLKLKRSKGLKNVPL   79 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETT--C------CHHHHHHTSTTCTTCCE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHcCcccCCCCE
Confidence            468999987555556677778776 65554332100112223347998888321  111 1122445566543  68899


Q ss_pred             EEEech
Q 032797          101 FGVCMG  106 (133)
Q Consensus       101 LGIClG  106 (133)
                      +-+.--
T Consensus        80 i~~s~~   85 (140)
T 3n53_A           80 ILLFSS   85 (140)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            887654

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=85.91  E-value=2.3  Score=31.41  Aligned_cols=73  Identities=14%  Similarity=-0.032  Sum_probs=41.0

Q ss_pred             CeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797           25 NPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (133)
Q Consensus        25 ~~i~vid--~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i   91 (133)
                      .+|.++-  ..+.|..    .+.+.+++.|+.+.+.... .+.+       .+...++||||+.+..  +....   +.+
T Consensus         3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~---~~~   76 (313)
T 3m9w_A            3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSAN-GNEETQMSQIENMINRGVDVLVIIPYN--GQVLS---NVV   76 (313)
T ss_dssp             CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSS--TTSCH---HHH
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC--hhhhH---HHH
Confidence            4566662  2334433    3556677889999888664 2221       2223589999997742  11212   234


Q ss_pred             HHh-CCCCCEEEE
Q 032797           92 LEL-GPTVPLFGV  103 (133)
Q Consensus        92 ~~~-~~~~PvLGI  103 (133)
                      +.+ +.++|+.-+
T Consensus        77 ~~~~~~~iPvV~~   89 (313)
T 3m9w_A           77 KEAKQEGIKVLAY   89 (313)
T ss_dssp             HHHHTTTCEEEEE
T ss_pred             HHHHHCCCeEEEE
Confidence            443 556777654

>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A

Probab=85.89  E-value=3.1  Score=28.87  Aligned_cols=57  Identities=16%  Similarity=0.142  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEEC---------CCCchHHHHHHHHhC-----CCeEEEEe--CCCCCHHH----Hc---c-CCCCEEEECC
Q 032797           21 KNNKNPIIVIDN---------YDSFTYNLCQYMGEL-----GYHFEVYR--NDELTVEE----LK---R-KNPRGVLISP   76 (133)
Q Consensus        21 ~~~~~~i~vid~---------~~~~~~~i~~~l~~~-----G~~~~v~~--~~~~~~~~----l~---~-~~~DgvIl~G   76 (133)
                      +...+|+.||--         .|++...+.+.+++.     |+++..+.  .|  +.+.    +.   . .++|.||.+|
T Consensus         2 ~~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittG   79 (167)
T 1uuy_A            2 PGPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPD--EVERIKDILQKWSDVDEMDLILTLG   79 (167)
T ss_dssp             -CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred             CCCCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECC
Confidence            345567877743         234445567888877     88765332  22  2222    21   1 3699999999


Q ss_pred             CCC
Q 032797           77 GPG   79 (133)
Q Consensus        77 G~~   79 (133)
                      |.+
T Consensus        80 G~g   82 (167)
T 1uuy_A           80 GTG   82 (167)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            975

>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A

Probab=85.77  E-value=0.89  Score=32.89  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=35.0

Q ss_pred             CCeEEEEEC---------CCCchHHHHHHHHhCCCe--E---EEEeCCCCCH-HHH---cc-CCCCEEEECCCCC-CcCC
Q 032797           24 KNPIIVIDN---------YDSFTYNLCQYMGELGYH--F---EVYRNDELTV-EEL---KR-KNPRGVLISPGPG-APQD   83 (133)
Q Consensus        24 ~~~i~vid~---------~~~~~~~i~~~l~~~G~~--~---~v~~~~~~~~-~~l---~~-~~~DgvIl~GG~~-~~~d   83 (133)
                      .+|+.||--         +|++...+.+.|++.|++  +   .+++.+.... +.+   .. .++|.||.+||-+ ++.|
T Consensus         3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D   82 (195)
T 1di6_A            3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRD   82 (195)
T ss_dssp             CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTC
T ss_pred             CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCc
Confidence            356666622         355566788899998876  2   2344321111 112   11 2699999999976 4445


Q ss_pred             c
Q 032797           84 S   84 (133)
Q Consensus        84 ~   84 (133)
                      .
T Consensus        83 ~   83 (195)
T 1di6_A           83 V   83 (195)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=85.72  E-value=7.1  Score=28.11  Aligned_cols=76  Identities=13%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             CCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHH
Q 032797           23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQ   89 (133)
Q Consensus        23 ~~~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~   89 (133)
                      ...+|.++-.  .+.|..    .+.+.+++.|+++.+..... +.+       .+...++||||+.+..     .....+
T Consensus         4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~~~~~   77 (291)
T 3l49_A            4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGR-NDQTQVSQIQTLIAQKPDAIIEQLGN-----LDVLNP   77 (291)
T ss_dssp             TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHHCCSEEEEESSC-----HHHHHH
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCC-CHHHHHHHHHHHHHcCCCEEEEeCCC-----hhhhHH
Confidence            3456776633  223322    35566777899998886542 221       1223489999997642     122223


Q ss_pred             HHHHh-CCCCCEEEEe
Q 032797           90 TVLEL-GPTVPLFGVC  104 (133)
Q Consensus        90 ~i~~~-~~~~PvLGIC  104 (133)
                      .++.+ +.++|+.-+-
T Consensus        78 ~~~~~~~~~iPvV~~~   93 (291)
T 3l49_A           78 WLQKINDAGIPLFTVD   93 (291)
T ss_dssp             HHHHHHHTTCCEEEES
T ss_pred             HHHHHHHCCCcEEEec
Confidence            44443 4578877653

>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}

Probab=85.68  E-value=5  Score=30.42  Aligned_cols=81  Identities=11%  Similarity=0.075  Sum_probs=47.2

Q ss_pred             CCCeEEEEECCCC--ch---HHHHHHHHhCC-CeEEEEeCCC-----CCH-HHHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797           23 NKNPIIVIDNYDS--FT---YNLCQYMGELG-YHFEVYRNDE-----LTV-EELKRKNPRGVLISPGPGAPQDSGISLQT   90 (133)
Q Consensus        23 ~~~~i~vid~~~~--~~---~~i~~~l~~~G-~~~~v~~~~~-----~~~-~~l~~~~~DgvIl~GG~~~~~d~~~~~~~   90 (133)
                      ...|||||.-...  +.   ..+.+.|++.| +++++.....     ... +.+  .+||.||+.- .++..... ..+.
T Consensus         3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~~-~~~~l~~~-~~~~   78 (281)
T 4e5v_A            3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLDY-NGDSWPEE-TNRR   78 (281)
T ss_dssp             CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEECC-CSSCCCHH-HHHH
T ss_pred             CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEeC-CCCcCCHH-HHHH
Confidence            3578999954222  22   24667777788 8888875320     001 123  3799999744 23322223 3344


Q ss_pred             HHH-hCCCCCEEEEechH
Q 032797           91 VLE-LGPTVPLFGVCMGL  107 (133)
Q Consensus        91 i~~-~~~~~PvLGIClG~  107 (133)
                      +.+ ++++.+++|+.-+.
T Consensus        79 l~~yV~~Ggglv~~H~a~   96 (281)
T 4e5v_A           79 FLEYVQNGGGVVIYHAAD   96 (281)
T ss_dssp             HHHHHHTTCEEEEEGGGG
T ss_pred             HHHHHHcCCCEEEEeccc
Confidence            444 57789999998654

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*

Probab=85.36  E-value=3.7  Score=30.26  Aligned_cols=52  Identities=21%  Similarity=0.118  Sum_probs=34.3

Q ss_pred             CCeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEEC
Q 032797           24 KNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS   75 (133)
Q Consensus        24 ~~~i~vid~~~~~--------~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~   75 (133)
                      +++|+|+..+.+.        ...+.+++++.|+++.++..++.....+...++|.++..
T Consensus         2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~   61 (306)
T 1iow_A            2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA   61 (306)
T ss_dssp             CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred             CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEc
Confidence            4789999765542        235778899999999888765333333333468887754

>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*

Probab=85.18  E-value=5.3  Score=27.74  Aligned_cols=81  Identities=11%  Similarity=0.049  Sum_probs=44.7

Q ss_pred             CCeEEEEECC---CCchHHHHHHHHh---CCCeEEEEeCCCCCH-----------HH---Hc--cCCCCEEEECCCCCCc
Q 032797           24 KNPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRNDELTV-----------EE---LK--RKNPRGVLISPGPGAP   81 (133)
Q Consensus        24 ~~~i~vid~~---~~~~~~i~~~l~~---~G~~~~v~~~~~~~~-----------~~---l~--~~~~DgvIl~GG~~~~   81 (133)
                      .|+|++|..-   .+++..+.+.+.+   .|.+++++...+.+.           ++   +.  -..+|+||+ +.|---
T Consensus         6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-~sP~y~   84 (193)
T 1rtt_A            6 DIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF-ATPEYN   84 (193)
T ss_dssp             -CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE-ECCEET
T ss_pred             CceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE-Eccccc
Confidence            4689888643   3677777777654   377887765432110           11   11  126899999 544311


Q ss_pred             C-CchHHHHHHHHh-------CCCCCEEEEec
Q 032797           82 Q-DSGISLQTVLEL-------GPTVPLFGVCM  105 (133)
Q Consensus        82 ~-d~~~~~~~i~~~-------~~~~PvLGICl  105 (133)
                      . -...+..+|.++       -.++|+.-|+-
T Consensus        85 ~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t  116 (193)
T 1rtt_A           85 YSMAGVLKNAIDWASRPPEQPFSGKPAAILGA  116 (193)
T ss_dssp             TEECHHHHHHHHHHTCSSSCTTTTCEEEEEEE
T ss_pred             cCcCHHHHHHHHHhccccCcccCCCeEEEEEe
Confidence            1 123344555543       24788877764

>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A

Probab=85.14  E-value=0.51  Score=29.74  Aligned_cols=81  Identities=15%  Similarity=0.233  Sum_probs=44.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhC--CCCCE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELG--PTVPL  100 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~--~~~Pv  100 (133)
                      .++|+|+|........+...|+..|+.+..........+.+....+|.+++-=.  -|...+ ...+.+++..  ...|+
T Consensus         2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i   79 (127)
T 2jba_A            2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGGSGIQFIKHLRRESMTRDIPV   79 (127)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhCcccCCCCE
Confidence            368999987555566677888888987654432100011122336898877211  111122 2344555432  57899


Q ss_pred             EEEech
Q 032797          101 FGVCMG  106 (133)
Q Consensus       101 LGIClG  106 (133)
                      +-+.--
T Consensus        80 i~~s~~   85 (127)
T 2jba_A           80 VMLTAR   85 (127)
T ss_dssp             EEEEET
T ss_pred             EEEeCC
Confidence            887643

>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A

Probab=85.03  E-value=2.7  Score=30.08  Aligned_cols=61  Identities=28%  Similarity=0.413  Sum_probs=36.6

Q ss_pred             CCCCeEEEEEC---------CCCchHHHHHHHHh---CCCeEEEEe--CCCCCHHHH----c---c-CCCCEEEECCCCC
Q 032797           22 NNKNPIIVIDN---------YDSFTYNLCQYMGE---LGYHFEVYR--NDELTVEEL----K---R-KNPRGVLISPGPG   79 (133)
Q Consensus        22 ~~~~~i~vid~---------~~~~~~~i~~~l~~---~G~~~~v~~--~~~~~~~~l----~---~-~~~DgvIl~GG~~   79 (133)
                      ...+++.||--         .|++...+.+.|++   .|+++....  .|  +.+.+    .   . .++|.||.+||-+
T Consensus        12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVIttGGtg   89 (189)
T 1jlj_A           12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPD--EIEEIKETLIDWCDEKELNLILTTGGTG   89 (189)
T ss_dssp             -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred             cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCC--CHHHHHHHHHHHhhcCCCCEEEEcCCCC
Confidence            34568887733         34445568888988   788775332  23  22222    1   1 2699999999976


Q ss_pred             -CcCCc
Q 032797           80 -APQDS   84 (133)
Q Consensus        80 -~~~d~   84 (133)
                       ++.|.
T Consensus        90 ~g~~D~   95 (189)
T 1jlj_A           90 FAPRDV   95 (189)
T ss_dssp             SSTTCC
T ss_pred             CCCccc
Confidence             44444

>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}

Probab=84.52  E-value=2  Score=30.18  Aligned_cols=80  Identities=18%  Similarity=0.268  Sum_probs=46.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      .++|+|+|........+...|+..|+++..........+.+....+|.+|+--.  .|...+ ...+.+++. ...|++-
T Consensus         4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~-~~~~ii~   80 (230)
T 2oqr_A            4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGMSGTDVCKQLRAR-SSVPVIM   80 (230)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHH-CSCSEEE
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHcC-CCCCEEE
Confidence            468999987555566788888888988664432100112222336998887322  122222 334555553 4689888


Q ss_pred             Eech
Q 032797          103 VCMG  106 (133)
Q Consensus       103 IClG  106 (133)
                      +.--
T Consensus        81 lt~~   84 (230)
T 2oqr_A           81 VTAR   84 (230)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            7643

>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}

Probab=84.36  E-value=0.59  Score=30.28  Aligned_cols=80  Identities=6%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh-----CCC
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-----GPT   97 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~-----~~~   97 (133)
                      .++|+|+|........+...|+..|+.+..........+.+....+|.+|+-=.  -|...+ .+.+.+++.     ...
T Consensus        10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~l~~~~~~~~~~~   87 (140)
T 3c97_A           10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQ--MPVMDGLEAVSEIRNYERTHNTKR   87 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTT--CCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHhhhhhcCCCc
Confidence            468999987555556677788888887766532111112233347998887321  122222 334555542     246


Q ss_pred             CCEEEEec
Q 032797           98 VPLFGVCM  105 (133)
Q Consensus        98 ~PvLGICl  105 (133)
                      .|++.+.-
T Consensus        88 ~~ii~~s~   95 (140)
T 3c97_A           88 ASIIAITA   95 (140)
T ss_dssp             CCCEEEES
T ss_pred             eEEEEEeC
Confidence            78887753

>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1

Probab=84.25  E-value=6.3  Score=25.34  Aligned_cols=74  Identities=11%  Similarity=0.054  Sum_probs=41.7

Q ss_pred             EEEE-ECCCCchHHHHHH----HHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-CcCCchH--HHHHHHHh---C
Q 032797           27 IIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSGI--SLQTVLEL---G   95 (133)
Q Consensus        27 i~vi-d~~~~~~~~i~~~----l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~~d~~~--~~~~i~~~---~   95 (133)
                      |+|+ ....+.+..+.+.    +++.|.++++++..+.+.+++.  ++|.+|+ |.|- .-.....  +..++.++   -
T Consensus         2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~-g~p~y~~~~~~~~~~~~fl~~l~~~l   78 (137)
T 2fz5_A            2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCPAMGSEELEDSVVEPFFTDLAPKL   78 (137)
T ss_dssp             EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECCCBTTTBCCHHHHHHHHHHHGGGC
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEE-EccccCCCCCCHHHHHHHHHHhhhhc
Confidence            4444 3333555555544    5557889988887655566664  7999998 4442 1112233  55566553   2


Q ss_pred             CCCCEEEE
Q 032797           96 PTVPLFGV  103 (133)
Q Consensus        96 ~~~PvLGI  103 (133)
                      .++|+.-+
T Consensus        79 ~~k~~~~~   86 (137)
T 2fz5_A           79 KGKKVGLF   86 (137)
T ss_dssp             SSCEEEEE
T ss_pred             CCCEEEEE
Confidence            56776543

>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A

Probab=83.43  E-value=3.5  Score=28.21  Aligned_cols=54  Identities=17%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             CCeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCC-CHHHHcc--CCCCEEEECCCC
Q 032797           24 KNPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDEL-TVEELKR--KNPRGVLISPGP   78 (133)
Q Consensus        24 ~~~i~vi-d~~~~~~~~i~----~~l~~~G~~~~v~~~~~~-~~~~l~~--~~~DgvIl~GG~   78 (133)
                      ..+|+|+ ....+.+..+.    +.+++.|+++++++.... +..++..  .++|+||+ |.|
T Consensus         4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp   65 (159)
T 3fni_A            4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMS   65 (159)
T ss_dssp             CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECC
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcC
Confidence            3467666 33334565544    445667999988887644 5544421  36999999 544

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=83.33  E-value=3.5  Score=35.45  Aligned_cols=82  Identities=9%  Similarity=0.007  Sum_probs=49.2

Q ss_pred             CeEEEEECCC-Cc-------hHHHHHHHHhCCCeEEEEeCCCCCHHHHccC-CCCEEEECCCCCCcC----Cch-HHHHH
Q 032797           25 NPIIVIDNYD-SF-------TYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ----DSG-ISLQT   90 (133)
Q Consensus        25 ~~i~vid~~~-~~-------~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~-~~DgvIl~GG~~~~~----d~~-~~~~~   90 (133)
                      |+|+|||... ..       ...+...|++.|+++......+.-...+... ++|.||+.=.  .|.    ..+ ++.+.
T Consensus         1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~--lp~~~~~~~G~~ll~~   78 (755)
T 2vyc_A            1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK   78 (755)
T ss_dssp             CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECC--CCSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCcccccccHHHHHHH
Confidence            5899997654 44       4567888999999887654321111223333 4999999432  232    111 24556


Q ss_pred             HHHhCCCCCEEEEechHH
Q 032797           91 VLELGPTVPLFGVCMGLQ  108 (133)
Q Consensus        91 i~~~~~~~PvLGIClG~Q  108 (133)
                      ||+...++||+-+.-=.+
T Consensus        79 iR~~~~~iPIi~lTa~~~   96 (755)
T 2vyc_A           79 LHERQQNVPVFLLGDREK   96 (755)
T ss_dssp             HHHHSTTCCEEEEECHHH
T ss_pred             HHHhCCCCCEEEEecCCc
Confidence            666556799998875444

>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*

Probab=83.16  E-value=5.9  Score=25.81  Aligned_cols=71  Identities=10%  Similarity=-0.040  Sum_probs=39.8

Q ss_pred             ECCCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-CcCCch--HHHHHHHHh---CCCCCE
Q 032797           31 DNYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG--ISLQTVLEL---GPTVPL  100 (133)
Q Consensus        31 d~~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~~d~~--~~~~~i~~~---~~~~Pv  100 (133)
                      ....+.+..+.+    .+++.|.++++++..+.+.+++.  ++|.+|+ |.|- .-....  .+.+++.++   -.++++
T Consensus         6 ~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iii-g~pty~~g~~p~~~~~~fl~~l~~~l~~k~~   82 (138)
T 5nul_A            6 WSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELL--NEDILIL-GCSAMTDEVLEESEFEPFIEEISTKISGKKV   82 (138)
T ss_dssp             ECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEE-EECCBTTTBCCTTTHHHHHHHHGGGCTTCEE
T ss_pred             ECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEE-EcCccCCCCCChHHHHHHHHHHHhhcCCCEE
Confidence            333455655544    45667888888876545566664  7999998 4442 111111  344455543   256676


Q ss_pred             EEEe
Q 032797          101 FGVC  104 (133)
Q Consensus       101 LGIC  104 (133)
                      .-++
T Consensus        83 ~~f~   86 (138)
T 5nul_A           83 ALFG   86 (138)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...

Probab=83.10  E-value=2.6  Score=27.90  Aligned_cols=79  Identities=10%  Similarity=0.040  Sum_probs=42.3

Q ss_pred             CeEEEE-ECCCCchHHHHHH----HHhCCCeEEEEeCCCCCHHHHccCC-CCEEEECCCCCC-cCC---chHHHHHHHHh
Q 032797           25 NPIIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGA-PQD---SGISLQTVLEL   94 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~~~----l~~~G~~~~v~~~~~~~~~~l~~~~-~DgvIl~GG~~~-~~d---~~~~~~~i~~~   94 (133)
                      |+++|+ ....+.+..+.+.    +++.|.++++++..+.+.+++.  + +|.+|+ |.|-- -..   ...+..++..+
T Consensus         1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~--~~~d~ii~-~~p~y~~g~~~~p~~~~~fl~~l   77 (147)
T 1f4p_A            1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLF--EGFDLVLL-GCSTWGDDSIELQDDFIPLFDSL   77 (147)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTT--TTCSEEEE-EECEECSSSCEECTTTHHHHHTG
T ss_pred             CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhc--CcCCEEEE-EeCCCCCCCcCCChhHHHHHHHH
Confidence            466666 3333555555554    4556888888775433333343  6 999998 43321 112   12334455542


Q ss_pred             ----CCCCCEEEEech
Q 032797           95 ----GPTVPLFGVCMG  106 (133)
Q Consensus        95 ----~~~~PvLGIClG  106 (133)
                          -.++++.-+|.|
T Consensus        78 ~~~~l~~k~~~v~~~g   93 (147)
T 1f4p_A           78 EETGAQGRKVACFGCG   93 (147)
T ss_dssp             GGSCCTTCEEEEEEEE
T ss_pred             HhcccCCCEEEEEeec
Confidence                246777766654

>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A

Probab=83.00  E-value=1.5  Score=34.06  Aligned_cols=80  Identities=14%  Similarity=0.252  Sum_probs=45.8

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (133)
                      .+++|+|+|........+.+.|++.|+++..........+.+....+|.||+==  .-|...+ ...+.+++...++|++
T Consensus         4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvllD~--~mp~~~G~~~~~~lr~~~~~~pii   81 (394)
T 3eq2_A            4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDL--RMPQIDGLELIRRIRQTASETPII   81 (394)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEECC--CSSSSCTHHHHHHHHHTTCCCCEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCCCCEEEEcC--CCCCCCHHHHHHHHHhhCCCCcEE
Confidence            457899998755556667888988888764321110011223335799888711  1222222 3456666655678988


Q ss_pred             EEe
Q 032797          102 GVC  104 (133)
Q Consensus       102 GIC  104 (133)
                      -+-
T Consensus        82 ~lt   84 (394)
T 3eq2_A           82 VLS   84 (394)
T ss_dssp             EC-
T ss_pred             EEE
Confidence            664

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=82.99  E-value=5.7  Score=28.65  Aligned_cols=57  Identities=9%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEEC-------CCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCC
Q 032797           21 KNNKNPIIVIDN-------YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGP   78 (133)
Q Consensus        21 ~~~~~~i~vid~-------~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~   78 (133)
                      .....+|.++-.       .+.|...    +.+.+++.|+.+.+...+. +.+       .+...++||+|+.+..
T Consensus         5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~vdgiIi~~~~   79 (292)
T 3k4h_A            5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGET-EEEIFNGVVKMVQGRQIGGIILLYSR   79 (292)
T ss_dssp             --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCS-HHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred             cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence            344567777732       3344333    4556677899988765432 111       1223589999997753

>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A

Probab=82.83  E-value=3.5  Score=26.00  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=44.3

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT   97 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~   97 (133)
                      ..++|+|+|........+.+.|++.|+. +..........+.+.. ..+|.+++-=  .-|...+ ...+.+++.  ...
T Consensus         4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~--~~p~~~g~~~~~~lr~~~~~~~   81 (129)
T 3h1g_A            4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDW--NMPEMNGLDLVKKVRSDSRFKE   81 (129)
T ss_dssp             --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECS--CCSSSCHHHHHHHHHTSTTCTT
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeC--CCCCCCHHHHHHHHHhcCCCCC
Confidence            4578999987555566678888888885 3332211001122222 2689877721  1222223 344555552  257


Q ss_pred             CCEEEEec
Q 032797           98 VPLFGVCM  105 (133)
Q Consensus        98 ~PvLGICl  105 (133)
                      .|++-+.-
T Consensus        82 ~pii~~s~   89 (129)
T 3h1g_A           82 IPIIMITA   89 (129)
T ss_dssp             CCEEEEES
T ss_pred             CeEEEEeC
Confidence            89998873

>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}

Probab=82.76  E-value=0.84  Score=29.55  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=43.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      .++|+|+|....+...+...|+..|+.+..........+.+....+|.+++-=.  .|...+ .+.+.+++.. ..|++-
T Consensus         4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~-~~~ii~   80 (136)
T 2qzj_A            4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVT-TCPIVY   80 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTC-CCCEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCC-CCCEEE
Confidence            568999987555566678888888887654432101112233347898887211  111122 2334444433 789887


Q ss_pred             Ee
Q 032797          103 VC  104 (133)
Q Consensus       103 IC  104 (133)
                      +.
T Consensus        81 ls   82 (136)
T 2qzj_A           81 MT   82 (136)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=82.61  E-value=9.7  Score=27.63  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=39.8

Q ss_pred             CCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797           24 KNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT   90 (133)
Q Consensus        24 ~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~   90 (133)
                      +.+|.++-  ..+.|...    +.+.+++.|+.+.+......+.+       .+...++||||+.+...  ....   +.
T Consensus         4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~~---~~   78 (305)
T 3g1w_A            4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP--VELT---DT   78 (305)
T ss_dssp             -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST--TTTH---HH
T ss_pred             CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH--HHHH---HH
Confidence            45676663  23344333    45566778999987432222221       12234899999977431  1112   23


Q ss_pred             HHHh-CCCCCEEEEe
Q 032797           91 VLEL-GPTVPLFGVC  104 (133)
Q Consensus        91 i~~~-~~~~PvLGIC  104 (133)
                      ++++ +.++|+.-+-
T Consensus        79 ~~~~~~~~iPvV~~~   93 (305)
T 3g1w_A           79 INKAVDAGIPIVLFD   93 (305)
T ss_dssp             HHHHHHTTCCEEEES
T ss_pred             HHHHHHCCCcEEEEC
Confidence            3332 4567876553

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A

Probab=82.16  E-value=3.9  Score=30.72  Aligned_cols=53  Identities=13%  Similarity=0.057  Sum_probs=34.8

Q ss_pred             CCCCeEEEEECCCCch--------HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797           22 NNKNPIIVIDNYDSFT--------YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~--------~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl   74 (133)
                      .+.+||+||-.+.|-.        ..+.++|++.|+++..+...+.....+....+|.++.
T Consensus        11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~   71 (317)
T 4eg0_A           11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFN   71 (317)
T ss_dssp             GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred             hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence            3457899997655532        2467889999999988875322233443347898775

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}

Probab=82.14  E-value=4.5  Score=29.47  Aligned_cols=77  Identities=12%  Similarity=-0.034  Sum_probs=40.4

Q ss_pred             CCCCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCC-CCH--------HHHccCCCCEEEECCCCCCcCCchH
Q 032797           22 NNKNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDE-LTV--------EELKRKNPRGVLISPGPGAPQDSGI   86 (133)
Q Consensus        22 ~~~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~-~~~--------~~l~~~~~DgvIl~GG~~~~~d~~~   86 (133)
                      ....+|.++-  ..+.|...    +.+.+++.|+.+.+...+. ...        +.+...++||+|+.+...+    ..
T Consensus         6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~~   81 (290)
T 2rgy_A            6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH----DE   81 (290)
T ss_dssp             --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC----HH
T ss_pred             CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC----HH
Confidence            3445777773  22233322    4556777899988775432 111        1122358999999775321    22


Q ss_pred             HHHHHHHhCCCCCEEEEe
Q 032797           87 SLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        87 ~~~~i~~~~~~~PvLGIC  104 (133)
                      ..+.++  +.++|+.-+.
T Consensus        82 ~~~~l~--~~~iPvV~~~   97 (290)
T 2rgy_A           82 DLDELH--RMHPKMVFLN   97 (290)
T ss_dssp             HHHHHH--HHCSSEEEES
T ss_pred             HHHHHh--hcCCCEEEEc
Confidence            223332  2457877664

>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*

Probab=82.00  E-value=0.99  Score=28.07  Aligned_cols=79  Identities=19%  Similarity=0.312  Sum_probs=44.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      .++|+++|........+.+.|+..|+.+............+....+|.+++--.  .+...+ ...+.+++.....|++.
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~~~~ii~   80 (124)
T 1dc7_A            3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIR--MPGMDGLALLKQIKQRHPMLPVII   80 (124)
T ss_dssp             CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSC--SSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeee--cCCCCHHHHHHHHHhhCCCCCEEE
Confidence            457899987666677788888888887654332111112223346898877321  111111 23455555445677776


Q ss_pred             Ee
Q 032797          103 VC  104 (133)
Q Consensus       103 IC  104 (133)
                      +.
T Consensus        81 ~s   82 (124)
T 1dc7_A           81 MT   82 (124)
T ss_dssp             BC
T ss_pred             Ee
Confidence            54

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A

Probab=81.99  E-value=12  Score=28.21  Aligned_cols=89  Identities=10%  Similarity=0.040  Sum_probs=53.7

Q ss_pred             CCCCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCCC-HHHHc---cCCCCEEEECCCCCCcCCchHHHHH
Q 032797           22 NNKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDELT-VEELK---RKNPRGVLISPGPGAPQDSGISLQT   90 (133)
Q Consensus        22 ~~~~~i~vid~~~~~-------~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~---~~~~DgvIl~GG~~~~~d~~~~~~~   90 (133)
                      ...+|+++|-|..+-       ...+.+.|++.|.++++....... ..++.   ..++|.||+.||-|      .+.+.
T Consensus         6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDG------Tl~~v   79 (304)
T 3s40_A            6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDG------TVFEC   79 (304)
T ss_dssp             CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHH------HHHHH
T ss_pred             CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccch------HHHHH
Confidence            334678877664321       123566788889999887654221 11211   13799999999944      33444


Q ss_pred             HHHh-C--CCCCEEEEechHH-HHHHHhCC
Q 032797           91 VLEL-G--PTVPLFGVCMGLQ-CIGEAFGD  116 (133)
Q Consensus        91 i~~~-~--~~~PvLGIClG~Q-lLa~a~GG  116 (133)
                      +..+ .  .+.|+..|=.|-. -+|..+|-
T Consensus        80 ~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg~  109 (304)
T 3s40_A           80 TNGLAPLEIRPTLAIIPGGTCNDFSRTLGV  109 (304)
T ss_dssp             HHHHTTCSSCCEEEEEECSSCCHHHHHTTC
T ss_pred             HHHHhhCCCCCcEEEecCCcHHHHHHHcCC
Confidence            5543 3  5677777777765 56677664

>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*

Probab=81.77  E-value=5.1  Score=27.64  Aligned_cols=33  Identities=12%  Similarity=0.058  Sum_probs=20.7

Q ss_pred             CeEEEEEC-CCCchHHHH----HHHHh-CCCeEEEEeCC
Q 032797           25 NPIIVIDN-YDSFTYNLC----QYMGE-LGYHFEVYRND   57 (133)
Q Consensus        25 ~~i~vid~-~~~~~~~i~----~~l~~-~G~~~~v~~~~   57 (133)
                      |+|++|.. ..+++..+.    +.+++ .|++++++...
T Consensus         2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~   40 (198)
T 3b6i_A            2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVP   40 (198)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence            47877743 334555444    44566 78899888764

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=81.72  E-value=9  Score=25.34  Aligned_cols=33  Identities=9%  Similarity=0.230  Sum_probs=22.6

Q ss_pred             CCCeEEEEE---CCCCchHHHHHHHHhCCCeEEEEe
Q 032797           23 NKNPIIVID---NYDSFTYNLCQYMGELGYHFEVYR   55 (133)
Q Consensus        23 ~~~~i~vid---~~~~~~~~i~~~l~~~G~~~~v~~   55 (133)
                      .+..|+||.   ..+.+.+.+.+.|.+.|+++..+.
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVn   38 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVG   38 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEES
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEEC
Confidence            345789993   334566778889998898655543

>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A

Probab=81.62  E-value=0.64  Score=29.43  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=42.3

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV   98 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~   98 (133)
                      ..++|+++|........+.+.|+..|+ .+..........+.+....+|.+++-=.  -|...+ ...+.+++.  ....
T Consensus         5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~~   82 (129)
T 1p6q_A            5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANPATKKA   82 (129)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCTTSTTC
T ss_pred             ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCC--CCCCCHHHHHHHHhcCccccCC
Confidence            456899998755555667788888887 3332211000112223346898877221  122222 233444442  2467


Q ss_pred             CEEEEe
Q 032797           99 PLFGVC  104 (133)
Q Consensus        99 PvLGIC  104 (133)
                      |++-+.
T Consensus        83 ~ii~~s   88 (129)
T 1p6q_A           83 AFIILT   88 (129)
T ss_dssp             EEEECC
T ss_pred             CEEEEe
Confidence            887764

>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}

Probab=81.59  E-value=12  Score=27.56  Aligned_cols=86  Identities=16%  Similarity=0.183  Sum_probs=48.1

Q ss_pred             ccCCCCCeEEEEECC---CCchHHHHHH----HHhCCCeEEEEeCCCCC-----------HHHHcc--CCCCEEEECCCC
Q 032797           19 KSKNNKNPIIVIDNY---DSFTYNLCQY----MGELGYHFEVYRNDELT-----------VEELKR--KNPRGVLISPGP   78 (133)
Q Consensus        19 ~~~~~~~~i~vid~~---~~~~~~i~~~----l~~~G~~~~v~~~~~~~-----------~~~l~~--~~~DgvIl~GG~   78 (133)
                      ++....++|++|..-   .+++..+.++    +++.|++++++...+.+           ..++..  ..+|+||+ +.|
T Consensus        29 ~~~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~-~sP  107 (247)
T 2q62_A           29 AFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW-VSP  107 (247)
T ss_dssp             CCCCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE-EEE
T ss_pred             hccCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE-EeC
Confidence            444556789988532   3566555544    45579999887653322           111111  26899999 444


Q ss_pred             C-CcCCchHHHHHHHHh---------CCCCCEEEEec
Q 032797           79 G-APQDSGISLQTVLEL---------GPTVPLFGVCM  105 (133)
Q Consensus        79 ~-~~~d~~~~~~~i~~~---------~~~~PvLGICl  105 (133)
                      - +-.-...+..+|..+         -.+||+.-|+-
T Consensus       108 ~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~t  144 (247)
T 2q62_A          108 ERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQV  144 (247)
T ss_dssp             CSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEE
T ss_pred             CCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEe
Confidence            3 111233444555442         14788877765

>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}

Probab=81.26  E-value=3.6  Score=29.74  Aligned_cols=56  Identities=18%  Similarity=0.092  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797           21 KNNKNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG   77 (133)
Q Consensus        21 ~~~~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG   77 (133)
                      .....+|.++-  ..+.|...    +.+.+++.|+.+.+...+. +.+.....++||+|+.+.
T Consensus         5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~vdgiI~~~~   66 (277)
T 3cs3_A            5 RRQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKK-SHLFIPEKMVDGAIILDW   66 (277)
T ss_dssp             CCCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTT-TTTCCCTTTCSEEEEECT
T ss_pred             ccCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCC-CHHHHhhccccEEEEecC
Confidence            34455777763  23344333    4556677899988876532 111111127999999775

>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*

Probab=81.12  E-value=4  Score=26.99  Aligned_cols=80  Identities=13%  Similarity=0.123  Sum_probs=43.6

Q ss_pred             CeEEEE-ECCCCchHHHHHH----HHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-Cc--CC-chHHHHHHHHh-
Q 032797           25 NPIIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-AP--QD-SGISLQTVLEL-   94 (133)
Q Consensus        25 ~~i~vi-d~~~~~~~~i~~~----l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~--~d-~~~~~~~i~~~-   94 (133)
                      ++|+|+ ....+.+..+.+.    +++.|+++++++..+.+.+++.. ++|.+|+ |.|- .-  .+ ......++..+ 
T Consensus         2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~-~~d~ii~-g~pty~~~~G~~p~~~~~fl~~l~   79 (148)
T 3f6r_A            2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLAD-GYDAVLF-GCSAWGMEDLEMQDDFLSLFEEFD   79 (148)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT-TCSEEEE-EECEECSSSCEECHHHHHHHTTGG
T ss_pred             CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc-cCCEEEE-EecccCCCCCCCcHHHHHHHHHhh
Confidence            466666 3334556555544    55578899888875433344421 6899888 4432 11  01 12344555542 


Q ss_pred             ---CCCCCEEEEech
Q 032797           95 ---GPTVPLFGVCMG  106 (133)
Q Consensus        95 ---~~~~PvLGIClG  106 (133)
                         -.++++.-++.|
T Consensus        80 ~~~l~~k~~~vfg~G   94 (148)
T 3f6r_A           80 RIGLAGRKVAAFASG   94 (148)
T ss_dssp             GTCCTTCEEEEEEEE
T ss_pred             ccCCCCCEEEEEEeC
Confidence               246776666554

>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A

Probab=81.02  E-value=3.6  Score=28.35  Aligned_cols=80  Identities=14%  Similarity=0.239  Sum_probs=44.8

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~-v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv  100 (133)
                      ++++|+|+|........+.+.|+..|+++. .........+.+....+|.+|+-=.  -|...+ ...+.++... ..|+
T Consensus        12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~~~g~~~~~~l~~~~-~~pi   88 (205)
T 1s8n_A           12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASKR-IAPI   88 (205)
T ss_dssp             CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTT-CSCE
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCCChHHHHHHHHhcC-CCCE
Confidence            346899998755556677888888898775 3322100111222346998887221  122222 3345555532 3488


Q ss_pred             EEEec
Q 032797          101 FGVCM  105 (133)
Q Consensus       101 LGICl  105 (133)
                      +-+.-
T Consensus        89 i~lt~   93 (205)
T 1s8n_A           89 VVLTA   93 (205)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87764

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=80.96  E-value=14  Score=26.96  Aligned_cols=76  Identities=13%  Similarity=0.073  Sum_probs=41.3

Q ss_pred             CCCCeEEEE--ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797           22 NNKNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ   89 (133)
Q Consensus        22 ~~~~~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG~~~~~d~~~~~~   89 (133)
                      ....+|.++  +..+.|...    +.+.+++.|+.+.+........      +.+...++||+|+.+...+  + ..   
T Consensus        13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-~~---   86 (303)
T 3kke_A           13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDF--D-DD---   86 (303)
T ss_dssp             ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTC--C-HH---
T ss_pred             CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC--c-HH---
Confidence            344567666  333344333    5566777899998887542211      1233458999999875322  1 11   


Q ss_pred             HHHHh-CCCCCEEEEe
Q 032797           90 TVLEL-GPTVPLFGVC  104 (133)
Q Consensus        90 ~i~~~-~~~~PvLGIC  104 (133)
                      .+..+ + ++|+.-+-
T Consensus        87 ~~~~l~~-~iPvV~i~  101 (303)
T 3kke_A           87 MLAAVLE-GVPAVTIN  101 (303)
T ss_dssp             HHHHHHT-TSCEEEES
T ss_pred             HHHHHhC-CCCEEEEC
Confidence            23332 4 78887664

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=80.95  E-value=9.3  Score=28.09  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             CCeEEEE--ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797           24 KNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG   77 (133)
Q Consensus        24 ~~~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG   77 (133)
                      +.+|.++  +..+.|...    +.+.+++.|+++.+.... .+.+       .+...++||||+.+.
T Consensus         3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiIi~~~   68 (330)
T 3uug_A            3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYAD-DDIPNQLSQIENMVTKGVKVLVIASI   68 (330)
T ss_dssp             CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred             CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3466666  333344333    556677789999887654 2221       222348999999764

>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*

Probab=80.66  E-value=3.6  Score=28.85  Aligned_cols=78  Identities=14%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             CeEEEEECC---CCchHHHHH----H-HHhCCCeEEEEeCCCCCH-----------------HHHccCCCCEEEECCCCC
Q 032797           25 NPIIVIDNY---DSFTYNLCQ----Y-MGELGYHFEVYRNDELTV-----------------EELKRKNPRGVLISPGPG   79 (133)
Q Consensus        25 ~~i~vid~~---~~~~~~i~~----~-l~~~G~~~~v~~~~~~~~-----------------~~l~~~~~DgvIl~GG~~   79 (133)
                      |+|++|..-   .+++..+.+    . +++.|.+++++...+.+.                 +++  ..+|+||+ |.|-
T Consensus         3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i--~~aD~ii~-~sP~   79 (197)
T 2vzf_A            3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDAT--CNADGLIV-ATPI   79 (197)
T ss_dssp             EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHH--HHCSEEEE-EEEC
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHH--HHCCEEEE-EeCc
Confidence            578888543   366665554    4 555688888887543321                 112  26899999 4443


Q ss_pred             -CcCCchHHHHHHHHh----CCCCCEEEEec
Q 032797           80 -APQDSGISLQTVLEL----GPTVPLFGVCM  105 (133)
Q Consensus        80 -~~~d~~~~~~~i~~~----~~~~PvLGICl  105 (133)
                       +-.-...+..++..+    -.++|++-++-
T Consensus        80 y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t  110 (197)
T 2vzf_A           80 YKASYTGLLKAFLDILPQFALAGKAALPLAT  110 (197)
T ss_dssp             BTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred             cCCCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence             111223344555543    24788887765

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}

Probab=80.55  E-value=9  Score=27.73  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=37.2

Q ss_pred             CCCCCeEEEE--ECCCCchHH----HHHHHHhCCCeEEEE-eCCC-CC-----HHHHccCCCCEEEECCCCCCcCCchHH
Q 032797           21 KNNKNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVY-RNDE-LT-----VEELKRKNPRGVLISPGPGAPQDSGIS   87 (133)
Q Consensus        21 ~~~~~~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~-~~~~-~~-----~~~l~~~~~DgvIl~GG~~~~~d~~~~   87 (133)
                      .....+|.++  +..+.|...    +.+.+++.|+++.+. .... ..     .+.+...++||+|+.+...+    ...
T Consensus         5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~   80 (290)
T 3clk_A            5 KKSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT----DDN   80 (290)
T ss_dssp             ---CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC--------C
T ss_pred             cccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC----HHH
Confidence            3444577777  333344333    455667789998876 4321 11     22333458999999764321    111


Q ss_pred             HHHHHHhCCCCCEEEEe
Q 032797           88 LQTVLELGPTVPLFGVC  104 (133)
Q Consensus        88 ~~~i~~~~~~~PvLGIC  104 (133)
                      .+.++  +.++|++-+-
T Consensus        81 ~~~l~--~~~iPvV~~~   95 (290)
T 3clk_A           81 LQLLQ--SSDVPYCFLS   95 (290)
T ss_dssp             HHHHH--CC--CEEEES
T ss_pred             HHHHH--hCCCCEEEEc
Confidence            22222  4578887664

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=80.36  E-value=6  Score=28.87  Aligned_cols=54  Identities=15%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             CCeEEEEECC--CCchHH----HHHHHHhCCCeEEEEeCCCC-CH-------HHHccCCCCEEEECCC
Q 032797           24 KNPIIVIDNY--DSFTYN----LCQYMGELGYHFEVYRNDEL-TV-------EELKRKNPRGVLISPG   77 (133)
Q Consensus        24 ~~~i~vid~~--~~~~~~----i~~~l~~~G~~~~v~~~~~~-~~-------~~l~~~~~DgvIl~GG   77 (133)
                      ..+|.++-..  +.|...    +.+.+++.|+++.+...+.. +.       +.+...++||||+.+.
T Consensus         3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~   70 (297)
T 3rot_A            3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP   70 (297)
T ss_dssp             CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred             eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            4567777332  233332    45566778999988764311 21       2233458999999764

>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A

Probab=80.24  E-value=0.96  Score=28.26  Aligned_cols=79  Identities=14%  Similarity=0.196  Sum_probs=44.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF  101 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~PvL  101 (133)
                      .+|+++|........+.+.|+..|+++............+....+|.+++-=.  .|...+ ...+.+++.  ....|++
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~ii   79 (124)
T 1mb3_A            2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDLAHIPVV   79 (124)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcCccccCCcEE
Confidence            47999987555566778888888987664422100011222336898887211  122222 344556553  2478998


Q ss_pred             EEec
Q 032797          102 GVCM  105 (133)
Q Consensus       102 GICl  105 (133)
                      -+.-
T Consensus        80 ~~s~   83 (124)
T 1mb3_A           80 AVTA   83 (124)
T ss_dssp             EEC-
T ss_pred             EEEC
Confidence            8764

>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A

Probab=80.18  E-value=7.5  Score=28.75  Aligned_cols=89  Identities=15%  Similarity=0.100  Sum_probs=50.5

Q ss_pred             CCeEEEEECCCC--chHHHHHHHHh---CCCeEEEEeCCC----C-CH-----------HHH---ccCCCCEEEECCCCC
Q 032797           24 KNPIIVIDNYDS--FTYNLCQYMGE---LGYHFEVYRNDE----L-TV-----------EEL---KRKNPRGVLISPGPG   79 (133)
Q Consensus        24 ~~~i~vid~~~~--~~~~i~~~l~~---~G~~~~v~~~~~----~-~~-----------~~l---~~~~~DgvIl~GG~~   79 (133)
                      .|||+||+-..+  .+..+.+.++.   .|.+++.+..+.    . +.           +.+   ...++|++|+.-...
T Consensus         1 ~mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~   80 (245)
T 3qvl_A            1 SVRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGD   80 (245)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCC
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCh
Confidence            368999976554  34556666654   355665553321    0 11           111   124799999965422


Q ss_pred             CcCCchHHHHHHHHhCCCCCEEEEechHHHHHHHhCCeee
Q 032797           80 APQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        80 ~~~d~~~~~~~i~~~~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                      +     .+ +.+++. -++||+||.--.-..+...|+++.
T Consensus        81 ~-----~l-~~lr~~-~~iPvigi~e~~~~~a~~~~~rig  113 (245)
T 3qvl_A           81 P-----GL-LAAREL-AQGPVIGIAEAAMHMATMVATRFS  113 (245)
T ss_dssp             T-----TH-HHHHHH-CSSCEEEHHHHHHHHHHHHCSCEE
T ss_pred             h-----HH-HHHHHH-cCCCEECccHHHHHHHHHcCCEEE
Confidence            1     12 556663 249999997655555556677665

>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1

Probab=80.14  E-value=0.22  Score=27.31  Aligned_cols=16  Identities=38%  Similarity=0.586  Sum_probs=13.2

Q ss_pred             EEEEechHHHHHHHhC
Q 032797          100 LFGVCMGLQCIGEAFG  115 (133)
Q Consensus       100 vLGIClG~QlLa~a~G  115 (133)
                      ..|-|+|.|+|..+-|
T Consensus        32 tagacfgaqimvaakg   47 (48)
T 1ehs_A           32 TAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SCCTTTTTHHHHTTTT
T ss_pred             ccccccchhHhhhccc
Confidence            4688999999987765

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=80.02  E-value=14  Score=26.55  Aligned_cols=76  Identities=16%  Similarity=0.226  Sum_probs=42.4

Q ss_pred             CCCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHH
Q 032797           21 KNNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGIS   87 (133)
Q Consensus        21 ~~~~~~i~vid--~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~   87 (133)
                      .....+|.++-  ..+.|..    .+.+.+++.|+.+.+..... +.+       .+...++||+|+.+...    ..  
T Consensus         5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~--   77 (291)
T 3egc_A            5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSEG----EH--   77 (291)
T ss_dssp             --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCSS----CC--
T ss_pred             cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCC----Ch--
Confidence            34456777763  2223332    35556777899999887642 221       22335899999987532    11  


Q ss_pred             HHHHHHh-CCCCCEEEEe
Q 032797           88 LQTVLEL-GPTVPLFGVC  104 (133)
Q Consensus        88 ~~~i~~~-~~~~PvLGIC  104 (133)
                       +.++.+ +.++|+.-+-
T Consensus        78 -~~~~~~~~~~iPvV~~~   94 (291)
T 3egc_A           78 -DYLRTELPKTFPIVAVN   94 (291)
T ss_dssp             -HHHHHSSCTTSCEEEES
T ss_pred             -HHHHHhhccCCCEEEEe
Confidence             234443 4567776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1qdlb_	195	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	1e-24
d1i7qb_	192	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	6e-22
d1wl8a1	188	c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA	2e-14
d1a9xb2	228	c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe	1e-13
d1gpma2	205	c.23.16.1 (A:3-207) GMP synthetase {Escherichia co	2e-13
d2a9va1	196	c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA	2e-10
d1l9xa_	288	c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho	8e-05

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 91.5 bits (226), Expect = 1e-24
 Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 3/101 (2%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---APQD 83
            ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPG     +D
Sbjct: 4   TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRED 63

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCH 124
            G+SL  +  LG   P+ GVC+G Q IG AFG     A   
Sbjct: 64  IGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKV 104

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

 Score = 84.2 bits (207), Expect = 6e-22
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFTYNL   +   G+   +YRN    E+ +E L+      +++SPGPG P +
Sbjct: 3   ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 62

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAW 122
           +G   + +  L   +P+ G+C+G Q I EA+G     A 
Sbjct: 63  AGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG 101

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 64.6 bits (156), Expect = 2e-14
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++DN   + + + + +  LG   ++  N    +EE+K  NP+G++ S GP        
Sbjct: 3   IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGPSLENTGNC 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFS 130
                      VP+ G+C+G Q I + FG          +    
Sbjct: 62  EKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEKAEYSLVE 105

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 62.5 bits (151), Expect = 1e-13
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 5   EAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL 64
           +            KK       ++  D       N+ + + + G    +      + E++
Sbjct: 20  QGSWTLTGGLPQAKKEDELPFHVVAYDF--GAKRNILRMLVDRGCRLTIVPAQT-SAEDV 76

Query: 65  KRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGDCAFSAWC 123
            + NP G+ +S GPG P     ++  + + L   +P+FG+C+G Q +  A G        
Sbjct: 77  LKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKF 136

Query: 124 HAWKKFSC 131
                   
Sbjct: 137 GHHGGNHP 144

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

 Score = 62.2 bits (150), Expect = 2e-13
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 23  NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ 82
           +K+ I+++D    +T  + + + ELG + E++  D  T  +++  NP G+++S GP +  
Sbjct: 4   HKHRILILDFGSQYTQLVARRVRELGVYCELWAWDV-TEAQIRDFNPSGIILSGGPESTT 62

Query: 83  DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131
           +              VP+FGVC G+Q +    G    ++    +     
Sbjct: 63  EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQV 111

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.1 bits (129), Expect = 2e-10
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I V+DN   +T+   + + ELG   ++  ND   ++  +     G+++S G     +   
Sbjct: 4   IYVVDNGGQWTHREWRVLRELGVDTKIVPND---IDSSELDGLDGLVLSGGAPNIDEELD 60

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAW 126
            L +V +         + + +     A    A        
Sbjct: 61  KLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHP 100

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 8e-05
 Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 22/131 (16%)

Query: 24  KNPIIVI-------DNYDSFTY-----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRG 71
           K PII I           ++       +  +Y+   G      R D    +         
Sbjct: 2   KKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSIN 61

Query: 72  VLISPGPGAPQDSGISLQTVLEL----------GPTVPLFGVCMGLQCIGEAFGDCAFSA 121
            ++ PG           +               G   P++G C+G + +           
Sbjct: 62  GILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLT 121

Query: 122 WCHAWKKFSCV 132
                     +
Sbjct: 122 ATDTVDVAMPL 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.94
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.94
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.94
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.94
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.93
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.92
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.84
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	99.65
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	99.64
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	99.61
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	99.59
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.58
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	99.56
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	99.49
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	99.43
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	99.3
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	99.3
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	99.01
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	98.93
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	98.82
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	98.78
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	98.63
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	98.62
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	98.56
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	98.55
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	98.28
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	98.24
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	97.98
d1z0sa1	249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	96.99
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	95.77
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	95.76
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	95.67
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	95.3
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	95.06
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	94.94
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	94.9
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	94.87
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	94.57
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	94.56
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	94.49
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	94.4
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	94.4
d1u0ta_	302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	94.03
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	94.0
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	93.89
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	93.67
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	93.31
d2bona1	295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	93.29
d2arka1	184	Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}	93.25
d1t0ba_	240	GK2113 homologue {Bacillus stearothermophilus [Tax	93.22
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	93.22
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	93.15
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	93.07
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	92.81
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	92.34
d2a5la1	196	Trp repressor binding protein WrbA {Pseudomonas ae	92.26
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	92.21
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	91.98
d1qo0d_	189	Positive regulator of the amidase operon AmiR {Pse	91.4
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	91.03
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	89.64
d1mkza_	170	MoaB {Escherichia coli [TaxId: 562]}	89.36
d2fz5a1	137	Flavodoxin {Megasphaera elsdenii [TaxId: 907]}	89.23
d2nqra3	149	MoeA, central domain {Escherichia coli [TaxId: 562	89.06
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	89.03
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	88.67
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	88.5
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	86.57
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	86.38
d1y5ea1	155	MoaB {Bacillus cereus [TaxId: 1396]}	86.34
d2qv7a1	312	Diacylglycerol kinase DgkB {Staphylococcus aureus	85.69
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	85.26
d1wu2a3	144	MoeA, central domain {Pyrococcus horikoshii, PH164	85.23
d1w25a2	153	Response regulator PleD, receiver domain {Caulobac	85.19
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	84.81
d1uz5a3	148	MoeA, central domain {Archaeon Pyrococcus horikosh	83.84
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	83.19
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	82.35
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	82.3
d2gk3a1	246	Putative cytoplasmic protein STM3548 {Salmonella t	82.05
d8abpa_	305	L-arabinose-binding protein {Escherichia coli [Tax	81.39
d1ehsa_	48	Heat-stable enterotoxin B {Escherichia coli [TaxId	80.14

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=3.3e-27  Score=172.03  Aligned_cols=105  Identities=42%  Similarity=0.684  Sum_probs=88.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHH--HHHH-HHhCCCCCEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS--LQTV-LELGPTVPLF  101 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~--~~~i-~~~~~~~PvL  101 (133)
                      -+++||||+|||+++++++|++.|+++++++++..+.+++....+||++++|||++|++....  ...+ +.++.++|+|
T Consensus         2 ~~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~~~~~~~i~~~~~~~~PiL   81 (195)
T d1qdlb_           2 DLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPIL   81 (195)
T ss_dssp             CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEE
T ss_pred             CEEEEEECCCchHHHHHHHHHhCCCeEEEEeCCCCCHHHHHhhCCCccccCCCCCccccccccccchhhhhhhcCCCCEE
Confidence            379999999999999999999999999999987667777765689999999999999876532  2333 4468899999


Q ss_pred             EEechHHHHHHHhCCeeeeccCCcceee
Q 032797          102 GVCMGLQCIGEAFGDCAFSAWCHAWKKF  129 (133)
Q Consensus       102 GIClG~QlLa~a~GG~v~~~~~~~~g~~  129 (133)
                      |||+|||+|+.++||+|.+.+...+|..
T Consensus        82 GIClG~Qll~~~~G~~v~~~~~~~~~~~  109 (195)
T d1qdlb_          82 GVCLGHQAIGYAFGAKIRRARKVFHGKI  109 (195)
T ss_dssp             EETHHHHHHHHHTTCEEEEEEEEEEEEE
T ss_pred             EeehhhhhhhhccCCEEEeecccccccc
Confidence            9999999999999999998876555543

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=7.8e-27  Score=175.35  Aligned_cols=108  Identities=20%  Similarity=0.378  Sum_probs=95.4

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCE
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPL  100 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~Pv  100 (133)
                      ....||+|+|++..|  ++.+.|++.|+.++++|++ .+.+++...++|||||||||++|.+.+...+.+++ ++.++|+
T Consensus        37 ~~~~~i~~~D~G~k~--~ilr~l~~~~~~~~v~p~~-~~~~~i~~~~pdgivlS~GPg~P~~~~~~~~~~~~~~~~~iPI  113 (228)
T d1a9xb2          37 ELPFHVVAYDFGAKR--NILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPV  113 (228)
T ss_dssp             GCCEEEEEEESSCCH--HHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCE
T ss_pred             CCcceEEEEeCCCcH--HhHhHHHhcCceEEEcCCC-CCHHHHHhcCCCEEEEeCCCCccccchhHHHHHHHHHhCCCCE
Confidence            445689999996554  5789999999999999987 67888877799999999999999999887788887 4889999


Q ss_pred             EEEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797          101 FGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus       101 LGIClG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      ||||+|||+|+.++||+|.+++..++|..+.+
T Consensus       114 LGIClG~Qlia~~~Gg~v~k~~~~~~G~~~~~  145 (228)
T d1a9xb2         114 FGICLGHQLLALASGAKTVKMKFGHHGGNHPV  145 (228)
T ss_dssp             EEETHHHHHHHHHTTCCEEEEEEEEEEEEEEE
T ss_pred             EEEEcChHHHHHHcCCceeecccccccccccc
Confidence            99999999999999999999999899988764

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.94  E-value=7.5e-27  Score=170.69  Aligned_cols=107  Identities=34%  Similarity=0.569  Sum_probs=88.6

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC---HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 032797           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (133)
Q Consensus        26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~---~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (133)
                      +|++|||+|||++++++.|++.|+++++++.+...   .+++...++|+|+++|||++|.+........+.++.++|+||
T Consensus         2 niliiD~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~~~~~i~~~l~~~iPiLG   81 (192)
T d1i7qb_           2 DILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIG   81 (192)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCccccccccccchhhHHhhhcCccEEe
Confidence            68999999999999999999999999999876321   233444589999999999999877654444444688999999


Q ss_pred             EechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797          103 VCMGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus       103 IClG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      ||+|||+|+.++||+|.+.+..++|..+.+
T Consensus        82 IClG~Q~la~~~Gg~v~~~~~~~~g~~~~~  111 (192)
T d1i7qb_          82 ICLGHQAIVEAYGGQVGQAGEILHGKASAI  111 (192)
T ss_dssp             ETHHHHHHHHHTTCEEEEEEEEEEEEEEEE
T ss_pred             eeHHHHHHHHHCCCeEEECCcccccceEEE
Confidence            999999999999999999987777776543

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=2.4e-26  Score=166.28  Aligned_cols=105  Identities=23%  Similarity=0.391  Sum_probs=90.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGI  103 (133)
                      |||+|||++++|++++.++|+++|++++++|++ .+.+++....+|||+++|||+.+.+... ..++++ .+.++|+|||
T Consensus         1 mmI~iiD~g~~~~~~i~~~L~~~G~~~~v~~~~-~~~~~~~~~~~~gvilsgg~~~~~~~~~-~~~i~~~~~~~~PiLGI   78 (188)
T d1wl8a1           1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSLENTGNC-EKVLEHYDEFNVPILGI   78 (188)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETT-CCHHHHHHTCCSEEEECCCSCTTCCTTH-HHHHHTGGGTCSCEEEE
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCC-CCHHHHhhhccceeeeccCccccccccc-ccccccccccccceeeh
Confidence            789999999999999999999999999999986 5677777678999999999988776554 345665 4788999999


Q ss_pred             echHHHHHHHhCCeeeeccCCcceeeee
Q 032797          104 CMGLQCIGEAFGDCAFSAWCHAWKKFSC  131 (133)
Q Consensus       104 ClG~QlLa~a~GG~v~~~~~~~~g~~~~  131 (133)
                      |+|||+|+.++|+++.+.+...+|+.++
T Consensus        79 ClG~Q~l~~~~G~~~~~~~~~~~g~~~~  106 (188)
T d1wl8a1          79 CLGHQLIAKFFGGKVGRGEKAEYSLVEI  106 (188)
T ss_dssp             THHHHHHHHHHTCEEEECSCCSCEEEEE
T ss_pred             hhhhhhhhhhcCCcccccccccccceeE
Confidence            9999999999999999988877777654

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.5e-26  Score=169.68  Aligned_cols=107  Identities=23%  Similarity=0.413  Sum_probs=91.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG  102 (133)
                      ..||+|||+++++++++.++|+++|+++++++++ .+.++.....+||++++|||++|.+..... .+.. ++.++|+||
T Consensus         5 ~~kI~IiD~G~~~~~~I~r~lr~lg~~~~I~~~d-~~~~~~~~~~~~giils~gp~~~~~~~~~~-~~~~~~~~~~PiLG   82 (205)
T d1gpma2           5 KHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPR-APQYVFEAGVPVFG   82 (205)
T ss_dssp             SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCCC-CCGGGGTSSSCEEE
T ss_pred             cCeEEEEECCchHHHHHHHHHHHCCCEEEEECCC-CCHHHHhhcCCCeEEecCCCCccchhhhhh-HHHHHHhCCCCEEE
Confidence            3589999999999999999999999999999986 566666656899999999999998765432 2333 578899999


Q ss_pred             EechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797          103 VCMGLQCIGEAFGDCAFSAWCHAWKKFSCV  132 (133)
Q Consensus       103 IClG~QlLa~a~GG~v~~~~~~~~g~~~~~  132 (133)
                      ||+|||+|+.++||++.+.+..++|+.+.+
T Consensus        83 IClG~Qlla~~~Gg~v~~~~~~~~G~~~~~  112 (205)
T d1gpma2          83 VCYGMQTMAMQLGGHVEASNEREFGYAQVE  112 (205)
T ss_dssp             ETHHHHHHHHHHTCEEECCSSCEEEEEEEE
T ss_pred             eccchhhhhhhcCCccccccccccCcceec
Confidence            999999999999999999998888887654

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1.1e-25  Score=164.46  Aligned_cols=104  Identities=24%  Similarity=0.322  Sum_probs=85.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHH-HHHHHHh-CCCCCEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS-LQTVLEL-GPTVPLF  101 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~-~~~i~~~-~~~~PvL  101 (133)
                      .+||+||||+++|++++.++|++.|++++++|++ .+.+++.  ++||||++||++++.+.... .++++.+ +.++|+|
T Consensus         1 m~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~d-~~~~~~~--~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~~~~Pil   77 (196)
T d2a9va1           1 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPIL   77 (196)
T ss_dssp             CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETT-SCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEE
T ss_pred             CCEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCC-CCHHHHh--cCCcEEEeccccccccccchhhhHHHHHhhcCceEE
Confidence            3799999999999999999999999999999976 4556654  79999999999988766544 3344443 6789999


Q ss_pred             EEechHHHHHHHhCCeeeeccCCcceeee
Q 032797          102 GVCMGLQCIGEAFGDCAFSAWCHAWKKFS  130 (133)
Q Consensus       102 GIClG~QlLa~a~GG~v~~~~~~~~g~~~  130 (133)
                      |||+|||+|+.++||++.+.....++...
T Consensus        78 GIC~G~Qll~~~~gg~~~~~~~~~~~~~~  106 (196)
T d2a9va1          78 GICVGAQFIALHFGASVVKAKHPEFGKTK  106 (196)
T ss_dssp             EETHHHHHHHHHTTCEEEEEEEEEEEEEE
T ss_pred             Eeehhhhhhhhccccccccccccccccce
Confidence            99999999999999999987765555443

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=2.2e-21  Score=145.10  Aligned_cols=99  Identities=14%  Similarity=0.257  Sum_probs=77.5

Q ss_pred             CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCCCcCCchH------HHHHHHH
Q 032797           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE   93 (133)
Q Consensus        23 ~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~   93 (133)
                      .+|||++|++.+.. ...+.++|++.|+++++++....+  ++++  .+||++|++|||+++++...      ..++|++
T Consensus         2 ~~mrvli~qh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~~~p~~l--~~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~   79 (230)
T d1o1ya_           2 HHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEE   79 (230)
T ss_dssp             CCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCcHHHHHHHHHCCCEEEEEECCCCCcCCcch--hhCCEEEEcCCCcccccchhhhhhHHHHHHHHH
Confidence            46899999876543 456899999999999988653211  1223  26999999999999987542      3566776


Q ss_pred             h-CCCCCEEEEechHHHHHHHhCCeeeeccC
Q 032797           94 L-GPTVPLFGVCMGLQCIGEAFGDCAFSAWC  123 (133)
Q Consensus        94 ~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~  123 (133)
                      + +.++|+||||+|||+|+.++||+|.+++.
T Consensus        80 ~~~~~~PilGIC~G~Qlla~alGg~V~~~~~  110 (230)
T d1o1ya_          80 ILKKEIPFLGICLGSQMLAKVLGASVYRGKN  110 (230)
T ss_dssp             HHHHTCCEEEETHHHHHHHHHTTCCEEECTT
T ss_pred             HHHhcceEEEeecCHHHHHHHhccccccccc
Confidence            4 67899999999999999999999998764

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.65  E-value=3.9e-17  Score=119.07  Aligned_cols=89  Identities=15%  Similarity=0.244  Sum_probs=67.6

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CC
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GP   96 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~   96 (133)
                      .++|||.||++. +..++..++|++.|+++++++.    .+++.  ++|++||+||+.+.....    .+.++|+++ ++
T Consensus         4 ~~~mkIgii~~~-Gn~~s~~~al~~~G~~~~~v~~----~~~l~--~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~   76 (202)
T d1q7ra_           4 QSNMKIGVLGLQ-GAVREHVRAIEACGAEAVIVKK----SEQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAA   76 (202)
T ss_dssp             CCCCEEEEESCG-GGCHHHHHHHHHTTCEEEEECS----GGGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccCCEEEEEECC-CCHHHHHHHHHHCCCcEEEECC----HHHHh--cCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccc
Confidence            568999999884 4557888999999999998853    35664  799999999764332111    135677774 78


Q ss_pred             CCCEEEEechHHHHHHHhCCe
Q 032797           97 TVPLFGVCMGLQCIGEAFGDC  117 (133)
Q Consensus        97 ~~PvLGIClG~QlLa~a~GG~  117 (133)
                      ++|+||||+|||+|+...++.
T Consensus        77 gkPiLGIClG~Qll~~~~~~~   97 (202)
T d1q7ra_          77 GKPMFGTCAGLILLAKRIVGY   97 (202)
T ss_dssp             TCCEEEETTHHHHHEEEEESS
T ss_pred             cceeeeeehhhHHhhhhcccc
Confidence            999999999999999865553

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=7.8e-17  Score=116.92  Aligned_cols=88  Identities=17%  Similarity=0.243  Sum_probs=64.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCCC
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTV   98 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~----~~~~~~i~~~-~~~~   98 (133)
                      .|+|.|||.. +...+..++|+++|+++.+++.    .+++.  ++|++||+||+.++...    ..+.+.|+++ ++++
T Consensus         1 m~~igv~~~~-G~~~~~~~al~~~G~~~~~i~~----~~~l~--~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~   73 (195)
T d2nv0a1           1 MLTIGVLGLQ-GAVREHIHAIEACGAAGLVVKR----PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGK   73 (195)
T ss_dssp             CCEEEEECSS-SCCHHHHHHHHHTTCEEEEECS----GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcEEEEEecC-ChHHHHHHHHHHCCCcEEEECC----HHHHh--hCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcc
Confidence            4789999984 4556788999999999988853    34564  79999999975432211    1234667664 7899


Q ss_pred             CEEEEechHHHHHHHhCCee
Q 032797           99 PLFGVCMGLQCIGEAFGDCA  118 (133)
Q Consensus        99 PvLGIClG~QlLa~a~GG~v  118 (133)
                      |+||||+|||+|++++++..
T Consensus        74 pilGIC~G~Qll~~~~~g~~   93 (195)
T d2nv0a1          74 PMFGTCAGLIILAKEIAGSD   93 (195)
T ss_dssp             CEEEETHHHHHHSBCCC---
T ss_pred             eeeeccccHHHHHhhhcccc
Confidence            99999999999999998853

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=6.9e-18  Score=122.39  Aligned_cols=87  Identities=20%  Similarity=0.143  Sum_probs=58.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPT   97 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~-~~~~   97 (133)
                      |||+|||++.++.+++.++|++.|.....++....+.++.  ..+|+||| ||+|+..+..      .+.+.|++ ++++
T Consensus         1 MKI~IiDyg~gN~~si~~al~~~g~~~~~~~~~~~~~~~~--~~~D~lIl-PG~G~f~~~~~~l~~~~~~~~i~~~~~~~   77 (200)
T d1k9vf_           1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN--DLYDLLFI-PGVGHFGEGMRRLRENDLIDFVRKHVEDE   77 (200)
T ss_dssp             CEEEEECSSSSCCHHHHHHHHHHTTTSSSCEEEEESSSCS--CCCSEEEE-CCCSCHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHhccccccceEEEeCChHh--hccCeEEE-cChHHHHHHHHhhhccccccccccccccc
Confidence            7899999998899999999998775332211100011122  36999999 5556532211      13456666 4778


Q ss_pred             CCEEEEechHHHHHHHh
Q 032797           98 VPLFGVCMGLQCIGEAF  114 (133)
Q Consensus        98 ~PvLGIClG~QlLa~a~  114 (133)
                      +|+||||+|||+|+.+.
T Consensus        78 ~PiLGIClG~QlL~~~~   94 (200)
T d1k9vf_          78 RYVVGVCLGMQLLFEES   94 (200)
T ss_dssp             CEEEEETHHHHTTEEEE
T ss_pred             ceEEEEecceeEEeeec
Confidence            99999999999999764

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=1e-15  Score=108.94  Aligned_cols=82  Identities=18%  Similarity=0.319  Sum_probs=63.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC------CchHHHHHHHH-hCCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ------DSGISLQTVLE-LGPT   97 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~------d~~~~~~~i~~-~~~~   97 (133)
                      |||+|||++.++++++.++|++.|+++++++..    +++.  ++|++|++||+....      +.+ ....+.. ...+
T Consensus         1 Mki~IiD~G~gN~~si~~~l~~lg~~~~i~~~~----~~i~--~~d~lIlpG~g~~~~~~~~~~~~~-~~~~~~~~~~~g   73 (195)
T d1ka9h_           1 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP----KAHE--EADLLVLPGQGHFGQVMRAFQESG-FVERVRRHLERG   73 (195)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST----TSCS--SCSEEEECCCSCHHHHHHTTSSSC-THHHHHHHHHTT
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHCCCeEEEECCH----HHHH--HHhhhhcCCCccccchhhhccccC-Cccccccccccc
Confidence            789999999999999999999999999987532    3443  789999988754211      112 2233443 4678


Q ss_pred             CCEEEEechHHHHHHH
Q 032797           98 VPLFGVCMGLQCIGEA  113 (133)
Q Consensus        98 ~PvLGIClG~QlLa~a  113 (133)
                      +|+||||+|||+|+..
T Consensus        74 ~pilGiClG~qll~~~   89 (195)
T d1ka9h_          74 LPFLGICVGMQVLYEG   89 (195)
T ss_dssp             CCEEECTHHHHTTSSE
T ss_pred             chhhhhhhhhheeeec
Confidence            9999999999999864

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.5e-15  Score=113.34  Aligned_cols=84  Identities=19%  Similarity=0.307  Sum_probs=60.9

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCchH------HHHH-HHH--hCCCCCEEEEech
Q 032797           38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGI------SLQT-VLE--LGPTVPLFGVCMG  106 (133)
Q Consensus        38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~~------~~~~-i~~--~~~~~PvLGIClG  106 (133)
                      .+++++++.+|+.+.+++++ .+.+++..  ...||||++||+.+......      ..++ +..  ..+++|+||||+|
T Consensus        28 ~sYvk~ie~aGa~vvpi~~~-~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G  106 (288)
T d1l9xa_          28 ASYVKYLESAGARVVPVRLD-LTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLG  106 (288)
T ss_dssp             HHHHHHHHHTTCEEEEECSS-CCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHH
T ss_pred             HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHhhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHH
Confidence            46789999999999999876 34444431  26899999999765543321      1121 222  2577999999999


Q ss_pred             HHHHHHHhCCeeeecc
Q 032797          107 LQCIGEAFGDCAFSAW  122 (133)
Q Consensus       107 ~QlLa~a~GG~v~~~~  122 (133)
                      ||+|+.++||++.+..
T Consensus       107 ~Qll~~~~gG~~~~~~  122 (288)
T d1l9xa_         107 FEELSLLISGECLLTA  122 (288)
T ss_dssp             HHHHHHHHHSSCCCEE
T ss_pred             HHHHHHHhCCEeeccc
Confidence            9999999999987654

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.49  E-value=4.8e-15  Score=107.94  Aligned_cols=93  Identities=15%  Similarity=0.194  Sum_probs=62.1

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC---c-h--HHHH-HHHHh
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---S-G--ISLQ-TVLEL   94 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d---~-~--~~~~-~i~~~   94 (133)
                      +.++|.||+..+++ .+..++|+++|.+ +++....  +.+++.  ++|++||+||......   . .  ...+ +++..
T Consensus         1 ~~ikIGvl~l~G~~-~~~~~al~~lg~~~~~v~~~~--~~~~l~--~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~   75 (218)
T d2abwa1           1 SEITIGVLSLQGDF-EPHINHFIKLQIPSLNIIQVR--NVHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFI   75 (218)
T ss_dssp             CCEEEEEECTTSCC-HHHHHHHHTTCCTTEEEEEEC--SHHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCcH-HHHHHHHHHcCCCceEEEEeC--CHHHHh--hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHH
Confidence            36899999985555 5677899998853 3333332  467776  7999999987432211   1 1  1223 33333


Q ss_pred             -CCCCCEEEEechHHHHHHHhCCeeee
Q 032797           95 -GPTVPLFGVCMGLQCIGEAFGDCAFS  120 (133)
Q Consensus        95 -~~~~PvLGIClG~QlLa~a~GG~v~~  120 (133)
                       ..++|+||||+|||+|+...++....
T Consensus        76 ~~~gkPilGIC~G~QlL~~~~~~~~~~  102 (218)
T d2abwa1          76 HVLKKPIWGTCAGCILLSKNVENIKLY  102 (218)
T ss_dssp             HTSCCCEEEETHHHHHTEEEEECCCSC
T ss_pred             HHcCCeEEEecHHHHHHHHhccCCccc
Confidence             67999999999999999877665443

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=99.43  E-value=6.7e-14  Score=107.10  Aligned_cols=115  Identities=10%  Similarity=0.110  Sum_probs=74.3

Q ss_pred             cccccCCCC-CeEEEEECCCCch---HHHHHHHHhCCCeEEEE--eCCC---------------CCHHHHccCCCCEEEE
Q 032797           16 DDKKSKNNK-NPIIVIDNYDSFT---YNLCQYMGELGYHFEVY--RNDE---------------LTVEELKRKNPRGVLI   74 (133)
Q Consensus        16 ~~~~~~~~~-~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~--~~~~---------------~~~~~l~~~~~DgvIl   74 (133)
                      +++++|... +||+|++.-..-.   ..+.+.|.....++.+.  ....               .+.+++...+|||+||
T Consensus        10 ~~a~~qdirpL~I~iLNlMP~k~~TE~qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglII   89 (281)
T d2ghra1          10 ERAETQDIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLII   89 (281)
T ss_dssp             CCCCCTTSCCEEEEEECCCSSHHHHHHHHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEE
T ss_pred             hhhhhcCcceeEEEEEecCCcchhhHHHHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEE
Confidence            456777554 5999997633221   12555555444444432  2110               1345565568999999


Q ss_pred             CCCCCCcCCch------HHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeeeec-cCCcceeee
Q 032797           75 SPGPGAPQDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSA-WCHAWKKFS  130 (133)
Q Consensus        75 ~GG~~~~~d~~------~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~-~~~~~g~~~  130 (133)
                      ||+|.+..+.+      ++.++++.. .+.+|+||||+|+|+++.++||.+.+. ++.++|...
T Consensus        90 TGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~~~k~~Gv~~  153 (281)
T d2ghra1          90 TGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFE  153 (281)
T ss_dssp             CCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEE
T ss_pred             eCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccCCCceEEEEE
Confidence            99998764322      234555554 567999999999999999999987765 566777654

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=5.3e-13  Score=100.28  Aligned_cols=94  Identities=22%  Similarity=0.314  Sum_probs=62.4

Q ss_pred             CCeEEEEE----CCCCchHHHHHHHHh----CCCeEEEEeCC--CC---CHHHHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797           24 KNPIIVID----NYDSFTYNLCQYMGE----LGYHFEVYRND--EL---TVEELKRKNPRGVLISPGPGAPQDSGISLQT   90 (133)
Q Consensus        24 ~~~i~vid----~~~~~~~~i~~~l~~----~G~~~~v~~~~--~~---~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~   90 (133)
                      ..+|+++.    ..|+|. ++.++|+.    .+.++.+...+  ..   +..+.. .++|||+++||.|....++.+ ..
T Consensus         3 ~v~IaiVGKY~~l~DaY~-Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L-~~~dGIlvPGGFG~rG~eGki-~a   79 (250)
T d1vcoa1           3 TVKIAIAGKYVKMPDAYL-SLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEGKV-RA   79 (250)
T ss_dssp             EEEEEEEESCC---CTTH-HHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHHHH-HH
T ss_pred             eEEEEEEeCCCCCchHHH-HHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHH-hcCCeEEecCCCCccchHHHH-HH
Confidence            35788883    445663 66777765    35555554332  11   222222 389999999999865555544 45


Q ss_pred             HHHh-CCCCCEEEEechHHHHHHHhCCeeee
Q 032797           91 VLEL-GPTVPLFGVCMGLQCIGEAFGDCAFS  120 (133)
Q Consensus        91 i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~  120 (133)
                      ++.. ++++|+||||+|||++...+...|..
T Consensus        80 i~yARen~iPfLGIClGmQ~avIEfARnvlg  110 (250)
T d1vcoa1          80 AQYARERKIPYLGICLGLQIAVIEFARNVAG  110 (250)
T ss_dssp             HHHHHHTTCCEEEETHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            6654 78999999999999999988777654

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=9.7e-13  Score=99.21  Aligned_cols=93  Identities=17%  Similarity=0.248  Sum_probs=62.8

Q ss_pred             CeEEEEEC----CCCchHHHHHHHHh----CCCeEEEEeCCCCCHHHH--c-cCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797           25 NPIIVIDN----YDSFTYNLCQYMGE----LGYHFEVYRNDELTVEEL--K-RKNPRGVLISPGPGAPQDSGISLQTVLE   93 (133)
Q Consensus        25 ~~i~vid~----~~~~~~~i~~~l~~----~G~~~~v~~~~~~~~~~l--~-~~~~DgvIl~GG~~~~~d~~~~~~~i~~   93 (133)
                      .+|+++.-    .|+|. ++.++|+.    .+..+++...+....++-  . -.++|||+++||.|....++.+ ..++.
T Consensus         4 v~Ia~vGKY~~l~DaY~-Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~RG~eGki-~ai~y   81 (258)
T d1s1ma1           4 VTIGMVGKYIELPDAYK-SVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMI-TTARF   81 (258)
T ss_dssp             EEEEEEESSCSSGGGGH-HHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHHHHH-HHHHH
T ss_pred             eEEEEEeCcCCCchhHH-hHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccCcCCHHHHH-HHHHH
Confidence            57888844    44553 56777765    356666665432112111  0 1489999999998865555554 56665


Q ss_pred             -hCCCCCEEEEechHHHHHHHhCCeee
Q 032797           94 -LGPTVPLFGVCMGLQCIGEAFGDCAF  119 (133)
Q Consensus        94 -~~~~~PvLGIClG~QlLa~a~GG~v~  119 (133)
                       .++++|+||||+|||+++.++...|.
T Consensus        82 ARen~iPfLGIClGmQ~avIE~ARnvl  108 (258)
T d1s1ma1          82 ARENNIPYLGICLGMQVALIDYARHVA  108 (258)
T ss_dssp             HHHTTCCEEEETHHHHHHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHhC
Confidence             47899999999999999998876654

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=2.5e-10  Score=86.19  Aligned_cols=90  Identities=14%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCC--CcCCchH----------
Q 032797           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPG--APQDSGI----------   86 (133)
Q Consensus        22 ~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~--~~~d~~~----------   86 (133)
                      .+.+||+||.+.++. .+....+|+.+|++++.+...+.-  ..++  .+||+++++||..  +....+.          
T Consensus         4 ~~kpkvaVl~~pGtNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L--~~~~~lvipGGFSygD~l~ag~~~a~~~~~~~   81 (262)
T d1t3ta2           4 GARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFSYGDVLGAGEGWAKSILFNH   81 (262)
T ss_dssp             TCCCEEEEEECTTBCCHHHHHHHHHHTTCEEEEEEHHHHHHTSCCG--GGCSEEEECCBCGGGGTTSTTHHHHHHHHHSH
T ss_pred             CCCCeEEEEeCCCCCcHHHHHHHHHHcCCceEEEEeeecccCcccc--cccceEEEeccccccccccchhHHHhhhhhhh
Confidence            456799999887766 456888999999999988753110  0122  3799999999854  3322221          


Q ss_pred             -HHHHHHH-h-CCCCCEEEEechHHHHHHH
Q 032797           87 -SLQTVLE-L-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        87 -~~~~i~~-~-~~~~PvLGIClG~QlLa~a  113 (133)
                       ....+.+ + ..++|+||||-|+|+|.+.
T Consensus        82 ~~~~~~~~f~~~~~~~iLGICNGfQiL~el  111 (262)
T d1t3ta2          82 RVRDEFETFFHRPQTLALGVCNGCQMMSNL  111 (262)
T ss_dssp             HHHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCCceEEeechHHHHHHHh
Confidence             1222333 3 5789999999999999874

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=7.9e-10  Score=81.16  Aligned_cols=92  Identities=15%  Similarity=0.151  Sum_probs=65.2

Q ss_pred             CeEEEEE----CCCCchH----HHHHHHHhCCCeEEEEeCCCC--------------------------------CHHHH
Q 032797           25 NPIIVID----NYDSFTY----NLCQYMGELGYHFEVYRNDEL--------------------------------TVEEL   64 (133)
Q Consensus        25 ~~i~vid----~~~~~~~----~i~~~l~~~G~~~~v~~~~~~--------------------------------~~~~l   64 (133)
                      .||+||=    ++|++..    .....|+++|++++++.++..                                +.+++
T Consensus         2 kKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v   81 (217)
T d1vhqa_           2 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA   81 (217)
T ss_dssp             CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred             CEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHC
Confidence            4787772    3455432    256789999999998865310                                12334


Q ss_pred             ccCCCCEEEECCCCCCcCC-------------chHHHHHHHHh-CCCCCEEEEechHHHHHHHhCC
Q 032797           65 KRKNPRGVLISPGPGAPQD-------------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGD  116 (133)
Q Consensus        65 ~~~~~DgvIl~GG~~~~~d-------------~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG  116 (133)
                      ...+||+|+|+||.+...+             .....++++++ ++++|+.+||.|.++|+.+++-
T Consensus        82 ~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~  147 (217)
T d1vhqa_          82 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDF  147 (217)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSS
T ss_pred             CHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhcc
Confidence            4458999999999875322             13456788885 7899999999999999998654

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=2.5e-09  Score=74.56  Aligned_cols=88  Identities=13%  Similarity=0.226  Sum_probs=62.4

Q ss_pred             CeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCCcC--Cc
Q 032797           25 NPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAPQ--DS   84 (133)
Q Consensus        25 ~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~~~--d~   84 (133)
                      |||+++-+ ++|..    ...+.|++.|++++++..+.              .+.++....+||++|++||++...  ..
T Consensus         1 mKv~il~~-dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~~   79 (166)
T d1g2ia_           1 MKVLFLTA-NEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLN   79 (166)
T ss_dssp             CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTC
T ss_pred             CEEEEEeC-CCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccchhhhccC
Confidence            68887743 34422    35678899999998876532              112333334799999999975322  34


Q ss_pred             hHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        85 ~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ....++++++ ++++|+.+||.|..+|+.+
T Consensus        80 ~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  109 (166)
T d1g2ia_          80 EKAVSIARKMFSEGKPVASICHGPQILISA  109 (166)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred             hHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence            4567888885 7899999999999999986

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=6.2e-09  Score=73.01  Aligned_cols=88  Identities=16%  Similarity=0.272  Sum_probs=60.8

Q ss_pred             CeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC----------------CCHHHHccCCCCEEEECCCCCCc--C
Q 032797           25 NPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE----------------LTVEELKRKNPRGVLISPGPGAP--Q   82 (133)
Q Consensus        25 ~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~----------------~~~~~l~~~~~DgvIl~GG~~~~--~   82 (133)
                      +||+|+-. |+|.    ..+.+.|++.|++++++....                .+.++....+||+||++||.+.-  .
T Consensus         2 KkIail~~-dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~~~l~   80 (170)
T d1oi4a1           2 KKIAVLIT-DEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLR   80 (170)
T ss_dssp             CEEEEECC-TTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHT
T ss_pred             CEEEEEeC-CCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchhhhhhc
Confidence            57887743 2332    235678999999988775421                01223333479999999996422  2


Q ss_pred             CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        83 d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      ......++++++ ++++|+.+||.|..+|+.+
T Consensus        81 ~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~  112 (170)
T d1oi4a1          81 GDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  112 (170)
T ss_dssp             TSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             cChHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence            345567889885 7899999999999999874

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=98.63  E-value=1.7e-08  Score=69.81  Aligned_cols=90  Identities=12%  Similarity=0.066  Sum_probs=62.5

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCCc-CC
Q 032797           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP-QD   83 (133)
Q Consensus        23 ~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~~-~d   83 (133)
                      .+.||+|+-+. ++.    ..+.+.|++.|+++.++....              .+.++.+...||+|||+||..+. ..
T Consensus         2 ~grkVaiLv~d-g~~~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~~l~~   80 (156)
T d1p80a1           2 KGRVVAILLND-EVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIAD   80 (156)
T ss_dssp             TTCEEEEECCT-TCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCTHHHHT
T ss_pred             CCcEEEEEeCC-CCCHHHHHHHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCchHHHhc
Confidence            45788888442 332    246778999999998875431              11222233479999999985431 13


Q ss_pred             chHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        84 ~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .....++|++. .+++||.+||.|.|+|+.+
T Consensus        81 ~~~~~~~i~e~~~~~K~I~aic~g~~~La~a  111 (156)
T d1p80a1          81 NGDANYYLMEAYKHLKPIALAGDARKFKATI  111 (156)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred             chHHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence            44567889884 8899999999999999876

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=98.62  E-value=2.8e-08  Score=69.72  Aligned_cols=90  Identities=13%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCcC--
Q 032797           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ--   82 (133)
Q Consensus        23 ~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~~--   82 (133)
                      ++.||+|+-+ ++|.    ..+.+.|++.|++++++.....              +..+.+..+||+++++||...+.  
T Consensus         2 ~~rkI~ilv~-dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~   80 (184)
T d1sy7a1           2 KSRRVAIIIA-DGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL   80 (184)
T ss_dssp             TTCEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred             CccEEEEEec-CCCcHHHHHHHHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeecccccccc
Confidence            3568888854 3442    2356788999999998854321              11222334799999999965443  


Q ss_pred             -CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           83 -DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        83 -d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                       ......++++++ ++++|+.+||.|.++|+.+
T Consensus        81 ~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~a  113 (184)
T d1sy7a1          81 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKA  113 (184)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             ccccchhHHHHHHHhcCCceEEechHHHHHHHc
Confidence             345567889885 7899999999999999985

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.3e-08  Score=68.78  Aligned_cols=88  Identities=16%  Similarity=0.121  Sum_probs=62.3

Q ss_pred             CeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCCC---------------CHHHHcc-CCCCEEEECCCCCCcC--
Q 032797           25 NPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDEL---------------TVEELKR-KNPRGVLISPGPGAPQ--   82 (133)
Q Consensus        25 ~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~~---------------~~~~l~~-~~~DgvIl~GG~~~~~--   82 (133)
                      +||+|+-+ ++|..    ...+.|++.|++++++..+..               +.++... .+||+++++||.+.+.  
T Consensus         2 Kkvlvll~-~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l   80 (186)
T d1p5fa_           2 KRALVILA-KGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL   80 (186)
T ss_dssp             CEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHH
T ss_pred             cEEEEEeC-CCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccc
Confidence            57887754 34422    356789999999988864311               1233332 3799999999965443  


Q ss_pred             -CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           83 -DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        83 -d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                       +.....++++++ ++++|+.+||.|.++|+.+
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAGPTALLAH  113 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             cchHHHHHHHHHhhccccceeecccCcchhhhc
Confidence             234567888885 7899999999999999985

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.56  E-value=4.7e-08  Score=69.61  Aligned_cols=88  Identities=14%  Similarity=0.191  Sum_probs=59.2

Q ss_pred             CeEEEE--ECCCCc-hHHHHHHHHh-CCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCC-cCCch
Q 032797           25 NPIIVI--DNYDSF-TYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGA-PQDSG   85 (133)
Q Consensus        25 ~~i~vi--d~~~~~-~~~i~~~l~~-~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~-~~d~~   85 (133)
                      .||+++  |....+ ...+...|++ .|+++.++..+..              +.+++...+||.||++||.+. .....
T Consensus         2 ~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~~~~~   81 (188)
T d2fexa1           2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA   81 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred             CEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCccccccccH
Confidence            467666  322222 3345677775 7999988765421              123343457999999998652 12233


Q ss_pred             HHHHHHHHh-CCCCCEEEEechHHHHHH
Q 032797           86 ISLQTVLEL-GPTVPLFGVCMGLQCIGE  112 (133)
Q Consensus        86 ~~~~~i~~~-~~~~PvLGIClG~QlLa~  112 (133)
                      ...++++++ ++++|+.+||-|..+|+.
T Consensus        82 ~l~~~lr~~~~~~~~i~aiC~g~~~La~  109 (188)
T d2fexa1          82 DLGGLVKRFRDRDRLVAGICAAASALGG  109 (188)
T ss_dssp             CCHHHHHHHHHTTCEEEEETHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCEEEEecchhHHHHH
Confidence            467888885 788999999999999987

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.55  E-value=6.5e-08  Score=70.58  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=54.0

Q ss_pred             HHHHHHhCCCeEEEEeCCCC---------------------------CHHHHccCCCCEEEECCCCCCcC---CchHHHH
Q 032797           40 LCQYMGELGYHFEVYRNDEL---------------------------TVEELKRKNPRGVLISPGPGAPQ---DSGISLQ   89 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~~~---------------------------~~~~l~~~~~DgvIl~GG~~~~~---d~~~~~~   89 (133)
                      ..+.|+++|+++++......                           ...++...+||+|+++||.+...   +...+.+
T Consensus        31 P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~  110 (221)
T d1u9ca_          31 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY  110 (221)
T ss_dssp             HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred             HHHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhhHHHHH
Confidence            56779999999998864210                           01222335799999999987433   3445667


Q ss_pred             HHHHh-CCCCCEEEEechHHHHHHH
Q 032797           90 TVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        90 ~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      +++.+ ++++|+.+||+|-++|+.+
T Consensus       111 li~~~~~~~k~iaAIChgp~~l~~a  135 (221)
T d1u9ca_         111 VLQQFAEDGRIIAAVCHGPSGLVNA  135 (221)
T ss_dssp             HHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHHHHhccCcceeecccceeeecc
Confidence            88875 7899999999999999863

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=5.3e-07  Score=66.40  Aligned_cols=47  Identities=15%  Similarity=0.116  Sum_probs=37.2

Q ss_pred             CCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797           67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        67 ~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a  113 (133)
                      .+||+|+++||.+...   +...+.++++++ ++++||-+||+|-++|+.+
T Consensus        96 ~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~  146 (236)
T d1qvwa_          96 DDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL  146 (236)
T ss_dssp             GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence            4799999999987433   333466788875 7899999999999988654

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=7.3e-07  Score=63.63  Aligned_cols=74  Identities=11%  Similarity=0.123  Sum_probs=54.1

Q ss_pred             HHHHHHhCCCeEEEEeCCC-----------------CCHHHHccCCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCC
Q 032797           40 LCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTV   98 (133)
Q Consensus        40 i~~~l~~~G~~~~v~~~~~-----------------~~~~~l~~~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~   98 (133)
                      ..+.|++.|++++++....                 .+.++....+||+|+++||.+.+.   +.....++++++ ++++
T Consensus        20 p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk   99 (195)
T d2ab0a1          20 TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGR   99 (195)
T ss_dssp             HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccHHHHHHHHHHhhccc
Confidence            5678999999998775321                 123445446899999999965432   344567888885 7899


Q ss_pred             CEEEEech-HHHHHHH
Q 032797           99 PLFGVCMG-LQCIGEA  113 (133)
Q Consensus        99 PvLGIClG-~QlLa~a  113 (133)
                      |+.+||.| ..+|+.+
T Consensus       100 ~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1         100 IVAAICAAPATVLVPH  115 (195)
T ss_dssp             EEEEETHHHHHHTTTT
T ss_pred             eeeeeeccchhhhhhc
Confidence            99999999 5888775

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=6.2e-06  Score=62.06  Aligned_cols=48  Identities=10%  Similarity=0.030  Sum_probs=38.4

Q ss_pred             CCCEEEECCCCCCcCCc---hHHHHHHHHh-CCCCCEEEEechHHHHHHHhC
Q 032797           68 NPRGVLISPGPGAPQDS---GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (133)
Q Consensus        68 ~~DgvIl~GG~~~~~d~---~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G  115 (133)
                      +||+|+++||.+...+.   ..+.++++.+ ++++||..||+|-..|..+-.
T Consensus       141 dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~  192 (279)
T d1n57a_         141 EYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRH  192 (279)
T ss_dssp             SEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTT
T ss_pred             cccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhccc
Confidence            79999999998855543   3456778775 789999999999999976643

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.99  E-value=0.0011  Score=48.53  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=55.5

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (133)
                      ||++++-..++....+.+.|++.+.+.+++...   .++++  ++|.+|.-||      ++.++..++.+...+|++||=
T Consensus         1 mr~~iv~k~d~~~k~i~e~l~~~~~~~~~~~~~---~~~~~--~~D~vi~iGG------DGT~L~a~~~~~~~~PilGIn   69 (249)
T d1z0sa1           1 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP---SEELE--NFDFIVSVGG------DGTILRILQKLKRCPPIFGIN   69 (249)
T ss_dssp             CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC---CGGGG--GSSEEEEEEC------HHHHHHHHTTCSSCCCEEEEE
T ss_pred             CeEEEEECCchhHHHHHHHHHhcCCeEEEecCc---ccccc--CCCEEEEECC------cHHHHHHHHHhcCCCcEEEEC
Confidence            689999877788888999999999999877432   23443  6899999998      444556666566678999999


Q ss_pred             chH
Q 032797          105 MGL  107 (133)
Q Consensus       105 lG~  107 (133)
                      .|.
T Consensus        70 ~G~   72 (249)
T d1z0sa1          70 TGR   72 (249)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            985

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.77  E-value=0.012  Score=37.66  Aligned_cols=78  Identities=12%  Similarity=0.231  Sum_probs=50.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      +||+|+|........+.+.|+..|+++..........+.+....||.+++-=.  -|...+ ++.+.+++....+|++-+
T Consensus         2 PkILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlvl~D~~--mP~~~G~el~~~ir~~~~~~piI~l   79 (121)
T d1ys7a2           2 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVCVL   79 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEEee--ccCcccHHHHHHHHhcCCCCEEEEE
Confidence            58999987555666788899999999876643211123344468998887211  232233 345667766667998876


Q ss_pred             e
Q 032797          104 C  104 (133)
Q Consensus       104 C  104 (133)
                      .
T Consensus        80 t   80 (121)
T d1ys7a2          80 S   80 (121)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.76  E-value=0.012  Score=37.52  Aligned_cols=80  Identities=13%  Similarity=0.161  Sum_probs=51.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      ++||+|+|-...+...+.+.|+..|+++..........+.+....||.+|+-=.  -|...+ .+.+.+++.....|++-
T Consensus         1 nirILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~--mp~~~g~~~~~~lr~~~~~~piI~   78 (122)
T d1kgsa2           1 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLM   78 (122)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcchHHHHHHHHhhCccccccccc--cccchhHHHHHHHHhcCCCCcEEE
Confidence            579999987555666788899999999887643211122334468998887321  233333 34566666556789887


Q ss_pred             Eec
Q 032797          103 VCM  105 (133)
Q Consensus       103 ICl  105 (133)
                      +.-
T Consensus        79 lt~   81 (122)
T d1kgsa2          79 LTA   81 (122)
T ss_dssp             EES
T ss_pred             EcC
Confidence            763

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.017  Score=37.43  Aligned_cols=96  Identities=24%  Similarity=0.270  Sum_probs=58.4

Q ss_pred             cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCC
Q 032797           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTV   98 (133)
Q Consensus        20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~   98 (133)
                      .-..+++|+|+|-.......+.+.|+..|+++..........+-+....||.+++--.  -|.-.+ .+.+.|++....+
T Consensus         4 ~~~~~~~ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~ea~~~~~~~~~dlillD~~--mP~~dG~el~~~ir~~~~~~   81 (133)
T d2ayxa1           4 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQLGLTL   81 (133)
T ss_dssp             CCCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHHHHCCS
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEECcHHHHHHHHhccCceEEEEecc--CCCCCHHHHHHHHHHhCCCC
Confidence            3456789999997555556688889999999876543211122233458998887222  233223 4566777755568


Q ss_pred             CEEEEech----HHHHHHHhCCe
Q 032797           99 PLFGVCMG----LQCIGEAFGDC  117 (133)
Q Consensus        99 PvLGIClG----~QlLa~a~GG~  117 (133)
                      |++.+.--    ...-+...|..
T Consensus        82 pii~lt~~~~~~~~~~~~~~G~~  104 (133)
T d2ayxa1          82 PVIGVTANALAEEKQRCLESGMD  104 (133)
T ss_dssp             CEEEEESSTTSHHHHHHHHCCCE
T ss_pred             CEEEEeccCCHHHHHHHHHcCCC
Confidence            99877542    12334455654

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.027  Score=35.77  Aligned_cols=91  Identities=11%  Similarity=0.133  Sum_probs=54.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      |||+|+|........+.+.|+..|+++..........+.+....||.+|+-=.  -|.-.+ ++.+.+++.....|++-+
T Consensus         1 mrILvVDDd~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~dliilD~~--mP~~~G~e~~~~i~~~~~~~pvi~l   78 (119)
T d2pl1a1           1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL   78 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcccceeehhcc--CCCchhHHHHHHHHhcCcccceEee
Confidence            68999987555666788889999998876543211122233458998887221  233333 244556655567899876


Q ss_pred             ec----hHHHHHHHhCCe
Q 032797          104 CM----GLQCIGEAFGDC  117 (133)
Q Consensus       104 Cl----G~QlLa~a~GG~  117 (133)
                      --    ....-+...|+.
T Consensus        79 t~~~~~~~~~~a~~~Ga~   96 (119)
T d2pl1a1          79 TARESWQDKVEVLSAGAD   96 (119)
T ss_dssp             ESCCCHHHHHHHHHTTCS
T ss_pred             eccCCHHHHHHHHHcCCC
Confidence            54    223334455654

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.021  Score=36.34  Aligned_cols=91  Identities=14%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH-HHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-SLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~-~~~~i~~~~~~~PvLG  102 (133)
                      .+||+|+|........+.+.|++.|+++..........+.+....||.+|+-=  .-|...+. +.+.+++ ..++|++.
T Consensus         2 tp~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~--~mp~~~G~~~~~~~r~-~~~~pii~   78 (121)
T d1xhfa1           2 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDI--NLPGKNGLLLARELRE-QANVALMF   78 (121)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECS--SCSSSCHHHHHHHHHH-HCCCEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHhcCCCEEEeec--ccCCccCcHHHHHHHh-cCCCcEEE
Confidence            46999998755566678899999999887654321112334446899888832  23333332 3344444 34699987


Q ss_pred             Eec--hH--HHHHHHhCCe
Q 032797          103 VCM--GL--QCIGEAFGDC  117 (133)
Q Consensus       103 ICl--G~--QlLa~a~GG~  117 (133)
                      +--  ..  ..-+..+|+.
T Consensus        79 lt~~~~~~~~~~a~~~Ga~   97 (121)
T d1xhfa1          79 LTGRDNEVDKILGLEIGAD   97 (121)
T ss_dssp             EESCCSHHHHHHHHHHTCS
T ss_pred             EECCCCHHHHHHHHHcCCC
Confidence            642  22  3334556654

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.94  E-value=0.027  Score=35.71  Aligned_cols=92  Identities=15%  Similarity=0.235  Sum_probs=53.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      +.||+|+|........+.+.|++.|+++..........+.+....||.+|+==.  -|...+ .....++......|++-
T Consensus         2 ~krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~--mp~~~G~~~~~~~r~~~~~~~ii~   79 (121)
T d1mvoa_           2 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPILM   79 (121)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcccccEEEeccc--ccCCCCchhhhhhhccCCCCEEEE
Confidence            468999986555566788899999999876543211122233458998887211  233333 23455665556688876


Q ss_pred             Eech----HHHHHHHhCCe
Q 032797          103 VCMG----LQCIGEAFGDC  117 (133)
Q Consensus       103 IClG----~QlLa~a~GG~  117 (133)
                      +.--    ...-+..+|+.
T Consensus        80 lt~~~~~~~~~~~~~~Ga~   98 (121)
T d1mvoa_          80 LTAKDEEFDKVLGLELGAD   98 (121)
T ss_dssp             EECTTCCCCHHHHHHTTCC
T ss_pred             EEeeCCHHHHHHHHHCCCC
Confidence            5421    13344455653

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.90  E-value=0.063  Score=34.06  Aligned_cols=79  Identities=19%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      ..+|+|+|-.......+.+.|+..|+++..........+.+....||.+|+==  .-|...+ ++.+.+++...+.|++-
T Consensus         3 k~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~--~mp~~~G~el~~~l~~~~~~~piI~   80 (123)
T d1krwa_           3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDI--RMPGMDGLALLKQIKQRHPMLPVII   80 (123)
T ss_dssp             CCEEEEESSSHHHHHHHHHHHHHTTCEEEEESSSHHHHHHHTTCCCSEEEECC--SSSSSTTHHHHHHHHHHSSSCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEehh--hcCCchHHHHHHHHHHhCCCCeEEE
Confidence            35799998755666678889999999988765421112334445899888721  1233333 34566666566799875


Q ss_pred             Ee
Q 032797          103 VC  104 (133)
Q Consensus       103 IC  104 (133)
                      +.
T Consensus        81 ~t   82 (123)
T d1krwa_          81 MT   82 (123)
T ss_dssp             SC
T ss_pred             Ee
Confidence            44

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=94.87  E-value=0.019  Score=36.63  Aligned_cols=80  Identities=11%  Similarity=0.014  Sum_probs=49.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc-cCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~-~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv  100 (133)
                      +++||+|+|........+.+.|+..|+++..........+.+. ...||.+|+--.  -|...+ ++.+.+|+...+.|+
T Consensus         1 qp~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dliilD~~--lp~~~G~el~~~ir~~~~~~pi   78 (118)
T d2b4aa1           1 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQTKQPSV   78 (118)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSSSCCEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHhcCCCeEEECCHHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCcE
Confidence            4689999997656667788899999999887654211122232 236898888221  222233 344555554467898


Q ss_pred             EEEe
Q 032797          101 FGVC  104 (133)
Q Consensus       101 LGIC  104 (133)
                      +-+-
T Consensus        79 i~lt   82 (118)
T d2b4aa1          79 LILT   82 (118)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.57  E-value=0.019  Score=37.30  Aligned_cols=78  Identities=21%  Similarity=0.227  Sum_probs=49.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      |||+|+|....+...+.+.|+..|+++..........+.+....||.+++-=  .-|...+ .+.+.+++...+.|++-+
T Consensus         1 mkILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvilD~--~mp~~~G~e~~~~lr~~~~~~piI~l   78 (137)
T d1ny5a1           1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDL--LLPDVNGLEILKWIKERSPETEVIVI   78 (137)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEES--BCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred             CEEEEEecCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHhhccccccchHHH--hhhhhhHHHHHHHHHHhCCCCCEEEE
Confidence            6899998755666678888999999887653311112223345899888721  1233333 345666666677998876


Q ss_pred             e
Q 032797          104 C  104 (133)
Q Consensus       104 C  104 (133)
                      -
T Consensus        79 T   79 (137)
T d1ny5a1          79 T   79 (137)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.057  Score=34.10  Aligned_cols=78  Identities=15%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF  101 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~PvL  101 (133)
                      +||+|+|........+...|+..|+++..........+.+....||.+|+-=.  -|...+ .+.+.+++.  ...+|++
T Consensus         1 KkILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlil~D~~--mp~~~G~~l~~~lr~~~~~~~~pvi   78 (121)
T d1zesa1           1 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWM--LPGGSGIQFIKHLKRESMTRDIPVV   78 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHSSSSCCSEEEECSS--CTTSCHHHHHHHHHHSTTTTTSCEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHccCCCEEEeecC--CCCCCHHHHHHHHHhCccCCCCeEE
Confidence            48999987555566788899999998876543111122233457998887321  233333 345667663  4679999


Q ss_pred             EEe
Q 032797          102 GVC  104 (133)
Q Consensus       102 GIC  104 (133)
                      -+.
T Consensus        79 ~lt   81 (121)
T d1zesa1          79 MLT   81 (121)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=94.49  E-value=0.031  Score=35.44  Aligned_cols=92  Identities=14%  Similarity=0.220  Sum_probs=55.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      +.||+|+|-.......+.+.|+..|+++..........+.+....||.+++--  .-|.-.+ ++.+.+++...+.|++-
T Consensus         1 NkrILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dlillD~--~mP~~~G~el~~~lr~~~~~~pvi~   78 (119)
T d1peya_           1 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDM--KIPGMDGIEILKRMKVIDENIRVII   78 (119)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEES--CCTTCCHHHHHHHHHHHCTTCEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCEEEEec--cCCCCCHHHHHHHHHHhCCCCcEEE
Confidence            45899998755556678888999999887654311112223334799888721  1233333 34566776667799888


Q ss_pred             Eec----hHHHHHHHhCCe
Q 032797          103 VCM----GLQCIGEAFGDC  117 (133)
Q Consensus       103 ICl----G~QlLa~a~GG~  117 (133)
                      +--    ....-+...|+.
T Consensus        79 lt~~~~~~~~~~a~~~Ga~   97 (119)
T d1peya_          79 MTAYGELDMIQESKELGAL   97 (119)
T ss_dssp             EESSCCHHHHHHHHHTTCC
T ss_pred             EecCCCHHHHHHHHHCCCC
Confidence            752    223334555664

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.40  E-value=0.045  Score=34.48  Aligned_cols=90  Identities=18%  Similarity=0.285  Sum_probs=53.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      +||+|+|........+.+.|++.|+++..........+.+....||.+++-=  .-|...+ ...+.+++ ...+|++.+
T Consensus         1 KrILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlillD~--~mp~~~G~~~~~~i~~-~~~~pvI~l   77 (117)
T d2a9pa1           1 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDL--MLPEIDGLEVAKTIRK-TSSVPILML   77 (117)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECS--SCSSSCHHHHHHHHHT-TCCCCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEecc--ccCCCCccHHHHHHHh-CCCCCEEEE
Confidence            4899998655556668888999999987654321112223345899888721  1233333 23344444 356999988


Q ss_pred             ech----HHHHHHHhCCe
Q 032797          104 CMG----LQCIGEAFGDC  117 (133)
Q Consensus       104 ClG----~QlLa~a~GG~  117 (133)
                      .--    ...-+...|+.
T Consensus        78 t~~~~~~~~~~a~~~Ga~   95 (117)
T d2a9pa1          78 SAKDSEFDKVIGLELGAD   95 (117)
T ss_dssp             ESCCSHHHHHHHHHHTCS
T ss_pred             ecCCCHHHHHHHHHcCCC
Confidence            653    23344555664

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=94.40  E-value=0.075  Score=33.70  Aligned_cols=79  Identities=13%  Similarity=0.151  Sum_probs=49.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      +.||+|+|-.......+.+.|+..|+++......+...+.+....+|.+|+ -= .-|.-.+ ++.+.+++...+.|++-
T Consensus         3 ~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~-D~-~mp~~~G~e~~~~lr~~~~~~~iI~   80 (123)
T d1dbwa_           3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVT-DL-RMPDMSGVELLRNLGDLKINIPSIV   80 (123)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEE-EC-CSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhcCCcEEEE-ec-cCccccchHHHHHHHhcCCCCeEEE
Confidence            569999997666667788999999998876533111112233457887776 11 1133333 34566776666789988


Q ss_pred             Ee
Q 032797          103 VC  104 (133)
Q Consensus       103 IC  104 (133)
                      +.
T Consensus        81 lt   82 (123)
T d1dbwa_          81 IT   82 (123)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.03  E-value=0.057  Score=40.01  Aligned_cols=77  Identities=14%  Similarity=0.266  Sum_probs=46.1

Q ss_pred             CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCCC-------HHH---------------HccCCCCEEEECCC
Q 032797           25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDELT-------VEE---------------LKRKNPRGVLISPG   77 (133)
Q Consensus        25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~~-------~~~---------------l~~~~~DgvIl~GG   77 (133)
                      .+|+|+-+.+.-     ...+.++|++.|+++.+.......       .++               -...++|.+|..||
T Consensus         1 r~v~lv~~~~k~~a~~~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGG   80 (302)
T d1u0ta_           1 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG   80 (302)
T ss_dssp             CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEEecchhcccccccCchhhhhcCcccccccccccccccccEEEEEcC
Confidence            367777554332     235778899999998765321100       000               01135788998898


Q ss_pred             CCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797           78 PGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (133)
Q Consensus        78 ~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~  107 (133)
                            ++.++..++.+ ..++|||||=.|.
T Consensus        81 ------DGT~L~a~~~~~~~~~PilGin~G~  105 (302)
T d1u0ta_          81 ------DGTFLRAAELARNASIPVLGVNLGR  105 (302)
T ss_dssp             ------HHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             ------ChHHHHHHHHhhccCCeEEEeCCCc
Confidence                  44456666665 4679999999984

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.00  E-value=0.011  Score=42.26  Aligned_cols=87  Identities=10%  Similarity=0.139  Sum_probs=55.4

Q ss_pred             CCCeEEEEEC------CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHH
Q 032797           23 NKNPIIVIDN------YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQT   90 (133)
Q Consensus        23 ~~~~i~vid~------~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~   90 (133)
                      ...||++|-.      ++.|.....+.++..|+++..+.......+.+.  +.|+|+++||.  +...-      .+.+.
T Consensus        30 ~~~~i~~IPtAs~~~~~~~y~~~~~~~~~~l~~~v~~l~~~~~~~~~l~--~ad~I~v~GGn--~~~l~~~l~~t~l~~~  105 (229)
T d1fyea_          30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGN--TFQLLKESRERGLLAP  105 (229)
T ss_dssp             TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEEGGGSSCHHHHHH--HCSEEEECCSC--HHHHHHHHHHTTCHHH
T ss_pred             CCCeEEEECCCCCCCchhHHHHHHHHHhhhcCceeEEecccccHHHHHh--hCCEEEEcCCC--HHHHHHHHHhCCHHHH
Confidence            3468999932      112344456677888998877654322233443  79999999983  22111      13456


Q ss_pred             HHH-hCCCCCEEEEechHHHHHHH
Q 032797           91 VLE-LGPTVPLFGVCMGLQCIGEA  113 (133)
Q Consensus        91 i~~-~~~~~PvLGIClG~QlLa~a  113 (133)
                      |++ +.++.++.|.--|+-++...
T Consensus       106 l~~~~~~G~vi~G~SAGA~v~~~~  129 (229)
T d1fyea_         106 MADRVKRGALYIGWSAGANLACPT  129 (229)
T ss_dssp             HHHHHHTTCEEEEETHHHHHTSSB
T ss_pred             HHHHHHcCCeEEEeChhHhhcCcc
Confidence            666 47899999999998777543

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=93.89  E-value=0.045  Score=34.65  Aligned_cols=91  Identities=14%  Similarity=0.134  Sum_probs=54.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF  101 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~PvL  101 (133)
                      .||+|+|........+.+.|+..|+++..........+.+....||.+++--  .-|...+ ++.+.|++.  ...+|++
T Consensus         2 krILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~--~mp~~dG~el~~~ir~~~~~~~iPii   79 (123)
T d1mb3a_           2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDI--QLPEISGLEVTKWLKEDDDLAHIPVV   79 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEES--BCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred             ceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEEe--ccCCCcHHHHHHHHHhCCCcCCCCeE
Confidence            5899998755556668888999999887653311112223334799888722  1233334 345677763  3688998


Q ss_pred             EEec----hHHHHHHHhCCe
Q 032797          102 GVCM----GLQCIGEAFGDC  117 (133)
Q Consensus       102 GICl----G~QlLa~a~GG~  117 (133)
                      .+.-    ..+.-+...|..
T Consensus        80 ~lt~~~~~~~~~~~~~~G~~   99 (123)
T d1mb3a_          80 AVTAFAMKGDEERIREGGCE   99 (123)
T ss_dssp             EEC------CHHHHHHHTCS
T ss_pred             EEEEecCHHHHHHHHHcCCC
Confidence            8863    233345556664

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.67  E-value=0.064  Score=36.72  Aligned_cols=34  Identities=6%  Similarity=0.061  Sum_probs=22.8

Q ss_pred             CCeEEEEEC-CCCchHHH----HHHHHhCCCeEEEEeCC
Q 032797           24 KNPIIVIDN-YDSFTYNL----CQYMGELGYHFEVYRND   57 (133)
Q Consensus        24 ~~~i~vid~-~~~~~~~i----~~~l~~~G~~~~v~~~~   57 (133)
                      +|||+||-+ ..+.+..+    .+.+++.|+++++++..
T Consensus         2 ~mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~   40 (201)
T d1ydga_           2 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR   40 (201)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CcEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEcc
Confidence            689999943 22444444    44566789999988754

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=93.31  E-value=0.085  Score=33.53  Aligned_cols=76  Identities=14%  Similarity=0.235  Sum_probs=46.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (133)
                      ++|+|+|....+...+.+.|+..|+++..........+.+....||.||+--.  -|...+ ...+.++......|+.-
T Consensus         3 P~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dliilD~~--mp~~~G~~~~~~i~~~~~~~~ii~   79 (128)
T d1yioa2           3 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPIVF   79 (128)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCccccccHHHHHHHHHhcCCCEeehhhh--cccchhHHHHHHHHhhCCCCeEEE
Confidence            48999987556667788899999998876543211112223457998877322  233333 34556666555677753

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Lipid kinase YegS
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.045  Score=39.60  Aligned_cols=76  Identities=17%  Similarity=0.194  Sum_probs=42.9

Q ss_pred             CeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCC-CHHH----HccCCCCEEEECCCCCCcCCchHHHHHHHHh-
Q 032797           25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-   94 (133)
Q Consensus        25 ~~i~vid~~~~~----~~~i~~~l~~~G~~~~v~~~~~~-~~~~----l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-   94 (133)
                      +|++||-|.-+-    .....+.|++.|+++++...... ...+    ....+||.||+.||-|+.+   +....+.+. 
T Consensus         1 p~~l~i~N~~s~~~~~~~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~---ev~~gl~~~~   77 (295)
T d2bona1           1 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTIN---EVSTALIQCE   77 (295)
T ss_dssp             CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHH---HHHHHHHHCC
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHHCCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEECCCcHHH---HHHHHHHhcc
Confidence            356666443322    13356678889999988865432 2222    2234799999999955321   112222222 


Q ss_pred             CCCCCEEEE
Q 032797           95 GPTVPLFGV  103 (133)
Q Consensus        95 ~~~~PvLGI  103 (133)
                      ...+|.+||
T Consensus        78 ~~~~p~lgi   86 (295)
T d2bona1          78 GDDIPALGI   86 (295)
T ss_dssp             SSCCCEEEE
T ss_pred             CCCCceEEE
Confidence            345677777

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.25  E-value=0.19  Score=34.27  Aligned_cols=77  Identities=16%  Similarity=0.088  Sum_probs=47.7

Q ss_pred             eEEEE-ECCCCchHHHHHHH----Hh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHh----
Q 032797           26 PIIVI-DNYDSFTYNLCQYM----GE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL----   94 (133)
Q Consensus        26 ~i~vi-d~~~~~~~~i~~~l----~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~----   94 (133)
                      +|+|| ....+.|..+.+.+    ++ .|+++++.+.++.+.+++.  .+|+||| |.|-.-. -...+..++.++    
T Consensus         3 kilivy~S~~G~T~~~A~~ia~g~~~~~g~~v~~~~~~~~~~~dl~--~~d~iii-GsPty~g~~~~~~~~fld~~~~~~   79 (184)
T d2arka1           3 KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLGDL   79 (184)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGGGT
T ss_pred             eEEEEEECCCcHHHHHHHHHHHhhhhccCceEEEeecccccccchh--hCcEEEE-ecCccccccCHHHHHHHHHHHHHH
Confidence            57666 33445566666654    44 5889998888777788886  6999999 6553211 123344555442    


Q ss_pred             ---CCCCCEEEEec
Q 032797           95 ---GPTVPLFGVCM  105 (133)
Q Consensus        95 ---~~~~PvLGICl  105 (133)
                         -+++|..+.+-
T Consensus        80 ~~~l~gK~~a~f~s   93 (184)
T d2arka1          80 WGEIDGKIACAFSS   93 (184)
T ss_dssp             TTSCTTCEEEEEEE
T ss_pred             HHHhCCeEEEEEEc
Confidence               15788766553

>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: ThuA-like
domain: GK2113 homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.22  E-value=0.41  Score=33.69  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             CCeEEEEECCCC--------------chHHHHHHHHhCCCeEEEEeCCC----CCHHHHccCCCCEEEECCCCC-CcCCc
Q 032797           24 KNPIIVIDNYDS--------------FTYNLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGPG-APQDS   84 (133)
Q Consensus        24 ~~~i~vid~~~~--------------~~~~i~~~l~~~G~~~~v~~~~~----~~~~~l~~~~~DgvIl~GG~~-~~~d~   84 (133)
                      ++||+|+.-+-.              .-..+...|++.|+++++...++    .+.+.+.  +||.||+.+-.+ ...+.
T Consensus         2 p~rvlv~~~~~He~~~~~v~~i~p~g~~~~ia~~l~~~g~~v~tat~~e~~~~~~~~~L~--~~Dvli~~~~~~~~~l~~   79 (240)
T d1t0ba_           2 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVKD   79 (240)
T ss_dssp             CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSCH
T ss_pred             CeEEEEECCccccccchhhhhhCcccHHHHHHHHhhcCCceEEEEEecCccccCCHHHHh--cCCEEEEeCCCCCCcCCH
Confidence            578888863211              11245667888999998754432    1334443  899999855322 22233


Q ss_pred             hHHHHHHHHhCCCCCEEEEechH
Q 032797           85 GISLQTVLELGPTVPLFGVCMGL  107 (133)
Q Consensus        85 ~~~~~~i~~~~~~~PvLGIClG~  107 (133)
                      .....+.+.+.++++++||=-++
T Consensus        80 ~q~~al~~~v~~G~G~VglH~a~  102 (240)
T d1t0ba_          80 EVVERVHRRVLEGMGLIVLHSGH  102 (240)
T ss_dssp             HHHHHHHHHHHTTCEEEEEGGGG
T ss_pred             HHHHHHHHHHHcCCCEEEEecCc
Confidence            33333344457889999985553

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=93.22  E-value=0.12  Score=33.27  Aligned_cols=91  Identities=15%  Similarity=0.159  Sum_probs=55.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF  101 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~PvL  101 (133)
                      -||+|+|-.......+...|+..|+++..........+.+....||.|++ . -.-|...+ .+.+.++..  ..++||+
T Consensus         2 arILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlil~-D-~~~p~~~G~~~~~~ir~~~~~~~~piI   79 (139)
T d1w25a1           2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILL-D-VMMPGMDGFTVCRKLKDDPTTRHIPVV   79 (139)
T ss_dssp             CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEE-E-SCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEEccchhhhhhhhcccceeeee-e-ccccCCCchHHHHHhhhcccccCCCEE
Confidence            48999987666677788899999998876543211122233347997776 2 12233333 345667763  4689999


Q ss_pred             EEe----chHHHHHHHhCCe
Q 032797          102 GVC----MGLQCIGEAFGDC  117 (133)
Q Consensus       102 GIC----lG~QlLa~a~GG~  117 (133)
                      -+-    .....-+...|+.
T Consensus        80 ~lt~~~~~~~~~~a~~~Ga~   99 (139)
T d1w25a1          80 LITALDGRGDRIQGLESGAS   99 (139)
T ss_dssp             EEECSSCHHHHHHHHHHTCC
T ss_pred             EEEcCCCHHHHHHHHHcCCC
Confidence            886    2333345556764

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=93.15  E-value=0.071  Score=33.59  Aligned_cols=79  Identities=15%  Similarity=0.299  Sum_probs=48.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (133)
                      +.||+|+|-.......+.+.|++.|+++...-.+.. ..+.+....||.+++-  -.-|...+ +..+.+++...+.|++
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD--~~mp~~~G~e~~~~ir~~~~~~pvi   78 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMD--ITMPEMNGIDAIKEIMKIDPNAKII   78 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEE--CSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEEEe--cCCCCCCHHHHHHHHHHhCCCCcEE
Confidence            468999986544556678889999998753322211 1222334579988882  12233333 3456666666779988


Q ss_pred             EEe
Q 032797          102 GVC  104 (133)
Q Consensus       102 GIC  104 (133)
                      -+-
T Consensus        79 ~ls   81 (118)
T d1u0sy_          79 VCS   81 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=93.07  E-value=0.099  Score=33.86  Aligned_cols=78  Identities=17%  Similarity=0.274  Sum_probs=49.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      ++|+|+|-.......+.+.|+..|+.+..........+.+....+|.||+ - -.-|...+ .+.+.+++...++|++-+
T Consensus         1 P~ILiVDDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlil~-D-~~mP~~~G~el~~~lr~~~~~~pvI~l   78 (140)
T d1qkka_           1 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVIS-D-IRMPGMDGLALFRKILALDPDLPMILV   78 (140)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEE-E-SCCSSSCHHHHHHHHHHHCTTSCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCChHHHHHHHhccCcchHHH-h-hccCCCCHHHHHHHHHHhCCCCcEEEE
Confidence            57999986555566788889999998877642111112223357997776 2 12233333 345667766678999988


Q ss_pred             e
Q 032797          104 C  104 (133)
Q Consensus       104 C  104 (133)
                      -
T Consensus        79 T   79 (140)
T d1qkka_          79 T   79 (140)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.81  E-value=0.032  Score=35.23  Aligned_cols=91  Identities=18%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH-HHHHHHHhCCCCCEEE
Q 032797           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-SLQTVLELGPTVPLFG  102 (133)
Q Consensus        24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~-~~~~i~~~~~~~PvLG  102 (133)
                      ++||+|+|........+...|++.|+++..........+.+....||.+++-=.  -|...+. ..+.++. ....|++-
T Consensus         1 P~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~dliilD~~--mp~~~g~~~~~~~~~-~~~~piI~   77 (120)
T d1zgza1           1 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RSTVGIIL   77 (120)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCCCEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEeeehh--hccchhHHHHHHHhc-cCCCeEEE
Confidence            468999997656666788899999998876643211122233458998887221  2222222 2233333 45689888


Q ss_pred             Eec----hHHHHHHHhCCe
Q 032797          103 VCM----GLQCIGEAFGDC  117 (133)
Q Consensus       103 ICl----G~QlLa~a~GG~  117 (133)
                      +.-    ..+.-+..+|+.
T Consensus        78 lt~~~~~~~~~~a~~~Ga~   96 (120)
T d1zgza1          78 VTGRSDRIDRIVGLEMGAD   96 (120)
T ss_dssp             EESSCCHHHHHHHHHHTCS
T ss_pred             EEccCCHHHHHHHHHCCCC
Confidence            763    233345556664

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=92.34  E-value=0.8  Score=29.23  Aligned_cols=80  Identities=10%  Similarity=0.042  Sum_probs=45.2

Q ss_pred             CCeEEEE-ECCCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCCCcC-CchHHHHHHHH--
Q 032797           24 KNPIIVI-DNYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQ-DSGISLQTVLE--   93 (133)
Q Consensus        24 ~~~i~vi-d~~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~~~~-d~~~~~~~i~~--   93 (133)
                      ..||+|| ....+.+..+.+    .|.+.|+++++++....+.++..  ..++|++|+ |+|-.-. .......++..  
T Consensus         2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~~~~l~~~d~vi~-Gspt~~~~~~~~~~~~l~~~~   80 (152)
T d1e5da1           2 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIV-GSPTHNNGILPYVAGTLQYIK   80 (152)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEE-ECCCBTTBCCHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhhccchhhCCEEEE-eccccCCccCchhHHHHHHhh
Confidence            4577777 344455665544    45668999999887544443321  137999999 5543211 12233344433  


Q ss_pred             -h-CCCCCEEEEe
Q 032797           94 -L-GPTVPLFGVC  104 (133)
Q Consensus        94 -~-~~~~PvLGIC  104 (133)
                       . ..++++...+
T Consensus        81 ~~~~~~k~~~~fg   93 (152)
T d1e5da1          81 GLRPQNKIGGAFG   93 (152)
T ss_dssp             HTCCCSCEEEEEE
T ss_pred             ccCCCCCEEEEEE
Confidence             2 3567775554

>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.26  E-value=0.16  Score=34.04  Aligned_cols=52  Identities=23%  Similarity=0.273  Sum_probs=33.1

Q ss_pred             CeEEEEEC-CCCchHHHHH----HHHhCCCeEEEEeCCC-------------------CCHHHHccCCCCEEEECCCCC
Q 032797           25 NPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPG   79 (133)
Q Consensus        25 ~~i~vid~-~~~~~~~i~~----~l~~~G~~~~v~~~~~-------------------~~~~~l~~~~~DgvIl~GG~~   79 (133)
                      +||+||-+ ..+.+..+.+    -+++.|+++++++..+                   ...+++.  .+|+||| |+|-
T Consensus         2 ~Kvliiy~S~~GnT~~la~~i~~g~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~D~ii~-gsP~   77 (196)
T d2a5la1           2 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GSPT   77 (196)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EEEC
T ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCEEEEEeccccchHHHHhccccccccccccchhhhh--hcCEEEE-ecch
Confidence            58888843 2344555444    4566899999887532                   1244454  7999999 6553

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=91.98  E-value=0.3  Score=31.32  Aligned_cols=80  Identities=13%  Similarity=0.128  Sum_probs=44.7

Q ss_pred             CCeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcC-CchHH---HHHHH
Q 032797           24 KNPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ-DSGIS---LQTVL   92 (133)
Q Consensus        24 ~~~i~vi-d~~~~~~~~i~----~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~-d~~~~---~~~i~   92 (133)
                      ..|++|| ....+++..+.    +.+++.|.++++++....+.+++..  .++|+||+ |.|-.-. -...+   ++.+.
T Consensus         2 k~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspt~~g~~~~~~~~~l~~l~   80 (149)
T d1ycga1           2 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLV-GSPTINNDILPVVSPLLDDLV   80 (149)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEE-ECCCBTTBCCGGGHHHHHHHH
T ss_pred             CcEEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHHHhhhhhhCCeEEE-EeecccCCCCHHHHHHHHHHh
Confidence            3577777 33345565554    4556689999998765455555421  36999998 6553111 11223   33344


Q ss_pred             Hh-CCCCCEEEEe
Q 032797           93 EL-GPTVPLFGVC  104 (133)
Q Consensus        93 ~~-~~~~PvLGIC  104 (133)
                      .. ..++|+..+|
T Consensus        81 ~~~~~~k~~~~fg   93 (149)
T d1ycga1          81 GLRPKNKVGLAFG   93 (149)
T ss_dssp             HHCCSSCEEEEEE
T ss_pred             ccccCCCEEEEEe
Confidence            33 3566665553

>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Positive regulator of the amidase operon AmiR
domain: Positive regulator of the amidase operon AmiR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.40  E-value=0.2  Score=33.36  Aligned_cols=78  Identities=9%  Similarity=0.014  Sum_probs=49.3

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 032797           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (133)
                      ...+++|+|+|-.......+...|+..|+++.......   +.+ ...||.+++ .= .-|...+.....++.....+||
T Consensus         8 ~l~~~~iLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~---~al-~~~~Dlvl~-D~-~mp~~~~~~~~~~~~~~p~~pv   81 (189)
T d1qo0d_           8 SLRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPP---EAF-DVPVDVVFT-SI-FQNRHHDEIAALLAAGTPRTTL   81 (189)
T ss_dssp             TGGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCC---SSC-SSCCSEEEE-EC-CSSTHHHHHHHHHHHSCTTCEE
T ss_pred             hccCCEEEEEeCCHHHHHHHHHHHHHcCCcceecCCHH---Hhc-cCCCCEEEE-cC-CCCCcHHHHHHHHHHcCCCCCE
Confidence            35568999998777777788899999999998775421   222 247998776 21 1222222223333444567888


Q ss_pred             EEEe
Q 032797          101 FGVC  104 (133)
Q Consensus       101 LGIC  104 (133)
                      +.+=
T Consensus        82 I~lt   85 (189)
T d1qo0d_          82 VALV   85 (189)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7763

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.03  E-value=0.13  Score=33.08  Aligned_cols=93  Identities=12%  Similarity=0.065  Sum_probs=50.9

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHH-h----C
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLE-L----G   95 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~-~----~   95 (133)
                      ..++||+|+|-.......+.+.|+..|++++.........+ .....||.+++-=  .-|.-.+ +..+.|++ .    .
T Consensus         5 ~~g~rILvVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~-~l~~~~dlillD~--~mP~~dG~el~~~ir~~~~~~~~   81 (134)
T d1dcfa_           5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLR-VVSHEHKVVFMDV--CMPGVENYQIALRIHEKFTKQRH   81 (134)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHH-HCCTTCSEEEEEC--CSSTTTTTHHHHHHHHHHC-CCS
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH-HhhcCCCeEEEEe--ccCCCchHHHHHHHHHhcccccC
Confidence            46789999985434445577889999999887643211122 2234799887711  1233333 34456664 2    1


Q ss_pred             CCCCEEEEe-c---hHHHHHHHhCCe
Q 032797           96 PTVPLFGVC-M---GLQCIGEAFGDC  117 (133)
Q Consensus        96 ~~~PvLGIC-l---G~QlLa~a~GG~  117 (133)
                      ...|++.+= .   ....-+...|..
T Consensus        82 ~~~~ii~lT~~~~~~~~~~~~~~G~~  107 (134)
T d1dcfa_          82 QRPLLVALSGNTDKSTKEKCMSFGLD  107 (134)
T ss_dssp             CCCEEEEEESCCSHHHHHHHHHTTCC
T ss_pred             CCCeEEEEeCCCCHHHHHHHHHcCCC
Confidence            335566542 1   223334456654

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.64  E-value=0.46  Score=31.19  Aligned_cols=57  Identities=18%  Similarity=0.085  Sum_probs=33.7

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc----c--CCCCEEEECCCCCCcCCchHHHHHH
Q 032797           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTV   91 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~--~~~DgvIl~GG~~~~~d~~~~~~~i   91 (133)
                      +++...+..+|++.|+++.....-..+.+.+.    .  .++|.||.+||.+ +.+.+...+.+
T Consensus        26 dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliittGG~s-~g~~D~~~~~l   88 (155)
T d2ftsa3          26 DSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVS-MGEKDYLKQVL   88 (155)
T ss_dssp             CCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCS-SSCCHHHHHHH
T ss_pred             echHHHHHHHhcccccceEEEEEecCchhHHHHHHHHhhcccCEEEEecccc-CCcchhhHHHH
Confidence            35566788999999998765432111233321    1  3689999999964 34444433444

>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Escherichia coli [TaxId: 562]

Probab=89.36  E-value=0.52  Score=31.47  Aligned_cols=65  Identities=17%  Similarity=0.189  Sum_probs=38.5

Q ss_pred             cCCCCCeEEEEECCC-------CchHHHHHHHHhCCCeEEEEe--CCCCC-H-HH----HccCCCCEEEECCCCC-CcCC
Q 032797           20 SKNNKNPIIVIDNYD-------SFTYNLCQYMGELGYHFEVYR--NDELT-V-EE----LKRKNPRGVLISPGPG-APQD   83 (133)
Q Consensus        20 ~~~~~~~i~vid~~~-------~~~~~i~~~l~~~G~~~~v~~--~~~~~-~-~~----l~~~~~DgvIl~GG~~-~~~d   83 (133)
                      .+..+.||+||--.|       .....+...|++.|+++....  .|+.. . ..    ....++|.||.+||-+ +++|
T Consensus         4 ~~f~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd~~~~~~~l~~~~~~~~~dlIiTtGGtg~g~~D   83 (170)
T d1mkza_           4 TEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGD   83 (170)
T ss_dssp             SSCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTC
T ss_pred             CCcCCceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeCCCHHHHHHHHHhhhhcccceEEEEeeeecccccc
Confidence            346678888883322       223357888999999875322  22111 1 11    1234789999999977 4555


Q ss_pred             c
Q 032797           84 S   84 (133)
Q Consensus        84 ~   84 (133)
                      .
T Consensus        84 ~   84 (170)
T d1mkza_          84 Q   84 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

Probab=89.23  E-value=0.62  Score=29.33  Aligned_cols=49  Identities=14%  Similarity=0.173  Sum_probs=32.8

Q ss_pred             EEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCC
Q 032797           27 IIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP   78 (133)
Q Consensus        27 i~vi-d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~   78 (133)
                      |.|+ ....+++..    +.+.|++.|+++++++..+.+.+++.  ++|++|+ |.|
T Consensus         2 V~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~ii~-g~p   55 (137)
T d2fz5a1           2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCP   55 (137)
T ss_dssp             EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECC
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHhcCCceEEeehhhHHHhhhh--ccceEEE-EEe
Confidence            4444 333345554    44556678999999987766777776  7999988 443

>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=0.38  Score=31.62  Aligned_cols=58  Identities=12%  Similarity=0.062  Sum_probs=35.1

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cCCCCEEEECCCCCCcCCchHHHHHHH
Q 032797           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVL   92 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~~~~d~~~~~~~i~   92 (133)
                      +++...+...+++.|+++..+..-..+.+++.      ..++|.||.+||.+ +.+.+...+.++
T Consensus        26 dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DivittGG~s-~g~~D~~~~~l~   89 (149)
T d2nqra3          26 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS-VGEADYTKTILE   89 (149)
T ss_dssp             CCHHHHHHHHHHHTTCEEEEEEEECSSHHHHHHHHHHHHHHCSEEEECSSSC-SSSCSHHHHHHH
T ss_pred             ecchHHHHhhhhhcceEEEEccccCChHHHHHHHHHhcccccCEEEEcCCcc-CCchHHHHHHHH
Confidence            45666788889999998875542111233321      12699999999964 344443334444

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.03  E-value=0.086  Score=33.16  Aligned_cols=90  Identities=11%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (133)
                      ++|+|+|-.......+.+.|+..|+++..........+.+....||.+|+-=  .-|.-.+ ++.+.+++ ....|++-+
T Consensus         1 TnILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dliilD~--~mP~~~G~e~~~~ir~-~~~~piI~l   77 (119)
T d1zh2a1           1 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDL--GLPDGDGIEFIRDLRQ-WSAVPVIVL   77 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEES--EETTEEHHHHHHHHHT-TCCCCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEecc--ccCCCCCchHHHHHHh-ccCCcEEEE
Confidence            4799998765666678889999999887654321112223345899888711  1122222 23455554 346899888


Q ss_pred             ec----hHHHHHHHhCCe
Q 032797          104 CM----GLQCIGEAFGDC  117 (133)
Q Consensus       104 Cl----G~QlLa~a~GG~  117 (133)
                      +-    ....-+...|+.
T Consensus        78 t~~~~~~~~~~a~~~Ga~   95 (119)
T d1zh2a1          78 SARSEESDKIAALDAGAD   95 (119)
T ss_dssp             ESCCSHHHHHHHHHHTCS
T ss_pred             eccCCHHHHHHHHHcCCC
Confidence            76    234445556664

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=88.67  E-value=1.1  Score=26.46  Aligned_cols=74  Identities=11%  Similarity=0.117  Sum_probs=45.3

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHH--------------ccCCCCEEEECCCCCCcCCch
Q 032797           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEEL--------------KRKNPRGVLISPGPGAPQDSG   85 (133)
Q Consensus        22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~--~~~~l--------------~~~~~DgvIl~GG~~~~~d~~   85 (133)
                      ..+.+|+|+-.+-+ -.+..++|.+.|+++.+......  ..+.+              ...++|.+|+|+|-  |.+..
T Consensus         3 ~~~K~v~ViGlG~s-G~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi--~~~~~   79 (93)
T d2jfga1           3 YQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGI--ALAHP   79 (93)
T ss_dssp             CTTCCEEEECCSHH-HHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTS--CTTSH
T ss_pred             cCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCC--CCCCH
Confidence            45678999977433 23678899999999988754211  01110              01268999999984  22222


Q ss_pred             HHHHHHHHh-CCCCCEEE
Q 032797           86 ISLQTVLEL-GPTVPLFG  102 (133)
Q Consensus        86 ~~~~~i~~~-~~~~PvLG  102 (133)
                          ++.++ ++++||.|
T Consensus        80 ----~~~~a~~~gi~iiG   93 (93)
T d2jfga1          80 ----SLSAAADAGIEIVG   93 (93)
T ss_dssp             ----HHHHHHHTTCEEEC
T ss_pred             ----HHHHHHHcCCCeEC
Confidence                33332 56789876

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=88.50  E-value=0.088  Score=33.59  Aligned_cols=95  Identities=16%  Similarity=0.168  Sum_probs=52.5

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CC
Q 032797           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GP   96 (133)
Q Consensus        21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~   96 (133)
                      ...++||+|+|........+.+.|++.|+. +......+...+-+....||.+|+--.  -|.-.+ ++.+.+|+.  ..
T Consensus         3 ~~~~~kILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~~~~dlii~D~~--mP~~~G~el~~~lr~~~~~~   80 (129)
T d1p6qa_           3 LAEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANPATK   80 (129)
T ss_dssp             CSSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCTTST
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhCCCCeEEeeee--cCCCChHHHHHHHHhCcccC
Confidence            345679999986444455677889999985 332211100122233457997777221  243334 345566652  46


Q ss_pred             CCCEEEEec----hHHHHHHHhCCe
Q 032797           97 TVPLFGVCM----GLQCIGEAFGDC  117 (133)
Q Consensus        97 ~~PvLGICl----G~QlLa~a~GG~  117 (133)
                      +.|++-+.-    ....-+...|+.
T Consensus        81 ~~pii~lt~~~~~~~~~~a~~~G~~  105 (129)
T d1p6qa_          81 KAAFIILTAQGDRALVQKAAALGAN  105 (129)
T ss_dssp             TCEEEECCSCCCHHHHHHHHHHTCS
T ss_pred             CCeEEEEEecCCHHHHHHHHHCCCC
Confidence            788887662    122334455664

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.57  E-value=0.73  Score=29.54  Aligned_cols=52  Identities=13%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCC
Q 032797           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPG   77 (133)
Q Consensus        23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG   77 (133)
                      ..|||+|.|.   ......+.|++.|...........+.+++..  .++|++++.+.
T Consensus         3 ~kmKILv~d~---i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~   56 (132)
T d1sc6a2           3 DKIKFLLVEG---VHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSR   56 (132)
T ss_dssp             SSCCEEECSC---CCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSS
T ss_pred             CCCEEEEECC---CCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecc
Confidence            4589999985   3445667899998764433333245555432  48999998654

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.38  E-value=2.6  Score=26.52  Aligned_cols=55  Identities=20%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             CCCeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCCC---HHHHc--cCCCCEEEECCCC
Q 032797           23 NKNPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDELT---VEELK--RKNPRGVLISPGP   78 (133)
Q Consensus        23 ~~~~i~vi-d~~~~~~~~i~----~~l~~~G~~~~v~~~~~~~---~~~l~--~~~~DgvIl~GG~   78 (133)
                      ...||+|+ ....+.+..+.    +.|.+.|++++++.....+   ..++.  -.++|++++ |.|
T Consensus         2 ~~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iii-gsp   66 (148)
T d1vmea1           2 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVS   66 (148)
T ss_dssp             CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EEC
T ss_pred             CCCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEE-Eec
Confidence            34577777 44445666555    4556689999887643222   22221  137999999 543

>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Bacillus cereus [TaxId: 1396]

Probab=86.34  E-value=0.83  Score=29.73  Aligned_cols=46  Identities=24%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             hHHHHHHHHhCCCeEEEEe--CCCCCHHH----Hc----cCCCCEEEECCCCC-CcCCc
Q 032797           37 TYNLCQYMGELGYHFEVYR--NDELTVEE----LK----RKNPRGVLISPGPG-APQDS   84 (133)
Q Consensus        37 ~~~i~~~l~~~G~~~~v~~--~~~~~~~~----l~----~~~~DgvIl~GG~~-~~~d~   84 (133)
                      ...+..+|++.|+++....  .|  +.+.    +.    ...+|.||.+||-+ .++|.
T Consensus        22 gp~L~~~l~~~G~~v~~~~iv~D--~~~~i~~~l~~~~~~~~~DlIvTtGGts~g~~D~   78 (155)
T d1y5ea1          22 GQLLHELLKEAGHKVTSYEIVKD--DKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDV   78 (155)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEECS--SHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTCC
T ss_pred             HHHHHHHHHhcCCEEEEeeeecc--hHHHHHHHHHHHHhccCCCEEEEeeeeecccccc
Confidence            3458889999999876442  22  2222    11    24689999999976 34443

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.69  E-value=2.2  Score=30.26  Aligned_cols=57  Identities=14%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             CCeEEEEECCC---Cc-h---HHHHHHHHhCCCeEEEEeCCCCC-HH----HHccCCCCEEEECCCCCC
Q 032797           24 KNPIIVIDNYD---SF-T---YNLCQYMGELGYHFEVYRNDELT-VE----ELKRKNPRGVLISPGPGA   80 (133)
Q Consensus        24 ~~~i~vid~~~---~~-~---~~i~~~l~~~G~~~~v~~~~~~~-~~----~l~~~~~DgvIl~GG~~~   80 (133)
                      .+|+.||-|.-   .. .   ..+.+.|.+.|.+++++...... ..    +....++|.||+.||-|+
T Consensus         2 ~kr~~vi~NP~SG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGT   70 (312)
T d2qv7a1           2 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGT   70 (312)
T ss_dssp             CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHH
T ss_pred             CceEEEEECcCCCCCcHHHHHHHHHHHHHHCCCeEEEEEcCCccHHHHHHHHHHHcCCCEEEEEcCCcH
Confidence            45787776522   22 1   23556677789999888764321 22    223347999999999553

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=85.26  E-value=2.6  Score=25.43  Aligned_cols=76  Identities=21%  Similarity=0.177  Sum_probs=46.0

Q ss_pred             CCeEEEEECCCCchH--------HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhC
Q 032797           24 KNPIIVIDNYDSFTY--------NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG   95 (133)
Q Consensus        24 ~~~i~vid~~~~~~~--------~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~   95 (133)
                      ..||+|+--+.|-.+        .+.+.|++.|+++..+..+......+...++|.++. -=.|.+.+++....++..+.
T Consensus         2 ~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~~~~~~~~~~~d~vF~-~lHG~~GEdG~iQ~~le~l~   80 (96)
T d1iowa1           2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI-ALHGRGGEDGTLQGMLELMG   80 (96)
T ss_dssp             CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEE-CCCSTTTSSSHHHHHHHHHT
T ss_pred             CceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccccchhhhccCceeEEE-eccCcchhccHHHHHHHHcC
Confidence            458998865555433        356778889999988876544444554457886664 22334456666544454443


Q ss_pred             CCCCEEE
Q 032797           96 PTVPLFG  102 (133)
Q Consensus        96 ~~~PvLG  102 (133)
                        +|.-|
T Consensus        81 --IPytG   85 (96)
T d1iowa1          81 --LPYTG   85 (96)
T ss_dssp             --CCBSS
T ss_pred             --CCccC
Confidence              66543

>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Pyrococcus horikoshii, PH1647 [TaxId: 53953]

Probab=85.23  E-value=0.4  Score=31.33  Aligned_cols=46  Identities=15%  Similarity=0.030  Sum_probs=26.5

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cCCCCEEEECCCCC
Q 032797           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG   79 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~   79 (133)
                      |++...+...+++.|+++.....-..+.+.+.      ..++|.||.+||.+
T Consensus        30 dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~DlvIttGG~s   81 (144)
T d1wu2a3          30 ETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA   81 (144)
T ss_dssp             CCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred             ecCchHHhhhhcccCcceeEEEEecchHHHHHHHHHHhhhcccEEEEccccc
Confidence            45555688889999998865532111233322      13799999999965

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=85.19  E-value=1  Score=29.16  Aligned_cols=95  Identities=8%  Similarity=0.043  Sum_probs=53.0

Q ss_pred             ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--C
Q 032797           19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--G   95 (133)
Q Consensus        19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~   95 (133)
                      .+...+.||+|+|-.......+.+.|+..|+.+  +........-.....||.|++ -= .-|.-.+ .+.+.||..  .
T Consensus         8 ~~~~~~~rILiVDD~~~~~~~l~~~L~~~g~~v--~~~~~~~~~~~~~~~~Dlill-D~-~mP~~dG~el~~~ir~~~~~   83 (153)
T d1w25a2           8 RLDGLGGRVLIVDDNERQAQRVAAELGVEHRPV--IESDPEKAKISAGGPVDLVIV-NA-AAKNFDGLRFTAALRSEERT   83 (153)
T ss_dssp             CCSSCSCEEEEECSCHHHHHHHHHHHTTTSEEE--EECCHHHHHHHHHSSCSEEEE-ET-TCSSSCHHHHHHHHHTSGGG
T ss_pred             cccCCCCeEEEEeCCHHHHHHHHHHHHHCCCEE--EEccHHHHHHHhcCCCCEEEE-EC-ccccccchHHHHHHHhcccc
Confidence            445667899999864444556778888888754  333211111123357998887 11 1233233 345666653  3


Q ss_pred             CCCCEEEEech----HHHHHHHhCCe
Q 032797           96 PTVPLFGVCMG----LQCIGEAFGDC  117 (133)
Q Consensus        96 ~~~PvLGIClG----~QlLa~a~GG~  117 (133)
                      .++|++-+.--    ...-+...|+.
T Consensus        84 ~~iPiI~lt~~~~~~~~~~a~~~Ga~  109 (153)
T d1w25a2          84 RQLPVLAMVDPDDRGRMVKALEIGVN  109 (153)
T ss_dssp             TTCCEEEEECTTCHHHHHHHHHTTCC
T ss_pred             ccceeEEeecCCCHHHHHHHHhcCcc
Confidence            67999877632    22234455664

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.81  E-value=1.3  Score=27.73  Aligned_cols=77  Identities=17%  Similarity=0.290  Sum_probs=45.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHH-----ccCCCCEEEECCCCCCcCCch-HHHHHHHH-hCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEEL-----KRKNPRGVLISPGPGAPQDSG-ISLQTVLE-LGP   96 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l-----~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~-~~~   96 (133)
                      +||+|+|-.......+.+.|+..|++ ++....-....+.+     ....||.+++=-.  -|.-.+ +..+.+|+ ...
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~--mP~~dG~el~~~ir~~~~~   79 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ--MPKVDGLLSTKMIRRDLGY   79 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC--CSSSCHHHHHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCeEEEEEcChHHHHHHHHhhhhccCCCCEEEEEeC--CCCCCHHHHHHHHHHccCC
Confidence            68999986545556678889999986 55443210011111     1247998887221  233333 35567765 456


Q ss_pred             CCCEEEE
Q 032797           97 TVPLFGV  103 (133)
Q Consensus        97 ~~PvLGI  103 (133)
                      ..|++-+
T Consensus        80 ~~piI~l   86 (128)
T d2r25b1          80 TSPIVAL   86 (128)
T ss_dssp             CSCEEEE
T ss_pred             CCeEEEE
Confidence            7898754

>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]

Probab=83.84  E-value=0.53  Score=30.74  Aligned_cols=46  Identities=28%  Similarity=0.198  Sum_probs=28.1

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cCCCCEEEECCCCC
Q 032797           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG   79 (133)
Q Consensus        34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~   79 (133)
                      +++...+...|++.|+++.....-..+.+.+.      ..++|.||.+||.+
T Consensus        26 dsn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DliIttGG~s   77 (148)
T d1uz5a3          26 DINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGAS   77 (148)
T ss_dssp             CCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-
T ss_pred             eCChHHHHHhhhcccccceeeeeeccHHHHHHHHHHhhhccccEEEECCCcc
Confidence            34555688889999998754432111233321      12689999999964

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=83.19  E-value=0.85  Score=30.61  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             CCCCCeEEEE----ECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCCCCcC-CchHHHHHH
Q 032797           21 KNNKNPIIVI----DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTV   91 (133)
Q Consensus        21 ~~~~~~i~vi----d~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~~~~~-d~~~~~~~i   91 (133)
                      .+.++||++-    |..+.-...+...|+..|+++.....+ .+.+++-    ..++|.|.+|.-.+... ....+.+.+
T Consensus        34 ~gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~-~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L  112 (168)
T d7reqa2          34 EGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLF-QTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKEL  112 (168)
T ss_dssp             HSSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTT-BCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHH
T ss_pred             hCCCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCc-CcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHH
Confidence            3556788777    322222445778899999998766554 4566542    34899999985432211 122344555


Q ss_pred             HHhC-CCCCEEEEech
Q 032797           92 LELG-PTVPLFGVCMG  106 (133)
Q Consensus        92 ~~~~-~~~PvLGIClG  106 (133)
                      ++.. .++||+  |-|
T Consensus       113 ~~~g~~~v~Vi--vGG  126 (168)
T d7reqa2         113 DKLGRPDILIT--VGG  126 (168)
T ss_dssp             HHTTCTTSEEE--EEE
T ss_pred             HhcCCCCeEEE--EeC
Confidence            5542 445554  444

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=82.35  E-value=3.4  Score=28.12  Aligned_cols=55  Identities=15%  Similarity=0.097  Sum_probs=32.4

Q ss_pred             CCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797           23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG   77 (133)
Q Consensus        23 ~~~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG   77 (133)
                      ...||.+|-.  ...|-.    .+.++.++.|+++.++.+.+.+.+       .+...++|+||+.+.
T Consensus         2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~   69 (316)
T d1tjya_           2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV   69 (316)
T ss_dssp             CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCeeeeccc
Confidence            4568887732  223322    355667778999877533222322       122358999999775

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=82.30  E-value=1.4  Score=27.70  Aligned_cols=52  Identities=15%  Similarity=0.053  Sum_probs=30.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc-cCCCCEEEECCC
Q 032797           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLISPG   77 (133)
Q Consensus        25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~-~~~~DgvIl~GG   77 (133)
                      |||++.+-.+.....+.++.++.++++...+.. .+.+... ..++|+|++.+.
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~ii~~~~   53 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF-LDENTVEWAKGFDGINSLQT   53 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC-CCTTGGGGGTTCSEEEECCS
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCC-CCHHHHHHhcCCCEEEEecC
Confidence            678776544444445666667778887765432 1211111 248999998654

>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: STM3548-like
domain: Putative cytoplasmic protein STM3548
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.05  E-value=1  Score=31.63  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=27.6

Q ss_pred             HHHHHHHHhCCCeEEEEeCCC------CCHHHHccCCCCEEEECCC
Q 032797           38 YNLCQYMGELGYHFEVYRNDE------LTVEELKRKNPRGVLISPG   77 (133)
Q Consensus        38 ~~i~~~l~~~G~~~~v~~~~~------~~~~~l~~~~~DgvIl~GG   77 (133)
                      ..+.++|+..|++++..+.+.      .+.+++.  +||.|||+.-
T Consensus        33 ~~l~~aL~~~~~~v~~~~~~~~~~~fP~~~~~l~--~yDvvIl~D~   76 (246)
T d2gk3a1          33 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDI   76 (246)
T ss_dssp             HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESC
T ss_pred             HHHHHHHHhCCceEEEecchhhhhhCccCHHHHh--cCCEEEEecC
Confidence            357889999999999876421      2345554  7999999654

>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: L-arabinose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=81.39  E-value=2.4  Score=29.23  Aligned_cols=74  Identities=12%  Similarity=0.153  Sum_probs=42.4

Q ss_pred             CeEEEEECCCC--chHH----HHHHHHhCCCeEEEEeCCCCC-----HHHHccCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797           25 NPIIVIDNYDS--FTYN----LCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE   93 (133)
Q Consensus        25 ~~i~vid~~~~--~~~~----i~~~l~~~G~~~~v~~~~~~~-----~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~   93 (133)
                      .||.++-....  |-..    +.++.++.|+++.+....+..     .+.+...++||||+.+-     +.....+.+++
T Consensus         2 ~kIg~v~~~~~~p~~~~~~~g~~~aa~~~G~~~i~~~~~d~~~q~~~i~~li~~~vDgiIi~~~-----~~~~~~~~~~~   76 (305)
T d8abpa_           2 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTP-----DPKLGSAIVAK   76 (305)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECS-----CGGGHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHcCCCEEEEccc-----cccccHHHHHH
Confidence            47777744333  3222    445566789998766543211     11222458999999653     22223345555


Q ss_pred             h-CCCCCEEEE
Q 032797           94 L-GPTVPLFGV  103 (133)
Q Consensus        94 ~-~~~~PvLGI  103 (133)
                      + +.++||.-+
T Consensus        77 a~~~giPVV~~   87 (305)
T d8abpa_          77 ARGYDMKVIAV   87 (305)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHhcCCCEEEE
Confidence            4 678999886

>d1ehsa_ g.2.1.1 (A:) Heat-stable enterotoxin B {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Toxic hairpin
superfamily: Heat-stable enterotoxin B
family: Heat-stable enterotoxin B
domain: Heat-stable enterotoxin B
species: Escherichia coli [TaxId: 562]

Probab=80.14  E-value=0.1  Score=27.31  Aligned_cols=16  Identities=38%  Similarity=0.586  Sum_probs=13.2

Q ss_pred             EEEEechHHHHHHHhC
Q 032797          100 LFGVCMGLQCIGEAFG  115 (133)
Q Consensus       100 vLGIClG~QlLa~a~G  115 (133)
                      ..|-|+|.|+|..+-|
T Consensus        32 tagacfgaqimvaakg   47 (48)
T d1ehsa_          32 TAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SCCTTTTTHHHHTTTT
T ss_pred             ccccccchhHhhhccc
Confidence            4688999999987765