Citrus Sinensis ID: 032813

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYELKKRKKVWVRFDPLFF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEcccccccccccccccccHHHHHHHHcccccccccccEEccccccccccccccEEEcccccEEEcEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccHHEEcHHHcccccccccccccEEEccEEEEEEccccccccccccccEEEEEccHHEEEEcccccccccccccEEEEEEEEEcHHHHHHHHHHccccccHHHHHHHHccccEEcccEEEEEEcccccc
Coil and Loop (DISEMBL)
MTEAGPVLSMClgfakqpfptksgscgtvvrnaelkvidpeigaslphnqpgeicirgpqiMKVAELefwsdgghdeeIIKLNRltmgsslgwaskaqaepgrwAFDLALRTRAGYELKKRKKVWVRFDPLFF
Flexible Loop (DISEMBL)
MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEigaslphnqpGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAgyelkkrkkvwvrfdplff
Low Complexity Region (SEG)
MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYELKKRKKVWVRFDPLFF
Disordered region (IsUnstruct)
*******LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYELKKRKKVWVRFDPLF*
Disordered Region (DISOPRED)
MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYELKKRKKVWVRFDPLFF
Disordered Region (DISEMBL)
MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYELKKRKKVWVRFDPLFF
Disordered Region (DISPRO)
****GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYELKKRKKVWVRFDPLFF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYELKKRKKVWVRFDPLFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
P31687	562	4-coumarate--CoA ligase 2	no	no	0.473	0.112	0.888	3e-27
Q6ZAC1	539	Probable 4-coumarate--CoA	yes	no	0.473	0.116	0.793	3e-25
P31684	545	4-coumarate--CoA ligase 1	N/A	no	0.473	0.115	0.777	6e-25
P31685	545	4-coumarate--CoA ligase 2	N/A	no	0.473	0.115	0.777	6e-25
O24540	553	4-coumarate--CoA ligase O	N/A	no	0.473	0.113	0.777	6e-25
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.473	0.115	0.777	6e-25
Q9S725	556	4-coumarate--CoA ligase 2	no	no	0.473	0.113	0.777	7e-25
Q42524	561	4-coumarate--CoA ligase 1	no	no	0.473	0.112	0.777	2e-24
P41636	537	4-coumarate--CoA ligase O	N/A	no	0.473	0.117	0.777	2e-24
Q9S777	561	4-coumarate--CoA ligase 3	no	no	0.473	0.112	0.809	6e-24

>sp|P31687|4CL2_SOYBN 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCLGFAKQPF TKSGSCGTVVRNAELKV+DPE G SL +NQPGEICIRG Q
Sbjct: 353 MTEAGPVLSMCLGFAKQPFQTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQ 412

Query: 61  IMK 63
           IMK
Sbjct: 413 IMK 415

Glycine max (taxid: 3847)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|Q6ZAC1|4CL5_ORYSJ Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 56/63 (88%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMC+ FAK+P P KSG+CGTVVRNAELK++DP+ G SLP NQPGEICIRG Q
Sbjct: 331 MTEAGPVLSMCMAFAKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQPGEICIRGKQ 390

Query: 61  IMK 63
           IMK
Sbjct: 391 IMK 393

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31684|4CL1_SOLTU 4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 56/63 (88%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+ G SLP NQPGEICIRG Q
Sbjct: 338 MTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQ 397

Query: 61  IMK 63
           IMK
Sbjct: 398 IMK 400

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31685|4CL2_SOLTU 4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 56/63 (88%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+ G SLP NQPGEICIRG Q
Sbjct: 338 MTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQ 397

Query: 61  IMK 63
           IMK
Sbjct: 398 IMK 400

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24540|4CL_VANPL 4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 56/63 (88%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DPE G+SLP N PGEICIRG Q
Sbjct: 344 MTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPETGSSLPRNHPGEICIRGDQ 403

Query: 61  IMK 63
           IMK
Sbjct: 404 IMK 406

Vanilla planifolia (taxid: 51239)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 56/63 (88%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+ G SLP NQPGEICIRG Q
Sbjct: 340 MTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQ 399

Query: 61  IMK 63
           IMK
Sbjct: 400 IMK 402

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 57/63 (90%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+ G SLP N+PGEICIRG Q
Sbjct: 349 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQ 408

Query: 61  IMK 63
           IMK
Sbjct: 409 IMK 411

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q42524|4CL1_ARATH 4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 56/63 (88%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+ G SL  NQPGEICIRG Q
Sbjct: 356 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQ 415

Query: 61  IMK 63
           IMK
Sbjct: 416 IMK 418

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P41636|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 55/63 (87%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+M L FAK PFP KSGSCGTVVRNA++K++D E G SLPHNQ GEICIRGP+
Sbjct: 335 MTEAGPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPE 394

Query: 61  IMK 63
           IMK
Sbjct: 395 IMK 397

Pinus taeda (taxid: 3352)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/63 (80%), Positives = 54/63 (85%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSM LGFAK+P PTKSGSCGTVVRNAELKV+  E   SL +NQPGEICIRG Q
Sbjct: 359 MTEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQ 418

Query: 61  IMK 63
           IMK
Sbjct: 419 IMK 421

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
425856886	565	4-coumarate:CoA ligase [Cunninghamia lan	0.473	0.111	0.873	3e-28
255557999	573	AMP dependent CoA ligase, putative [Rici	0.473	0.109	0.936	2e-27
268528133	574	4-coumarate:CoA ligase 2 [Gossypium hirs	0.639	0.148	0.637	9e-27
253509565	573	4-coumarate:CoA ligase 1 [Gossypium hirs	0.473	0.109	0.920	1e-26
315419007	574	4CL [Gossypium hirsutum]	0.473	0.109	0.920	2e-26
351723189	570	4-coumarate:CoA ligase isoenzyme 3 [Glyc	0.473	0.110	0.888	3e-26
387316078	491	4-coumarate: coenzyme A ligase, partial	0.473	0.128	0.809	3e-26
371534669	570	Coumaroyl-CoA ligase [Vitis vinifera]	0.473	0.110	0.904	4e-26
381356182	565	4-coumarate-CoA ligase [Cinnamomum osmop	0.473	0.111	0.904	4e-26
379061385	569	4-coumarate: coenzyme A ligase 2 [Populu	0.473	0.110	0.888	9e-26

>gi|425856886|gb|AFX98059.1| 4-coumarate:CoA ligase [Cunninghamia lanceolata]

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/63 (87%), Positives = 61/63 (96%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCLGFAK+PFPTKSGSCGTVVRNA++K+IDPE G SLP+N+PGEICIRGPQ
Sbjct: 357 MTEAGPVLSMCLGFAKEPFPTKSGSCGTVVRNAQMKIIDPETGESLPYNKPGEICIRGPQ 416

Query: 61  IMK 63
           IMK
Sbjct: 417 IMK 419

Source: Cunninghamia lanceolata

Species: Cunninghamia lanceolata

Genus: Cunninghamia

Family: Cupressaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557999|ref|XP_002520028.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223540792|gb|EEF42352.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/63 (93%), Positives = 60/63 (95%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPE G SL +NQPGEICIRGPQ
Sbjct: 365 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGCSLGYNQPGEICIRGPQ 424

Query: 61  IMK 63
           IMK
Sbjct: 425 IMK 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268528133|gb|ACZ06243.1| 4-coumarate:CoA ligase 2 [Gossypium hirsutum]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 72/102 (70%), Gaps = 17/102 (16%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPE G SL +NQPGEICIRG Q
Sbjct: 363 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGCSLGYNQPGEICIRGSQ 422

Query: 61  IMK-----------VAELEFWSDGG------HDEEIIKLNRL 85
           IMK             ++E W   G       D+EI  ++R+
Sbjct: 423 IMKGYLNDSVATAATTDVEGWLHTGDIGYVDEDDEIFIVDRV 464

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|253509565|gb|ACT32027.1| 4-coumarate:CoA ligase 1 [Gossypium hirsutum]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 59/63 (93%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPE G SL +NQPGEICIRG Q
Sbjct: 362 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGCSLGYNQPGEICIRGSQ 421

Query: 61  IMK 63
           IMK
Sbjct: 422 IMK 424

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315419007|gb|ADU15550.1| 4CL [Gossypium hirsutum]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 59/63 (93%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPE G SL +NQPGEICIRG Q
Sbjct: 363 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGCSLGYNQPGEICIRGSQ 422

Query: 61  IMK 63
           IMK
Sbjct: 423 IMK 425

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723189|ref|NP_001237270.1| 4-coumarate:CoA ligase isoenzyme 3 [Glycine max] gi|4038971|gb|AAC97389.1| 4-coumarate:CoA ligase isoenzyme 3 [Glycine max] gi|4038973|gb|AAC97599.1| 4-coumarate:CoA ligase isoenzyme 3 [Glycine max]

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 59/63 (93%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAEL+V+DPE G SL +NQPGEICIRG Q
Sbjct: 361 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELRVVDPETGRSLGYNQPGEICIRGQQ 420

Query: 61  IMK 63
           IMK
Sbjct: 421 IMK 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387316078|gb|AFJ73431.1| 4-coumarate: coenzyme A ligase, partial [Metasequoia glyptostroboides]

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/63 (80%), Positives = 59/63 (93%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCL FAK+PFPTKSGSCGTVVRNA++K++DP+ G SLP+N+PGEICIRG Q
Sbjct: 291 MTEAGPVLSMCLAFAKEPFPTKSGSCGTVVRNAQMKIVDPDTGESLPYNKPGEICIRGSQ 350

Query: 61  IMK 63
           IMK
Sbjct: 351 IMK 353

Source: Metasequoia glyptostroboides

Species: Metasequoia glyptostroboides

Genus: Metasequoia

Family: Cupressaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|371534669|gb|AEX32786.1| Coumaroyl-CoA ligase [Vitis vinifera]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 58/63 (92%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKV+DPE G SL  NQPGEICIRG Q
Sbjct: 361 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQ 420

Query: 61  IMK 63
           IMK
Sbjct: 421 IMK 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381356182|gb|AFG26324.1| 4-coumarate-CoA ligase [Cinnamomum osmophloeum]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 59/63 (93%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCLGFA+Q FPTKSGSCGTVVRNAELKVIDPE G SL +NQPGEICIRGPQ
Sbjct: 358 MTEAGPVLSMCLGFARQAFPTKSGSCGTVVRNAELKVIDPETGFSLQYNQPGEICIRGPQ 417

Query: 61  IMK 63
           IMK
Sbjct: 418 IMK 420

Source: Cinnamomum osmophloeum

Species: Cinnamomum osmophloeum

Genus: Cinnamomum

Family: Lauraceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379061385|gb|AFC89538.1| 4-coumarate: coenzyme A ligase 2 [Populus tomentosa]

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVLSMCL F+KQPFPTKSGSCGTVVRNAELKVIDPE G SL +NQPGEICIRG Q
Sbjct: 361 MTEAGPVLSMCLAFSKQPFPTKSGSCGTVVRNAELKVIDPETGGSLGYNQPGEICIRGSQ 420

Query: 61  IMK 63
           IMK
Sbjct: 421 IMK 423

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.473	0.113	0.777	8e-23
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.473	0.112	0.777	1.7e-22
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.473	0.112	0.809	2.7e-21
TAIR|locus:2094771	570	4CL5 "4-coumarate:CoA ligase 5	0.466	0.108	0.650	7.9e-17
UNIPROTKB|Q5LVA1	535	fadD "4-coumarate:CoA ligase"	0.315	0.078	0.476	2e-06
TIGR_CMR|SPO_0801	535	SPO_0801 "4-coumarate:CoA liga	0.315	0.078	0.476	2e-06
UNIPROTKB|P69451	561	fadD [Escherichia coli K-12 (t	0.578	0.137	0.344	5.8e-06
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.443	0.104	0.421	7.5e-06
UNIPROTKB|E1BS15	589	ACSF2 "Uncharacterized protein	0.548	0.123	0.329	1.3e-05
UNIPROTKB|E1BVI3	593	ACSF2 "Uncharacterized protein	0.548	0.123	0.329	1.3e-05

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 8.0e-23, P = 8.0e-23
 Identities = 49/63 (77%), Positives = 57/63 (90%)

Query:     1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
             MTEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+ G SLP N+PGEICIRG Q
Sbjct:   349 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQ 408

Query:    61 IMK 63
             IMK
Sbjct:   409 IMK 411

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 49/63 (77%), Positives = 56/63 (88%)

Query:     1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
             MTEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+ G SL  NQPGEICIRG Q
Sbjct:   356 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQ 415

Query:    61 IMK 63
             IMK
Sbjct:   416 IMK 418

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 51/63 (80%), Positives = 54/63 (85%)

Query:     1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
             MTEAGPVLSM LGFAK+P PTKSGSCGTVVRNAELKV+  E   SL +NQPGEICIRG Q
Sbjct:   359 MTEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQ 418

Query:    61 IMK 63
             IMK
Sbjct:   419 IMK 421

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 7.9e-17, P = 7.9e-17
 Identities = 41/63 (65%), Positives = 50/63 (79%)

Query:     1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
             MTE+G V +  L FAK PF TKSG+CGTV+RNAE+KV+D E G SLP N+ GEIC+RG Q
Sbjct:   364 MTESGTV-AKSLAFAKNPFKTKSGACGTVIRNAEMKVVDTETGISLPRNKSGEICVRGHQ 422

Query:    61 IMK 63
             +MK
Sbjct:   423 LMK 425

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009699 "phenylpropanoid biosynthetic process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

UNIPROTKB|Q5LVA1 fadD "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 119 (46.9 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query:    22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
             K G+ G  + N E ++IDPE G  LP  + GE+ +RGPQ+MK
Sbjct:   350 KPGASGVAISNTECRIIDPETGTDLPLGEDGELWVRGPQVMK 391

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TIGR_CMR|SPO_0801 SPO_0801 "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 119 (46.9 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query:    22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
             K G+ G  + N E ++IDPE G  LP  + GE+ +RGPQ+MK
Sbjct:   350 KPGASGVAISNTECRIIDPETGTDLPLGEDGELWVRGPQVMK 391

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

UNIPROTKB|P69451 fadD [Escherichia coli K-12 (taxid:83333)]

 Score = 115 (45.5 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 31/90 (34%), Positives = 47/90 (52%)

Query:     1 MTEAGPVLSMCLGFAKQPFPTK--SGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG 58
             +TE  P++S+       P+     SGS G  V + E K++D +    +P  QPGE+C++G
Sbjct:   359 LTECAPLVSV------NPYDIDYHSGSIGLPVPSTEAKLVDDDDN-EVPPGQPGELCVKG 411

Query:    59 PQIMKVAELEFWSDGGHDEEIIKLNRLTMG 88
             PQ+M    L +W      +EIIK   L  G
Sbjct:   412 PQVM----LGYWQRPDATDEIIKNGWLHTG 437

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;IDA;IMP

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0008654 "phospholipid biosynthetic process" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0005504 "fatty acid binding" evidence=IMP

GO:0070538 "oleic acid binding" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;IDA;IMP

GO:0005829 "cytosol" evidence=TAS

GO:0009898 "internal side of plasma membrane" evidence=TAS

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query:     1 MTEA-GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP 59
             +TE+ GP  S    F  +    K GS G +  N E K++DP  G SLP  + GE+ +RGP
Sbjct:   356 LTESSGPAAST---FGPEEM-VKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGP 411

Query:    60 QIMK 63
              IMK
Sbjct:   412 VIMK 415

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

UNIPROTKB|E1BS15 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 26/79 (32%), Positives = 41/79 (51%)

Query:     2 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQI 61
             TE  PV  M  GF       ++ + G+++ + E K+ DPE    +P N PGE+ +RG  +
Sbjct:   385 TENSPVTFM--GFPTDDITRRTETVGSILPHTEAKIEDPETRKPVPLNTPGELQVRGYCV 442

Query:    62 MKVAELEFWSDGGHDEEII 80
             M    L +W+D     E+I
Sbjct:   443 M----LGYWNDSARTREVI 457

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BVI3 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 26/79 (32%), Positives = 41/79 (51%)

Query:     2 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQI 61
             TE  PV  M  GF       ++ + G+++ + E K+ DPE    +P N PGE+ +RG  +
Sbjct:   385 TENSPVTFM--GFPTDDITRRTETVGSILPHTEAKIEDPETRKPVPLNTPGELQVRGYCV 442

Query:    62 MKVAELEFWSDGGHDEEII 80
             M    L +W+D     E+I
Sbjct:   443 M----LGYWNDSARTREVI 457

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ZAC1	4CL5_ORYSJ	6, ., 2, ., 1, ., 1, 2	0.7936	0.4736	0.1168	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4CL	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (378 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024561001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (717 aa)						•	•		0.944
	GSVIVG00023211001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (710 aa)						•	•		0.944
	GSVIVG00018175001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (723 aa)						•	•		0.944
	GSVIVG00016492001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (797 aa)						•	•		0.944
	GSVIVG00016489001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (766 aa)						•	•		0.944
	GSVIVG00013947001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (710 aa)						•	•		0.944
	GSVIVG00013943001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (710 aa)						•	•		0.944
	GSVIVG00013939001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (710 aa)						•	•		0.944
	gVvPAL1	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (502 aa)						•	•		0.944
	GSVIVG00013928001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (710 aa)						•	•		0.944

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-46
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	5e-25
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-17
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-13
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-12
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	7e-12
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-11
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	6e-11
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-10
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	4e-10
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	6e-10
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	9e-10
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	7e-09
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	3e-08
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	5e-08
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	5e-08
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	6e-08
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-08
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-07
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-06
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	4e-06
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	4e-06
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	4e-06
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-06
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	6e-06
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	7e-06
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	9e-06
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	2e-05
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	4e-05
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-05
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-05
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	5e-05
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-04
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-04
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-04
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-04
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	3e-04
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	4e-04
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	7e-04
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	0.001
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	0.001
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	0.001
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	0.002
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	0.003
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.004
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	0.004
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	0.004
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.004
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	0.004

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  157 bits (399), Expect = 1e-46
 Identities = 55/63 (87%), Positives = 59/63 (93%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+MCL FAK+PFP KSGSCGTVVRNAELK++DPE GASLP NQPGEICIRGPQ
Sbjct: 333 MTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQ 392

Query: 61  IMK 63
           IMK
Sbjct: 393 IMK 395

Length = 537

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 98.1 bits (245), Expect = 5e-25
 Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 3/63 (4%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE+ PV +MC    K P   K GS G +V N E K++DPE G SLP NQPGE+ +RGPQ
Sbjct: 310 MTESSPVTTMCPVPEKDP---KPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQ 366

Query: 61  IMK 63
           +MK
Sbjct: 367 VMK 369

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 76.1 bits (188), Expect = 3e-17
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE GP  ++     ++P     GS G +V N E K++D + G SL  N+ GE+C++GPQ
Sbjct: 298 MTETGPATTLTPPGDEKP-----GSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQ 352

Query: 61  IMK 63
           IMK
Sbjct: 353 IMK 355

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 65.2 bits (160), Expect = 1e-13
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE   V +   G    P+  + G+ G  +   E+K++DP+ G  +P  + GEIC+RG  
Sbjct: 152 MTETSGVGTQTSGDD--PYEDRPGTVGRPLPGVEVKIVDPD-GGEVPPGEVGEICVRGYS 208

Query: 61  IMK 63
           +MK
Sbjct: 209 VMK 211

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 62.9 bits (154), Expect = 1e-12
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE  PV +            K GS G  +   E+K++D E G  LP  + GE+ +RGPQ
Sbjct: 276 LTETSPVTT----VNPLDGERKPGSIGLPLPGTEVKIVDDE-GNELPPGEVGELVVRGPQ 330

Query: 61  IMK 63
           +MK
Sbjct: 331 VMK 333

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
            TE   V +  L         K GS G  +   E+KV+D E G  +P  + GE+CIRGP 
Sbjct: 282 PTETTVVATANLPGDP---EVKPGSIGRPLPGVEVKVLDEE-GEPVPPGEVGELCIRGPG 337

Query: 61  IMK 63
           + +
Sbjct: 338 VAR 340

Length = 412

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 59.8 bits (146), Expect = 1e-11
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE GP  ++    + + +  K GS G  V   E++++D + G  LP  + GEI +RGP 
Sbjct: 149 MTETGPTTTLL---SPEDWLRKLGSVGRPVPGVEVRIVDED-GRELPPGEVGEIVVRGPA 204

Query: 61  IMK 63
           +M 
Sbjct: 205 VMA 207

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE   V S            K G+ G  V   E++V+D E G  LP  + GE+ +RGP 
Sbjct: 150 LTETSVVTSTNPDSE----LKKPGTVGRPVPGVEVRVVDEE-GKPLPPGEVGELVVRGPW 204

Query: 61  IMK 63
           +MK
Sbjct: 205 VMK 207

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 1   MTEAGPVLSMC-LGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP 59
           ++EA  V +   L        T +G+ GT +   E K+++ E+G  +P  + GE+ +RGP
Sbjct: 316 LSEASGVTTFNRLD---DDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGP 371

Query: 60  QIMK 63
            +MK
Sbjct: 372 NVMK 375

Length = 513

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE  PV+++           K GS G  +   E++++DP+ G  LP  + GEI +RGP 
Sbjct: 326 LTETSPVVTINPPDDLL---AKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPN 381

Query: 61  IMKVAELEFWSDGGHDEEIIK 81
           +MK     +W+      E   
Sbjct: 382 VMK----GYWNRPEATAEAFD 398

Length = 534

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 18  PFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
           P   K    G  V   + +VIDPE G  LP  + GEI +RGPQ+ K
Sbjct: 245 PDRPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFK 290

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 54.8 bits (133), Expect = 9e-10
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE  PV          P   +  + G  + + E+K++DPE G ++P  + GE+C RG  
Sbjct: 350 MTETSPV--STQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYS 407

Query: 61  IMK 63
           +MK
Sbjct: 408 VMK 410

Length = 559

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 13/83 (15%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTK--SGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG 58
           +TE  P++S+       P+     SGS G  V + E+K++D + G  +P  +PGE+ ++G
Sbjct: 359 LTECSPLVSVN------PYDLDYYSGSIGLPVPSTEIKLVDDD-GNEVPPGEPGELWVKG 411

Query: 59  PQIMKVAELEFWSDGGHDEEIIK 81
           PQ+M      +W      +E+IK
Sbjct: 412 PQVML----GYWQRPEATDEVIK 430

Length = 560

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 22  KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
           K  S G ++ N E+K IDP+ G SLP N PGE+C+R   +M+
Sbjct: 359 KKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQ 400

Length = 546

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE  PV+S+    A Q      G+ G  V +   KVID + G  LP  + GE+C++GPQ
Sbjct: 360 MTETSPVVSVNPSQAIQV-----GTIGIPVPSTLCKVIDDD-GNELPLGEVGELCVKGPQ 413

Query: 61  IMK 63
           +MK
Sbjct: 414 VMK 416

Length = 562

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 2   TEAGPVLS------MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEIC 55
           TE  PV S      +   F +Q   +K GS G  +    ++++DPE    LP  + G I 
Sbjct: 933 TETSPVASVNLPDVLAADFKRQTG-SKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLIL 991

Query: 56  IRGPQIMK 63
           I GPQ+MK
Sbjct: 992 IGGPQVMK 999

Length = 1146

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.4 bits (119), Expect = 6e-08
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 1   MTEAGPVLSMCLGFAKQ--PFPTKSGSCGTVVRNAELKVIDPEIGASLPHN--QPGEICI 56
           MTE  PV+S  L    Q     TK  S G  +   E +++D + G  LP +  + GEI +
Sbjct: 315 MTETSPVVS-VLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDD-GDELPPDGGEVGEIIV 372

Query: 57  RGPQIMK 63
           RGP +M+
Sbjct: 373 RGPWLMQ 379

Length = 521

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 2   TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQI 61
           TE  PV+S        P   K G+ G  +   E++++ PE    LP  + G + +RGP +
Sbjct: 294 TECSPVIS-----VNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNV 348

Query: 62  MK 63
           M 
Sbjct: 349 MS 350

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKS--GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG 58
           +TE  PV S        P+   +  G+ G  V    LKVID + G  LP  + GE+CI+G
Sbjct: 367 LTETSPVAS------TNPYGELARLGTVGIPVPGTALKVIDDD-GNELPLGERGELCIKG 419

Query: 59  PQIMK 63
           PQ+MK
Sbjct: 420 PQVMK 424

Length = 562

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 23  SGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
           SG+ G  + + E+ + D + G  LP  +PGEICIRGPQ+M
Sbjct: 379 SGTIGLPLPSTEVSIRDDD-GNDLPLGEPGEICIRGPQVM 417

Length = 557

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE  P + M    +++    K GS G  V   + ++ID      +   + GE+ IRGP 
Sbjct: 297 MTETSPTVFM---LSEEDARRKVGSIGKPVLFCDYELIDEN-KNKVEVGEVGELLIRGPN 352

Query: 61  IMKVAELEFWSDGGHDEEIIK 81
           +MK    E+W+     EE I+
Sbjct: 353 VMK----EYWNRPDATEETIQ 369

Length = 496

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 44.4 bits (106), Expect = 4e-06
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 16/63 (25%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE   V ++      +P   + G+ G  +   E++ I  +          GEI +RGP 
Sbjct: 248 LTETSGVATV-----NRPGDIRIGTVGKPLPGVEVR-IAED----------GEILVRGPN 291

Query: 61  IMK 63
           +MK
Sbjct: 292 VMK 294

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE   V    +G    P   ++ + G  V   E++++D + G  +P  + GE+ +RGPQ
Sbjct: 242 MTEVPLV---TVGTPDDPDDKRAATDGRPVPGVEVRIVDDD-GNDVPPGEEGELQVRGPQ 297

Query: 61  IM 62
           + 
Sbjct: 298 LF 299

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE  PV       A      +  + G    + E+KV+DP+ GA++P  + GE+C RG  
Sbjct: 352 MTETSPVSL--QTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYS 408

Query: 61  IMK 63
           +MK
Sbjct: 409 VMK 411

Length = 558

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 25  SCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
           SCG  +   E++++DPE    LP  + GEI +RGP + 
Sbjct: 356 SCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVA 393

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 36  KVIDPEIGASLPHNQPGEICIRGPQIMK 63
           +VIDPE    LP  + GEI + GPQ+ K
Sbjct: 369 RVIDPETLEELPPGEVGEIVVHGPQVFK 396

Length = 546

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 2   TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQI 61
           TE  P L+  LG  +     + GS G  V N E +V+D + G  +   + GEI  R PQ+
Sbjct: 322 TEIAP-LATVLGPEEHL--RRPGSAGRPVLNVETRVVDDD-GNDVAPGEVGEIVHRSPQL 377

Query: 62  MKVAELEFWSD 72
           M    L +W D
Sbjct: 378 M----LGYWDD 384

Length = 523

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 1   MTE--AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID-PEIG-ASLPHNQPGEICI 56
           +TE  AG  LS        P  T +G  G  +   E+K++D PE+G  +      GEICI
Sbjct: 303 LTETCAGGTLSD-------PGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICI 355

Query: 57  RGPQIMK 63
           RGP + K
Sbjct: 356 RGPNVFK 362

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGS--CGTVVRNAELKVIDPEIGASLPHNQPGEICIRG 58
           MTE     +   GF    F   S     G  V   E K+ D E G  LP    GEI +R 
Sbjct: 362 MTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRT 421

Query: 59  PQIMK 63
           P ++K
Sbjct: 422 PSLLK 426

Length = 567

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 22  KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSD 72
           K GS G  + + E+++ D   G  LP N  GEIC+RGP++ K     +W D
Sbjct: 317 KIGSTGRALAHVEIRIADGA-GRWLPPNMKGEICMRGPKVTK----GYWKD 362

Length = 497

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE G  LS  L   ++P     G+ G  +   E++++D + G  L   + GEI +RGP 
Sbjct: 240 MTETGMALSNPLDGERRP-----GTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPN 294

Query: 61  IMKVAELEFW 70
           +      E+W
Sbjct: 295 VFS----EYW 300

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG 58
           MTE G      +       P   GSCG      E++++D + G  +P  + GE+ +R 
Sbjct: 228 MTETG------VPIIAPGDPAPPGSCGRPRPGVEVRIVDED-GREVPPGEVGELVVRP 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 1   MTEAGPVLSMCLGFAKQPFPT---KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIR 57
           MTEA   +      A  P P    K GS G      E+ ++D + G  LP  Q GEI IR
Sbjct: 152 MTEAAHQI------ASNPLPPLVRKPGSVGRPA-GVEVAILDDD-GRPLPPGQEGEIVIR 203

Query: 58  GPQIMK 63
           GP +  
Sbjct: 204 GPNVTA 209

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 20  PTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
           P +  SCG       + ++D + G  +   + GEIC+RGP +M 
Sbjct: 335 PKRLTSCGRPTPGLRVALLDED-GREVAQGEVGEICVRGPLVMD 377

Length = 524

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE+  V +   GF  +   +K  S G +  N + KV+D   G  LP    GE+ I+GP 
Sbjct: 354 MTESTAVGTR--GFNTEKL-SKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPG 410

Query: 61  IMK 63
           +MK
Sbjct: 411 VMK 413

Length = 560

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 26  CGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
           CG  +   E+++ + E G  LP    G IC+RGP +M
Sbjct: 387 CGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLM 422

Length = 579

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 1   MTEAGPVLSMCL---GFAKQPFPTK---SGSCGTVVRNAELKVIDPEIGASLPHN--QPG 52
           MTE  P+ ++          P   K       G  V   EL+++D E G  LP +    G
Sbjct: 312 MTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDE-GNELPWDGKTVG 370

Query: 53  EICIRGPQIMK------VAELEFWSDG 73
           E+ +RGP +            E   DG
Sbjct: 371 ELVVRGPWVTGSYYKDPEKTEELTRDG 397

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 2   TEAG-PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP 59
           TE G P+L++  G   +P  T+ GS G  +    +K+++   G     N+ G + I GP
Sbjct: 390 TETGWPILAIARGVEDRP--TRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGP 446

Length = 629

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 33  AELKVIDPEIGASLPHNQPGEICIRGPQIM 62
           A ++  DP+ GA LP  + GEI IR P +M
Sbjct: 359 ARVRARDPQDGALLPDGESGEIEIRAPSLM 388

Length = 540

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 22  KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
           +  S G  + N EL V+D + G      + GE+  RG  +MK
Sbjct: 169 RPDSIGKAIPNVELWVVDED-GNRCAPGEVGELVHRGANVMK 209

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 16/63 (25%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE   V+S+       P     G+ G  +   E+K+ D            GEI +RGP 
Sbjct: 386 LTETSAVVSVN-----PPDRFVLGTVGKPLPGIEVKIADD-----------GEILVRGPN 429

Query: 61  IMK 63
           +MK
Sbjct: 430 VMK 432

Length = 613

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 25  SCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNR 84
           SCG V R+    ++DP+ GA LP  + GEI + G  I +     +W   G  EE  +   
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGR----GYW---GRPEETERTFG 455

Query: 85  LTMGSSLGWASKAQAEP--GRWAFDLALRT 112
             + S L   S A      G W     LRT
Sbjct: 456 AKLQSRLAEGSHADGAADDGTW-----LRT 480

Length = 612

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 24  GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP 59
           G+ G  V   E +++D   G  +P    G++ +RGP
Sbjct: 260 GTTGRPVPGYEARLVDES-GREVPAGTVGDLWVRGP 294

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE+ PV      + K+      GS G    + E  ++  E G +LP  + GEI ++GPQ
Sbjct: 357 LTESSPVTHSNFLWEKR----VPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQ 412

Query: 61  IMK 63
           IMK
Sbjct: 413 IMK 415

Length = 563

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 9/48 (18%)

Query: 34  ELKVIDPEIGASLPHNQPGEICIRGPQI------M--KVAELEFWSDG 73
            L+V DPE GA LP  + G I ++GP +      M  K AE EF +DG
Sbjct: 331 SLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAE-EFRADG 377

Length = 504

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 25  SCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQI 61
           S G V  +    ++DPE  + LP  Q GEI + G  I
Sbjct: 392 SAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNI 428

Length = 631

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 17  QPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQI 61
           +  P K  + G  + N    V+DP++   +P    GE+CI GP +
Sbjct: 251 RLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGV 295

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE     S         F  K GS G  +   EL++++P         Q GEI +RGP 
Sbjct: 222 MTETA---SQVATLKPDDFLAKLGSVGKPLPGRELRIVNP---------QDGEILVRGPS 269

Query: 61  IMK 63
           +  
Sbjct: 270 LFL 272

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 27  GTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
           G         ++D + G  +P  + GE+ I GPQ+  
Sbjct: 275 GYPKPGLRALILDED-GRPVPPGEEGELVIAGPQVSP 310

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           M+EAG V  M +         K+G+ G      + +V+D + G   P   PGE+ +RGP 
Sbjct: 285 MSEAGTVFGMSVDCDV--IRAKAGAAGIPTPTVQTRVVDDQ-GNDCPAGVPGELLLRGPN 341

Query: 61  I 61
           +
Sbjct: 342 L 342

Length = 488

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	99.94
PLN02614	666	long-chain acyl-CoA synthetase	99.92
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.92
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	99.91
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.91
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.9
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.9
PTZ00342	746	acyl-CoA synthetase; Provisional	99.89
PTZ00216	700	acyl-CoA synthetase; Provisional	99.89
PLN02574	560	4-coumarate--CoA ligase-like	99.89
PLN02736	651	long-chain acyl-CoA synthetase	99.88
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.88
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.88
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.88
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.87
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.87
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.87
PLN02654	666	acetate-CoA ligase	99.86
PRK00174	637	acetyl-CoA synthetase; Provisional	99.86
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.86
PLN02246	537	4-coumarate--CoA ligase	99.86
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.86
PRK09274	552	peptide synthase; Provisional	99.86
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.86
PRK12467	3956	peptide synthase; Provisional	99.86
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.86
PRK07638	487	acyl-CoA synthetase; Validated	99.85
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	99.85
PRK05691	4334	peptide synthase; Validated	99.85
PRK09088	488	acyl-CoA synthetase; Validated	99.85
PRK12316	5163	peptide synthase; Provisional	99.85
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.85
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.85
PRK06164	540	acyl-CoA synthetase; Validated	99.85
PRK06178	567	acyl-CoA synthetase; Validated	99.85
PLN02330	546	4-coumarate--CoA ligase-like 1	99.84
PRK12316	5163	peptide synthase; Provisional	99.84
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.84
PRK06839	496	acyl-CoA synthetase; Validated	99.84
PRK04319	570	acetyl-CoA synthetase; Provisional	99.84
PRK06145	497	acyl-CoA synthetase; Validated	99.84
PRK06060	705	acyl-CoA synthetase; Validated	99.84
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.84
PRK05857	540	acyl-CoA synthetase; Validated	99.84
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.84
PRK07514	504	malonyl-CoA synthase; Validated	99.83
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.83
PRK12467	3956	peptide synthase; Provisional	99.83
PRK08315	559	AMP-binding domain protein; Validated	99.83
PRK07529	632	AMP-binding domain protein; Validated	99.83
PLN03051	499	acyl-activating enzyme; Provisional	99.83
PLN02860	563	o-succinylbenzoate-CoA ligase	99.83
PRK13390	501	acyl-CoA synthetase; Provisional	99.83
PRK05691	4334	peptide synthase; Validated	99.83
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.82
PRK07788	549	acyl-CoA synthetase; Validated	99.82
PRK05852	534	acyl-CoA synthetase; Validated	99.82
PRK08316	523	acyl-CoA synthetase; Validated	99.82
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.82
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.82
PRK07470	528	acyl-CoA synthetase; Validated	99.82
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.82
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.81
PRK13382	537	acyl-CoA synthetase; Provisional	99.81
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.81
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.81
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.81
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.81
PRK12583	558	acyl-CoA synthetase; Provisional	99.81
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.81
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.81
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.81
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.81
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.81
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.81
PRK07787	471	acyl-CoA synthetase; Validated	99.81
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.8
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.8
PRK12582	624	acyl-CoA synthetase; Provisional	99.8
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.8
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.79
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	99.79
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.79
PRK07867	529	acyl-CoA synthetase; Validated	99.79
PRK06188	524	acyl-CoA synthetase; Validated	99.78
PRK13388	540	acyl-CoA synthetase; Provisional	99.78
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.78
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.78
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.78
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.78
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.78
PRK09192	579	acyl-CoA synthetase; Validated	99.78
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.78
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.78
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.78
PRK13383	516	acyl-CoA synthetase; Provisional	99.77
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.77
PRK13391	511	acyl-CoA synthetase; Provisional	99.77
PRK05850	578	acyl-CoA synthetase; Validated	99.76
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.75
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.73
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.73
PLN02479	567	acetate-CoA ligase	99.73
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.73
PLN03102	579	acyl-activating enzyme; Provisional	99.72
PRK08162	545	acyl-CoA synthetase; Validated	99.71
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.71
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	99.69
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.69
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.66
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.65
PLN03052	728	acetate--CoA ligase; Provisional	99.65
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.65
PRK07868	994	acyl-CoA synthetase; Validated	99.63
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.6
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.58
PRK07798	533	acyl-CoA synthetase; Validated	99.56
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.56
PRK08308	414	acyl-CoA synthetase; Validated	99.29
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.11
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.39
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	98.25
PTZ00297	1452	pantothenate kinase; Provisional	98.08
KOG3628	1363	consensus Predicted AMP-binding protein [General f	97.94
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	97.69
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	97.65
PRK09188	365	serine/threonine protein kinase; Provisional	97.64
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	97.24
KOG3628	1363	consensus Predicted AMP-binding protein [General f	97.18
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	95.4
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	85.98

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.94  E-value=3.2e-27  Score=187.92  Aligned_cols=106  Identities=36%  Similarity=0.523  Sum_probs=95.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      |||+++.++.+...   +. .+++++|+++++.+++|.+ ++|+.+++++.||||++|+++|.||    |+||++|++.|
T Consensus       334 mTE~~~~~~~~~~~---~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY----~~NpeaT~~~~  404 (537)
T KOG1176|consen  334 MTEAGGLITSNDWG---PE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGY----LKNPEATKEAF  404 (537)
T ss_pred             cccccCceeecCCC---cc-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhh----cCChHHHHhhc
Confidence            79999777766431   11 5889999999999999888 8999999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        ++|||||         ||+|++|+||+| |++|+||+||.+|..
T Consensus       405 ~--------~~GW~~T---------GDiGy~D~DG~l~IvdR~KdlIk~~G~q  440 (537)
T KOG1176|consen  405 D--------DDGWFHT---------GDLGYFDEDGYLYIVDRSKDLIKYGGEQ  440 (537)
T ss_pred             c--------cCCcccc---------CceEEEcCCCeEEEecchhhheeeCCEE
Confidence            6        4599999         999999999999 999999999999864

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.92  E-value=3.5e-25  Score=180.78  Aligned_cols=106  Identities=23%  Similarity=0.324  Sum_probs=88.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcC-C-CCccCCCCCCeEEEEEcCccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDP-E-IGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~-~-~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~   78 (133)
                      |||+++.++...   +. ...+.+++|+|+|+++++|+|. + .++++++|+.|||+|+||++|.||    |++|+.|++
T Consensus       420 ~TE~~~~~~~~~---~~-~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY----~~~pe~T~~  491 (666)
T PLN02614        420 LTESCAGTFVSL---PD-ELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGY----YKREDLTKE  491 (666)
T ss_pred             hHhhhhheeeec---cc-cCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccc----cCCHHHhhh
Confidence            689875443322   11 1235689999999999999983 2 247899999999999999999999    999999999


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEe-CCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRF-DPLF  132 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki-~~~~  132 (133)
                      +|         .+|||+|         ||+|++|+||+| |+||+|||||+ .|.+
T Consensus       492 ~f---------~dGw~~T---------GDlg~~d~dG~l~i~gR~kd~ik~~~G~~  529 (666)
T PLN02614        492 VL---------IDGWLHT---------GDVGEWQPNGSMKIIDRKKNIFKLSQGEY  529 (666)
T ss_pred             hh---------ccCCccc---------ceEEEEcCCCCEEEEEcchhceecCCCee
Confidence            99         3699999         999999999999 99999999996 5653

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.92  E-value=5e-25  Score=177.23  Aligned_cols=94  Identities=30%  Similarity=0.460  Sum_probs=85.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      ||||+++++.++     +.....+++|+|+|+++++|+| +          |||+||||++|+||    |++|++|+++|
T Consensus       386 lTEts~~~~v~~-----~~~~~~gtvG~p~p~~evKI~d-~----------GEilVRG~~Vm~GY----yk~pe~Taeaf  445 (613)
T COG1022         386 LTETSAVVSVNP-----PDRFVLGTVGKPLPGIEVKIAD-D----------GEILVRGPNVMKGY----YKNPEATAEAF  445 (613)
T ss_pred             ccccccceEEcc-----ccCcccCCcCCcCCCceEEEcc-C----------ceEEEecchhcchh----cCChHHHhhhc
Confidence            799998887764     2356789999999999999998 4          99999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .        ++|||+|         ||+|.+|++|+| |+||+||+||...-
T Consensus       446 ~--------~DGWf~T---------GDlg~~d~~g~L~i~gRkK~~i~l~~G  480 (613)
T COG1022         446 T--------EDGWFRT---------GDLGELDEDGYLVITGRKKELIKLSNG  480 (613)
T ss_pred             c--------ccCCccc---------CceeEEcCCCcEEEeecccceEECCCC
Confidence            7        6899999         999999999999 99999999997643

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=99.91  E-value=9e-25  Score=175.48  Aligned_cols=104  Identities=26%  Similarity=0.357  Sum_probs=91.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      ||||++.++...+     .....+++|.|+|+++++++|++..+.-+.+..|||||||+++|.||    +++|++|+++|
T Consensus       453 lTEts~g~~~~~~-----~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GY----yK~p~~T~e~i  523 (691)
T KOG1256|consen  453 LTETSAGTTLTLP-----GDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGY----YKDPEKTAEAI  523 (691)
T ss_pred             ccccCCceEeccC-----CCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceec----cCChHHHhhhh
Confidence            7999865555432     12378999999999999999976666667777899999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDP  130 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~  130 (133)
                      .        ++||+||         ||+|++|++|.| |+||+|++||+-.
T Consensus       524 d--------eDGWLhT---------GDiG~~~p~G~l~IidRkK~ifklaq  557 (691)
T KOG1256|consen  524 D--------EDGWLHT---------GDIGEWDPNGTLKIIDRKKNIFKLAQ  557 (691)
T ss_pred             c--------ccccccc---------ccceeECCCccEEEEecccceEEcCC
Confidence            7        7899999         999999999999 9999999999764

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=1.8e-24  Score=172.68  Aligned_cols=107  Identities=30%  Similarity=0.486  Sum_probs=91.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      |||+++.++.....   +...+.+++|+|+|+++++|+|+++++++| |++|||+|+||+++.||    |++|+.|++.|
T Consensus       326 ~TE~~~~~~~~~~~---~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY----~~~pe~t~~~f  397 (534)
T COG0318         326 LTETSPVVTINPPD---DLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGY----WNRPEATAEAF  397 (534)
T ss_pred             ccccCceeecCCCc---hhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhh----cCChHHHHHhh
Confidence            79998766665421   102466788999999999999976555666 99999999999999999    99999999988


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .+|||+|         ||+|++|++|+| |+||.||+||+.|.+
T Consensus       398 ~--------~~gW~~T---------GDlg~~d~~G~l~i~gR~kd~I~~gG~n  433 (534)
T COG0318         398 D--------EDGWLRT---------GDLGYVDEDGYLYIVGRLKDLIISGGEN  433 (534)
T ss_pred             c--------cCCeeee---------cceEEEcCCccEEEEeccceEEEeCCeE
Confidence            5        3599999         999999999999 999999999999865

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.90  E-value=5.7e-24  Score=173.45  Aligned_cols=106  Identities=22%  Similarity=0.322  Sum_probs=86.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcC-CCC-ccCCCCCCeEEEEEcCccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDP-EIG-ASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~-~~g-~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~   78 (133)
                      |||+++.++....    ....+.+++|+|+|+++++|+|. ++| ..++.+..|||+|+||+++.||    |++|++|++
T Consensus       417 ~TE~~~~~~~~~~----~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY----~~~pe~T~~  488 (660)
T PLN02861        417 LTESCGGCFTSIA----NVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGY----HKRQDLTEE  488 (660)
T ss_pred             hhhhhhceeeccc----ccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccc----cCCHHHHHh
Confidence            6898765544321    11235689999999999999973 334 3445667899999999999999    999999999


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEe-CCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRF-DPLF  132 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki-~~~~  132 (133)
                      +|.         +|||+|         ||+|++|+||+| |+||+||+||+ +|.+
T Consensus       489 ~f~---------dGw~~T---------GDlg~~d~dG~l~i~GR~kd~Ik~~~G~~  526 (660)
T PLN02861        489 VLI---------DGWFHT---------GDIGEWQPNGAMKIIDRKKNIFKLSQGEY  526 (660)
T ss_pred             hhh---------ccCccc---------CceEEECCCCcEEEEeccccceEcCCCeE
Confidence            993         699999         999999999999 99999999997 5653

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.90  E-value=6.4e-24  Score=163.20  Aligned_cols=105  Identities=30%  Similarity=0.500  Sum_probs=90.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++...   ......+..++|+|+|+++++|+|+++++++++|+.|||+|+||.++.||    +++|+.++++|
T Consensus       312 ~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy----~~~~~~~~~~~  384 (417)
T PF00501_consen  312 STETGSIATIRP---PEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGY----YNDPELTAEAF  384 (417)
T ss_dssp             EGGGSSEEEEEE---TTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEE----TTBHHHHHHHE
T ss_pred             ccccceeeeccc---ccccccccccccccccccccccccccccccccccccccccccCCccceee----ecccccccccc
Confidence            589987766442   11122466789999999999999976699999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFD  129 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~  129 (133)
                      .        ++|||+|         ||+|++|+||+| ++||+||+||+.
T Consensus       385 ~--------~~~~~~T---------GD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  385 I--------DDGWYRT---------GDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             E--------TTSEEEE---------EEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             c--------cccceec---------ceEEEECCCCeEEEEEeeCCEEEeC
Confidence            6        3579999         999999999999 999999999984

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.89  E-value=1.9e-23  Score=172.43  Aligned_cols=105  Identities=17%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCC-CCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~-p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~   79 (133)
                      |||+++.++....     .....+++|+|+ |+++++|+|.++.........|||+|+||++|.||    |++|++|+++
T Consensus       495 lTEt~~~~~~~~~-----~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY----~~~pe~T~~~  565 (746)
T PTZ00342        495 LTETTGPIFVQHA-----DDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGY----FLEKEQTKNA  565 (746)
T ss_pred             cCcccceeeeccC-----CCCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccc----cCChhhhhhh
Confidence            7999766554321     234678999998 99999999855444455556799999999999999    9999999999


Q ss_pred             HhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEe-CCC
Q 032813           80 IKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRF-DPL  131 (133)
Q Consensus        80 f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki-~~~  131 (133)
                      |.        .+|||+|         ||+|++|+||+| |+||+||+||+ .|.
T Consensus       566 f~--------~dGW~~T---------GDig~~d~dG~l~i~gR~kdlIkls~Ge  602 (746)
T PTZ00342        566 FT--------EDGYFKT---------GDIVQINKNGSLTFLDRSKGLVKLSQGE  602 (746)
T ss_pred             cC--------cCCcccC---------CcEEEECCCCeEEEEccCCCeEEeCCCE
Confidence            96        5799999         999999999999 99999999996 453

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.89  E-value=1.7e-23  Score=171.58  Aligned_cols=106  Identities=20%  Similarity=0.262  Sum_probs=87.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCC-CccCCCCCCeEEEEEcCccccccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEI-GASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~-g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~   79 (133)
                      |||+++.++....     .....+++|+|+|+++++|+|++. ....+++..|||+|+||+++.||    |++|++|+++
T Consensus       461 ~TEt~~~~~~~~~-----~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY----~~~pe~T~~~  531 (700)
T PTZ00216        461 LTETVCCGGIQRT-----GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGY----YKQEELTREV  531 (700)
T ss_pred             cccccccccccCC-----CCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchh----cCChhHhhhh
Confidence            6998765544321     234568999999999999999432 23345667899999999999999    9999999999


Q ss_pred             HhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEE-eCCCC
Q 032813           80 IKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVR-FDPLF  132 (133)
Q Consensus        80 f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Ik-i~~~~  132 (133)
                      |.        .+|||+|         ||+|++|+||+| |+||+||||| +.|.+
T Consensus       532 f~--------~dGw~~T---------GDig~~d~dG~l~i~GR~kd~ik~~~G~~  569 (700)
T PTZ00216        532 LD--------EDGWFHT---------GDVGSIAANGTLRIIGRVKALAKNCLGEY  569 (700)
T ss_pred             cc--------ccCCeec---------cceEEEcCCCcEEEEEehHhheecCCCce
Confidence            96        5799999         999999999999 9999999999 77753

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.89  E-value=2.7e-23  Score=166.18  Aligned_cols=108  Identities=28%  Similarity=0.385  Sum_probs=91.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++...   .........++|+|+|+++++|+|++++++++.|+.|||+|+|++++.||    |++++.+++.|
T Consensus       354 ~tE~~~~~~~~~---~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY----~~~~~~t~~~~  426 (560)
T PLN02574        354 MTESTAVGTRGF---NTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGY----LNNPKATQSTI  426 (560)
T ss_pred             ccccCceeecCC---CccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhh----cCChhHhhhhc
Confidence            588875443221   11122456799999999999999987899999999999999999999999    99999999888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .+|||+|         ||+|++|++|++ ++||+||+||++|.+
T Consensus       427 ~--------~~g~~~T---------GDlg~~~~~G~l~i~GR~~d~i~~~G~~  462 (560)
T PLN02574        427 D--------KDGWLRT---------GDIAYFDEDGYLYIVDRLKEIIKYKGFQ  462 (560)
T ss_pred             c--------CCCCccc---------ceEEEEECCCeEEEEecchhheEECCEE
Confidence            5        5799999         999999999999 999999999999864

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.88  E-value=5.6e-23  Score=167.14  Aligned_cols=106  Identities=29%  Similarity=0.368  Sum_probs=86.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCc---cCCCCCCeEEEEEcCccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGA---SLPHNQPGEICIRGPQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~---~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~   77 (133)
                      |||+++.++...     ......+++|+|+|+++++|+|.+++.   ...++..|||+|+||++|.||    |++|+.|+
T Consensus       410 ~TE~~~~~~~~~-----~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY----~~~~~~t~  480 (651)
T PLN02736        410 MTETSCVISGMD-----EGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGY----YKDEVQTR  480 (651)
T ss_pred             hHHhchheeccC-----CCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCcccccc----ccCHHHHH
Confidence            689876555432     123456899999999999999843332   223445799999999999999    99999999


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEe-CCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRF-DPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki-~~~~  132 (133)
                      ++|.        .+|||+|         ||+|++|+||+| |+||+||+||+ +|.+
T Consensus       481 ~~~~--------~dgw~~T---------GDlg~~d~dG~l~i~GR~kd~ik~~~G~~  520 (651)
T PLN02736        481 EVID--------EDGWLHT---------GDIGLWLPGGRLKIIDRKKNIFKLAQGEY  520 (651)
T ss_pred             hhhc--------cCCCeec---------cceEEEcCCCcEEEEEechhheEcCCCcE
Confidence            9995        5799999         999999999999 99999999997 5754

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.88  E-value=6.7e-23  Score=168.11  Aligned_cols=107  Identities=22%  Similarity=0.265  Sum_probs=85.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCC-ccC--CCCCCeEEEEEcCccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIG-ASL--PHNQPGEICIRGPQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g-~~~--~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~   77 (133)
                      |||+++.++....     .....+++|+|+|+++++|+|++++ ..+  .++..|||+|+||++|.||    |++|+.|+
T Consensus       454 ~TEt~~~~~~~~~-----~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY----~~~pe~T~  524 (696)
T PLN02387        454 LTETCAGATFSEW-----DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGY----FKNQEKTD  524 (696)
T ss_pred             hhhcccceeecCc-----ccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchh----cCCHHHHh
Confidence            6998766554421     1245689999999999999984333 222  3445799999999999999    99999999


Q ss_pred             HHHhhhhcccCCCCc--ccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeC-CC
Q 032813           78 EIIKLNRLTMGSSLG--WASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFD-PL  131 (133)
Q Consensus        78 ~~f~~~~~~~~~~~g--w~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~-~~  131 (133)
                      ++|..+      .+|  ||+|         ||+|++|+||+| |+||+||+||+. |.
T Consensus       525 ~~f~~d------~~G~~W~~T---------GDig~~d~dG~l~i~gR~kd~ik~~~Ge  567 (696)
T PLN02387        525 EVYKVD------ERGMRWFYT---------GDIGQFHPDGCLEIIDRKKDIVKLQHGE  567 (696)
T ss_pred             hhhccc------cCCCceeec---------CceEEECCCCcEEEEEcccceEECCCCe
Confidence            998421      234  9999         999999999999 999999999984 64

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.88  E-value=7.8e-23  Score=163.10  Aligned_cols=108  Identities=19%  Similarity=0.287  Sum_probs=87.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++....    .......++|+|+++++++|+|+++++++++|+.|||+|+|++++.||    |++++.+.  |
T Consensus       334 ~TE~~~~~~~~~~----~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY----~~~~~~~~--~  403 (539)
T PRK06334        334 TTECSPVITINTV----NSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGY----LGEDFGQG--F  403 (539)
T ss_pred             ccccCceEEeccC----CCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccc----cCCccccc--c
Confidence            6898866554321    112345689999999999999966789999999999999999999999    99988643  2


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..    . ..++||+|         ||+|++|++|+| |+||.||+||++|.+
T Consensus       404 ~~----~-~~~~w~~T---------GD~g~~d~~G~l~~~GR~~d~ik~~G~~  442 (539)
T PRK06334        404 VE----L-GGETWYVT---------GDLGYVDRHGELFLKGRLSRFVKIGAEM  442 (539)
T ss_pred             ee----e-CCceeEEC---------CCEEEECCCCeEEEEeccCCeEEECCEE
Confidence            10    0 13589999         999999999999 999999999999864

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=1.1e-22  Score=164.80  Aligned_cols=95  Identities=23%  Similarity=0.232  Sum_probs=81.5

Q ss_pred             CccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhc---------ccCCCCccc
Q 032813           24 GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRL---------TMGSSLGWA   94 (133)
Q Consensus        24 ~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~---------~~~~~~gw~   94 (133)
                      .++|+|+++.+++|+|++++++++.|+.|||+|+||+++.||    |++++.|++.|.....         .....++||
T Consensus       391 ~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY----~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~  466 (631)
T PRK07769        391 VSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGY----WGKPEETAATFQNILKSRLSESHAEGAPDDALWV  466 (631)
T ss_pred             EeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccc----cCChhHHHHHHhhhcccccccccccCcccCCCee
Confidence            589999999999999977899999999999999999999999    9999999999962110         000124799


Q ss_pred             ccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           95 SKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        95 ~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +|         ||+|+++ ||+| |+||+|||||++|.+
T Consensus       467 ~T---------GDlg~~~-dG~l~i~GR~~d~Ik~~G~~  495 (631)
T PRK07769        467 RT---------GDYGVYF-DGELYITGRVKDLVIIDGRN  495 (631)
T ss_pred             ec---------cccccEE-CCEEEEEcccccEEEECCee
Confidence            99         9999995 9999 999999999999864

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.87  E-value=3.6e-22  Score=169.75  Aligned_cols=114  Identities=28%  Similarity=0.404  Sum_probs=93.3

Q ss_pred             CCCCCcccccccCCCC-----CCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchh
Q 032813            1 MTEAGPVLSMCLGFAK-----QPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGH   75 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~-----~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~   75 (133)
                      +||++..++.......     .....+.+++|+|+|+++++|+|+++++++++|+.|||+|+|++++.||    |++|+.
T Consensus       932 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~ 1007 (1146)
T PRK08633        932 ATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGY----LGDPEK 1007 (1146)
T ss_pred             cccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccc----cCCccc
Confidence            6898876554322110     0112356799999999999999987899999999999999999999999    999999


Q ss_pred             hHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           76 DEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        76 t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +++.|...     ..++||+|         ||+|++|+||++ ++||+||+||++|.+
T Consensus      1008 t~~~~~~~-----~~~~~~~T---------GD~~~~~~~g~l~~~gR~~d~i~~~G~~ 1051 (1146)
T PRK08633       1008 TAEVIKDI-----DGIGWYVT---------GDKGHLDEDGFLTITDRYSRFAKIGGEM 1051 (1146)
T ss_pred             hHHHhhcC-----CCCCeEEC---------CCEEEEcCCceEEEEecccchhhhCcEE
Confidence            99988511     12489999         999999999999 999999999998853

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.87  E-value=6.3e-22  Score=159.87  Aligned_cols=95  Identities=25%  Similarity=0.375  Sum_probs=80.5

Q ss_pred             CccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcc----------cCCCCcc
Q 032813           24 GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLT----------MGSSLGW   93 (133)
Q Consensus        24 ~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~----------~~~~~gw   93 (133)
                      +++|+|+|+++++|+|++++++++.|+.|||+|+||+++.||    |++|+.|+++|......          ....++|
T Consensus       402 ~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w  477 (612)
T PRK12476        402 VSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGY----WGRPEETERTFGAKLQSRLAEGSHADGAADDGTW  477 (612)
T ss_pred             EeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccc----cCChHHHHHHHhhhhccccccccccccccCCCCe
Confidence            589999999999999965599999999999999999999999    99999999999521100          0012369


Q ss_pred             cccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           94 ASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        94 ~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |+|         ||+|+++ ||+| |+||+||+||++|.+
T Consensus       478 ~~T---------GDlg~~~-dG~l~i~GR~~d~I~~~G~~  507 (612)
T PRK12476        478 LRT---------GDLGVYL-DGELYITGRIADLIVIDGRN  507 (612)
T ss_pred             eec---------cccceeE-CCEEEEEeccCcEEEECCcc
Confidence            999         9999985 9999 999999999999864

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.87  E-value=7.6e-22  Score=160.68  Aligned_cols=107  Identities=18%  Similarity=0.266  Sum_probs=89.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcC---ccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP---QIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp---~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++..++....    ......+++|+|+|+++++|+| ++|++++.|+.|||+|++|   +++.||    |++++.++
T Consensus       414 ~TE~~~~~~~~~~----~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy----~~~~~~~~  484 (647)
T PTZ00237        414 QTEIGITYLYCYG----HINIPYNATGVPSIFIKPSILS-EDGKELNVNEIGEVAFKLPMPPSFATTF----YKNDEKFK  484 (647)
T ss_pred             hHHhChhhhccCC----CCCCCCCCCccCcCCceEEEEC-CCCCCCCCCCceEEEEeccCCchhhCce----eCCHHHHH
Confidence            6898754433221    1123347999999999999999 5899999999999999986   789999    99999998


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.|..       .+|||+|         ||+|++|++|+| |+||+||+||+.|.+
T Consensus       485 ~~f~~-------~~g~~~T---------GDlg~~d~dG~l~i~GR~dd~i~~~G~r  524 (647)
T PTZ00237        485 QLFSK-------FPGYYNS---------GDLGFKDENGYYTIVSRSDDQIKISGNK  524 (647)
T ss_pred             HHHhC-------CCCEEEC---------CcEEEECCCCeEEEEeccCCEEEECCEE
Confidence            87741       2689999         999999999999 999999999999864

>PLN02654 acetate-CoA ligase

Probab=99.86  E-value=1e-21  Score=160.39  Aligned_cols=109  Identities=21%  Similarity=0.269  Sum_probs=90.4

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEc--CccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG--PQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~g--p~~~~GY~~~~~~~~~~t~~   78 (133)
                      +||+++.++...+   .....+++++|+|+|+++++|+| ++|++++.++.|||+|++  |+++.||    |++++++++
T Consensus       434 ~TE~g~~~~~~~~---~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~~Gel~v~~~~p~~~~gy----~~~~~~~~~  505 (666)
T PLN02654        434 QTETGGFMITPLP---GAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTL----YGDHERYET  505 (666)
T ss_pred             ccccCCeeeccCC---CCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCCceEEEEcCCCchhhhhh----cCChHHHHH
Confidence            5888765443321   11235678999999999999999 679999999999999998  7899999    999999888


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .|...      .+|||+|         ||+|++|+||++ |+||+||+||+.|..
T Consensus       506 ~~~~~------~~g~~~T---------GD~~~~d~dG~l~i~GR~dd~I~~~G~r  545 (666)
T PLN02654        506 TYFKP------FAGYYFS---------GDGCSRDKDGYYWLTGRVDDVINVSGHR  545 (666)
T ss_pred             hhhhc------CCCEEEe---------CceEEECCCCcEEEeeeccCeEEeCCEE
Confidence            76421      2589999         999999999999 999999999999864

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.86  E-value=1.4e-21  Score=158.35  Aligned_cols=109  Identities=23%  Similarity=0.245  Sum_probs=89.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEc--CccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG--PQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~g--p~~~~GY~~~~~~~~~~t~~   78 (133)
                      +||++..++....   .....+++++|+|+++++++|+| +++++++.|+.|||+|+|  |++++||    |++++.+.+
T Consensus       404 ~TE~~~~~~~~~~---~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy----~~~~~~~~~  475 (637)
T PRK00174        404 QTETGGIMITPLP---GATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTI----YGDHERFVK  475 (637)
T ss_pred             ccccCCceEecCC---CCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccc----cCCHHHHHH
Confidence            5888765543221   11234567899999999999999 679999999999999999  6899999    999998877


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .|...      .+|||+|         ||+|++|+||+| |+||+||+||++|..
T Consensus       476 ~~~~~------~~g~~~T---------GDl~~~d~dG~l~~~GR~dd~ik~~G~~  515 (637)
T PRK00174        476 TYFST------FKGMYFT---------GDGARRDEDGYYWITGRVDDVLNVSGHR  515 (637)
T ss_pred             hhhcC------CCCEEEC---------CceEEEcCCCcEEEEEecccEEEeCCEE
Confidence            76311      3689999         999999999999 999999999998853

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.86  E-value=7e-22  Score=161.31  Aligned_cols=105  Identities=23%  Similarity=0.328  Sum_probs=86.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcC-CCC-ccCCCCCCeEEEEEcCccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDP-EIG-ASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~-~~g-~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~   78 (133)
                      |||+++.++....    ......+++|+|+|+++++|+|. +.+ .+++.+..|||+|+||+++.||    |++|+.|++
T Consensus       417 ~TE~~~~~~~~~~----~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY----~~~~e~t~~  488 (660)
T PLN02430        417 LTETLGPTTLGFP----DEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGY----YKNPELTEE  488 (660)
T ss_pred             hhhhhhceEeecc----ccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccc----cCChHHhhh
Confidence            6898765554321    11234689999999999999862 333 4566667899999999999999    999999999


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEe-CCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRF-DPL  131 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki-~~~  131 (133)
                      +|         .+|||+|         ||+|++|+||+| |+||+||+||+ .|.
T Consensus       489 ~~---------~dGw~~T---------GDig~~d~dG~l~i~gR~kd~ik~~~G~  525 (660)
T PLN02430        489 VM---------KDGWFHT---------GDIGEILPNGVLKIIDRKKNLIKLSQGE  525 (660)
T ss_pred             hh---------hccceec---------cceEEECCCCcEEEEEcccccEEcCCCc
Confidence            98         4799999         999999999999 99999999997 454

>PLN02246 4-coumarate--CoA ligase

Probab=99.86  E-value=1.6e-21  Score=154.99  Aligned_cols=110  Identities=56%  Similarity=0.924  Sum_probs=91.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++............+++++|+|+++++++|+|++++++++.|+.|||+|+|+.++.||    |++++.+++.|
T Consensus       333 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY----~~~~~~~~~~~  408 (537)
T PLN02246        333 MTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGY----LNDPEATANTI  408 (537)
T ss_pred             ccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccc----cCCchhhhhcc
Confidence            58887654432211111223456789999999999999977899999999999999999999999    99999998887


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .        .++||+|         ||+|+++++|++ ++||.||+||+.|.
T Consensus       409 ~--------~~~~~~T---------GD~~~~~~~g~l~~~GR~dd~i~~~G~  443 (537)
T PLN02246        409 D--------KDGWLHT---------GDIGYIDDDDELFIVDRLKELIKYKGF  443 (537)
T ss_pred             c--------CCCCeee---------cceEEEeCCCeEEEEecccceEEECCE
Confidence            5        5689999         999999999999 99999999999875

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.86  E-value=1.3e-21  Score=156.47  Aligned_cols=104  Identities=37%  Similarity=0.602  Sum_probs=90.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++....     ....++++|+|+|+++++|+| +++++++.|+.|||+|+||+++.||    |++++.+++.|
T Consensus       360 ~tE~~~~~~~~~~-----~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~t~~~~  429 (562)
T PRK05677        360 MTETSPVVSVNPS-----QAIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKGY----WQRPEATDEIL  429 (562)
T ss_pred             ccccCcceeecCc-----cCCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeEEEEecCccchhh----cCCchhhhhcc
Confidence            5888765544321     123567899999999999999 5789999999999999999999999    99999999888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .        .++||+|         ||+|++|++|++ +.||+||+||++|.
T Consensus       430 ~--------~~g~~~T---------GDlg~~~~~G~l~i~GR~~d~i~~~G~  464 (562)
T PRK05677        430 D--------SDGWLKT---------GDIALIQEDGYMRIVDRKKDMILVSGF  464 (562)
T ss_pred             C--------CCCcccc---------cceEEECCCCcEEEEecCcCeEEeCCE
Confidence            5        5689999         999999999999 99999999999875

>PRK09274 peptide synthase; Provisional

Probab=99.86  E-value=1.5e-21  Score=155.39  Aligned_cols=90  Identities=20%  Similarity=0.210  Sum_probs=79.4

Q ss_pred             CccccCCCCcEEEEEcCC--------CCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCc--c
Q 032813           24 GSCGTVVRNAELKVIDPE--------IGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLG--W   93 (133)
Q Consensus        24 ~~vG~p~p~~~v~i~d~~--------~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~g--w   93 (133)
                      .++|+|+|+++++|+|+.        ++++++.|+.|||+|+||+++.||    |++|+.++..|..+      .+|  |
T Consensus       352 ~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY----~~~~~~t~~~~~~~------~~g~~w  421 (552)
T PRK09274        352 ICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSY----YNRPEATRLAKIPD------GQGDVW  421 (552)
T ss_pred             cccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccc----cCChHHhhhhhccc------CCCCcE
Confidence            479999999999999852        467899999999999999999999    99999998877421      235  9


Q ss_pred             cccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           94 ASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        94 ~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |+|         ||+|++|+||+| ++||+||+||++|.+
T Consensus       422 ~~T---------GDlg~~d~dG~l~~~GR~~d~i~~~G~~  452 (552)
T PRK09274        422 HRM---------GDLGYLDAQGRLWFCGRKAHRVETAGGT  452 (552)
T ss_pred             EEc---------CCEEEEccCCcEEEEeccCCeEEECCEE
Confidence            999         999999999999 999999999999864

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.86  E-value=2.4e-21  Score=156.64  Aligned_cols=109  Identities=23%  Similarity=0.248  Sum_probs=90.4

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCC-CCCCeEEEEEc--CccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLP-HNQPGEICIRG--PQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~-~g~~Gel~i~g--p~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++..++....   .....+++++|+|+++++++|+| ++|++++ +|+.|||+|++  |+++.||    |++++.+.
T Consensus       395 ~TE~~~~~~~~~~---~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy----~~~~~~~~  466 (625)
T TIGR02188       395 QTETGGIMITPLP---GATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTI----YGDHERFV  466 (625)
T ss_pred             ccccCCceeecCC---CCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccc----cCChHHHH
Confidence            5898765443321   11234678999999999999999 7899999 99999999999  6899999    99999888


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.+...      .+|||+|         ||+|++|+||+| |+||+||+||++|..
T Consensus       467 ~~~~~~------~~g~~~T---------GDl~~~d~dG~l~i~GR~dd~i~~~G~r  507 (625)
T TIGR02188       467 DTYFSP------FPGYYFT---------GDGARRDKDGYIWITGRVDDVINVSGHR  507 (625)
T ss_pred             HHHhcc------CCCEEEC---------CceEEEcCCCcEEEEecccCEEEeCCEE
Confidence            877421      3589999         999999999999 999999999998853

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK12467 peptide synthase; Provisional

Probab=99.86  E-value=5.1e-22  Score=183.76  Aligned_cols=117  Identities=16%  Similarity=0.074  Sum_probs=92.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +|||+..++...............++|+|+++++++|+| ++++++|.|++|||+|+|+.+++||    |++|+.|+++|
T Consensus      3386 ~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY----~~~~~~T~~~F 3460 (3956)
T PRK12467       3386 PTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGY----HQRPSLTAERF 3460 (3956)
T ss_pred             cchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhc----cCCcccchhhc
Confidence            699987665543211111123347899999999999999 6799999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..+        +|-  ..+.++|+|||+|++++||+| |+||+|+|||++|..
T Consensus      3461 ~~~--------p~~--~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~r 3503 (3956)
T PRK12467       3461 VAD--------PFS--GSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFR 3503 (3956)
T ss_pred             cCC--------CCC--CCCceeeccchhheecCCCcEEEeccccceEeeceEe
Confidence            733        331  123344445999999999999 999999999999875

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.86  E-value=1.1e-21  Score=170.05  Aligned_cols=119  Identities=16%  Similarity=0.064  Sum_probs=90.0

Q ss_pred             CCCCCcccccccCCCCCC------CCCCCCccccCCCCcEEEEEcCC-CCccCCCCCCeEEEEEcCccccccccccCCCc
Q 032813            1 MTEAGPVLSMCLGFAKQP------FPTKSGSCGTVVRNAELKVIDPE-IGASLPHNQPGEICIRGPQIMKVAELEFWSDG   73 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~------~~~~~~~vG~p~p~~~v~i~d~~-~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~   73 (133)
                      +||++..++.........      ......++|+|+++++++|+|++ .+++++.|++|||+|+||++++||    |++|
T Consensus       564 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY----~~~p  639 (1389)
T TIGR03443       564 TTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGY----LGLP  639 (1389)
T ss_pred             CCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhc----CCCh
Confidence            689886655432211100      01234689999999999999953 357899999999999999999999    9999


Q ss_pred             hhhHHHHhhhhcc--------------------cCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           74 GHDEEIIKLNRLT--------------------MGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        74 ~~t~~~f~~~~~~--------------------~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ++|+++|..+...                    ....++||+|         ||+|++++||+| |+||+|||||++|..
T Consensus       640 ~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~T---------GDlg~~~~dG~l~~~GR~dd~Iki~G~r  710 (1389)
T TIGR03443       640 ELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRT---------GDLGRYLPDGNVECCGRADDQVKIRGFR  710 (1389)
T ss_pred             hHhhhhccCCcccCcccccccccccccccccccCCCccceeec---------CCceeEcCCCCEEEecccCCEEEeCcEE
Confidence            9999999632100                    0012356666         999999999999 999999999999864

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.85  E-value=2.8e-21  Score=151.75  Aligned_cols=105  Identities=18%  Similarity=0.324  Sum_probs=89.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..+....    .....+..++|+|+++++++|+| ++++++++|+.|||+|+|+.++.||    |++++.+.+.+
T Consensus       288 ~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~~  358 (487)
T PRK07638        288 ASELSFVTALVD----EESERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGY----IIGGVLARELN  358 (487)
T ss_pred             CCccCceEEecc----cccCCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeee----cCCHHHHhhhc
Confidence            589876544332    12245667999999999999999 6799999999999999999999999    99988776654


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .+|||+|         ||++++|++|++ ++||++|+||++|.+
T Consensus       359 ---------~~g~~~T---------GDl~~~d~~g~l~i~GR~~d~i~~~G~~  393 (487)
T PRK07638        359 ---------ADGWMTV---------RDVGYEDEEGFIYIVGREKNMILFGGIN  393 (487)
T ss_pred             ---------cCCcEec---------CccEeEcCCCeEEEEecCCCeEEeCCEE
Confidence                     5789999         999999999999 999999999998864

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=99.85  E-value=7e-22  Score=152.91  Aligned_cols=108  Identities=27%  Similarity=0.366  Sum_probs=95.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +|||+++.+++..  .++...+..++|+.+++.+..|+| +.|..+|.|+.||||+||++.|+||    |++++.|.++.
T Consensus       385 ~TEts~v~~~~~~--~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~tMl~Y----wg~~~kT~eti  457 (596)
T KOG1177|consen  385 LTETSPVLFMSLL--GDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGYSTMLGY----WGEEEKTKETI  457 (596)
T ss_pred             ccccCcceeeecC--CCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEEechhheee----cCCcccchhhc
Confidence            6999988777643  344455667999999999999999 7899999999999999999999999    99999999988


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .+.||+|         ||+|.+|++|++ ++||.||||+-+|-+
T Consensus       458 ~--------~drW~~T---------GDi~~m~enG~i~iVGRskdmI~rGGEN  493 (596)
T KOG1177|consen  458 G--------NDRWYDT---------GDIAVMDENGTIEIVGRSKDMIIRGGEN  493 (596)
T ss_pred             c--------cccceec---------CceEEEcCCCcEEEEEcccCeEEeCCcc
Confidence            6        5789998         999999999999 999999999987743

>PRK05691 peptide synthase; Validated

Probab=99.85  E-value=2.2e-21  Score=180.51  Aligned_cols=92  Identities=22%  Similarity=0.287  Sum_probs=81.9

Q ss_pred             CCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCC
Q 032813           23 SGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPG  102 (133)
Q Consensus        23 ~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~  102 (133)
                      ..++|+|+|+++++|+|++++++++.|+.|||||+||++|+||    |++|++|+++|...     +.++||+|      
T Consensus       369 ~~~~G~~~p~~~v~Ivd~~~~~~~~~g~~GEl~v~Gp~v~~GY----~~~~~~T~~~f~~~-----~g~~w~rT------  433 (4334)
T PRK05691        369 LMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGY----WRNPEASAKTFVEH-----DGRTWLRT------  433 (4334)
T ss_pred             eeccCCccCCCEEEEEcCCCCcCCCCCCeEEEEecCCccchhh----cCChhhhHHHhhcC-----CCCceeec------
Confidence            3589999999999999988899999999999999999999999    99999999999521     12359999      


Q ss_pred             CCCCcEEEEcCCCeE-EEeecCCeEEeCCCCC
Q 032813          103 RWAFDLALRTRAGYE-LKKRKKVWVRFDPLFF  133 (133)
Q Consensus       103 ~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~~  133 (133)
                         ||+|+++ ||+| |+||+|||||++|.++
T Consensus       434 ---GDlg~~~-dG~l~i~GR~kd~iki~G~~v  461 (4334)
T PRK05691        434 ---GDLGFLR-DGELFVTGRLKDMLIVRGHNL  461 (4334)
T ss_pred             ---CCeEEEE-CCEEEEEeeecCEEEECCEec
Confidence               9999875 8999 9999999999998753

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.85  E-value=4.1e-21  Score=150.69  Aligned_cols=108  Identities=27%  Similarity=0.440  Sum_probs=90.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.++.....  ......+.+++|+|+|+++++|+| +++++++.|+.|||+|+||+++.||    +++++.+++.|
T Consensus       285 ~TE~~~~~~~~~~--~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY----~~~~~~~~~~~  357 (488)
T PRK09088        285 MSEAGTVFGMSVD--CDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGY----WRRPQATARAF  357 (488)
T ss_pred             ccccccccccCCC--cccccccCCccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhh----cCChhhhhhhh
Confidence            5888764432210  111123567899999999999999 6799999999999999999999999    99999998888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .++||+|         ||+|++|++|++ |+||+||+||++|..
T Consensus       358 ~--------~~g~~~T---------GDl~~~~~~g~l~i~GR~~d~i~~~G~~  393 (488)
T PRK09088        358 T--------GDGWFRT---------GDIARRDADGFFWVVDRKKDMFISGGEN  393 (488)
T ss_pred             c--------CCCCeee---------cceEEEcCCCcEEEeccccceEEeCCEE
Confidence            5        5799999         999999999999 999999999998853

>PRK12316 peptide synthase; Provisional

Probab=99.85  E-value=2.2e-21  Score=181.95  Aligned_cols=117  Identities=17%  Similarity=0.080  Sum_probs=92.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +|||+..++...............++|+|+++++++|+| ++++++|.|++|||+|+|+++++||    |++|+.|+++|
T Consensus      2296 ~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY----~~~p~~T~~~f 2370 (5163)
T PRK12316       2296 PTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGY----LNRPGLTAERF 2370 (5163)
T ss_pred             chhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccc----cCChhhhhhhc
Confidence            689886655433211111112336899999999999999 6799999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..++... ...+||+|         ||+|++++||+| |+||+|||||++|..
T Consensus      2371 ~~~~~~~-~~~~~yrT---------GDl~~~~~dG~l~~~GR~d~~iki~G~r 2413 (5163)
T PRK12316       2371 VPDPFSA-SGERLYRT---------GDLARYRADGVVEYLGRIDHQVKIRGFR 2413 (5163)
T ss_pred             cCCCCCC-CCCeeEec---------ccEEEEcCCCcEEEecCCCCeEEEcCcc
Confidence            7432111 12357777         999999999999 999999999999975

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.85  E-value=3.6e-21  Score=153.90  Aligned_cols=106  Identities=33%  Similarity=0.525  Sum_probs=90.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++....    ......+++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||    |++++.+.+.|
T Consensus       367 ~tE~~~~~~~~~~----~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~t~~~~  437 (562)
T PRK12492        367 LTETSPVASTNPY----GELARLGTVGIPVPGTALKVID-DDGNELPLGERGELCIKGPQVMKGY----WQQPEATAEAL  437 (562)
T ss_pred             ccccCceeeecCC----cccccCCccceecCCCEEEEEC-CCCCCCCCCCceEEEEeCCcccccc----ccCchhhhhcc
Confidence            5888765544321    1123457899999999999999 5789999999999999999999999    99999998888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .++||+|         ||+|++|++|++ |+||+||+||+.|.+
T Consensus       438 ~--------~~g~~~T---------GD~g~~~~~G~l~i~GR~~~~i~~~G~~  473 (562)
T PRK12492        438 D--------AEGWFKT---------GDIAVIDPDGFVRIVDRKKDLIIVSGFN  473 (562)
T ss_pred             c--------CCCceec---------CcEEEECCCCeEEEecccCCeEEECCEE
Confidence            5        4689999         999999999999 999999999998753

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.85  E-value=3.4e-21  Score=153.00  Aligned_cols=84  Identities=20%  Similarity=0.223  Sum_probs=73.5

Q ss_pred             CCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCC
Q 032813           22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEP  101 (133)
Q Consensus        22 ~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~  101 (133)
                      +..++|+|+|+++++|+|++.+.+++.|+.|||+|+|++++.||    |++++.+             .++||+|     
T Consensus       343 ~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY----~~~~~~~-------------~~~~~~T-----  400 (525)
T PRK05851        343 RHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGY----LGQAPID-------------PDDWFPT-----  400 (525)
T ss_pred             eeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhcc----ccCCccC-------------CCCceec-----
Confidence            45689999999999999965456789999999999999999999    8888642             3589999     


Q ss_pred             CCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          102 GRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       102 ~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                          ||+|+++ +|+| |+||+||+||++|.+
T Consensus       401 ----GDl~~~~-~G~l~~~GR~dd~i~~~G~~  427 (525)
T PRK05851        401 ----GDLGYLV-DGGLVVCGRAKELITVAGRN  427 (525)
T ss_pred             ----cceEEEE-CCEEEEEeecCCEEEECCEE
Confidence                9999997 7999 999999999998864

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.85  E-value=5.8e-21  Score=151.62  Aligned_cols=109  Identities=21%  Similarity=0.328  Sum_probs=90.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCC-CCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~-p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~   79 (133)
                      +||++..++....  .........++|.|+ +++.++|+|++++++++.|+.|||||+|++++.||    |++++.+++.
T Consensus       328 ~tE~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~t~~~  401 (540)
T PRK06164        328 SSEVQALVALQPA--TDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGY----LDNPDATARA  401 (540)
T ss_pred             eccccceeeccCC--CCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccc----cCCchhhhhc
Confidence            5888765554321  111123345678876 88999999988899999999999999999999999    9999999998


Q ss_pred             HhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           80 IKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        80 f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |.        .++||+|         ||+|++|++|++ ++||.||+||++|..
T Consensus       402 ~~--------~~~~~~T---------GDl~~~~~~g~l~~~GR~~~~i~~~G~~  438 (540)
T PRK06164        402 LT--------DDGYFRT---------GDLGYTRGDGQFVYQTRMGDSLRLGGFL  438 (540)
T ss_pred             cc--------CCCceec---------CCeEEEcCCceEEEEeecCCeEEECCEE
Confidence            86        5689999         999999999999 999999999999864

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.85  E-value=6.8e-21  Score=152.22  Aligned_cols=109  Identities=26%  Similarity=0.426  Sum_probs=89.5

Q ss_pred             CCCCCcccccccCCCCC--CCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQ--PFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~--~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~   78 (133)
                      +||++..++........  .....+.++|+|+|+++++|+|++++++++.|++|||+|+|++++.||    |++++.+++
T Consensus       362 ~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY----~~~~~~~~~  437 (567)
T PRK06178        362 MTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGY----WNKPEATAE  437 (567)
T ss_pred             cccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccc----cCChhhhhh
Confidence            57876544432211111  112345689999999999999977899999999999999999999999    999999888


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .|         .+|||+|         ||+++++++|++ |+||+||+||++|.
T Consensus       438 ~~---------~dg~~~T---------GDl~~~~~~g~l~i~GR~~d~i~~~G~  473 (567)
T PRK06178        438 AL---------RDGWLHT---------GDIGKIDEQGFLHYLGRRKEMLKVNGM  473 (567)
T ss_pred             cc---------cCCceee---------cceEEEecCCeEEEEecccccEEECCE
Confidence            77         3689999         999999999999 99999999999875

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.84  E-value=3.5e-21  Score=153.41  Aligned_cols=90  Identities=30%  Similarity=0.566  Sum_probs=82.6

Q ss_pred             CCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCC
Q 032813           22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEP  101 (133)
Q Consensus        22 ~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~  101 (133)
                      ...++|+|+|+++++|+|++++++++.|+.|||+|+|++++.||    +++++.+++.|.        .++||+|     
T Consensus       359 ~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy----~~~~~~~~~~~~--------~~g~~~T-----  421 (546)
T PLN02330        359 KKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGY----YNNKEETDRTID--------EDGWLHT-----  421 (546)
T ss_pred             ccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhh----ccCccchhhhcc--------CCCceec-----
Confidence            44689999999999999977789999999999999999999999    999999888775        5789999     


Q ss_pred             CCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          102 GRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       102 ~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                          ||+|++++||++ ++||.+|+||++|..
T Consensus       422 ----GD~~~~~~dG~l~~~GR~~d~i~~~G~~  449 (546)
T PLN02330        422 ----GDIGYIDDDGDIFIVDRIKELIKYKGFQ  449 (546)
T ss_pred             ----ccEEEEeCCCcEEEEechHHhhhcCCEE
Confidence                999999999999 999999999998853

>PRK12316 peptide synthase; Provisional

Probab=99.84  E-value=3e-21  Score=181.02  Aligned_cols=113  Identities=16%  Similarity=0.075  Sum_probs=93.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +|||+..++.....   .......++|+|+++++++|+| +.++++|.|++|||+|+|+.+++||    +++|++|+++|
T Consensus      3343 ~TE~~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY----~~~~~~t~~~f 3414 (5163)
T PRK12316       3343 PTEATITVTHWQCV---EEGKDAVPIGRPIANRACYILD-GSLEPVPVGALGELYLGGEGLARGY----HNRPGLTAERF 3414 (5163)
T ss_pred             CCccEeeEeEEecc---CCCCCCCccceecCCCEEEEEC-CCCCCCCCCCCceEEecccccchhc----CCChhhchhhC
Confidence            68998766654321   1233457999999999999999 6899999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..++.  ....+||+|         ||+|++++||.| |+||+|+|||++|..
T Consensus      3415 ~~~p~--~~~~~~y~T---------GDl~~~~~dG~l~~~GR~d~qvKi~G~r 3456 (5163)
T PRK12316       3415 VPDPF--VPGERLYRT---------GDLARYRADGVIEYIGRVDHQVKIRGFR 3456 (5163)
T ss_pred             CCCCC--CCCCeeEec---------CceEEECCCCCEEEecccCCeEeeCcEe
Confidence            74432  113357777         999999999999 999999999999863

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.84  E-value=7.1e-21  Score=151.35  Aligned_cols=101  Identities=26%  Similarity=0.352  Sum_probs=86.2

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcC--ccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP--QIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp--~~~~GY~~~~~~~~~~t~~   78 (133)
                      |||++.+.....+      ..+.++.|+|+||+++.|+|+ +|+++++++ |+|+|+.|  +++++|    |+||+++.+
T Consensus       324 qTEtg~~~~~~~~------~~~~g~~g~p~pG~~~~vvdd-~g~~~~~~~-G~Lvi~~~~p~~~~~~----w~d~er~~~  391 (528)
T COG0365         324 QTETGMGFIAGRP------PVKNGSSGLPLPGYAVRRVDD-EGNPVPPGV-GELVVRLPWPGMALTY----WNDPERYKE  391 (528)
T ss_pred             ccccCccccCCCC------CcCCCCCCCCCCCceeEEECC-CCCcCCCCc-eEEEEeCCCchhhhhh----hCCHHHHHH
Confidence            7999854443321      345566699999999999995 599999999 99999986  899999    999999999


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      +|.         +.||.|         ||.+++|+||++ |+||.||+||+.|.
T Consensus       392 ~y~---------~~~y~t---------GD~~~~DedGy~~i~GR~DDvI~vsG~  427 (528)
T COG0365         392 AYF---------GRWYRT---------GDWAERDEDGYFWLHGRSDDVIKVSGK  427 (528)
T ss_pred             HHh---------hceeec---------CceeEEccCCCEEEEeeccceEeccCe
Confidence            986         238888         999999999999 99999999999885

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.84  E-value=9.6e-21  Score=148.47  Aligned_cols=106  Identities=32%  Similarity=0.427  Sum_probs=89.4

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...   ......+.+++|+|+++++++|+| ++++.++.|+.|||+|+|++++.||    |++++.++..+
T Consensus       297 ~tE~~~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~~  368 (496)
T PRK06839        297 MTETSPTVFMLS---EEDARRKVGSIGKPVLFCDYELID-ENKNKVEVGEVGELLIRGPNVMKEY----WNRPDATEETI  368 (496)
T ss_pred             CCCCCcceEecc---cccccccCCCCcccCCCceEEEEC-CCcCCCCCCCceEEEEECCCcchhh----cCChHHHHHHH
Confidence            588876443322   112234568999999999999999 4678899999999999999999999    99999998887


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .+|||+|         ||++++|++|++ ++||.+|+||++|..
T Consensus       369 ---------~~g~~~T---------GDl~~~~~~g~~~~~GR~~d~i~~~G~~  403 (496)
T PRK06839        369 ---------QDGWLCT---------GDLARVDEDGFVYIVGRKKEMIISGGEN  403 (496)
T ss_pred             ---------cCCCeee---------cceEEEcCCCcEEEeccccceEEECCEE
Confidence                     4689999         999999999999 999999999998853

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.84  E-value=7.9e-21  Score=152.14  Aligned_cols=105  Identities=25%  Similarity=0.400  Sum_probs=89.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEc--CccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG--PQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~g--p~~~~GY~~~~~~~~~~t~~   78 (133)
                      +||++..++....    .....++++|+|+|+++++|+| +++.++++|+.|||+|++  |+++.||    |++++.+++
T Consensus       357 ~tE~~~~~~~~~~----~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY----~~~~~~~~~  427 (570)
T PRK04319        357 MTETGGIMIANYP----AMDIKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGI----WNNPEKYES  427 (570)
T ss_pred             ecccCCEEEecCC----CCCCCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHh----cCCHHHhhh
Confidence            5898765443221    1134567999999999999999 578899999999999997  8999999    999999999


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .|.         +|||+|         ||+++++++|++ ++||+||+||++|..
T Consensus       428 ~~~---------~gw~~T---------GDl~~~~~~g~l~~~GR~~d~i~~~G~~  464 (570)
T PRK04319        428 YFA---------GDWYVS---------GDSAYMDEDGYFWFQGRVDDVIKTSGER  464 (570)
T ss_pred             hhc---------CCceEe---------CcEEEECCCeeEEEEecCCCEEEECCEE
Confidence            883         689999         999999999999 999999999998853

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.84  E-value=1.3e-20  Score=148.10  Aligned_cols=105  Identities=29%  Similarity=0.418  Sum_probs=89.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++....   .......+++|+|+++++++|+| +++++++.|+.|||+++|++++.||    |++++.+++.|
T Consensus       299 ~tE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy----~~~~~~~~~~~  370 (497)
T PRK06145        299 LTETCSGDTLMEA---GREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGY----WKDPEKTAEAF  370 (497)
T ss_pred             CcccCCcceeccC---ccccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhh----cCChHHHHHHH
Confidence            5888765443321   11123457899999999999999 5789999999999999999999999    99999999988


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .         ++||+|         ||++++|++|++ ++||+||+||++|.
T Consensus       371 ~---------~~~~~T---------GDl~~~~~~g~l~~~GR~~~~i~~~G~  404 (497)
T PRK06145        371 Y---------GDWFRS---------GDVGYLDEEGFLYLTDRKKDMIISGGE  404 (497)
T ss_pred             h---------CCCeec---------cceEEEcCCCcEEEeccccceEEeCCe
Confidence            3         689999         999999999999 99999999999885

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.84  E-value=6.1e-21  Score=156.39  Aligned_cols=102  Identities=21%  Similarity=0.277  Sum_probs=84.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..+....     ....+.+++|+|+++++++|+| ++++++++|+.|||+|+|++++.||    |++|+.+.   
T Consensus       295 ~tE~~~~~~~~~-----~~~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY----~~~~~~~~---  361 (705)
T PRK06060        295 STEVGQTFVSNR-----VDEWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGY----WNRPDSPV---  361 (705)
T ss_pred             ccccCceEEecc-----CCCCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhh----hCCCcccc---
Confidence            588875443321     1123467899999999999999 5799999999999999999999999    99987642   


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .++||+|         ||+|++++||+| |+||+||+||++|..
T Consensus       362 ~--------~~~~~~T---------GDl~~~~~dG~l~~~GR~dd~ik~~G~~  397 (705)
T PRK06060        362 A--------NEGWLDT---------RDRVCIDSDGWVTYRCRADDTEVIGGVN  397 (705)
T ss_pred             c--------CCCcEEC---------CeeEEECCCceEEEecccCceEEECCEE
Confidence            1        3689999         999999999999 999999999999864

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.84  E-value=1.7e-20  Score=152.04  Aligned_cols=113  Identities=21%  Similarity=0.246  Sum_probs=87.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcC---ccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP---QIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp---~~~~GY~~~~~~~~~~t~   77 (133)
                      |||++..++..... ......+.+++|+|+|+++++|+|+++|++++.|+.|||+|+||   +++.||    |++++.+.
T Consensus       388 ~TE~~~~~~~~~~~-~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~----~~~~~~~~  462 (628)
T TIGR02316       388 QTETGWPVLAIMPG-LDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTV----WGDDARFL  462 (628)
T ss_pred             ccccCceeecCCCC-CCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccc----cCChHHHH
Confidence            68987544332211 11123456889999999999999965799999999999999998   345666    99998877


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.+...   .  .++||+|         ||+|++|+||+| |+||+|||||+.|..
T Consensus       463 ~~~~~~---~--~~~~~~T---------GD~g~~d~dG~l~i~GR~dd~ik~~G~r  504 (628)
T TIGR02316       463 KTYWSH---F--KRPLYSS---------FDWGIRDEDGYTFILGRTDDVINVAGHR  504 (628)
T ss_pred             Hhhhhc---C--CCCEEEC---------CceEEEcCCCcEEEEEcCcceEEeCCEE
Confidence            765311   1  3578888         999999999999 999999999999863

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.84  E-value=8.3e-21  Score=151.26  Aligned_cols=109  Identities=18%  Similarity=0.271  Sum_probs=85.4

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCc-cC-----CCCCCeEEEEEcCccccccccccCCCch
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGA-SL-----PHNQPGEICIRGPQIMKVAELEFWSDGG   74 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~-~~-----~~g~~Gel~i~gp~~~~GY~~~~~~~~~   74 (133)
                      +||++..+.............+.+++|+|+++++++|+|+ ++. ++     +.++.|||+|+||+++.||    |++++
T Consensus       319 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~-~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY----~~~~~  393 (540)
T PRK05857        319 LSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAAT-DGIGPTAPGAGPSASFGTLWIKSPANMLGY----WNNPE  393 (540)
T ss_pred             CCcCCceeeecccccccccccccCCcCcccCCcEEEEECc-cccCccccccCCCCCcceEEEeCcchhhhh----hCCcc
Confidence            6898754332211100001234679999999999999995 444 33     4578999999999999999    99999


Q ss_pred             hhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           75 HDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        75 ~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .+++.|         .+|||+|         ||+|++|++|+| ++||.||+||++|..
T Consensus       394 ~t~~~~---------~~g~~~T---------GDlg~~d~~g~l~~~GR~~~~ik~~G~~  434 (540)
T PRK05857        394 RTAEVL---------IDGWVNT---------GDLLERREDGFFYIKGRSSEMIICGGVN  434 (540)
T ss_pred             chhhhc---------CCCceec---------cceEEEcCCceEEEeccccccEecCCEE
Confidence            999888         3689999         999999999999 999999999998853

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.84  E-value=6.9e-21  Score=163.93  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=92.6

Q ss_pred             CCCCCcccccccCCCCC--CCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQ--PFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~--~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~   78 (133)
                      +||++..++........  .......++|+|+++++++|+| +.+++++.|+.|||+|+|+++++||    +++|+.|++
T Consensus       751 ~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY----~~~~~~t~~  825 (1296)
T PRK10252        751 PTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGY----LGRPDLTAS  825 (1296)
T ss_pred             cchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhh----CCCcccchh
Confidence            58987655544321111  0123456899999999999999 6899999999999999999999999    999999999


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +|..++..  ...+||+|         ||+|++++||+| |+||+|++||++|..
T Consensus       826 ~f~~~~~~--~~~~~y~T---------GDl~~~~~~G~l~~~GR~d~~ik~~G~r  869 (1296)
T PRK10252        826 RFIADPFA--PGERMYRT---------GDVARWLDDGAVEYLGRSDDQLKIRGQR  869 (1296)
T ss_pred             hcccCCCC--CCCEEEec---------CceEEEcCCCcEEEecccCCeEEEeeEE
Confidence            99743221  12357777         999999999999 999999999999863

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.83  E-value=1.7e-20  Score=147.39  Aligned_cols=105  Identities=28%  Similarity=0.360  Sum_probs=90.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...     .......++|.|+++++++|+|++++++++.|+.|||+|+|++++.||    +++++.+++.|
T Consensus       303 ~tE~~~~~~~~~-----~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy----~~~~~~~~~~~  373 (504)
T PRK07514        303 MTETNMNTSNPY-----DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGY----WRMPEKTAEEF  373 (504)
T ss_pred             cccccccccCCc-----cccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccc----cCCchhhhhhc
Confidence            578765433211     122345789999999999999988899999999999999999999999    99999999888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .        .++||+|         ||+++++++|++ ++||+||+||++|.
T Consensus       374 ~--------~~~~~~T---------GDl~~~~~~g~~~~~GR~~~~i~~~G~  408 (504)
T PRK07514        374 R--------ADGFFIT---------GDLGKIDERGYVHIVGRGKDLIISGGY  408 (504)
T ss_pred             c--------cCCCeee---------cceEEEcCCccEEEeccccceEEeCCe
Confidence            5        4689999         999999999999 99999999999885

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.83  E-value=1.6e-20  Score=149.82  Aligned_cols=106  Identities=28%  Similarity=0.500  Sum_probs=90.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++....    .......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||    |++++.+.+.|
T Consensus       361 ~tE~~~~~~~~~~----~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~~~~~~  431 (557)
T PRK07059        361 LSETSPVATCNPV----DATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGY----WNRPDETAKVM  431 (557)
T ss_pred             cccccchhhcCCC----CCCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhh----hcCHHHHhhhc
Confidence            6898765544321    1123457899999999999999 6799999999999999999999999    99999998887


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .+|||+|         ||+++++++|++ ++||++|+||++|..
T Consensus       432 ~--------~~g~~~T---------GDl~~~~~~g~~~~~GR~~~~i~~~G~~  467 (557)
T PRK07059        432 T--------ADGFFRT---------GDVGVMDERGYTKIVDRKKDMILVSGFN  467 (557)
T ss_pred             c--------cCCceec---------CcEEEEcCCCcEEEecccccceEECCEE
Confidence            5        5799999         999999999999 999999999998853

>PRK12467 peptide synthase; Provisional

Probab=99.83  E-value=9.9e-21  Score=175.37  Aligned_cols=117  Identities=15%  Similarity=0.051  Sum_probs=92.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...............++|+|+++++++|+| ++++++|.|++|||+|+|+++++||    +++|+.|+++|
T Consensus      1869 ~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~GY----l~~p~~t~~~f 1943 (3956)
T PRK12467       1869 PTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGY----LNRPALTAERF 1943 (3956)
T ss_pred             CCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEeccccccccc----cCChhhhhhhC
Confidence            589986655433211111123357899999999999999 6899999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..++.. ....+||+|         ||+|++++||+| |+||+|||||++|..
T Consensus      1944 ~~~p~~-~~~~r~yrT---------GDl~~~~~dG~l~~~GR~D~qVki~G~r 1986 (3956)
T PRK12467       1944 VADPFG-TVGSRLYRT---------GDLARYRADGVIEYLGRIDHQVKIRGFR 1986 (3956)
T ss_pred             cCCCCC-CCCccceec---------cceEEECCCCCEEEecccCceEEeCeEE
Confidence            743221 112346666         999999999999 999999999999863

>PRK08315 AMP-binding domain protein; Validated

Probab=99.83  E-value=1.3e-20  Score=149.94  Aligned_cols=108  Identities=31%  Similarity=0.559  Sum_probs=90.4

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++....  ......+..++|+|+|+++++|+|++++++++.|+.|||+|+|++++.||    |++|+.+++.|
T Consensus       350 ~tE~~~~~~~~~~--~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy----~~~~~~~~~~~  423 (559)
T PRK08315        350 MTETSPVSTQTRT--DDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGY----WNDPEKTAEAI  423 (559)
T ss_pred             ccccccceeecCc--ccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhh----cCChhHHhhcC
Confidence            5788765443321  11122356799999999999999976699999999999999999999999    99999888877


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .        .++||+|         ||++++|++|++ |+||.||+||++|.
T Consensus       424 ~--------~~~~~~T---------GD~~~~~~dg~~~~~GR~d~~i~~~G~  458 (559)
T PRK08315        424 D--------ADGWMHT---------GDLAVMDEEGYVNIVGRIKDMIIRGGE  458 (559)
T ss_pred             C--------CCCCEEc---------cceEEEcCCceEEEEeeccceEEECCE
Confidence            4        4689999         999999999999 99999999999875

>PRK07529 AMP-binding domain protein; Validated

Probab=99.83  E-value=1.4e-20  Score=152.78  Aligned_cols=105  Identities=25%  Similarity=0.329  Sum_probs=85.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEE--cCCCC---ccCCCCCCeEEEEEcCccccccccccCCCchh
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVI--DPEIG---ASLPHNQPGEICIRGPQIMKVAELEFWSDGGH   75 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~--d~~~g---~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~   75 (133)
                      +||++.+++....    ....+.+++|+|+|+++++|+  | +++   +++++|+.|||+|+||+++.||    ++++ .
T Consensus       367 ~TE~~~~~~~~~~----~~~~~~~svG~~~p~~~v~i~~~d-~~g~~~~~~~~g~~Gel~v~gp~v~~GY----~~~~-~  436 (632)
T PRK07529        367 LTEATCVSSVNPP----DGERRIGSVGLRLPYQRVRVVILD-DAGRYLRDCAVDEVGVLCIAGPNVFSGY----LEAA-H  436 (632)
T ss_pred             ccccCcccccCCc----cccccCCCcccccCCceEEEEEcC-CCCcccccCCCCCceEEEEECCCccccc----cCCc-c
Confidence            6898866554321    123467899999999999985  5 456   7899999999999999999999    7765 4


Q ss_pred             hHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           76 DEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        76 t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.+.|.        .++||+|         ||+|++|+||+| |+||+||+||++|.+
T Consensus       437 ~~~~~~--------~~gw~~T---------GDlg~~d~dG~l~i~GR~~d~i~~~G~~  477 (632)
T PRK07529        437 NKGLWL--------EDGWLNT---------GDLGRIDADGYFWLTGRAKDLIIRGGHN  477 (632)
T ss_pred             cccccc--------CCCceEc---------CcEEEEcCCceEEEEecccCEEEeCCEE
Confidence            445553        4689999         999999999999 999999999999864

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.83  E-value=2e-20  Score=147.97  Aligned_cols=113  Identities=18%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCC--CCeEEEEEcCcc--ccccccccCCCchhh
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHN--QPGEICIRGPQI--MKVAELEFWSDGGHD   76 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g--~~Gel~i~gp~~--~~GY~~~~~~~~~~t   76 (133)
                      |||++..++....    ....+.+++|+|+++++++|+| +++++++.|  ++|||+|+||.+  +.||    |+++ .+
T Consensus       272 ~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy----~~~~-~~  341 (499)
T PLN03051        272 GTELASGYISSTL----LQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRL----LNAD-HD  341 (499)
T ss_pred             cccccceeecccc----cCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccc----cCCc-cc
Confidence            6897643332211    1123467899999999999999 679999988  479999999976  5799    8765 33


Q ss_pred             HHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           77 EEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        77 ~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      + .|. +      ...|+. ....++|+|||+|++|+||+| |+||+|||||+.|.+
T Consensus       342 ~-~~~-~------g~~~~~-~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~  389 (499)
T PLN03051        342 K-VYY-K------GMPMYG-SKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIK  389 (499)
T ss_pred             c-eee-e------cCCccc-cCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEE
Confidence            2 332 1      011221 112233334999999999999 999999999999864

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.83  E-value=1.7e-20  Score=150.16  Aligned_cols=82  Identities=23%  Similarity=0.347  Sum_probs=75.2

Q ss_pred             CccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCC
Q 032813           24 GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGR  103 (133)
Q Consensus        24 ~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~  103 (133)
                      .++|+|+|+++++|++++      +|+.|||+|+||+++.||    |++|+.+++.|.        .+|||+|       
T Consensus       364 ~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY----~~~~~~t~~~~~--------~~g~~~T-------  418 (563)
T PLN02860        364 VCVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGY----WGQNSETASVLS--------NDGWLDT-------  418 (563)
T ss_pred             cccCCccCCcEEEEecCC------CCceeEEEEecCcccccc----cCCccccchhcc--------CCCeEEc-------
Confidence            479999999999999843      688999999999999999    999999998885        5799999       


Q ss_pred             CCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          104 WAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       104 ~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                        ||+|++|++|+| |+||+||+||++|.+
T Consensus       419 --GDl~~~d~dG~l~~~GR~~d~i~~~G~~  446 (563)
T PLN02860        419 --GDIGWIDKAGNLWLIGRSNDRIKTGGEN  446 (563)
T ss_pred             --cceEEEcCCCCEEEeecccceeEECCEE
Confidence              999999999999 999999999999864

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.83  E-value=2.7e-20  Score=146.58  Aligned_cols=107  Identities=21%  Similarity=0.228  Sum_probs=88.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.++....    .......+++|+|+++ .++|+| ++++++++|++|||+|++++++.||    |++|+.+++.|
T Consensus       304 ~tE~~~~~~~~~----~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~t~~~~  373 (501)
T PRK13390        304 STEAHGMTFIDS----PDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRY----LNDPEKTAAAQ  373 (501)
T ss_pred             ccccCceEEecc----hhhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccc----cCChhhhHHhh
Confidence            578765433221    1112346789999999 799999 6799999999999999999999999    99999999887


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ...      .++|++|         ||+|++|++|++ ++||.||+||++|..
T Consensus       374 ~~~------~~~w~~t---------GDl~~~~~dg~l~~~gR~~~~i~~~G~~  411 (501)
T PRK13390        374 HPA------HPFWTTV---------GDLGSVDEDGYLYLADRKSFMIISGGVN  411 (501)
T ss_pred             ccC------CCceEEc---------CceEEECCCCeEEEeeccccceeECCee
Confidence            421      2579999         999999999999 999999999999864

>PRK05691 peptide synthase; Validated

Probab=99.83  E-value=1.6e-20  Score=174.75  Aligned_cols=115  Identities=17%  Similarity=0.086  Sum_probs=92.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +|||+..+++.... .........++|+|+++++++|+| +.++++|.|.+|||+|+|+.+++||    +++|++|+++|
T Consensus      4018 ~TE~t~~~~~~~~~-~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY----~~~~~~t~~~f 4091 (4334)
T PRK05691       4018 PAECSDDVAFFRVD-LASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGY----VGDPLRTALAF 4091 (4334)
T ss_pred             CccceeEEEEEEcc-cccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccc----cCCcccchhhc
Confidence            58998766654321 111122346899999999999999 7899999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .+++... ...+||+|         ||++++++||+| |+||+|+|||++|.
T Consensus      4092 ~~~p~~~-~~~~~yrT---------GDl~~~~~dG~l~~~GR~d~qvki~G~ 4133 (4334)
T PRK05691       4092 VPHPFGA-PGERLYRT---------GDLARRRSDGVLEYVGRIDHQVKIRGY 4133 (4334)
T ss_pred             ccCCCCC-CCceeecc---------CcceeecCCCcEEEecccCCcEEeceE
Confidence            8543211 12345555         999999999999 99999999999986

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.82  E-value=3.4e-20  Score=146.41  Aligned_cols=105  Identities=22%  Similarity=0.239  Sum_probs=89.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEc---CccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG---PQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~g---p~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++..++....    .......++|+|+++++++|+| +++++++.|+.|||+++|   ++++.||    |++++.++
T Consensus       321 ~tE~~~~~~~~~~----~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy----~~~~~~~~  391 (517)
T PRK08008        321 MTETIVGIIGDRP----GDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEY----YLDPKATA  391 (517)
T ss_pred             ccccccccccCCc----cccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhH----hCChHHHh
Confidence            5888754443321    1123457899999999999999 679999999999999997   6899999    99999999


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      +.|.        .+|||+|         ||+|++|++|++ ++||+||+||++|.
T Consensus       392 ~~~~--------~~g~~~T---------GDl~~~~~~g~~~~~GR~~d~i~~~G~  429 (517)
T PRK08008        392 KVLE--------ADGWLHT---------GDTGYVDEEGFFYFVDRRCNMIKRGGE  429 (517)
T ss_pred             hccc--------CCCCeec---------cceEEECCCCcEEEeecccceEEeCCE
Confidence            9886        5789999         999999999999 99999999999874

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.82  E-value=2.2e-20  Score=148.76  Aligned_cols=102  Identities=17%  Similarity=0.151  Sum_probs=84.2

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..+....    .+....+.++|+|+++++++|+| +++++++.|+.|||+|+|++++.||    +++++.  + +
T Consensus       357 ~TE~~~~~~~~~----~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~--~-~  424 (549)
T PRK07788        357 STEVAFATIATP----EDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGY----TDGRDK--Q-I  424 (549)
T ss_pred             cchhchhhccCh----hhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccc----cCCCcc--c-c
Confidence            589875443321    11224567899999999999999 6799999999999999999999999    887765  1 1


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .+|||+|         ||++++|++|++ |+||+||+||++|.+
T Consensus       425 ---------~~g~~~T---------GDl~~~~~~g~l~~~GR~dd~i~~~G~~  459 (549)
T PRK07788        425 ---------IDGLLSS---------GDVGYFDEDGLLFVDGRDDDMIVSGGEN  459 (549)
T ss_pred             ---------cCCceec---------CceEEEcCCCCEEEeccCcceEEECCEE
Confidence                     3589999         999999999999 999999999999863

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.82  E-value=4e-20  Score=146.89  Aligned_cols=108  Identities=21%  Similarity=0.259  Sum_probs=85.6

Q ss_pred             CCCCCcccccccCCC---CCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFA---KQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~---~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++..++......   ........+.+|+ .++++++|+| ++++++++|+.|||+|+|+.+++||    |++++.++
T Consensus       329 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY----~~~~~~t~  402 (534)
T PRK05852        329 MTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGY----LGDPTITA  402 (534)
T ss_pred             ccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchh----cCCcccch
Confidence            588876554332100   0001112334444 6999999999 5789999999999999999999999    99999999


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.|         .++||+|         ||+|++|+||++ +.||++|+||++|..
T Consensus       403 ~~~---------~~g~~~T---------GD~~~~d~dG~l~~~gR~~d~i~~~G~~  440 (534)
T PRK05852        403 ANF---------TDGWLRT---------GDLGSLSAAGDLSIRGRIKELINRGGEK  440 (534)
T ss_pred             hhh---------cCCCccc---------CceEEEeCCCcEEEEecchhhEEECCEE
Confidence            988         4689999         999999999999 999999999998853

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.82  E-value=5.1e-20  Score=145.06  Aligned_cols=106  Identities=29%  Similarity=0.428  Sum_probs=90.7

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++...   ........+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||    +++++.+++.|
T Consensus       321 ~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y----~~~~~~~~~~~  392 (523)
T PRK08316        321 QTEIAPLATVLG---PEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGY----WDDPEKTAEAF  392 (523)
T ss_pred             ccccCccccccC---ccccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhh----cCCHHHHHHHh
Confidence            588876555432   112234567999999999999999 5799999999999999999999999    99999999888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .++||+|         ||+|++++||.+ ++||.||+||++|..
T Consensus       393 ---------~~~~~~T---------GDl~~~~~~g~l~i~gR~~~~i~~~G~~  427 (523)
T PRK08316        393 ---------RGGWFHS---------GDLGVMDEEGYITVVDRKKDMIKTGGEN  427 (523)
T ss_pred             ---------hCCCeec---------cceEEEcCCceEEEecccccEEEeCCeE
Confidence                     4699999         999999999999 999999999998853

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.82  E-value=6.1e-20  Score=146.43  Aligned_cols=103  Identities=23%  Similarity=0.268  Sum_probs=89.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcC---ccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP---QIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp---~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++.+++...      .....+++|.|+++++++|+| +++++++.|+.|||+|+++   +++.||    +++++.+.
T Consensus       326 ~tE~~~~~~~~~------~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY----~~~~~~~~  394 (542)
T PRK06155        326 STETNFVIAVTH------GSQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGY----FGMPEKTV  394 (542)
T ss_pred             ccccCccccCCC------CCCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhh----cCCHHHHH
Confidence            589876554321      134567899999999999999 5799999999999999998   699999    99999998


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.|         .++||+|         ||+|++++||++ |+||+||+||++|..
T Consensus       395 ~~~---------~~~~~~T---------GD~~~~~~dG~l~i~GR~~d~i~~~G~~  432 (542)
T PRK06155        395 EAW---------RNLWFHT---------GDRVVRDADGWFRFVDRIKDAIRRRGEN  432 (542)
T ss_pred             Hhh---------cCCcEec---------cceEEEcCCceEEEEecCCCEEEeCCEE
Confidence            888         4799999         999999999999 999999999999863

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.82  E-value=3.5e-20  Score=147.45  Aligned_cols=90  Identities=21%  Similarity=0.265  Sum_probs=82.6

Q ss_pred             CCCCccccCC-CCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccC
Q 032813           21 TKSGSCGTVV-RNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQA   99 (133)
Q Consensus        21 ~~~~~vG~p~-p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~   99 (133)
                      ....++|+|+ |++.++|+| +++++++.|+.|||+|+|+.++.||    |++++.+++.|.        .++||+|   
T Consensus       350 ~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY----~~~~~~t~~~~~--------~d~~~~T---  413 (536)
T PRK10946        350 RIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGY----YKSPQHNASAFD--------ANGFYCS---  413 (536)
T ss_pred             cccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhh----cCCcccchhhcc--------cCCceec---
Confidence            3457899999 799999999 6799999999999999999999999    999999999886        5789999   


Q ss_pred             CCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          100 EPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       100 ~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                            ||+|++|++|++ ++||.+|+||++|..
T Consensus       414 ------GDl~~~d~~G~l~~~gR~~d~i~~~G~~  441 (536)
T PRK10946        414 ------GDLVSIDPDGYITVVGREKDQINRGGEK  441 (536)
T ss_pred             ------CceEEECCCCcEEEeccccceeecCCEE
Confidence                  999999999999 999999999998853

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.82  E-value=5.3e-20  Score=145.79  Aligned_cols=109  Identities=19%  Similarity=0.320  Sum_probs=90.0

Q ss_pred             CCCCCcccccccCCC---CCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFA---KQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~---~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++..++......   ........+++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||    |++++.++
T Consensus       314 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy----~~~~~~~~  388 (528)
T PRK07470        314 LGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGY----YNNPEANA  388 (528)
T ss_pred             CcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhh----cCCHHHHH
Confidence            588876554432110   000123457899999999999999 5799999999999999999999999    99999998


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.|         .++||+|         ||+++++++|++ ++||+||+||++|..
T Consensus       389 ~~~---------~~~~~~T---------GDl~~~~~~g~l~~~GR~dd~i~~~G~~  426 (528)
T PRK07470        389 KAF---------RDGWFRT---------GDLGHLDARGFLYITGRASDMYISGGSN  426 (528)
T ss_pred             hhh---------cCCcEec---------ceeEEEccCCeEEEeCCccceEEeCCEE
Confidence            888         4689999         999999999999 999999999999863

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.82  E-value=6.2e-20  Score=143.60  Aligned_cols=105  Identities=24%  Similarity=0.330  Sum_probs=88.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...   ........+++|+|+++++++|++ + +++++.|+.|||+|+||.++.||    +++++.++..|
T Consensus       287 ~tE~~~~~~~~~---~~~~~~~~~~vG~p~~~~~~~i~~-~-~~~~~~g~~Gel~v~g~~~~~gy----~~~~~~~~~~~  357 (483)
T PRK03640        287 MTETASQIVTLS---PEDALTKLGSAGKPLFPCELKIEK-D-GVVVPPFEEGEIVVKGPNVTKGY----LNREDATRETF  357 (483)
T ss_pred             cCcccccccccC---cccccccCCCcccccCCcEEEEec-C-CCcCCCCCceEEEEECcchhhhh----cCCHHHHHHHH
Confidence            578765433322   111234568999999999999998 3 58999999999999999999999    99999999888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .++||+|         ||++++++||++ ++||+||+||++|..
T Consensus       358 ---------~~~~~~t---------GDl~~~~~~g~l~~~GR~~~~i~~~G~~  392 (483)
T PRK03640        358 ---------QDGWFKT---------GDIGYLDEEGFLYVLDRRSDLIISGGEN  392 (483)
T ss_pred             ---------hcCCeec---------cceEEEcCCCCEEEeecccCeEEeCCEE
Confidence                     3689999         999999999999 999999999998863

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.81  E-value=7.7e-20  Score=145.23  Aligned_cols=109  Identities=24%  Similarity=0.260  Sum_probs=90.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..+.....     ......++|+|+++++++|+|++++++++.|+.|||+|+|++++.||    +++++.+++.|
T Consensus       339 ~tE~~~~~~~~~~-----~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~t~~~f  409 (546)
T PRK08314        339 LTETMAQTHSNPP-----DRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGY----WNRPEATAEAF  409 (546)
T ss_pred             ccccccceecCCC-----cCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccc----cCChhHhhhhh
Confidence            5888765443321     12345789999999999999977899999999999999999999999    99999998888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ...     ...+||+|         ||+|+++++|+| ++||+||+||++|..
T Consensus       410 ~~~-----~~~~~~~T---------GDl~~~~~~g~l~~~GR~~d~i~~~G~~  448 (546)
T PRK08314        410 IEI-----DGKRFFRT---------GDLGRMDEEGYFFITDRLKRMINASGFK  448 (546)
T ss_pred             hhc-----CCCceEec---------CCEEEEcCCCcEEEEecchhhEEeCCEE
Confidence            521     12369999         999999999999 999999999999863

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.81  E-value=4.4e-20  Score=147.05  Aligned_cols=101  Identities=16%  Similarity=0.221  Sum_probs=83.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++...    ......++++|+|+++++++|+| +++++++.|+.|||+|+||+++.||    +  ++.+.. |
T Consensus       346 ~TE~~~~~~~~~----~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY----~--~~~~~~-~  413 (537)
T PRK13382        346 ATEAGMIATATP----ADLRAAPDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGY----T--SGSTKD-F  413 (537)
T ss_pred             ccccCcceecCh----hHhccCCCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCc----c--ccchhh-c
Confidence            689876554332    11234567999999999999999 5799999999999999999999999    6  444433 3


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                               .+|||+|         ||++++|++|++ |+||+||+||++|.
T Consensus       414 ---------~~g~~~T---------GDl~~~~~~g~l~~~GR~dd~ik~~G~  447 (537)
T PRK13382        414 ---------HDGFMAS---------GDVGYLDENGRLFVVGRDDEMIVSGGE  447 (537)
T ss_pred             ---------cCCCEee---------CceEEEeCCCcEEEeccccceeEECCE
Confidence                     3589999         999999999999 99999999999885

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.81  E-value=5.7e-20  Score=146.47  Aligned_cols=104  Identities=28%  Similarity=0.294  Sum_probs=86.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++...   .........++|+|+++++++|+| +++++++.|+.|||+|+|++++.||    +++|+.++.. 
T Consensus       346 ~TE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~t~~~-  416 (547)
T PRK13295        346 MTENGAVTLTKL---DDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGY----LKRPQLNGTD-  416 (547)
T ss_pred             CCCCCCeeeccC---CCcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccc----cCCccccccC-
Confidence            689876543322   111123356899999999999999 5789999999999999999999999    9999887653 


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                               .+|||+|         ||+|+++++|++ ++||.||+||++|.
T Consensus       417 ---------~~g~~~T---------GD~~~~~~~g~l~~~gR~~~~i~~~G~  450 (547)
T PRK13295        417 ---------ADGWFDT---------GDLARIDADGYIRISGRSKDVIIRGGE  450 (547)
T ss_pred             ---------CCCCeec---------ceEEEEcCCceEEEEeccCCeEEECCE
Confidence                     2579999         999999999999 99999999999885

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.81  E-value=8.7e-20  Score=144.73  Aligned_cols=89  Identities=20%  Similarity=0.280  Sum_probs=81.5

Q ss_pred             CCCCccccCC-CCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccC
Q 032813           21 TKSGSCGTVV-RNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQA   99 (133)
Q Consensus        21 ~~~~~vG~p~-p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~   99 (133)
                      ....++|+|+ ++..++|+| +++++++.|+.|||+|+|+.++.||    |++++.+++.|.        .++||+|   
T Consensus       349 ~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY----~~~~~~~~~~~~--------~dg~~~T---  412 (527)
T TIGR02275       349 IIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGY----YKAPEHNAAAFD--------AEGFYYT---  412 (527)
T ss_pred             cccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhh----cCChhHhHhhcC--------cCCCEEc---
Confidence            3456899999 488999999 6799999999999999999999999    999999998886        5789999   


Q ss_pred             CCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813          100 EPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus       100 ~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                            ||+++++++|++ ++||.||+||++|.
T Consensus       413 ------GDl~~~~~~g~l~~~gR~~d~i~~~G~  439 (527)
T TIGR02275       413 ------GDLVRLTPEGYIVVVGRAKDQINRGGE  439 (527)
T ss_pred             ------CceEEEcCCccEEEEecccceeecCCE
Confidence                  999999999999 99999999999885

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.81  E-value=8.1e-20  Score=145.74  Aligned_cols=105  Identities=26%  Similarity=0.478  Sum_probs=89.7

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++....    ......+++|+|++++.++|+| +++++++.|+.|||+|+|+.++.||    |++++.+++.|
T Consensus       363 ~tE~~~~~~~~~~----~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~~  433 (560)
T PRK08751        363 LTETSPAACINPL----TLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGY----WKRPEETAKVM  433 (560)
T ss_pred             cccCCCceecccc----cccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCccchhh----cCChhhhhhcc
Confidence            5888765544321    1123457899999999999999 6799999999999999999999999    99999998887


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .        .+|||+|         ||++++|++|++ ++||.+|+||++|.
T Consensus       434 ~--------~~g~~~T---------GD~~~~~~~g~l~i~GR~~d~i~~~G~  468 (560)
T PRK08751        434 D--------ADGWLHT---------GDIARMDEQGFVYIVDRKKDMILVSGF  468 (560)
T ss_pred             c--------cCCCccc---------cceEEEcCCceEEEEeechhheeECCE
Confidence            5        4689999         999999999999 99999999999885

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.81  E-value=1.1e-19  Score=147.12  Aligned_cols=113  Identities=22%  Similarity=0.257  Sum_probs=87.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcC---ccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP---QIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp---~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++..++..... ......+.+++|+|+|+++++|+|+++|++++.|+.|||+|+||   .++.+|    |++++.+.
T Consensus       389 ~TE~~~~~~~~~~~-~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~----~~~~~~~~  463 (629)
T PRK10524        389 QTETGWPILAIARG-VEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTV----WGDDDRFV  463 (629)
T ss_pred             cccccchhhcCCCC-cccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCc----cCChHHHH
Confidence            68987433322111 11123456899999999999999954899999999999999998   466777    99998877


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.+...   .  .++||+|         ||+|++|+||++ |+||+||+||+.|..
T Consensus       464 ~~~~~~---~--~~~~~~T---------GDl~~~d~dG~l~i~GR~dd~i~~~G~r  505 (629)
T PRK10524        464 KTYWSL---F--GRQVYST---------FDWGIRDADGYYFILGRTDDVINVAGHR  505 (629)
T ss_pred             Hhhhcc---C--CCcEEEc---------CCcEEEcCCCcEEEEEEecCeEEeCCEE
Confidence            665311   1  3478998         999999999999 999999999999864

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.81  E-value=1.2e-19  Score=144.37  Aligned_cols=107  Identities=31%  Similarity=0.480  Sum_probs=90.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++....  ......+..++|+|+|++.++|+|+ ++++++.|+.|||+|+|+.++.||    +++++.+.+.|
T Consensus       352 ~tE~~~~~~~~~~--~~~~~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~~gy----~~~~~~~~~~~  424 (558)
T PRK12583        352 MTETSPVSLQTTA--ADDLERRVETVGRTQPHLEVKVVDP-DGATVPRGEIGELCTRGYSVMKGY----WNNPEATAESI  424 (558)
T ss_pred             ccccccceeccCc--ccccccccCCCCccCCCCeEEEECC-CCCCCCCCCeeEEEEEeCccchhh----cCChHHHHhhc
Confidence            5888866554321  1122345679999999999999996 499999999999999999999999    99999988877


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .        .++||+|         ||+++++++|++ ++||+||+||++|.
T Consensus       425 ~--------~~~~~~T---------GDl~~~~~dg~l~i~GR~~~~i~~~G~  459 (558)
T PRK12583        425 D--------EDGWMHT---------GDLATMDEQGYVRIVGRSKDMIIRGGE  459 (558)
T ss_pred             C--------CCCCeec---------cceEEECCCccEEEEecccceeEECCE
Confidence            4        4689999         999999999999 99999999999875

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.81  E-value=1e-19  Score=142.99  Aligned_cols=112  Identities=19%  Similarity=0.111  Sum_probs=88.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...............++|+|+|+++++|+| ++++++++|+.|||+|+|++++.||    +++++.+.+.|
T Consensus       293 ~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy----~~~~~~~~~~~  367 (502)
T TIGR01734       293 PTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGY----LNNPEKTAEAF  367 (502)
T ss_pred             CCcceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccc----cCCcccchHhh
Confidence            588765443322111111223446899999999999999 5689999999999999999999999    99999998887


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ...     ...+||+|         ||+|++|++ +| ++||.+|+||++|.+
T Consensus       368 ~~~-----~~~~~~~T---------GDlg~~~~~-~l~i~GR~~d~i~~~G~~  405 (502)
T TIGR01734       368 FSH-----EGQPAYRT---------GDAGTITDG-QLFYQGRLDFQIKLHGYR  405 (502)
T ss_pred             eeC-----CCcEEEEC---------CCEEEEECC-EEEEeccccCeEEECcEE
Confidence            411     13469999         999999987 88 999999999999864

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.81  E-value=1.2e-19  Score=144.34  Aligned_cols=105  Identities=26%  Similarity=0.310  Sum_probs=85.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++...   .........++|+|+|+++++|+| +++++++.|+.|||+|+|++++.||    +++|+.++.  
T Consensus       344 ~tE~~~~~~~~~---~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy----~~~~~~~~~--  413 (538)
T TIGR03208       344 MTENGAVTVTEP---DDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGY----LKRPHLNST--  413 (538)
T ss_pred             cCcCCCccccCc---ccchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccc----cCCcccccc--
Confidence            589876544332   111122346899999999999999 6789999999999999999999999    999887642  


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .++||+|         ||+|++|++|+| ++||.||+||++|..
T Consensus       414 ~--------~~~~~~T---------GD~~~~~~~g~l~~~gR~~~~i~~~G~~  449 (538)
T TIGR03208       414 D--------AEGWFDT---------GDLAFQDAEGYIRINGRSKDVIIRGGEN  449 (538)
T ss_pred             c--------CCCceec---------cceEEECCCCcEEEEeccCceEEECCEE
Confidence            1        4689999         999999999999 999999999998853

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.81  E-value=1.4e-19  Score=142.27  Aligned_cols=108  Identities=28%  Similarity=0.428  Sum_probs=90.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++++++.+..  .......+.++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||    +++++.+...|
T Consensus       316 ~tE~~~~~~~~~~--~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~~  388 (513)
T PRK07656        316 LSEASGVTTFNRL--DDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGY----YDDPEATAAAI  388 (513)
T ss_pred             cccCCCceeecCc--cccccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhh----cCCHHHHhhhh
Confidence            5898766655432  111112367899999999999999 5799999999999999999999999    99999888877


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .++||+|         ||+|+++++|++ ++||.||+||++|..
T Consensus       389 ~--------~~~~~~t---------GDl~~~~~~g~~~~~GR~~d~i~~~G~~  424 (513)
T PRK07656        389 D--------ADGWLHT---------GDLGRLDEEGYLYIVDRKKDMFIVGGFN  424 (513)
T ss_pred             c--------cCCceec---------cceEEEcCCeeEEEEecccceEEeCCEE
Confidence            4        4789999         999999999999 999999999998863

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.81  E-value=1.1e-19  Score=145.42  Aligned_cols=105  Identities=23%  Similarity=0.445  Sum_probs=89.4

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCC-CccCCCCCCeEEEEEcCccccccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEI-GASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~-g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~   79 (133)
                      +||++.+++....    ....+.+++|+|+|++.++|+|+++ +++++.|+.|||+|+|+.++.||    +++++.+++.
T Consensus       370 ~TE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~  441 (573)
T PRK05605        370 LTETSPIIVGNPM----SDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGY----WNRPEETAKS  441 (573)
T ss_pred             cchhchhhhcCCc----ccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhh----cCChhHhhhc
Confidence            5898766554321    1134567999999999999999655 68999999999999999999999    9999999888


Q ss_pred             HhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           80 IKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        80 f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      |.         +|||+|         ||++++|++|++ ++||+||+||++|.
T Consensus       442 ~~---------~g~~~T---------GD~~~~~~~g~l~i~gR~dd~i~~~G~  476 (573)
T PRK05605        442 FL---------DGWFRT---------GDVVVMEEDGFIRIVDRIKELIITGGF  476 (573)
T ss_pred             cc---------CCCccc---------CCEEEEcCCCcEEEEeccccceeeCCE
Confidence            83         579999         999999999999 99999999999875

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.81  E-value=1.5e-19  Score=143.93  Aligned_cols=105  Identities=30%  Similarity=0.430  Sum_probs=89.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+.+...   .........++|+|++++.++|+| +++++++.|+.|||+++|+.++.||    +++++.++..|
T Consensus       325 ~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy----~~~~~~~~~~f  396 (542)
T PRK07786        325 QTEMSPVTCMLL---GEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGY----WNNPEATAEAF  396 (542)
T ss_pred             ccccccceEecC---cccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhh----cCCHHHHHHHh
Confidence            578775444321   111224557899999999999999 6789999999999999999999999    99999999888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                               .++||+|         ||+++++++|++ ++||.||+||++|.
T Consensus       397 ---------~~~~~~T---------GDl~~~~~~g~~~i~GR~~d~i~~~G~  430 (542)
T PRK07786        397 ---------AGGWFHS---------GDLVRQDEEGYVWVVDRKKDMIISGGE  430 (542)
T ss_pred             ---------hCCcccc---------cceEEEcCCceEEEEecccceEEeCCE
Confidence                     4689999         999999999999 99999999999875

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.81  E-value=8.1e-20  Score=145.38  Aligned_cols=107  Identities=26%  Similarity=0.330  Sum_probs=89.4

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+.....   .........++|+|++++.++|+| +++++++.|+.|||+++|++++.||    +++++.+...|
T Consensus       335 ~TE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy----~~~~~~~~~~~  406 (547)
T PRK06087        335 STESSPHAVVNL---DDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGY----LDEPELTARAL  406 (547)
T ss_pred             ccccCCccccCC---CcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccc----cCCHHHHHHHh
Confidence            588876544321   111122346789999999999999 6789999999999999999999999    99999998888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .++||+|         ||++++|++|++ ++||.+|+||++|..
T Consensus       407 ~--------~~g~~~T---------GDl~~~~~~g~l~i~GR~~d~i~~~G~~  442 (547)
T PRK06087        407 D--------EEGWYYS---------GDLCRMDEAGYIKITGRKKDIIVRGGEN  442 (547)
T ss_pred             C--------CCCCcCc---------CceEEECCCCCEEEEecchhhhhcCCEE
Confidence            5        5689999         999999999999 999999999998853

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.81  E-value=1.6e-19  Score=141.45  Aligned_cols=104  Identities=22%  Similarity=0.327  Sum_probs=86.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCC-CCC-CeEEEEEcCccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLP-HNQ-PGEICIRGPQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~-~g~-~Gel~i~gp~~~~GY~~~~~~~~~~t~~   78 (133)
                      +||++..++...     .....+.++|+|+++++++|+| +++++++ .++ +|||+|+|++++.||    +++++.+++
T Consensus       275 ~tE~~~~~~~~~-----~~~~~~~~vG~~~~g~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy----~~~~~~t~~  344 (471)
T PRK07787        275 MTETLITLSTRA-----DGERRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGY----LNRPDATAA  344 (471)
T ss_pred             ccccCcceecCC-----CCcccCCcccccCCCcEEEEEC-CCCCCCCCCCCCceEEEEECcccchhh----cCChhhchh
Confidence            588875433321     1234567899999999999999 4688887 344 799999999999999    999999998


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeec-CCeEEeCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRK-KVWVRFDPL  131 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~-dd~Iki~~~  131 (133)
                      .|.        .++||+|         ||+|++++||++ ++||+ |++||++|.
T Consensus       345 ~~~--------~~~~~~T---------GDlg~~~~dg~l~~~GR~~d~~i~~~G~  382 (471)
T PRK07787        345 AFT--------ADGWFRT---------GDVAVVDPDGMHRIVGRESTDLIKSGGY  382 (471)
T ss_pred             ccc--------CCCceec---------CceEEEcCCCCEEEeCCCCceeEeeCCE
Confidence            885        5789999         999999999999 99996 899999885

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.80  E-value=8.4e-20  Score=147.70  Aligned_cols=97  Identities=18%  Similarity=0.221  Sum_probs=80.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      |||++.+++....     .....+++|+|+|+++++|+|+        +..|||+|+||+++.||    |++|+.|++.|
T Consensus       374 ~TE~~~~~~~~~~-----~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~~GY----~~~p~~t~~~~  436 (614)
T PRK08180        374 MTETAPSATFTTG-----PLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVTPGY----WRAPELTAEAF  436 (614)
T ss_pred             ccccCCceEeccc-----ccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccchhh----cCChhHhHhhc
Confidence            6898766554321     1245689999999999999983        34699999999999999    99999999998


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEE----cCCCeE-EEeecCCeEEe-CCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALR----TRAGYE-LKKRKKVWVRF-DPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~----d~dG~l-~~GR~dd~Iki-~~~  131 (133)
                      .        .+|||+|         ||+|++    |++|+| |+||+||+||+ +|.
T Consensus       437 ~--------~dgw~~T---------GDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~  476 (614)
T PRK08180        437 D--------EEGYYRS---------GDAVRFVDPADPERGLMFDGRIAEDFKLSSGT  476 (614)
T ss_pred             c--------cCCceec---------cceEEecCCcCCCCceEEecchhhhEEcCCCc
Confidence            5        5799999         999999    578999 99999999885 453

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.80  E-value=1.4e-19  Score=138.59  Aligned_cols=115  Identities=19%  Similarity=0.111  Sum_probs=90.0

Q ss_pred             CCCCCcccccccCCCCCCCCC-CCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPT-KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~-~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~   79 (133)
                      +||++..++..... ...... +..++|+|+++++++|+++ ++++++.|+.|||+|++++++.||    +++++.+.+.
T Consensus       269 ~tE~g~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~  342 (408)
T TIGR01733       269 PTETTVWSTATLVD-ADDAPRESPVPIGRPLANTRLYVLDD-DLRPVPVGVVGELYIGGPGVARGY----LNRPELTAER  342 (408)
T ss_pred             CCceEEEEEEEEcC-ccccCCccccccCcccCCceEEEECC-CCCCCCCCCceEEEecCccccccc----cCChhhhhcc
Confidence            58887666533221 111111 3778999999999999995 599999999999999999999999    9999999888


Q ss_pred             HhhhhcccCCCCc--ccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           80 IKLNRLTMGSSLG--WASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        80 f~~~~~~~~~~~g--w~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |......  ..++  ||+|         ||++++|++|++ ++||.||+|+++|.+
T Consensus       343 ~~~~~~~--~~~~~~~~~T---------GDl~~~d~~g~~~~~gR~~~~i~~~G~~  387 (408)
T TIGR01733       343 FVPDPFA--GGDGARLYRT---------GDLVRYLPDGNLEFLGRIDDQVKIRGYR  387 (408)
T ss_pred             eeeCCCC--CCCCceEEEC---------CceEEEcCCCCEEEeeccCCEEEeCeEE
Confidence            8522111  1123  8888         999999999999 999999999998864

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.80  E-value=1.3e-19  Score=146.87  Aligned_cols=97  Identities=16%  Similarity=0.092  Sum_probs=79.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      |||++.+++....     ...+.+++|+|+|+++++|++        .|+.|||+|+||+++.||    |++|+.+++.|
T Consensus       386 ~TE~~~~~~~~~~-----~~~~~~svG~p~pg~~v~i~~--------~G~~GEl~vrg~~v~~GY----~~~p~~t~~~f  448 (624)
T PRK12582        386 ATETAPTTTGTHW-----DTERVGLIGLPLPGVELKLAP--------VGDKYEVRVKGPNVTPGY----HKDPELTAAAF  448 (624)
T ss_pred             cccccceeecccC-----CCCCCCCCCcCCCCcEEEEcc--------CCCceEEEEECCcccccc----cCCccchhhhc
Confidence            6898765442211     124567999999999999864        467899999999999999    99999999998


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEE-c---CCCeE-EEeecCCeEEe-CCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALR-T---RAGYE-LKKRKKVWVRF-DPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~-d---~dG~l-~~GR~dd~Iki-~~~  131 (133)
                      .        .+|||+|         ||+|++ |   ++|+| |+||+||+||+ +|.
T Consensus       449 ~--------~dgw~~T---------GDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~  488 (624)
T PRK12582        449 D--------EEGFYRL---------GDAARFVDPDDPEKGLIFDGRVAEDFKLSTGT  488 (624)
T ss_pred             C--------ccCCccc---------cceEEecCCcCCCCceEEeccchhhEecCCCc
Confidence            5        5799999         999998 4   56999 99999999996 454

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.80  E-value=2.3e-19  Score=143.29  Aligned_cols=106  Identities=28%  Similarity=0.429  Sum_probs=89.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..+.....    .....++++|+|++++.++|++++++++++.|+.|||+|+|+.++.||    +++++.+...|
T Consensus       357 ~tE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~~~~~~  428 (563)
T PRK06710        357 LTESSPVTHSNFL----WEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGY----WNKPEETAAVL  428 (563)
T ss_pred             cccCccccccCcc----cccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhh----hCChHHHhhhc
Confidence            5787754332211    112345789999999999999977889999999999999999999999    99999998877


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .++||+|         ||+++++++|++ ++||.||+||++|..
T Consensus       429 ---------~~g~~~T---------GD~~~~~~~g~~~~~GR~dd~i~~~G~~  463 (563)
T PRK06710        429 ---------QDGWLHT---------GDVGYMDEDGFFYVKDRKKDMIVASGFN  463 (563)
T ss_pred             ---------ccCcccc---------cceEEEcCCCcEEEeeccccEEEECCEE
Confidence                     4689999         999999999999 999999999998853

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.79  E-value=6.2e-19  Score=140.77  Aligned_cols=104  Identities=31%  Similarity=0.558  Sum_probs=88.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++.+..    .......++|+|+|+++++|+| +++++++.|+.|||+|+|+.++.||    +++++.+++.|
T Consensus       359 ~tE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy----~~~~~~~~~~~  429 (560)
T PRK08974        359 LTECSPLVSVNPY----DLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGY----WQRPEATDEVI  429 (560)
T ss_pred             ccccCceeeccCC----CCcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEecCCcchhh----cCChhhhhhhh
Confidence            5888765544321    1123457899999999999999 5789999999999999999999999    99999988887


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                               .++||+|         ||+++++++|++ ++||.+|+||+.|.
T Consensus       430 ---------~~g~~~T---------GDl~~~~~~g~l~i~GR~~d~i~~~G~  463 (560)
T PRK08974        430 ---------KDGWLAT---------GDIAVMDEEGFLRIVDRKKDMILVSGF  463 (560)
T ss_pred             ---------hcCCccc---------CCEEEEcCCceEEEEecccceEEeCCE
Confidence                     3689999         999999999999 99999999999875

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.79  E-value=7.2e-20  Score=143.74  Aligned_cols=104  Identities=25%  Similarity=0.364  Sum_probs=86.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCC--CeEEEEEcCccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQ--PGEICIRGPQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~--~Gel~i~gp~~~~GY~~~~~~~~~~t~~   78 (133)
                      +||+++..+...     ......+.+|.|++.++++++|.+++--.+.+.  .|||+|+|+.+.+||    ++||+.|++
T Consensus       436 LTEtca~~tv~e-----~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY----~kn~ekT~e  506 (678)
T KOG1180|consen  436 LTETCAAATVLE-----PEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGY----YKNEEKTKE  506 (678)
T ss_pred             ccchhcccEecC-----hhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhh----hCChhhhhh
Confidence            588876655543     234556799999999999999976665544444  799999999999999    999999999


Q ss_pred             HHhhhhcccCCCCc--ccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeC
Q 032813           79 IIKLNRLTMGSSLG--WASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFD  129 (133)
Q Consensus        79 ~f~~~~~~~~~~~g--w~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~  129 (133)
                      .|..       ++|  ||+|         ||+|.+.+||.| |++|+||+||+-
T Consensus       507 ~ft~-------~~G~~WF~T---------GDIGe~~pdG~LkIIDRKKdLVKlq  544 (678)
T KOG1180|consen  507 DFTV-------EDGQRWFRT---------GDIGEFHPDGCLKIIDRKKDLVKLQ  544 (678)
T ss_pred             hcee-------cCCcEEEec---------cccceecCCCcEEEeechhhhhhhc
Confidence            9972       267  9999         999999999999 999999999964

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.79  E-value=6.2e-19  Score=139.08  Aligned_cols=103  Identities=20%  Similarity=0.370  Sum_probs=88.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++...     ....+.+++|+|+++++++|+| ++++++++|+.|||+|+|++++.||    +++++.+++.|
T Consensus       312 ~tE~~~~~~~~~-----~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY----~~~~~~~~~~~  381 (508)
T TIGR02262       312 STEMLHIFLSNL-----PGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMY----WNNRAKTRDTF  381 (508)
T ss_pred             ccccCceeecCC-----ccCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCcccccc----CCCHHHhHhhh
Confidence            478775444321     1123467899999999999999 7899999999999999999999999    99999999888


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                               .++||+|         ||+++++++|.+ ++||.||+||+.|.
T Consensus       382 ---------~~~~~~T---------GD~~~~~~~g~~~~~gR~~d~i~~~G~  415 (508)
T TIGR02262       382 ---------QGEWTRS---------GDKYVRNDDGSYTYAGRTDDMLKVSGI  415 (508)
T ss_pred             ---------hcCceec---------cceEEEcCCccEEEeccccceeeeCCE
Confidence                     3689999         999999999999 99999999999875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.79  E-value=4.5e-19  Score=141.21  Aligned_cols=101  Identities=28%  Similarity=0.406  Sum_probs=85.2

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCC------------CeEEEE-EcCcccccccc
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQ------------PGEICI-RGPQIMKVAEL   67 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~------------~Gel~i-~gp~~~~GY~~   67 (133)
                      +||++..++...       ....+++|.|+++  ++|++++++++++.|+            .|||++ +|++++.||  
T Consensus       299 ~TE~~~~~~~~~-------~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy--  367 (529)
T PRK07867        299 STEGGVAITRTP-------DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGY--  367 (529)
T ss_pred             ccccccccccCC-------CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccc--
Confidence            688875443211       1345689999998  7788866788999988            999999 999999999  


Q ss_pred             ccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           68 EFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        68 ~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                        |++++.+.+.|         .+|||+|         ||+++++++|++ |+||+||+||++|..
T Consensus       368 --~~~~~~~~~~~---------~~g~~~T---------GD~~~~~~~g~l~~~GR~~d~i~~~G~~  413 (529)
T PRK07867        368 --YNDPEADAERM---------RGGVYWS---------GDLAYRDADGYAYFAGRLGDWMRVDGEN  413 (529)
T ss_pred             --cCChHhhhhhh---------cCCeEee---------ccEEEEeCCCcEEEeccccCeEEECCEE
Confidence              99999998888         4689999         999999999999 999999999998853

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.78  E-value=6.1e-19  Score=139.60  Aligned_cols=109  Identities=27%  Similarity=0.426  Sum_probs=89.6

Q ss_pred             CCCCCcccccccCCCC-CCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAK-QPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~-~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~   79 (133)
                      +||++..++....... ........++|+|+|++.++|+| +++++++.|+.|||+|+|+.++.||    +++++.+...
T Consensus       315 ~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~  389 (524)
T PRK06188        315 QTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGY----WNRPEETAEA  389 (524)
T ss_pred             ccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhh----cCChHHhhhh
Confidence            5888655444321100 01223567899999999999999 5699999999999999999999999    9999998888


Q ss_pred             HhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           80 IKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        80 f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |         .+|||+|         ||+++++++|++ ++||.+++||++|..
T Consensus       390 ~---------~~g~~~T---------GDl~~~~~~g~~~~~GR~~~~i~~~G~~  425 (524)
T PRK06188        390 F---------RDGWLHT---------GDVAREDEDGFYYIVDRKKDMIVTGGFN  425 (524)
T ss_pred             h---------cCCceee---------cceEEEcCCccEEEEeccccceecCCEE
Confidence            8         4689999         999999999999 999999999998853

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.78  E-value=6.6e-19  Score=140.47  Aligned_cols=102  Identities=23%  Similarity=0.264  Sum_probs=81.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEE-----------EEcCCCCccC-CCCCCeEEEEE-cCcccccccc
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELK-----------VIDPEIGASL-PHNQPGEICIR-GPQIMKVAEL   67 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~-----------i~d~~~g~~~-~~g~~Gel~i~-gp~~~~GY~~   67 (133)
                      +||++.+++...       ....+++|+|++++++.           ++| ++|+++ +.+..|||+++ |++++.||  
T Consensus       297 ~tE~~~~~~~~~-------~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY--  366 (540)
T PRK13388        297 SSEGAVIVVREP-------GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGY--  366 (540)
T ss_pred             cccccceeecCC-------CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccc--
Confidence            588875443221       23457899999997653           444 455555 34678999998 99999999  


Q ss_pred             ccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           68 EFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        68 ~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                        |++|+.+++.|         .+|||+|         ||+|++|++|++ ++||+||+||++|..
T Consensus       367 --~~~~~~t~~~~---------~~g~~~T---------GD~~~~~~dg~l~i~GR~~d~i~~~G~~  412 (540)
T PRK13388        367 --YNNPEATAERM---------RHGMYWS---------GDLAYRDADGWIYFAGRTADWMRVDGEN  412 (540)
T ss_pred             --cCChHHHHHHh---------hcCceec---------cceEEEcCCCcEEEeccCCceEEECCEE
Confidence              99999999988         3689999         999999999999 999999999998863

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.78  E-value=1.7e-19  Score=137.50  Aligned_cols=89  Identities=21%  Similarity=0.316  Sum_probs=82.0

Q ss_pred             CCCCCccccCC-CCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCccccccc
Q 032813           20 PTKSGSCGTVV-RNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQ   98 (133)
Q Consensus        20 ~~~~~~vG~p~-p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~   98 (133)
                      +....+-|+|+ |.-+++|+| ++|+++++|++|+|..|||..++||    |+.|+.++.+|.        .+|+|+|  
T Consensus       354 E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGY----yrap~HNa~aF~--------a~GFYrs--  418 (542)
T COG1021         354 EIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGY----YRAPEHNARAFD--------ADGFYRS--  418 (542)
T ss_pred             HheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeee----ccCchhhhhccC--------cCCceec--
Confidence            44456889998 678999999 7899999999999999999999999    999999999997        6899999  


Q ss_pred             CCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCC
Q 032813           99 AEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDP  130 (133)
Q Consensus        99 ~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~  130 (133)
                             ||+.++|+|||| +.||.||||+.-|
T Consensus       419 -------GD~V~~~~dGyl~V~GR~KDQINRgG  444 (542)
T COG1021         419 -------GDLVRRDPDGYLVVEGRVKDQINRGG  444 (542)
T ss_pred             -------CceeEecCCceEEEEeeehhhhcccc
Confidence                   999999999999 9999999999765

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.78  E-value=8.2e-19  Score=138.12  Aligned_cols=104  Identities=22%  Similarity=0.317  Sum_probs=88.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++...    .......+++|+|+ +..++|+| +++++++.|+.|||+++|+.++.||    |++++.+++.|
T Consensus       296 ~tE~~~~~~~~~----~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~~  365 (502)
T PRK08276        296 SSEGGGVTVITS----EDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEY----HNDPEKTAAAR  365 (502)
T ss_pred             cccccceeEecC----ccccccCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchh----cCCHHHHHHHh
Confidence            588876544432    11234557899999 88999999 5789999999999999999999999    99999999988


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      .        .++||+|         ||+++++++|++ ++||.||+||++|.
T Consensus       366 ~--------~~~~~~T---------GD~~~~~~~g~~~~~GR~~~~i~~~G~  400 (502)
T PRK08276        366 N--------PHGWVTV---------GDVGYLDEDGYLYLTDRKSDMIISGGV  400 (502)
T ss_pred             c--------CCCceee---------cceEEEcCCcCEEEeccCcceEEeCCE
Confidence            6        4599999         999999999999 99999999999885

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.78  E-value=1.1e-18  Score=138.74  Aligned_cols=106  Identities=26%  Similarity=0.301  Sum_probs=87.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEc-CCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID-PEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d-~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~   79 (133)
                      +||++..++....    .....+.++|+|++++.++|++ .+++++++.|+.|||+|+|++++.||    |++|+.+++.
T Consensus       346 ~TE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~  417 (541)
T TIGR03205       346 MTETCSPGTGHPP----EGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGY----WNRPEESAEA  417 (541)
T ss_pred             cccCCcccccCCC----CCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccc----cCChhhhHhh
Confidence            5888765544321    1123457899999999988764 25688999999999999999999999    9999999988


Q ss_pred             HhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           80 IKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        80 f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |.         ++||+|         ||+++++++|++ ++||.||+||++|..
T Consensus       418 ~~---------~~~~~T---------GD~~~~~~~g~l~i~GR~~~~i~~~G~~  453 (541)
T TIGR03205       418 FV---------GDRFLT---------GDIGYMDTDGYFFLVDRKKDMIISGGFN  453 (541)
T ss_pred             hc---------cCCccc---------CceEEEcCCceEEEEccccCeEEECCEE
Confidence            83         589999         999999999999 999999999998753

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.78  E-value=7.7e-19  Score=138.27  Aligned_cols=114  Identities=19%  Similarity=0.195  Sum_probs=88.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      |||++..+...    ......+.+++|+|+++++++|++ +++++++.|+.|||+++|+.++.||    |++++.+++.|
T Consensus       309 ~tE~~~~~~~~----~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy----~~~~~~~~~~~  379 (515)
T TIGR03098       309 LTEAFRSTYLP----PEEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGY----WNDPEKTAERF  379 (515)
T ss_pred             cccccceEecc----cccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccc----cCCchhhhhhh
Confidence            57876433221    111234568999999999999999 6799999999999999999999999    99999998888


Q ss_pred             hhhhc---ccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRL---TMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~---~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .....   .....++||+|         ||+|++|++|++ +.||.||+||++|..
T Consensus       380 ~~~~~~~~~~~~~~~~~~T---------GD~~~~~~~g~l~~~GR~~d~i~~~G~~  426 (515)
T TIGR03098       380 RPLPPRPGELHLPELAVWS---------GDTVRRDEEGFLYFVGRRDEMIKTSGYR  426 (515)
T ss_pred             hccCCccccccccccceec---------cceEEEcCCceEEEEeccccceecCCEE
Confidence            63211   00011235555         999999999999 999999999998864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.78  E-value=8.2e-19  Score=138.44  Aligned_cols=104  Identities=27%  Similarity=0.295  Sum_probs=86.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCcccc-ccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK-VAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~-GY~~~~~~~~~~t~~~   79 (133)
                      +||++.+++...    .+....++++|+|+++++++|+| +++++++.|+.|||+++++.++. +|    +++++.++..
T Consensus       305 ~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y----~~~~~~~~~~  375 (509)
T PRK12406        305 STESGAVTFATS----EDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTY----HNKPEKRAEI  375 (509)
T ss_pred             ccccCceEecCc----ccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccc----cCCchhcccc
Confidence            689886544321    12234567899999999999999 57899999999999999998875 88    8998887765


Q ss_pred             HhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           80 IKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        80 f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      +         .++||+|         ||++++|++|++ ++||.||+||++|.
T Consensus       376 ~---------~~~~~~T---------GD~~~~~~~g~~~~~GR~~d~ik~~G~  410 (509)
T PRK12406        376 D---------RGGFITS---------GDVGYLDADGYLFLCDRKRDMVISGGV  410 (509)
T ss_pred             c---------CCCCeEE---------ccEEEEcCCceEEEeecccceEEECCE
Confidence            5         4689999         999999999999 99999999999885

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.78  E-value=5.5e-19  Score=141.87  Aligned_cols=85  Identities=27%  Similarity=0.551  Sum_probs=76.7

Q ss_pred             CccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCC
Q 032813           24 GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGR  103 (133)
Q Consensus        24 ~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~  103 (133)
                      .++|+|+|+++++|+| +++++++.++.|||+|+|+.++.||    |++ +.+.+.|.        .++||+|       
T Consensus       385 ~~vG~~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY----~~~-~~~~~~~~--------~dgw~~T-------  443 (579)
T PRK09192        385 VNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGY----FRD-EESQDVLA--------ADGWLDT-------  443 (579)
T ss_pred             eecCCcCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhhhh----cCC-cccccccc--------CCceeec-------
Confidence            5799999999999999 5789999999999999999999999    888 56666664        5789999       


Q ss_pred             CCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          104 WAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       104 ~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                        ||+|++ ++|++ |+||+||+||++|..
T Consensus       444 --GDlg~~-~~G~l~~~GR~dd~i~~~G~~  470 (579)
T PRK09192        444 --GDLGYL-LDGYLYITGRAKDLIIINGRN  470 (579)
T ss_pred             --cceeeE-ECCEEEEEeccccEEEECCCc
Confidence              999999 99999 999999999999864

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.78  E-value=6.2e-19  Score=143.76  Aligned_cols=91  Identities=14%  Similarity=0.102  Sum_probs=75.8

Q ss_pred             CCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcC--ccccccccccCCCchhhH--HHHhhhhcccCCCCccccc
Q 032813           21 TKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP--QIMKVAELEFWSDGGHDE--EIIKLNRLTMGSSLGWASK   96 (133)
Q Consensus        21 ~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp--~~~~GY~~~~~~~~~~t~--~~f~~~~~~~~~~~gw~~t   96 (133)
                      ...+++|.|.++++++|+| ++|+++ +|+.|||+|+||  +++.||    |++++.++  +.+..      ..+|||+|
T Consensus       436 ~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v~gp~p~~~~gy----~~~~~~t~~~~~~~~------~~~g~~~t  503 (652)
T TIGR01217       436 VHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELVCTNPMPSMPIRF----WNDPDGSKYRDAYFD------TYPGVWRH  503 (652)
T ss_pred             CcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEEEecCCCccccce----eCCCccchhHHhhhc------CCCCEEEc
Confidence            3467899999999999999 678888 599999999996  689999    99998654  22221      02477888


Q ss_pred             ccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           97 AQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        97 ~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               ||+|++|+||+| |+||+||+||+.|..
T Consensus       504 ---------GDlg~~d~dG~l~i~GR~dd~I~~~G~r  531 (652)
T TIGR01217       504 ---------GDWITLTPRGGIVIHGRSDSTLNPQGVR  531 (652)
T ss_pred             ---------CCcEEECCCCcEEEEecccCeEecCCEE
Confidence                     999999999999 999999999999864

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.78  E-value=5.4e-19  Score=145.32  Aligned_cols=108  Identities=22%  Similarity=0.374  Sum_probs=78.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCC--CchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWS--DGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~--~~~~t~~   78 (133)
                      |||++..++....     ...+.+++|+|+|+++++|+|+ ++.    ++.|||+++|++++.||    |+  +++.+..
T Consensus       513 ~TE~~~~~~~~~~-----~~~~~~svG~p~pg~~~~i~d~-~~~----~~~Gel~v~g~~v~~GY----~~~e~~~~~~~  578 (718)
T PRK08043        513 VTECAPVVSINVP-----MAAKPGTVGRILPGMDARLLSV-PGI----EQGGRLQLKGPNIMNGY----LRVEKPGVLEV  578 (718)
T ss_pred             cccccceEEecCC-----cccCCCCCCCcCCCCeeEEecC-CCC----CCceEEEEecCCccccc----cCCCCcccccc
Confidence            6898765544321     1245689999999999999984 342    46699999999999999    77  4443211


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .+....... ..+|||+|         ||+|++|+||+| |+||+||+||+.|.+
T Consensus       579 ~~~~~~~~~-~~~gw~~T---------GDlg~~d~dG~l~i~GR~~d~I~~~G~~  623 (718)
T PRK08043        579 PTAENARGE-MERGWYDT---------GDIVRFDEQGFVQIQGRAKRFAKIAGEM  623 (718)
T ss_pred             ccccccccc-ccCCeEec---------CCEEEEcCCCcEEEEecCCCeeEeCcEE
Confidence            110000000 03689999         999999999999 999999999999853

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.78  E-value=8.4e-19  Score=142.71  Aligned_cols=91  Identities=15%  Similarity=0.073  Sum_probs=75.6

Q ss_pred             CCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcC--ccccccccccCCCchhhH--HHHhhhhcccCCCCccccc
Q 032813           21 TKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP--QIMKVAELEFWSDGGHDE--EIIKLNRLTMGSSLGWASK   96 (133)
Q Consensus        21 ~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp--~~~~GY~~~~~~~~~~t~--~~f~~~~~~~~~~~gw~~t   96 (133)
                      .+.+++|.|+++++++|+| ++|+++ .|+.|||+|++|  +++.||    |++++.++  +.+..      ..++||+|
T Consensus       435 ~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~gp~p~~~~gy----~~~~~~~~~~~~~~~------~~~g~~~T  502 (655)
T PRK03584        435 VYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCTKPFPSMPLGF----WNDPDGSRYRDAYFD------TFPGVWRH  502 (655)
T ss_pred             cCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEEEccCCCCCccee----eCCCccchHHHhhhc------cCCCEeec
Confidence            4568899999999999999 678888 799999999996  799999    99987543  22210      02467788


Q ss_pred             ccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           97 AQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        97 ~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               ||+|++|+||+| |+||+||+||++|..
T Consensus       503 ---------GDl~~~d~dG~l~i~GR~dd~Ik~~G~r  530 (655)
T PRK03584        503 ---------GDWIEITEHGGVVIYGRSDATLNRGGVR  530 (655)
T ss_pred             ---------CCeEEECCCCeEEEEeeccCeeecCcEE
Confidence                     999999999999 999999999999853

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.77  E-value=1.3e-18  Score=137.69  Aligned_cols=102  Identities=17%  Similarity=0.141  Sum_probs=82.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..+....    ........++|+|+|+++++|+| ++++++++|+.|||+++|+.++.||    ++++.   ..+
T Consensus       326 ~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y----~~~~~---~~~  393 (516)
T PRK13383        326 STEVGIGALATP----ADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRY----TDGGG---KAV  393 (516)
T ss_pred             ccccccceeccc----cccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccc----cCCch---hhe
Confidence            689875443321    11123467899999999999999 5789999999999999999999999    76653   222


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .+|||+|         ||+|++|++|++ ++||+||+||++|.+
T Consensus       394 ---------~~g~~~T---------GDl~~~d~~G~l~i~GR~~~~i~~~G~~  428 (516)
T PRK13383        394 ---------VDGMTST---------GDMGYLDNAGRLFIVGREDDMIISGGEN  428 (516)
T ss_pred             ---------ecCceec---------ceeEEEcCCccEEEeccccceEEECCEE
Confidence                     3689999         999999999999 999999999998864

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.77  E-value=1.9e-18  Score=135.51  Aligned_cols=112  Identities=21%  Similarity=0.154  Sum_probs=88.4

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++............+..++|+|+++++++|+| +++.+++.|+.|||+|+|+.++.||    |++++.+.+.|
T Consensus       295 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~~  369 (503)
T PRK04813        295 PTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGY----LNNPEKTAEAF  369 (503)
T ss_pred             cchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEecccccccc----CCChhHhHHhh
Confidence            578765443322111111223456899999999999999 6899999999999999999999999    99999998887


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ...     ...+||+|         ||++++ ++|++ +.||.||+||++|.+
T Consensus       370 ~~~-----~g~~~~~t---------GD~~~~-~~g~~~~~GR~~d~i~~~G~~  407 (503)
T PRK04813        370 FTF-----DGQPAYHT---------GDAGYL-EDGLLFYQGRIDFQIKLNGYR  407 (503)
T ss_pred             ccC-----CCceeEEC---------CceEEe-eCCeEEEeccccceEEECcEE
Confidence            421     12359999         999999 99999 999999999998864

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.77  E-value=2.3e-18  Score=136.02  Aligned_cols=105  Identities=21%  Similarity=0.285  Sum_probs=86.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.++....    ......++++|+|+++ .++|+| +++++++.|+.|||+++|+ ++.||    +++++.+++.|
T Consensus       309 ~tE~~~~~~~~~----~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy----~~~~~~~~~~~  377 (511)
T PRK13391        309 ATEGLGFTACDS----EEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEY----LNDPAKTAEAR  377 (511)
T ss_pred             cccccceEEecC----ccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEE----cCChhHhHHhh
Confidence            578876543321    1123456799999999 699999 6799999999999999999 88999    99999998887


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..       +++||+|         ||+|+++++|++ ++||.||+||++|..
T Consensus       378 ~~-------~~~w~~T---------GD~g~~~~~g~l~~~gR~~~~i~~~G~~  414 (511)
T PRK13391        378 HP-------DGTWSTV---------GDIGYVDEDGYLYLTDRAAFMIISGGVN  414 (511)
T ss_pred             cc-------CCCEEec---------CCEEEECCCccEEEeccCCCEEEeCCEE
Confidence            51       2489999         999999999999 999999999998853

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.76  E-value=2.1e-18  Score=138.14  Aligned_cols=93  Identities=19%  Similarity=0.278  Sum_probs=76.5

Q ss_pred             ccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcc---cCCCCcccccccCCC
Q 032813           25 SCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLT---MGSSLGWASKAQAEP  101 (133)
Q Consensus        25 ~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~---~~~~~gw~~t~~~~~  101 (133)
                      ++|+|. +.+++|+|++++++++.|+.|||+|+|++++.||    |++|+.+++.|..+...   ....++||+|     
T Consensus       372 ~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~t~~~f~~~~~~~~~~~~~~~w~~T-----  441 (578)
T PRK05850        372 SYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGY----WQKPEETERTFGATLVDPSPGTPEGPWLRT-----  441 (578)
T ss_pred             eccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccc----cCChhhhHHHhhcccccccccCCCCCeeec-----
Confidence            456654 5789999977789999999999999999999999    99999999999521110   0012479999     


Q ss_pred             CCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          102 GRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       102 ~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                          ||+|+++ +|+| |+||+||+||++|.+
T Consensus       442 ----GDl~~~~-~G~l~~~GR~~d~i~~~G~~  468 (578)
T PRK05850        442 ----GDLGFIS-EGELFIVGRIKDLLIVDGRN  468 (578)
T ss_pred             ----cceeeEE-CCEEEEEcccccEEEECCee
Confidence                9999998 8999 999999999999864

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.75  E-value=6.5e-18  Score=132.77  Aligned_cols=109  Identities=30%  Similarity=0.425  Sum_probs=88.6

Q ss_pred             CCCCCcccccccCCCCCC-CCCCCCccccCCCCcEEEEEcCCCCccCCC--CCCeEEEEEcCccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQP-FPTKSGSCGTVVRNAELKVIDPEIGASLPH--NQPGEICIRGPQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~--g~~Gel~i~gp~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++.+++......... ......++|+|++++.++|+| +++++++.  |+.|||++++++++.||    +++++.+.
T Consensus       315 ~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y----~~~~~~~~  389 (521)
T PRK06187        315 MTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGY----WNRPEATA  389 (521)
T ss_pred             cCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhh----cCCHHHHH
Confidence            578876554432110000 012567999999999999999 56889998  99999999999999999    99999998


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.|.         ++||+|         ||+++++++|++ ++||.+|+||++|..
T Consensus       390 ~~~~---------~~~~~t---------GD~~~~~~~g~~~~~GR~~~~i~~~G~~  427 (521)
T PRK06187        390 ETID---------GGWLHT---------GDVGYIDEDGYLYITDRIKDVIISGGEN  427 (521)
T ss_pred             HHhh---------CCceec---------cceEEEcCCCCEEEeecccceEEcCCeE
Confidence            8883         579999         999999999999 999999999999863

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.73  E-value=9.3e-18  Score=131.70  Aligned_cols=93  Identities=22%  Similarity=0.214  Sum_probs=73.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...   +.+......++|+|+|+++++|+         .|+.|||+|+||+++.||    |+++..     
T Consensus       263 ~TE~~~~~~~~~---~~~~~~~~~~~G~~~p~~~v~i~---------~g~~Gel~v~g~~~~~gY----~~~~~~-----  321 (452)
T PRK07445        263 MTETASQIATLK---PDDFLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSLALGY----YPQILD-----  321 (452)
T ss_pred             hhhhcccccccC---chhhccCCCcCCccCCCCeEEEc---------CCCcceEEEeCCccchhh----cCCccC-----
Confidence            589875444322   11112345689999999999997         356899999999999999    765321     


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .++||+|         ||++++|+||+| |+||+||+||++|.+
T Consensus       322 ---------~~g~~~T---------GDl~~~d~dG~l~~~GR~dd~I~~~G~~  356 (452)
T PRK07445        322 ---------SQGIFET---------DDLGYLDAQGYLHILGRNSQKIITGGEN  356 (452)
T ss_pred             ---------CCCEEEC---------CCEEEEcCCCCEEEEeecCCEEEECCEE
Confidence                     3589999         999999999999 999999999998853

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.73  E-value=1.6e-17  Score=132.30  Aligned_cols=83  Identities=20%  Similarity=0.396  Sum_probs=72.3

Q ss_pred             CCccccCCCCcEEEEEcCCCCccCCCC--CCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCC
Q 032813           23 SGSCGTVVRNAELKVIDPEIGASLPHN--QPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAE  100 (133)
Q Consensus        23 ~~~vG~p~p~~~v~i~d~~~g~~~~~g--~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~  100 (133)
                      ..++|+|+|+++++|+| +++++++.+  +.|||+++|+.++.||    |++++   ..+         .+|||+|    
T Consensus       355 ~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy----~~~~~---~~~---------~~g~~~T----  413 (539)
T PRK07008        355 LEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRY----FRGDA---SPL---------VDGWFPT----  413 (539)
T ss_pred             cccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhh----cCChh---hhh---------cCCCccc----
Confidence            46899999999999999 578888754  5799999999999999    88873   334         2589999    


Q ss_pred             CCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813          101 PGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus       101 ~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                           ||++++|+||++ ++||+||+||++|.
T Consensus       414 -----GD~~~~~~dg~l~~~GR~~d~i~~~G~  440 (539)
T PRK07008        414 -----GDVATIDADGFMQITDRSKDVIKSGGE  440 (539)
T ss_pred             -----CceEEEcCCCcEEEeecccCEEEeCCe
Confidence                 999999999999 99999999999885

>PLN02479 acetate-CoA ligase

Probab=99.73  E-value=9.7e-18  Score=134.38  Aligned_cols=87  Identities=28%  Similarity=0.375  Sum_probs=77.0

Q ss_pred             CccccCCCCcE-EEEEcCCCCccCCCC--CCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCC
Q 032813           24 GSCGTVVRNAE-LKVIDPEIGASLPHN--QPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAE  100 (133)
Q Consensus        24 ~~vG~p~p~~~-v~i~d~~~g~~~~~g--~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~  100 (133)
                      .++|.+.++.+ ++|+|++++++++.+  +.|||+++|++++.||    |++|+.+++.|         .++||+|    
T Consensus       372 ~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY----~~~~~~t~~~~---------~~g~~~T----  434 (567)
T PLN02479        372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGY----LKNPKANEEAF---------ANGWFHS----  434 (567)
T ss_pred             cccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhh----hcCcccccchh---------cCCceec----
Confidence            46788888875 889986678888764  6799999999999999    99999999998         3689999    


Q ss_pred             CCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          101 PGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       101 ~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                           ||++++|++|++ |+||.||+||+.|..
T Consensus       435 -----GDl~~~~~~g~l~~~GR~~d~i~~~G~~  462 (567)
T PLN02479        435 -----GDLGVKHPDGYIEIKDRSKDIIISGGEN  462 (567)
T ss_pred             -----ceeEEEcCCccEEEeccccceEEeCCEE
Confidence                 999999999999 999999999998853

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.73  E-value=1.4e-17  Score=132.46  Aligned_cols=87  Identities=24%  Similarity=0.269  Sum_probs=74.9

Q ss_pred             CCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCC
Q 032813           22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEP  101 (133)
Q Consensus        22 ~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~  101 (133)
                      ...++|+|+++++++|+| +++++++.|+.|||+++|+.++.||    ++.+......+         .++||+|     
T Consensus       358 ~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy----~~~~~~~~~~~---------~~g~~~T-----  418 (545)
T PRK07768        358 RLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPGY----LTMDGFIPAQD---------ADGWLDT-----  418 (545)
T ss_pred             eEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCcccccc----cCCCCCccccc---------CCCeeec-----
Confidence            346899999999999999 6789999999999999999999999    76544332222         4689999     


Q ss_pred             CCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813          102 GRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus       102 ~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                          ||+++++++|++ ++||.||+||+.|.
T Consensus       419 ----GDl~~~~~~g~l~~~GR~~d~i~~~G~  445 (545)
T PRK07768        419 ----GDLGYLTEEGEVVVCGRVKDVIIMAGR  445 (545)
T ss_pred             ----cceEEEecCCEEEEEccccceEEECCE
Confidence                999999999999 99999999999875

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.72  E-value=2.3e-17  Score=132.75  Aligned_cols=85  Identities=25%  Similarity=0.299  Sum_probs=70.1

Q ss_pred             CccccCCCCcEEEEEcCCCCccCCC--CCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCC
Q 032813           24 GSCGTVVRNAELKVIDPEIGASLPH--NQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEP  101 (133)
Q Consensus        24 ~~vG~p~p~~~v~i~d~~~g~~~~~--g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~  101 (133)
                      +..+.+++  .+.+++++.+++++.  ++.|||+|+||+++.||    |++|+.+++.|         .+|||+|     
T Consensus       365 g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY----~~~~~~t~~~f---------~~gw~~T-----  424 (579)
T PLN03102        365 GVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGY----LKNPKATSEAF---------KHGWLNT-----  424 (579)
T ss_pred             Cccccccc--ceEEeccccccccCCCCCCceEEEEECcchhhhh----cCChhhhHhhh---------ccCceec-----
Confidence            33444444  455666556777764  36899999999999999    99999999998         3689999     


Q ss_pred             CCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          102 GRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       102 ~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                          ||+|++|+||+| |+||+||+||++|..
T Consensus       425 ----GDlg~~d~dG~l~i~GR~~d~i~~~G~~  452 (579)
T PLN03102        425 ----GDVGVIHPDGHVEIKDRSKDIIISGGEN  452 (579)
T ss_pred             ----CceEEEcCCCeEEEEeccCcEEEECCEE
Confidence                999999999999 999999999998753

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.71  E-value=4.7e-17  Score=129.41  Aligned_cols=87  Identities=28%  Similarity=0.341  Sum_probs=74.8

Q ss_pred             CCccccCCCC-cEEEEEcCCCCccCCC-C-CCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccC
Q 032813           23 SGSCGTVVRN-AELKVIDPEIGASLPH-N-QPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQA   99 (133)
Q Consensus        23 ~~~vG~p~p~-~~v~i~d~~~g~~~~~-g-~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~   99 (133)
                      ..++|.+++. ..++|+|++++++++. | +.|||+|+|++++.||    +++++.+.+.|.         ++||+|   
T Consensus       357 ~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY----~~~~~~~~~~~~---------~g~~~T---  420 (545)
T PRK08162        357 KARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGY----LKNPKATEEAFA---------GGWFHT---  420 (545)
T ss_pred             cCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhh----cCChhhhHHHhh---------CCCccc---
Confidence            3567776653 4688999767888876 3 4699999999999999    999999999883         689999   


Q ss_pred             CCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813          100 EPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus       100 ~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                            ||++++|++|++ |+||.||+||++|.
T Consensus       421 ------GDl~~~d~dg~l~~~GR~~~~i~~~G~  447 (545)
T PRK08162        421 ------GDLAVLHPDGYIKIKDRSKDIIISGGE  447 (545)
T ss_pred             ------CceEEEcCCccEEEEecccceEEeCCE
Confidence                  999999999999 99999999999985

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.71  E-value=2.8e-17  Score=140.53  Aligned_cols=101  Identities=21%  Similarity=0.399  Sum_probs=78.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++....     ...+..++|+|+|++++++.+. .+    .++.|||+|+|++++.||    |++++...  +
T Consensus       941 ~TE~~~~~~~~~~-----~~~~~~~vG~p~~g~~~~~~~~-~~----~~~~Gel~v~g~~~~~gY----~~~~~~~~--~ 1004 (1140)
T PRK06814        941 VTETAPVIALNTP-----MHNKAGTVGRLLPGIEYRLEPV-PG----IDEGGRLFVRGPNVMLGY----LRAENPGV--L 1004 (1140)
T ss_pred             cccccceEEecCC-----CCCCCCcCCccCCCCeEEEeec-CC----CCCceEEEEeCCCcchhh----cCCCCCCc--c
Confidence            5898866554321     1245679999999999999873 22    367899999999999999    87664321  1


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .  .    ..+|||+|         ||++++|+||++ ++||.||+||++|.+
T Consensus      1005 ~--~----~~~g~~~T---------GDl~~~d~dG~l~~~GR~~d~i~~~G~~ 1042 (1140)
T PRK06814       1005 E--P----PADGWYDT---------GDIVTIDEEGFITIKGRAKRFAKIAGEM 1042 (1140)
T ss_pred             c--c----CCCCeEec---------CCEEEECCCCeEEEEecccCeeeeCCEE
Confidence            1  0    04689999         999999999999 999999999999853

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.69  E-value=6.5e-17  Score=130.16  Aligned_cols=108  Identities=21%  Similarity=0.284  Sum_probs=88.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCC-CCeEEEEEcC---ccccccccccCCCchhh
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHN-QPGEICIRGP---QIMKVAELEFWSDGGHD   76 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g-~~Gel~i~gp---~~~~GY~~~~~~~~~~t   76 (133)
                      |||++..++.......   +.++++++.|.+++.+.|+| ++|++++.+ +.|+|+++.|   ++++.|    |+|+++.
T Consensus       394 qtEtG~~~i~~~~g~~---p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~P~~~~r~~----~~n~erf  465 (626)
T KOG1175|consen  394 QTETGGICITPKPGKL---PIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKPPWPPGMFRTL----WGNHERF  465 (626)
T ss_pred             eeccCceeeeccCCCC---CcCccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeCCCCccccccc----cCCHHHh
Confidence            6899988777653221   57889999999999999999 589999887 8899999974   678888    9999865


Q ss_pred             HHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           77 EEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        77 ~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                      ..++...      ..|+|.|         ||.|++|+||++ ++||.||+||++|.
T Consensus       466 ~~~yf~k------~pg~y~t---------GD~~~rd~dGY~~i~GR~DDviNvsGh  506 (626)
T KOG1175|consen  466 RAAYFKK------FPGYYFT---------GDGGRRDEDGYYWILGRVDDVINVSGH  506 (626)
T ss_pred             hhhhccc------CCceEEe---------cCceEEcCCceEEEEecccccccccce
Confidence            5554322      2467777         999999999999 99999999999885

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.69  E-value=5.5e-17  Score=130.16  Aligned_cols=116  Identities=19%  Similarity=0.280  Sum_probs=83.4

Q ss_pred             CCCCCcccccccCCCCCC---CCCCCCccccCCCCcEEEEEcCCCCccCC--CCCCeEEEEEcCccccccccccCCCchh
Q 032813            1 MTEAGPVLSMCLGFAKQP---FPTKSGSCGTVVRNAELKVIDPEIGASLP--HNQPGEICIRGPQIMKVAELEFWSDGGH   75 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~---~~~~~~~vG~p~p~~~v~i~d~~~g~~~~--~g~~Gel~i~gp~~~~GY~~~~~~~~~~   75 (133)
                      +||++..++.........   ......++|++.++++++|+| + +.+++  .+..|||+|+|++++.||    |++++.
T Consensus       332 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY----~~~~~~  405 (576)
T PRK05620        332 MTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASY----YHSPTE  405 (576)
T ss_pred             ccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccc----cCCccc
Confidence            588876554432110000   011234789999999999999 4 66664  468899999999999999    999988


Q ss_pred             h----HHHHhhhhc-----ccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           76 D----EEIIKLNRL-----TMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        76 t----~~~f~~~~~-----~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +    +..|..+..     .+. .++||+|         ||++++++||++ |+||.||+||++|..
T Consensus       406 t~~~~~~~f~~~~~~~~~~~~~-~~g~~~T---------GD~~~~~~dg~l~~~GR~~d~i~~~G~~  462 (576)
T PRK05620        406 EGGGAASTFRGEDVEDANDRFT-ADGWLRT---------GDVGSVTRDGFLTIHDRARDVIRSGGEW  462 (576)
T ss_pred             cccccccccccccchhhhcccc-cCCcEec---------CceEEEcCCceEEEEechhhhhhcCCEE
Confidence            7    444431110     011 3578888         999999999999 999999999998753

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.66  E-value=1.9e-16  Score=123.69  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=72.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...       .....++|+|+++++++|++            |||+|+|+.++.||    |++++.+....
T Consensus       273 ~tE~~~~~~~~~-------~~~~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~gY----~~~~~~~~~~~  329 (458)
T PRK09029        273 LTEMASTVCAKR-------ADGLAGVGSPLPGREVKLVD------------GEIWLRGASLALGY----WRQGQLVPLVN  329 (458)
T ss_pred             ccccCcceeccC-------CCCCCCCCCCCCCCEEEEeC------------CEEEEecCceeeee----ecCcccccccc
Confidence            578765433321       11235699999999999986            89999999999999    88888765332


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .++||+|         ||+|++| +|++ |+||+||+||++|..
T Consensus       330 ---------~~~~~~T---------GD~~~~~-~g~l~~~gR~~d~i~~~G~~  363 (458)
T PRK09029        330 ---------DEGWFAT---------RDRGEWQ-NGELTILGRLDNLFFSGGEG  363 (458)
T ss_pred             ---------CCCccCC---------CCcEEEe-CCEEEEecccccceeeCCEE
Confidence                     4689999         9999999 9999 999999999999853

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.65  E-value=2.9e-16  Score=125.12  Aligned_cols=84  Identities=24%  Similarity=0.344  Sum_probs=70.9

Q ss_pred             CCccccCCCCcEEEEEcCCCCccCCCC--CCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCC
Q 032813           23 SGSCGTVVRNAELKVIDPEIGASLPHN--QPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAE  100 (133)
Q Consensus        23 ~~~vG~p~p~~~v~i~d~~~g~~~~~g--~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~  100 (133)
                      ..++|+|+++++++|+| +++++++.+  ..|||+|+|++++.||    |++.   ...+.        .++||+|    
T Consensus       355 ~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy----~~~~---~~~~~--------~~~~~~T----  414 (542)
T PRK06018        355 LQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAY----YRVD---GEILD--------DDGFFDT----  414 (542)
T ss_pred             cccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhh----hcCc---ccEec--------CCcEEEc----
Confidence            35799999999999999 578888763  6799999999999999    7632   22222        4689999    


Q ss_pred             CCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813          101 PGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus       101 ~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                           ||+++++++|++ ++||.+|+||++|.
T Consensus       415 -----GDl~~~~~~g~~~~~GR~~d~i~~~G~  441 (542)
T PRK06018        415 -----GDVATIDAYGYMRITDRSKDVIKSGGE  441 (542)
T ss_pred             -----CCEEEEcCCccEEEEecCCCeEEECCE
Confidence                 999999999999 99999999999885

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.65  E-value=7.8e-16  Score=127.24  Aligned_cols=111  Identities=17%  Similarity=0.132  Sum_probs=77.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCC--CeEEEEEcCc--cccccccccCCCchhh
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQ--PGEICIRGPQ--IMKVAELEFWSDGGHD   76 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~--~Gel~i~gp~--~~~GY~~~~~~~~~~t   76 (133)
                      +||++..+.....    ......+++|+|+++++++|+| ++|++++.|+  .|||+|+++.  ...+|    +++. .+
T Consensus       506 ~TE~~~~~~~~~~----~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~----~~~~-~~  575 (728)
T PLN03052        506 GTELGGGFVTGSL----LQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTL----LNAD-HY  575 (728)
T ss_pred             ChhhCcccccCCC----CCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccc----cCch-hh
Confidence            5888654333211    1124567899999999999999 6899999986  5999998653  33466    6653 33


Q ss_pred             HHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           77 EEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        77 ~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ...|. ..+... ...|++|         ||++++|++|+| |+||+||+||+.|..
T Consensus       576 ~~yf~-~~p~~~-g~~~~~t---------GDl~~~d~dG~l~i~GR~Dd~I~~~G~r  621 (728)
T PLN03052        576 KVYFK-GMPVFN-GKILRRH---------GDIFERTSGGYYRAHGRADDTMNLGGIK  621 (728)
T ss_pred             hhhhh-cCCCCC-CCEEEec---------CceEEECCCCeEEEEecCCCEEeeCCEE
Confidence            33442 111110 1236777         999999999999 999999999999863

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.65  E-value=7.6e-16  Score=119.04  Aligned_cols=100  Identities=18%  Similarity=0.233  Sum_probs=76.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++....   .....+ .++|+|+++++++|...+.      ++.|||+|+++.++.||    |++++.+...+
T Consensus       252 ~tE~~~~~~~~~~---~~~~~~-~~~G~~~~~~~~~i~~~~~------~~~Gel~v~~~~~~~gy----~~~~~~~~~~~  317 (436)
T TIGR01923       252 MTETCSQVTTATP---EMLHAR-PDVGRPLAGREIKIKVDNK------EGHGEIMVKGANLMKGY----LYQGELTPAFE  317 (436)
T ss_pred             CCccchhccCcCc---cccccc-cCCCccCCCcEEEEEeCCC------CCceEEEEECCccchhh----CCChhhhhhhh
Confidence            5888765443321   111122 2599999999999943122      27799999999999999    89887776655


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .++||+|         ||++++++||++ ++||.+|+||++|..
T Consensus       318 ---------~~~~~~T---------GD~~~~~~dg~~~~~GR~~d~i~~~G~~  352 (436)
T TIGR01923       318 ---------QQGWFNT---------GDIGELDGEGFLYVLGRRDDLIISGGEN  352 (436)
T ss_pred             ---------cCCCeec---------cceEEEcCCCCEEEeccccCeEEeCCEe
Confidence                     4689999         999999999999 999999999999863

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.63  E-value=7.7e-16  Score=130.85  Aligned_cols=98  Identities=22%  Similarity=0.231  Sum_probs=71.7

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCc-EEEEE-----------cCCCC--ccCCCCCCeEEEEEcCccccccc
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNA-ELKVI-----------DPEIG--ASLPHNQPGEICIRGPQIMKVAE   66 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~-~v~i~-----------d~~~g--~~~~~g~~Gel~i~gp~~~~GY~   66 (133)
                      |||++..++ ..      ...+.+++|+|+|++ +++|.           | ++|  ++++.|+.|||+++++.    | 
T Consensus       753 ~TE~~~~~~-~~------~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d-~~G~~~~~~~ge~Gel~~~~~~----~-  819 (994)
T PRK07868        753 TTDGQAVLA-NV------SGAKIGSKGRPLPGAGRVELAAYDPEHDLILED-DRGFVRRAEVNEVGVLLARARG----P-  819 (994)
T ss_pred             ccccccccc-cc------CCCCCcccCCccCCCCceeEEEecCcCCceeec-CCceEEEcCCCCceEEEEecCC----C-
Confidence            689765332 11      123567999999997 66653           3 345  67889999999999984    4 


Q ss_pred             cccCCCchhhHH--HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813           67 LEFWSDGGHDEE--IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus        67 ~~~~~~~~~t~~--~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                         + +|+.+..  .|.       ..+|||+|         ||+|++|+||+| |+||+|||||+.+.
T Consensus       820 ---~-~p~~t~~~~~~~-------~~dgw~~T---------GDlg~~d~dG~l~~~GR~dd~Ik~~G~  867 (994)
T PRK07868        820 ---I-DPTASVKRGVFA-------PADTWIST---------EYLFRRDDDGDYWLVDRRGSVIRTARG  867 (994)
T ss_pred             ---C-ChhhhhHhcccc-------cCCEEEec---------cceEEEcCCCCEEEeccCCCEEEeCCc
Confidence               4 4544332  231       13689999         999999999999 99999999999664

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.60  E-value=4.4e-15  Score=119.74  Aligned_cols=72  Identities=15%  Similarity=0.084  Sum_probs=59.4

Q ss_pred             cCCCCCCeEEE--EEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEee
Q 032813           45 SLPHNQPGEIC--IRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKR  121 (133)
Q Consensus        45 ~~~~g~~Gel~--i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR  121 (133)
                      ++++|+.|||+  |++++++.||     ++++.+.+.|..+..  ...++||+|         ||+|++|+||+| ++||
T Consensus       397 ~~~~g~~Gel~~~i~~~~~~~GY-----~~~~~t~~~~~~~~~--~~~~~~~~T---------GDlg~~~~dG~l~~~GR  460 (600)
T PRK08279        397 KVKPGEVGLLIGRITDRGPFDGY-----TDPEASEKKILRDVF--KKGDAWFNT---------GDLMRDDGFGHAQFVDR  460 (600)
T ss_pred             cCCCCCceeEEEEecCccccccc-----CCchhhHHHHhhccc--CCCCceEee---------cceEEEcCCccEEEecc
Confidence            57889999998  7799999998     677888888753211  113579999         999999999999 9999


Q ss_pred             cCCeEEeCCCC
Q 032813          122 KKVWVRFDPLF  132 (133)
Q Consensus       122 ~dd~Iki~~~~  132 (133)
                      .||+||++|..
T Consensus       461 ~~d~ik~~G~~  471 (600)
T PRK08279        461 LGDTFRWKGEN  471 (600)
T ss_pred             cCCeEEECCcc
Confidence            99999999864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.58  E-value=5.2e-15  Score=120.03  Aligned_cols=87  Identities=24%  Similarity=0.196  Sum_probs=79.2

Q ss_pred             CCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCC
Q 032813           23 SGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPG  102 (133)
Q Consensus        23 ~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~  102 (133)
                      ..++|+|+++.++.|+| +.++++|.|..|||+|.|..+++||    +++|+.|+++|..        +.+|+|      
T Consensus       540 ~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy----~~~p~lt~~~f~~--------~~~y~t------  600 (642)
T COG1020         540 RVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGY----LNRPDLTAERFIA--------LRLYRT------  600 (642)
T ss_pred             CCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhh----cCChhhhHHHhhh--------ccCccC------
Confidence            56899999999999999 7899999999999999999999999    9999999999972        114455      


Q ss_pred             CCCCcEEEEcCCCeE-EEeecCCeEEeCCC
Q 032813          103 RWAFDLALRTRAGYE-LKKRKKVWVRFDPL  131 (133)
Q Consensus       103 ~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~  131 (133)
                         ||++++.+||.+ ++||.|++||++|.
T Consensus       601 ---gD~~r~~~dg~~e~lgr~D~qvki~g~  627 (642)
T COG1020         601 ---GDLARPLADGALEYLGRKDSQVKIRGF  627 (642)
T ss_pred             ---CCeeeECCCCeEEEeccccceeEeceE
Confidence               999999999999 99999999999874

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.56  E-value=1.7e-14  Score=113.86  Aligned_cols=85  Identities=20%  Similarity=0.102  Sum_probs=71.8

Q ss_pred             cCCCCcEEEEEcCCCCccCCCCCC--eEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCC
Q 032813           28 TVVRNAELKVIDPEIGASLPHNQP--GEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWA  105 (133)
Q Consensus        28 ~p~p~~~v~i~d~~~g~~~~~g~~--Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~t  105 (133)
                      ++.++..++|++ +++++++.|+.  |+|+ +++.++.||    +++++.+++.|...     ...+||+|         
T Consensus       353 ~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy----~~~~~~t~~~f~~~-----~~~~~~~T---------  412 (533)
T PRK07798        353 RFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGY----YKDPEKTAETFPTI-----DGVRYAIP---------  412 (533)
T ss_pred             ccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccc----cCChhhhHHhhccC-----CCCceEEc---------
Confidence            788999999999 57889999987  6665 556789999    99999999988521     12468998         


Q ss_pred             CcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          106 FDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       106 GD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ||++++|++|+| ++||+||+||++|.+
T Consensus       413 GD~~~~~~~g~l~~~GR~~~~i~~~G~~  440 (533)
T PRK07798        413 GDRARVEADGTITLLGRGSVCINTGGEK  440 (533)
T ss_pred             CcEEEEcCCCcEEEEccccceEecCCEE
Confidence            999999999999 999999999998854

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.56  E-value=7.2e-15  Score=111.61  Aligned_cols=72  Identities=22%  Similarity=0.251  Sum_probs=61.5

Q ss_pred             ccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCC
Q 032813           25 SCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRW  104 (133)
Q Consensus        25 ~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~  104 (133)
                      ..|+|+++++++|.+            |||+++|+.++.||    +++++.+  .|.        .++||+|        
T Consensus       193 ~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY----~~~~~~~--~~~--------~~g~~~T--------  238 (358)
T PRK07824        193 YDGVPLDGVRVRVED------------GRIALGGPTLAKGY----RNPVDPD--PFA--------EPGWFRT--------  238 (358)
T ss_pred             cCceeCCCCEEEecC------------CEEEEecCcccccc----CCCcccc--ccc--------CCCceec--------
Confidence            368999999999843            89999999999999    8887643  332        4579999        


Q ss_pred             CCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          105 AFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       105 tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                       ||++++ ++|+| ++||.||+||++|.+
T Consensus       239 -GDl~~~-~~g~l~i~GR~~d~i~~~G~~  265 (358)
T PRK07824        239 -DDLGAL-DDGVLTVLGRADDAISTGGLT  265 (358)
T ss_pred             -ccEEEE-eCCEEEEEeccCCeEEECCEE
Confidence             999999 89999 999999999998864

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.29  E-value=1.2e-11  Score=95.72  Aligned_cols=78  Identities=18%  Similarity=0.091  Sum_probs=60.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||+++.....       ......++|+|+|++++++.+ +      .++.|||++++.                     
T Consensus       245 ~tE~~~~~~~~-------~~~~~~~~G~p~~~~~~~~~~-~------~~~~gel~v~~~---------------------  289 (414)
T PRK08308        245 CSEAGCVSICP-------DMKSHLDLGNPLPHVSVSAGS-D------ENAPEEIVVKMG---------------------  289 (414)
T ss_pred             ccccCCeeecC-------CCCCCCccCccCCCeEEEEec-C------CCCCceEEEEcC---------------------
Confidence            58887433211       123457899999999999876 2      356799999642                     


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                                ++||+|         ||+|++|+||++ ++||.||+||++|..
T Consensus       290 ----------~~~~~T---------GDl~~~~~dg~l~~~GR~~~~ik~~G~~  323 (414)
T PRK08308        290 ----------DKEIFT---------KDLGYKSERGTLHFMGRMDDVINVSGLN  323 (414)
T ss_pred             ----------CceEEC---------CceEEECCCccEEEecccCCeEEECCEE
Confidence                      378999         999999999999 999999999999863

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.11  E-value=1.2e-10  Score=90.74  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=53.8

Q ss_pred             CcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEE
Q 032813           32 NAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALR  111 (133)
Q Consensus        32 ~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~  111 (133)
                      ...+.|+|+++++++++|+.|||++++..                +++|         ..+||+|         ||++++
T Consensus       254 ~~~~eivd~~~g~~v~~Ge~Gelvvt~~~----------------~~~~---------p~~ry~T---------GDl~~~  299 (422)
T TIGR02155       254 HFYPEIIDPHTGEVLPDGEEGELVFTTLT----------------KEAL---------PVIRYRT---------RDLTRL  299 (422)
T ss_pred             eeEEEEECCCCCCCCCCCCeeEEEEecCC----------------cccc---------ceeeEEc---------CcEEEE
Confidence            46778999778999999999999998642                1222         2478999         999999


Q ss_pred             cCC-C-----eE-EEeecCCeEEeCCCC
Q 032813          112 TRA-G-----YE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       112 d~d-G-----~l-~~GR~dd~Iki~~~~  132 (133)
                      +++ |     ++ +.||.||+||+.|.+
T Consensus       300 ~~~~Gr~~~~~~~i~GR~~d~i~~~G~~  327 (422)
T TIGR02155       300 LPGTARTMRRMDRITGRSDDMLIIRGVN  327 (422)
T ss_pred             ECCCCCcccccccccCccCCeEEECCEE
Confidence            886 5     56 999999999998753

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=98.39  E-value=1e-06  Score=69.56  Aligned_cols=72  Identities=17%  Similarity=0.040  Sum_probs=48.5

Q ss_pred             CCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEE
Q 032813           31 RNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLAL  110 (133)
Q Consensus        31 p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~  110 (133)
                      +.+.+.|+|+++++++++|+.|||++..-.-..        .++    .+         .---|+|         ||+++
T Consensus       258 d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~--------~r~----~~---------PliRYrt---------gD~~~  307 (445)
T TIGR03335       258 DLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPG--------ERC----GS---------LLINYDT---------EDTTV  307 (445)
T ss_pred             CceEEEEEcCCCCCCCcCCCceEEEEEecCCCC--------ccC----Cc---------eEEEeec---------CceEE
Confidence            346789999877888999999999997642100        000    00         0012566         99998


Q ss_pred             EcC-C----Ce----E-EEeecCCeEEeCCCC
Q 032813          111 RTR-A----GY----E-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       111 ~d~-d----G~----l-~~GR~dd~Iki~~~~  132 (133)
                      +.. +    |.    + .+||.||||++.|.+
T Consensus       308 ~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~  339 (445)
T TIGR03335       308 VISRDRCPCGRTHMRILNPEREAETIWISGVP  339 (445)
T ss_pred             EecCCCCCCCCCcceeCCCcccCceEEECCEE
Confidence            632 2    32    5 679999999999875

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=98.25  E-value=8.3e-06  Score=65.53  Aligned_cols=73  Identities=15%  Similarity=0.101  Sum_probs=55.6

Q ss_pred             cCCCCCCeEEEEE--cCcc---ccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-E
Q 032813           45 SLPHNQPGEICIR--GPQI---MKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-L  118 (133)
Q Consensus        45 ~~~~g~~Gel~i~--gp~~---~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~  118 (133)
                      +|++||+|.|+-+  ....   |.||    .+..++|++....+-..  ..|-||.|         ||+-.+|+.|+| |
T Consensus       442 ~~~~GEpGlLv~~i~~k~P~~~F~GY----~g~~~~t~kKl~rDVFk--kGD~~f~t---------GDlLv~D~~GylYF  506 (649)
T KOG1179|consen  442 PCPPGEPGLLVGKIVQKNPLRSFLGY----AGPKKATEKKLLRDVFK--KGDVYFNT---------GDLLVADELGYLYF  506 (649)
T ss_pred             ECCCCCCceEEEEeccCCchhhhccc----cCchhhhhhhhHHhhhc--cCcEEEee---------CcEEEEecCCcEEE
Confidence            6788999977543  2233   7899    88788887776544332  24568888         999999999999 9


Q ss_pred             EeecCCeEEeCCCC
Q 032813          119 KKRKKVWVRFDPLF  132 (133)
Q Consensus       119 ~GR~dd~Iki~~~~  132 (133)
                      .+|..|.+..+|-|
T Consensus       507 ~DRtGDTFRWKGEN  520 (649)
T KOG1179|consen  507 KDRTGDTFRWKGEN  520 (649)
T ss_pred             eccCCCceeecCCc
Confidence            99999999887754

>PTZ00297 pantothenate kinase; Provisional

Probab=98.08  E-value=6.6e-06  Score=72.92  Aligned_cols=63  Identities=13%  Similarity=0.030  Sum_probs=48.6

Q ss_pred             cccCCCCcEEEEEcC-CCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCC
Q 032813           26 CGTVVRNAELKVIDP-EIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRW  104 (133)
Q Consensus        26 vG~p~p~~~v~i~d~-~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~  104 (133)
                      .|+|+|+++++|.+. +.+..   ...|||+++       |    +++|++|++.+          ++|+          
T Consensus       802 ~G~PlpgvEvKI~~~~E~~~~---~~~GEIlvr-------~----~kdpe~T~e~~----------~gW~----------  847 (1452)
T PTZ00297        802 DGTPAPSLQVDLEPFDEPSDG---AGIGQLVLA-------K----KGEPRRTLPIA----------AQWK----------  847 (1452)
T ss_pred             CCeecCceEEEEcccccccCC---CCCCeEEEE-------E----CCChHHHHHhh----------CcCc----------
Confidence            499999999999873 32221   235999994       6    68999998743          3664          


Q ss_pred             CCcEEEEcCCCeE-EEeecCCeEEeCC
Q 032813          105 AFDLALRTRAGYE-LKKRKKVWVRFDP  130 (133)
Q Consensus       105 tGD~g~~d~dG~l-~~GR~dd~Iki~~  130 (133)
                              +||+| |+||+||+||..+
T Consensus       848 --------~dG~L~IidRkKdlikls~  866 (1452)
T PTZ00297        848 --------RDRTLRLLGPPLGILLPVA  866 (1452)
T ss_pred             --------cCCeEEEEeccccceECCC
Confidence                    47999 9999999999765

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=97.94  E-value=4.3e-05  Score=65.37  Aligned_cols=96  Identities=11%  Similarity=0.070  Sum_probs=68.8

Q ss_pred             cccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhc-ccCCCCcccccccCCCCCC
Q 032813           26 CGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRL-TMGSSLGWASKAQAEPGRW  104 (133)
Q Consensus        26 vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~-~~~~~~gw~~t~~~~~~~~  104 (133)
                      .|+..+++++.|++||+-.+|..|+.||||+++.+-+.+|++.  .++ .....|...-. .......|.||        
T Consensus      1155 SG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~--~d~-~~~~~fn~rl~~g~~~~~sy~RT-------- 1223 (1363)
T KOG3628|consen 1155 SGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTI--GDE-LRSNHFNARLSSGDLLGKSYART-------- 1223 (1363)
T ss_pred             CCcccccceeEEeCCccccccccCCcceEEecccccccccccc--Cch-hhhhhhhhhccccccccccceee--------
Confidence            4777889999999999999999999999999999999998654  233 33333421100 00112356666        


Q ss_pred             CCcEEEE------cCCC----eE-EEeecCCeEEeCCCCC
Q 032813          105 AFDLALR------TRAG----YE-LKKRKKVWVRFDPLFF  133 (133)
Q Consensus       105 tGD~g~~------d~dG----~l-~~GR~dd~Iki~~~~~  133 (133)
                       ||+|.+      ++++    .| ++|=.++.+-++|+.|
T Consensus      1224 -G~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h 1262 (1363)
T KOG3628|consen 1224 -GDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRH 1262 (1363)
T ss_pred             -eeeeeeeeeecccccceeeeeEEEeecccceeeecCccc
Confidence             999975      3333    25 8899999999999865

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=97.69  E-value=3.1e-05  Score=60.25  Aligned_cols=28  Identities=14%  Similarity=0.011  Sum_probs=25.9

Q ss_pred             CCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          105 AFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       105 tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |||++++|++|+| |+||+||+||+.|.+
T Consensus       279 tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~  307 (386)
T TIGR02372       279 LQDRLAWDKDGGFTILGRKDEILQVGGVN  307 (386)
T ss_pred             cCceEEEcCCCcEEEecccCCEEEECCEE
Confidence            3999999999999 999999999998853

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.65  E-value=3e-05  Score=66.46  Aligned_cols=35  Identities=9%  Similarity=-0.137  Sum_probs=30.8

Q ss_pred             cCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           98 QAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        98 ~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ...|+|+|||.++.-.+|.+ +.||.|++||++|..
T Consensus       451 ~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~R  486 (1032)
T KOG1178|consen  451 VKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVR  486 (1032)
T ss_pred             chhhcccccccceeecCCCEEEEEeccceEEEccEE
Confidence            44578888999998889999 999999999999864

>PRK09188 serine/threonine protein kinase; Provisional

Probab=97.64  E-value=3.9e-05  Score=59.37  Aligned_cols=25  Identities=12%  Similarity=0.050  Sum_probs=23.4

Q ss_pred             CCcccccccCCCCCCCCcEEEE-cCCCeE-EEeecC
Q 032813           90 SLGWASKAQAEPGRWAFDLALR-TRAGYE-LKKRKK  123 (133)
Q Consensus        90 ~~gw~~t~~~~~~~~tGD~g~~-d~dG~l-~~GR~d  123 (133)
                      .+|||+|         ||+|++ |++|+| |+||.|
T Consensus       207 ~dgW~~T---------GDlg~~~d~dG~l~~~gR~~  233 (365)
T PRK09188        207 SRIWLAT---------GKKVYNFITRGLFSWSDGEG  233 (365)
T ss_pred             cCcEEeC---------CCEEEEEcCCCeEEEEecCc
Confidence            5799999         999998 799999 999998

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=97.24  E-value=0.00066  Score=53.58  Aligned_cols=69  Identities=20%  Similarity=0.280  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEE
Q 032813           31 RNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLAL  110 (133)
Q Consensus        31 p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~  110 (133)
                      +..-+.|+||++++.++.|+.|||++..=.  +..              +         .---|+|         ||+.+
T Consensus       266 D~~~~Ei~dP~t~e~l~dge~GelV~T~L~--~~~--------------~---------PlIRYrt---------gDit~  311 (438)
T COG1541         266 DHFIFEIVDPETGEQLPDGERGELVITTLT--KEG--------------M---------PLIRYRT---------GDITV  311 (438)
T ss_pred             hhceeeeecCCcCccCCCCCeeEEEEEecc--ccC--------------c---------ceEEEEc---------CCeeE
Confidence            456788999999999999999999996421  111              0         0012566         99999


Q ss_pred             EcCC----Ce----E--EEeecCCeEEeCCCCC
Q 032813          111 RTRA----GY----E--LKKRKKVWVRFDPLFF  133 (133)
Q Consensus       111 ~d~d----G~----l--~~GR~dd~Iki~~~~~  133 (133)
                      +.++    |.    +  +.||.|||+++.|+++
T Consensus       312 i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~v  344 (438)
T COG1541         312 ILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNV  344 (438)
T ss_pred             ecccCCCCCCccccccccCcccccEEEECCEEe
Confidence            8772    32    3  8899999999999764

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=97.18  E-value=0.0005  Score=59.15  Aligned_cols=92  Identities=16%  Similarity=0.147  Sum_probs=62.2

Q ss_pred             cccCCCC-cEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCC
Q 032813           26 CGTVVRN-AELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRW  104 (133)
Q Consensus        26 vG~p~p~-~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~  104 (133)
                      +|...|+ +.+.|+++++.+.|.++++|||||.++++..+|    |.-+..|...|......   ..+  .-....++-|
T Consensus       504 ~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~----~al~~~t~~~F~~~~~~---s~~--~~~~n~~FmR  574 (1363)
T KOG3628|consen  504 VLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLF----YALDKQTENTFKATPVE---SSG--KPPSNVPFMR  574 (1363)
T ss_pred             cceecccceEEEEeCCCcccccccCcceeEEEecCCcccce----eeccccccceEEeeecc---ccC--CCCccchhhh
Confidence            5555554 577788888889999999999999999999999    77777777776421110   011  0011223334


Q ss_pred             CCcEEEEcCCCeEEEeecCCeE
Q 032813          105 AFDLALRTRAGYELKKRKKVWV  126 (133)
Q Consensus       105 tGD~g~~d~dG~l~~GR~dd~I  126 (133)
                      ||=+|++.+++.+++|=+.|++
T Consensus       575 tGLlGFv~~gki~vl~~k~d~l  596 (1363)
T KOG3628|consen  575 TGLLGFVHNGKIYVLGLKEDGL  596 (1363)
T ss_pred             hcceeeeeCCeEEEEEechhhh
Confidence            5999999988777555554543

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=95.40  E-value=0.095  Score=40.78  Aligned_cols=55  Identities=22%  Similarity=0.201  Sum_probs=41.3

Q ss_pred             EEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCC
Q 032813           35 LKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRA  114 (133)
Q Consensus        35 v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~d  114 (133)
                      |.|+|+++.++++.|+.|-|-+-.+... .|                         -+..-|         .|+|.+..+
T Consensus       287 V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s~-------------------------p~~IlT---------eDlGvl~~~  331 (365)
T PF04443_consen  287 VIIRDPETLEPLPPGETGLIQVIDLANT-SY-------------------------PGFILT---------EDLGVLHGD  331 (365)
T ss_pred             EEEECCCCCcCCCCCCeeEEEEEccccc-CC-------------------------CcEEEE---------cceeeecCC
Confidence            7888999999999999999988776422 23                         133457         999987654


Q ss_pred             --------CeE-EEeecCC
Q 032813          115 --------GYE-LKKRKKV  124 (133)
Q Consensus       115 --------G~l-~~GR~dd  124 (133)
                              .++ ++||.+.
T Consensus       332 ~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  332 DDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             CCCCCccCCEEEEEeCCCC
Confidence                    268 9999873

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=85.98  E-value=0.66  Score=36.92  Aligned_cols=27  Identities=11%  Similarity=0.150  Sum_probs=20.1

Q ss_pred             CCCCCcEEEEcCC----Ce----E--EEeecCCeEEe
Q 032813          102 GRWAFDLALRTRA----GY----E--LKKRKKVWVRF  128 (133)
Q Consensus       102 ~~~tGD~g~~d~d----G~----l--~~GR~dd~Iki  128 (133)
                      -|+|||++...++    |.    |  +.||.+|+|++
T Consensus       296 RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~  332 (430)
T TIGR02304       296 RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQL  332 (430)
T ss_pred             eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEE
Confidence            3556999887544    32    4  78999999986

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-26
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-25
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		9e-06
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-05
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-05
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-05
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		3e-04

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 56/63 (88%)
Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+MCL FAK+PF  K G+CGTVVRNAE+K++DPE GASLP NQPGEICIRG Q
Sbjct: 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQ 391
Query: 61  IMK 63
           IMK
Sbjct: 392 IMK 394

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 56/63 (88%)
Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+ G SL  NQPGEICIRG Q
Sbjct: 379 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQ 438
Query: 61  IMK 63
           IMK
Sbjct: 439 IMK 441

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 22  KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
           K G+CG VV     K++D + G +L  NQ GE+C++GP IMK
Sbjct: 393 KPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMK 434

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 22  KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
           K G+ G VV   E KV+D + G +L  NQ GE+C+RGP IM
Sbjct: 358 KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 398

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 22  KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
           K G+ G VV   E KV+D + G +L  NQ GE+C+RGP IM
Sbjct: 358 KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 398

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 22  KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
           K G+ G VV   E KV+D + G +L  NQ GE+C+RGP IM
Sbjct: 363 KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 403

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 22  KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
           K G+ G VV   E KV+D + G +L  NQ GE+ +RGP IM
Sbjct: 363 KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIM 403

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	6e-29
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-28
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	9e-25
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	6e-24
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	9e-24
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	8e-17
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-14
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-13
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	8e-13
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-12
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-12
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-11
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-09
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-09
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-09
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-05
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-05
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-05
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-05
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-05
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	9e-04

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  108 bits (273), Expect = 6e-29
 Identities = 49/63 (77%), Positives = 56/63 (88%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+ G SL  NQPGEICIRG Q
Sbjct: 379 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQ 438

Query: 61  IMK 63
           IMK
Sbjct: 439 IMK 441

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  107 bits (270), Expect = 1e-28
 Identities = 50/63 (79%), Positives = 56/63 (88%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEAGPVL+MCL FAK+PF  K G+CGTVVRNAE+K++DPE GASLP NQPGEICIRG Q
Sbjct: 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQ 391

Query: 61  IMK 63
           IMK
Sbjct: 392 IMK 394

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 96.9 bits (242), Expect = 9e-25
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTEA P+++            KS + G  + + ELKVI  E G  L   + GEI IRGP 
Sbjct: 337 MTEACPMVTTNPPLR----LDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPN 392

Query: 61  IMK 63
           I K
Sbjct: 393 IFK 395

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 94.6 bits (236), Expect = 6e-24
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE    + +           K G+ G VV   + KVID +   SL  N+ GE+C++GP 
Sbjct: 344 LTETTSAIIITP-----EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398

Query: 61  IMK 63
           +MK
Sbjct: 399 LMK 401

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 94.2 bits (235), Expect = 9e-24
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE    + +           K G+ G VV   E KV+D + G +L  NQ GE+C+RGP 
Sbjct: 342 LTETTSAILITP-----EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 396

Query: 61  IMK 63
           IM 
Sbjct: 397 IMS 399

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 74.5 bits (184), Expect = 8e-17
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE     S              G+ G  +     +V DPE G  LP    G I ++GP 
Sbjct: 302 MTETNMNTSNPY-----DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPN 356

Query: 61  IMK 63
           + K
Sbjct: 357 VFK 359

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
            +E   + +        P+  +  S G  +    + V+D E    LP  + GEI +RGP 
Sbjct: 304 QSETSGLSTFA------PYRDRPKSAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPT 356

Query: 61  IMK 63
           + K
Sbjct: 357 VFK 359

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE+    ++ L    +    K+GS G      ++ V   + G    H + GE+ I+   
Sbjct: 317 LTESCGGGTLLLS---EDALRKAGSAGRATMFTDVAVRGDD-GVIREHGE-GEVVIKSDI 371

Query: 61  IMK 63
           ++K
Sbjct: 372 LLK 374

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 63.0 bits (154), Expect = 8e-13
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIG--ASLPHNQPGEICIRG 58
           MTE     S+           ++G+ G  +   EL++++ +    A+L     GEI +RG
Sbjct: 306 MTETLMNTSVRA-----DGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG 360

Query: 59  PQIMK 63
           P +  
Sbjct: 361 PNLFT 365

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 11/66 (16%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGAS--LPHNQPGEICIRG 58
            TEA   L M           K+G+       +E++++    G    + + + GE+ +  
Sbjct: 306 TTEAMNSLYMR--------QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357

Query: 59  P-QIMK 63
                 
Sbjct: 358 SDSAFV 363

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           MTE             +    +  + G    N ++K+ +P           GE+ I+G  
Sbjct: 307 MTETCSQFLTATP---EMLHARPDTVGMPSANVDVKIKNPNKE------GHGELMIKGAN 357

Query: 61  IMK 63
           +M 
Sbjct: 358 VMN 360

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
            TE   +         +    + G+ G  V   E+++ D   G ++P  + G++ I+GP 
Sbjct: 334 STEMLHIFLSN-----RAGAVEYGTTGRPVPGYEIELRDEA-GHAVPDGEVGDLYIKGPS 387

Query: 61  IMK 63
              
Sbjct: 388 AAV 390

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGT-VVRNAELKVIDPEIGASLPHNQPGEICIRGP 59
           M E     +               + G  +  + E+K++D +    +P  + G +  RGP
Sbjct: 341 MAEGLVNYT----RLDDSDEQIFTTQGRPISSDDEIKIVDEQ-YREVPEGEIGMLATRGP 395

Query: 60  QIMK 63
               
Sbjct: 396 YTFC 399

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVR-NAELKVIDPEIGASLPHNQPGEICIRGP 59
           M E     +               + G  +  + E+ V D E G  LP  + G +  RGP
Sbjct: 336 MAEGLVNYT----RLDDSAEKIIHTQGYPMCPDDEVWVADAE-GNPLPQGEVGRLMTRGP 390

Query: 60  QIMK 63
              +
Sbjct: 391 YTFR 394

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 52.5 bits (127), Expect = 3e-09
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 6/64 (9%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVR-NAELKVIDPEIGASLPHNQPGEICIRGP 59
           M E     +        P      + G  +    E +V D      +   + G +  RGP
Sbjct: 332 MAEGLVNYT----RLDDPEEIIVNTQGKPMSPYDESRVWDDH-DRDVKPGETGHLLTRGP 386

Query: 60  QIMK 63
             ++
Sbjct: 387 YTIR 390

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 25  SCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
           S G  ++  E+K+IDP+       +Q GEI ++   + K
Sbjct: 375 SSGNPIQ--EVKIIDPDTLIPCDFDQVGEIWVQSNSVAK 411

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 16/88 (18%)

Query: 1   MTEAGPVLSMCL---GFAKQPFPTKS---GSCGTVVRNAELKVIDPEIGASLPHN--QPG 52
           +TE  PV+                K       G  +    L+V D E G  +P +    G
Sbjct: 326 LTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALG 384

Query: 53  EICIRGPQIMK-------VAELEFWSDG 73
           E+ ++GP I                 DG
Sbjct: 385 EVQLKGPWITGGYYGNEEATRSALTPDG 412

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 25  SCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
           S   + R+  ++++D +     P    GEI + G  +  
Sbjct: 395 SYM-LPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVAN 432

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP 59
            TE G    +           K G  GT     ++++ID + G  LP    G+I IR  
Sbjct: 356 QTETGLTCMVSKTM-----KIKPGYMGTAASCYDVQIIDDK-GNVLPPGTEGDIGIRVK 408

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
            TE    ++            K GS G      +++++D + G      + GEI I   +
Sbjct: 375 QTETVVTIATFPWM-----EPKPGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVINTME 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.94
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.93
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.93
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.93
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.92
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.92
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.92
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.92
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.92
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.92
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.91
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.91
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.91
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.91
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.91
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.91
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.9
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.9
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.9
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.9
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.9
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.9
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.9
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.9
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.9
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.89
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.89
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.89
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.88
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.85
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.85
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.58
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.51
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.49
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.46
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	98.8
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	94.16
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	93.87
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	92.26

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.94  E-value=4.4e-27  Score=185.80  Aligned_cols=111  Identities=51%  Similarity=0.847  Sum_probs=96.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++............+.+++|+|+++++++|+|++++++++.|+.|||+|+||+++.||    |++|+.|++.|
T Consensus       332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY----~~~p~~t~~~~  407 (536)
T 3ni2_A          332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGY----LNDPEATSRTI  407 (536)
T ss_dssp             CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEE----TTCHHHHHHHB
T ss_pred             ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhh----cCChhHHHhhc
Confidence            69998765544222223334567899999999999999988899999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .+|||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       408 ~--------~~g~~~T---------GDl~~~~~dG~l~~~GR~dd~ik~~G~~  443 (536)
T 3ni2_A          408 D--------KEGWLHT---------GDIGYIDDDDELFIVDRLKELIKYKGFQ  443 (536)
T ss_dssp             C--------TTSCEEE---------EEEEEECTTSCEEEEEECSCCEEETTEE
T ss_pred             c--------CCCceEc---------ccEEEEcCCceEEEEecccceEEECCEE
Confidence            5        5799999         999999999999 999999999999864

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.93  E-value=1.1e-26  Score=182.41  Aligned_cols=106  Identities=25%  Similarity=0.314  Sum_probs=93.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++..     .......+++|+|+|+++++|+|+++++++++|++|||+|+||+++.||    |++|+.|+++|
T Consensus       302 ~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~f  372 (503)
T 4fuq_A          302 MTETNMNTSNP-----YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGY----WRMPEKTKSEF  372 (503)
T ss_dssp             ETTTEECBCCC-----SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCB----TTCHHHHHHTB
T ss_pred             ccccCcccccC-----CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhh----cCChhhhHhhh
Confidence            58987654321     1234567899999999999999988899999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .+|||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       373 ~--------~~g~~~T---------GDl~~~~~dG~l~~~GR~dd~ik~~G~~  408 (503)
T 4fuq_A          373 R--------DDGFFIT---------GDLGKIDERGYVHILGRGKDLVITGGFN  408 (503)
T ss_dssp             C--------TTSCEEE---------EEEEEECTTCEEEECCSSTTCEEETTEE
T ss_pred             C--------CCCCeEc---------ceeEEEcCCCcEEEEecCCCEEEECCEE
Confidence            6        5799999         999999999999 999999999999864

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.93  E-value=1.9e-26  Score=183.43  Aligned_cols=117  Identities=14%  Similarity=0.030  Sum_probs=85.2

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++..... .........++|+|+++++++|+| ++++++++|++|||+|+||+++.||    |++|+.|+++|
T Consensus       361 ~TE~~~~~~~~~~~-~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY----~~~~~~t~~~f  434 (570)
T 4gr5_A          361 PAESMGFTTHHAVV-AGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGY----VSRPALTAERF  434 (570)
T ss_dssp             CGGGCSCSEEEECC-GGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEE----TTCHHHHHHHE
T ss_pred             hhhheeeeeeeeec-ccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhc----CCCchhhhccc
Confidence            68988765544321 112234456899999999999999 6799999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..+.......++||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       435 ~~~~~~~~~~~~w~~T---------GDlg~~d~dG~l~~~GR~~d~Ik~~G~~  478 (570)
T 4gr5_A          435 VADPFAGPGGERMYRT---------GDLARRRADGVLEYVGRADDQVKIRGFR  478 (570)
T ss_dssp             EECTTCCSSCCEEEEE---------EEEEEECTTSCEEEEEC-----------
T ss_pred             ccCCCCCCCCCEEEeC---------CCeEEECCCCeEEEEcccCCEEEECcEE
Confidence            6432211123479999         999999999999 999999999999875

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.93  E-value=3.5e-26  Score=181.11  Aligned_cols=106  Identities=28%  Similarity=0.410  Sum_probs=83.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++....     ...+.+++|+|+|+++++|+|+++++++++|+.|||+|+||+++.||    |++|+.|++.|
T Consensus       342 ~TE~~~~~~~~~~-----~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~~  412 (550)
T 3rix_A          342 LTETTSAILITPE-----GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY----VNNPEATNALI  412 (550)
T ss_dssp             CGGGSSEEEECCT-----TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEE----TTCHHHHHHHB
T ss_pred             cCccccceecCCC-----CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhh----cCChhhhhhhc
Confidence            6999876665431     23567899999999999999987899999999999999999999999    99999999998


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .+|||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       413 ~--------~~g~~~T---------GDl~~~~~dG~l~~~GR~dd~ik~~G~~  448 (550)
T 3rix_A          413 D--------KDGWLHS---------GDIAYWDEDEHFFIVDRLKSLIKYKGYQ  448 (550)
T ss_dssp             C--------TTSCEEE---------EEEEEECTTCCEEEC-------------
T ss_pred             C--------CCCCeec---------CcEEEEeCCceEEEEecchheeEECCEE
Confidence            5        5799999         999999999999 999999999999864

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.92  E-value=8.6e-26  Score=179.74  Aligned_cols=114  Identities=17%  Similarity=0.115  Sum_probs=93.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++.....  .....+..++|+|+|+++++|+| +++++++.|+.|||+|+||+++.||    |++|+.|+++|
T Consensus       325 ~TE~~~~~~~~~~~--~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY----~~~pe~t~~~f  397 (563)
T 1amu_A          325 PTETTICATTWVAT--KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGY----WKRPELTSQKF  397 (563)
T ss_dssp             CGGGSSCSEEEECC--SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEE----TTCHHHHHHHE
T ss_pred             cCHHhHhheeeecc--cccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhh----CCCchhhhhhc
Confidence            69998665554321  11123567899999999999999 6799999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..++.  ...++||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       398 ~~~~~--~~g~~w~~T---------GDlg~~d~dG~l~i~GR~~d~Ik~~G~~  439 (563)
T 1amu_A          398 VDNPF--VPGEKLYKT---------GDQARWLSDGNIEYLGRIDNQVKIRGHR  439 (563)
T ss_dssp             EECSS--STTSEEEEE---------EEEEEECTTSCEEEEEEGGGEEEETTEE
T ss_pred             ccCCC--CCCCEEEec---------CCEEEEcCCCeEEEeccccCEEEECCEE
Confidence            63211  113469999         999999999999 999999999999864

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.92  E-value=1.2e-25  Score=178.12  Aligned_cols=106  Identities=26%  Similarity=0.396  Sum_probs=94.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...     ....+.+++|+|+|+++++|+|+++++++++|+.|||+|+||+++.||    |++|+.|++.|
T Consensus       344 ~TE~~~~~~~~~-----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~f  414 (548)
T 2d1s_A          344 LTETTSAIIITP-----EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY----VNNPEATKELI  414 (548)
T ss_dssp             CGGGSSEEEECC-----TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEE----TTCHHHHHHHB
T ss_pred             cccccceeeecC-----cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhh----cCChHHhhhcc
Confidence            689987655532     113567899999999999999977899999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .+|||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       415 ~--------~~g~~~T---------GDl~~~~~dG~l~~~GR~~d~ik~~G~~  450 (548)
T 2d1s_A          415 D--------EEGWLHT---------GDIGYYDEEKHFFIVDRLKSLIKYKGYQ  450 (548)
T ss_dssp             C--------TTSCEEE---------EEEEEECTTCCEEEEEEGGGCBCBTTCC
T ss_pred             c--------CCcEEEc---------cCEEEEcCCCeEEEeccccceEEECCEE
Confidence            5        5799999         999999999999 999999999999875

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.92  E-value=2.1e-25  Score=186.67  Aligned_cols=111  Identities=51%  Similarity=0.843  Sum_probs=89.7

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++............+.+++|+|+++++++|+|+++++++++|++|||+|+||++++||    |++|+.|++.|
T Consensus       379 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY----~~~p~~t~~~f  454 (979)
T 3tsy_A          379 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGY----LNNPAATAETI  454 (979)
T ss_dssp             CGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEE----TTCHHHHHHHB
T ss_pred             hhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccc----cCChhhhhhhc
Confidence            69998765554222223334567899999999999999988899999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .++||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       455 ~--------~~g~~~T---------GDl~~~~~dG~l~~~GR~dd~ik~~G~~  490 (979)
T 3tsy_A          455 D--------KDGWLHT---------GDIGLIDDDDELFIVDRLKELIKYKGFQ  490 (979)
T ss_dssp             C--------TTSCEEE---------EEEEEECTTSCEEEEEESCC--------
T ss_pred             c--------CCCcEEc---------CCEEEEcCCceEEEecCCCCEEEECCEE
Confidence            6        5799999         999999999999 999999999999864

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.92  E-value=2.5e-25  Score=177.71  Aligned_cols=104  Identities=20%  Similarity=0.186  Sum_probs=91.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEc-----CccccccccccCCCchh
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG-----PQIMKVAELEFWSDGGH   75 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~g-----p~~~~GY~~~~~~~~~~   75 (133)
                      +||++..++....     ...+.+++|+|+|+++++|+| ++++++++|+.|||+|++     +.++.||    |++|+.
T Consensus       375 ~TE~~~~~~~~~~-----~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY----~~~p~~  444 (580)
T 3etc_A          375 QTETVVTIATFPW-----MEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHY----GKDPER  444 (580)
T ss_dssp             CTTSSCCEECCTT-----SCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEE----TTCHHH
T ss_pred             cccccceeecCCC-----CCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccc----cCCHhH
Confidence            6999766554321     235678999999999999999 579999999999999997     7899999    999999


Q ss_pred             hHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           76 DEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        76 t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |++.|         .+|||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       445 t~~~f---------~~gwy~T---------GDlg~~d~dG~l~~~GR~dd~Ik~~G~~  484 (580)
T 3etc_A          445 TEETW---------HDGYYHT---------GDMAWMDEDGYLWFVGRADDIIKTSGYK  484 (580)
T ss_dssp             HHHHE---------ETTEEEE---------EEEEEECTTSCEEEEEESSSCEEETTEE
T ss_pred             HHhhc---------CCCEEec---------CcEEEECCCCcEEEEecCCCEEEECCEE
Confidence            99999         4799999         999999999999 999999999999864

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.92  E-value=8.1e-26  Score=179.02  Aligned_cols=109  Identities=29%  Similarity=0.419  Sum_probs=84.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++.....    ......++|+|+++++++|+|++++++++.|+.|||+|+||+++.||    |++|+.|+++|
T Consensus       337 ~TE~~~~~~~~~~~----~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~f  408 (549)
T 3g7s_A          337 MTEACPMVTTNPPL----RLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGY----WKREKENQECW  408 (549)
T ss_dssp             CGGGSSEEEECCGG----GGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEE----TTCTTGGGTSE
T ss_pred             ccccchhhhcCCcc----ccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhh----CCChhhhhhhh
Confidence            68998766654321    12456799999999999999987899999999999999999999999    99999999988


Q ss_pred             hhhhcccCCCCc--ccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLG--WASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~g--w~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..+      .+|  ||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       409 ~~~------~~g~~~~~T---------GDl~~~~~dG~l~~~GR~dd~ik~~G~~  448 (549)
T 3g7s_A          409 WYD------EKGRKFFRT---------GDVGFIDEEGFLHFQDRVKEVIKYKGYT  448 (549)
T ss_dssp             EEC------TTCCEEEEE---------EEEEEECTTSCEEEEEEC----------
T ss_pred             hcc------CCCCceEcc---------CcEEEEcCCceEEEeccccceEEECCEE
Confidence            421      235  9999         999999999999 999999999999864

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.92  E-value=4.5e-26  Score=179.11  Aligned_cols=113  Identities=19%  Similarity=0.082  Sum_probs=88.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...............++|+|+|+++++|+| ++++++++|+.|||+|+||+++.||    |++|+.|+++|
T Consensus       299 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~f  373 (521)
T 3l8c_A          299 PTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGY----LNNPEKTAEAF  373 (521)
T ss_dssp             CGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCB----TTCHHHHHHHE
T ss_pred             ccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhh----cCCchHhhccC
Confidence            689887655432110000123456899999999999999 6799999999999999999999999    99999999998


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ...     ..++||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       374 ~~~-----~~~~~~~T---------GDlg~~d~dG~l~~~GR~~d~i~~~G~~  412 (521)
T 3l8c_A          374 FTF-----KGQPAYHT---------GDIGSLTEDNILLYGGRLDFQIKYAGYR  412 (521)
T ss_dssp             EEE-----TTEEEEEE---------EEEEEECSSSCEEEEEEGGGBCC-----
T ss_pred             cCC-----CCceeeeC---------CCEEEEeCCCeEEEeCcccceEeECCEE
Confidence            411     14589999         999999999999 999999999999865

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.91  E-value=2.5e-25  Score=179.12  Aligned_cols=116  Identities=16%  Similarity=0.096  Sum_probs=92.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCcc-CCCCCCeEEEEEcCccccccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGAS-LPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~-~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~   79 (133)
                      +||++..++..... .........++|+|+++++++|+| +++++ ++.|++|||+|+||++++||    |++|+.|+++
T Consensus       311 ~TE~~~~~~~~~~~-~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY----~~~p~~t~~~  384 (620)
T 4dg8_A          311 PTENTTFTCCHVVT-DDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGY----RNDAARTRAS  384 (620)
T ss_dssp             CGGGCSCSEEEECC-TGGGGSSSCCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEE----TTCHHHHHHH
T ss_pred             hhhhhhheEEEecc-ccccCCCCCCceecccCcEEEEEC-ccCCCCCCCCCceEEEEecccccccc----CCChhhhhhh
Confidence            69998766544321 112234567999999999999999 45666 89999999999999999999    9999999999


Q ss_pred             HhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           80 IKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        80 f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |..++. .+...+||+|         ||+|++++||+| |+||+|||||++|..
T Consensus       385 f~~~p~-~~~~~~~yrT---------GDl~~~~~dG~l~~~GR~dd~Ik~~G~r  428 (620)
T 4dg8_A          385 FVELPY-RGRLLRAYRT---------GDRARYDEQGRLRFIGRGDGQVKLNGYR  428 (620)
T ss_dssp             EEEEEE-TTEEEEEEEE---------EEEEEECTTSCEEEEECSSSEEEETTEE
T ss_pred             hccCCC-CCCCceEEeC---------CCEEEECCCCeEEEEccCCCEEEECCEE
Confidence            974321 1111168888         999999999999 999999999999864

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.91  E-value=8.2e-25  Score=171.96  Aligned_cols=105  Identities=23%  Similarity=0.324  Sum_probs=86.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCC---CCCeEEEEEcCccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPH---NQPGEICIRGPQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~---g~~Gel~i~gp~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++..++...     .......++|+|+++++++|+| +++++++.   |++|||+|+||+++.||    |++|+.|+
T Consensus       306 ~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~  375 (505)
T 3nyq_A          306 MTETLMNTSVRA-----DGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEY----LNRPDATA  375 (505)
T ss_dssp             ETTTEEEEECCT-----TSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEE----TTCHHHHH
T ss_pred             hhhcccccccCC-----CCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhh----CCChhHhh
Confidence            589876554432     2235668999999999999999 67888876   89999999999999999    99999999


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeec-CCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRK-KVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~-dd~Iki~~~~  132 (133)
                      ++|.        .++||+|         ||+|++|+||+| |+||+ |||||++|.+
T Consensus       376 ~~f~--------~~g~y~T---------GDl~~~~~dG~l~~~GR~~d~~ik~~G~~  415 (505)
T 3nyq_A          376 AAFT--------EDGFFRT---------GDMAVRDPDGYVRIVGRKATDLIKSGGYK  415 (505)
T ss_dssp             HTBC--------TTSCEEE---------EEEEEECTTSCEEEEEESSCCCEEETTEE
T ss_pred             hhhc--------CCCCCcc---------CCeEEECCCccEEEeCCccCceEEeCCEE
Confidence            9996        5799999         999999999999 99998 5999999864

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.91  E-value=4.7e-25  Score=174.41  Aligned_cols=89  Identities=19%  Similarity=0.248  Sum_probs=82.2

Q ss_pred             CCCccccCCCC-cEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCC
Q 032813           22 KSGSCGTVVRN-AELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAE  100 (133)
Q Consensus        22 ~~~~vG~p~p~-~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~  100 (133)
                      ...++|+|+++ .+++|+| ++++++++|+.|||+|+||++++||    |++|+.|+++|.        .+|||+|    
T Consensus       349 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~f~--------~~g~~~T----  411 (539)
T 1mdb_A          349 IVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGY----YKAEEHNAASFT--------EDGFYRT----  411 (539)
T ss_dssp             HHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSC----TTCHHHHHHHBC--------TTSCEEE----
T ss_pred             cCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhh----cCChhhhhhhcc--------CCCCeec----
Confidence            34689999976 4899999 6799999999999999999999999    999999999996        5799999    


Q ss_pred             CCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          101 PGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       101 ~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                           ||+|++|+||+| |+||+|||||++|.+
T Consensus       412 -----GDlg~~~~dG~l~~~GR~dd~ik~~G~~  439 (539)
T 1mdb_A          412 -----GDIVRLTRDGYIVVEGRAKDQINRGGEK  439 (539)
T ss_dssp             -----EEEEEECTTSCEEEEEEGGGCEECSSCE
T ss_pred             -----CceEEECCCCcEEEeccccceEEECCEE
Confidence                 999999999999 999999999999864

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.91  E-value=1.5e-24  Score=170.92  Aligned_cols=104  Identities=19%  Similarity=0.303  Sum_probs=88.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++....     .....+++|+|+++++++|+| ++++++++|++|||+|+||+++.||    |++|+.|++.|
T Consensus       334 ~TE~~~~~~~~~~-----~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY----~~~~~~t~~~f  403 (529)
T 2v7b_A          334 STEMLHIFLSNRA-----GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMY----WNNREKSRATF  403 (529)
T ss_dssp             CTTTSSEEEECCT-----TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCB----TTCHHHHHHHE
T ss_pred             hhhcCceeecccc-----CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCccccc----CCChHHHHHhh
Confidence            6898655444321     124568999999999999999 6799999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .         ++||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       404 ~---------~~~~~T---------GDl~~~~~~G~l~~~GR~dd~ik~~G~~  438 (529)
T 2v7b_A          404 L---------GEWIRS---------GDKYCRLPNGCYVYAGRSDDMLKVSGQY  438 (529)
T ss_dssp             E---------TTEEEE---------EEEEEECTTSCEEEEEEGGGCBC----C
T ss_pred             h---------cCCccc---------CceEEECCCccEEEeCccCCeEEECCEE
Confidence            4         689999         999999999999 999999999999865

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.91  E-value=4.4e-25  Score=174.72  Aligned_cols=106  Identities=19%  Similarity=0.172  Sum_probs=82.4

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCC-CCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEI   79 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~-p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~   79 (133)
                      +||++..++...    ........++|+|+ ++++++|+| ++++++++|++|||+|+||+++.||    |++|+.|+++
T Consensus       341 ~TE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~  411 (544)
T 3o83_A          341 MAEGLVNYTRLD----DSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGY----YQSPEHNSQV  411 (544)
T ss_dssp             CTTSCEEECCTT----SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCC----TTCHHHHHHH
T ss_pred             cccccceeecCC----CchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhh----cCChhhhhhh
Confidence            689875433221    11122346899996 899999999 7899999999999999999999999    9999999999


Q ss_pred             HhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           80 IKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        80 f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |.        .++||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       412 f~--------~~g~~~T---------GDlg~~~~dG~l~~~GR~dd~ik~~G~~  448 (544)
T 3o83_A          412 FD--------EDNYYYS---------GDLVQRTPDGNLRVVGRIKDQINRGGEK  448 (544)
T ss_dssp             BC--------TTCCEEE---------EEEEEECTTSCEEEEEEEC---------
T ss_pred             CC--------CCCCeEc---------CCEEEEcCCCCEEEEeecCCEEEeCCEE
Confidence            96        5799999         999999999999 999999999999865

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.91  E-value=1.1e-24  Score=173.63  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=91.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEE-----cCccccccccccCCCchh
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIR-----GPQIMKVAELEFWSDGGH   75 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~-----gp~~~~GY~~~~~~~~~~   75 (133)
                      +||++..++...     ....+.+++|+|+|+++++|+| +++++++.|+.|||+|+     ||+++.||    |++|+.
T Consensus       356 ~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY----~~~~~~  425 (570)
T 3c5e_A          356 QTETGLTCMVSK-----TMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGY----VDNPDK  425 (570)
T ss_dssp             ETTTEEEEECCT-----TSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEE----TTCHHH
T ss_pred             hhhcccceecCc-----ccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccc----cCChhH
Confidence            589986554432     1134568999999999999999 67999999999999999     99999999    999999


Q ss_pred             hHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           76 DEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        76 t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |++.|.         ++||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       426 t~~~f~---------~~~~~T---------GDlg~~d~dG~l~~~GR~dd~Ik~~G~~  465 (570)
T 3c5e_A          426 TAANIR---------GDFWLL---------GDRGIKDEDGYFQFMGRADDIINSSGYR  465 (570)
T ss_dssp             HHHTEE---------TTEEEE---------EEEEEECTTSCEEEEEEGGGCEEETTEE
T ss_pred             hhhhhc---------CCcccc---------ceeEEEcCCceEEEEecCCCEEEECCEE
Confidence            999983         689999         999999999999 999999999999864

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.90  E-value=5.5e-25  Score=174.44  Aligned_cols=108  Identities=13%  Similarity=-0.002  Sum_probs=81.7

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++....    .......++|+|+++++++|+|+++++++++|+.|||+|+||+++.||    |++|+.++..+
T Consensus       328 ~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY----~~~p~~t~~~~  399 (562)
T 3ite_A          328 PTEVTIGCSAGRI----LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGY----LNRPDAKGFCD  399 (562)
T ss_dssp             CGGGCSCSEEEEC----CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEE----SSCTTCCSEEE
T ss_pred             cchheeeeeeeee----cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhh----CCCcccccccc
Confidence            6998876655432    113456789999999999999977889999999999999999999999    99999886443


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .       ..++||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       400 ~-------~g~~w~~T---------GDlg~~d~dG~l~~~GR~dd~Ik~~G~~  436 (562)
T 3ite_A          400 I-------NGRKMYRT---------GDIVRMDADSSILFLGRKDEQVKVRGQR  436 (562)
T ss_dssp             E-------TTEEEEEE---------EEEEEECTTSCEEEEEEC----------
T ss_pred             C-------CCCEEEec---------CCEEEEcCCCeEEEEccccCEEeECcEE
Confidence            2       12349999         999999999999 999999999999865

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.90  E-value=3.4e-24  Score=173.11  Aligned_cols=109  Identities=18%  Similarity=0.137  Sum_probs=92.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEc--CccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG--PQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~g--p~~~~GY~~~~~~~~~~t~~   78 (133)
                      +||++..++....   .....+.+++|+|+++++++|+| +++++++.|+.|||+|+|  |++++||    |++|+.+.+
T Consensus       415 ~TE~~~~~~~~~~---~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY----~~~~e~~~~  486 (652)
T 1pg4_A          415 QTETGGFMITPLP---GAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTL----FGDHERFEQ  486 (652)
T ss_dssp             CGGGSSCSBCCCT---TTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEE----TTCHHHHHH
T ss_pred             CcccccceecCCC---CCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhh----cCCHHHHHh
Confidence            6898866554321   12235678999999999999999 679999999999999999  7899999    999999988


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .|...      .+|||+|         ||+|++|+||+| |+||+|||||++|..
T Consensus       487 ~~~~~------~~g~y~T---------GDlg~~d~dG~l~i~GR~dd~Ik~~G~r  526 (652)
T 1pg4_A          487 TYFST------FKNMYFS---------GDGARRDEDGYYWITGRVDDVLNVSGHR  526 (652)
T ss_dssp             HHHSS------STTSEEE---------EEEEEECTTSCEEEEEESSSEEEETTEE
T ss_pred             hhhhc------CCCEEEC---------CcEEEEcCCCcEEEEecCCCEEEECCEE
Confidence            87421      3689999         999999999999 999999999999864

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.90  E-value=1.4e-24  Score=170.40  Aligned_cols=103  Identities=21%  Similarity=0.347  Sum_probs=81.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++.....      ....++|+|+++++++|+| ++++++++|++|||+|+||+++.||    |++|+.|+++|
T Consensus       304 ~TE~~~~~~~~~~~------~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY----~~~~~~t~~~f  372 (509)
T 3ivr_A          304 QSETSGLSTFAPYR------DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGY----WNNAAATQHAF  372 (509)
T ss_dssp             EGGGTEEEEEEEGG------GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEE----TTCHHHHHHHT
T ss_pred             ccccccccccCccc------cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccc----cCCHHHhHHHh
Confidence            58998766654321      2234599999999999999 5799999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeec--CCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRK--KVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~--dd~Iki~~~~  132 (133)
                      .         +|||+|         ||+|++|+||+| |+||+  ||+||++|.+
T Consensus       373 ~---------~g~~~T---------GDl~~~~~dG~l~~~GR~d~~d~ik~~G~~  409 (509)
T 3ivr_A          373 R---------NGWHHT---------GDMGRFDADGYLFYAGRAPEKELIKTGGEN  409 (509)
T ss_dssp             G---------GGSEEE---------EEEEEECTTSCEEEEEEC------------
T ss_pred             h---------cCCccc---------ccEEEECCCceEEEeCCCCcceeEEECCEE
Confidence            4         699999         999999999999 99999  9999999864

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.90  E-value=1.3e-24  Score=170.74  Aligned_cols=112  Identities=18%  Similarity=0.144  Sum_probs=90.2

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      |||++..++...............++|+|+|+++++|+| ++++++++|+.|||+|+||+++.||    |++|+.|++.|
T Consensus       295 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~f  369 (511)
T 3e7w_A          295 PTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGY----LGEPELTEKAF  369 (511)
T ss_dssp             CGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCB----TTCHHHHHHHE
T ss_pred             cchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhh----CCCcccchhhh
Confidence            689887655432111111224557899999999999999 6799999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ...     ....||+|         ||+|++ +||+| |+||+|||||++|.+
T Consensus       370 ~~~-----~g~~~~~T---------GDlg~~-~dG~l~~~GR~~d~ik~~G~~  407 (511)
T 3e7w_A          370 FSH-----EGQWAYRT---------GDAGFI-QDGQIFCQGRLDFQIKLHGYR  407 (511)
T ss_dssp             EES-----SSSEEEEE---------EEEEEE-ETTEEEEEEESSSEEEETTEE
T ss_pred             cCC-----CCCEEEeC---------CCeEEc-cCCeEEEEccccCEEEECCEE
Confidence            521     01237999         999999 58999 999999999999864

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.90  E-value=3.1e-24  Score=183.98  Aligned_cols=115  Identities=20%  Similarity=0.133  Sum_probs=95.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +|||+..++..... .........++|+|+++++++|+| ++++++|.|++|||||+|+++++||    |++|+.|+++|
T Consensus       755 ~TE~~~~~~~~~~~-~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY----~~~p~~T~~~f  828 (1304)
T 2vsq_A          755 PTEGTVFATAHVVH-DLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGY----VNRADLTKEKF  828 (1304)
T ss_dssp             CGGGSSCSEEEECC-CCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCB----TTCHHHHHHHE
T ss_pred             hhHHhHHheeeecc-CccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccc----cCCcccchhhh
Confidence            69998766654321 111233457899999999999999 6799999999999999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ..++.  ...++||+|         ||+|++++||+| |+||+|||||++|..
T Consensus       829 ~~~p~--~~g~~~yrT---------GDl~~~~~dG~l~~~GR~d~qvki~G~r  870 (1304)
T 2vsq_A          829 IENPF--KPGETLYRT---------GDLARWLPDGTIEYAGRIDDQVKIRGHR  870 (1304)
T ss_dssp             EECTT--STTCEEEEE---------EEEEEECTTSCEEEEEEGGGEEEETTEE
T ss_pred             ccCCC--CCCCeeEec---------CCeEEEcCCCeEEEEcCCCCEEEECCEe
Confidence            74432  123468888         999999999999 999999999999863

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.90  E-value=1.8e-24  Score=171.08  Aligned_cols=110  Identities=23%  Similarity=0.343  Sum_probs=90.0

Q ss_pred             CCCCCcccccccCCCCC-CC-----CCCCCccccCCCCcEEEEEcCCCCccCCC--CCCeEEEEEcCccccccccccCCC
Q 032813            1 MTEAGPVLSMCLGFAKQ-PF-----PTKSGSCGTVVRNAELKVIDPEIGASLPH--NQPGEICIRGPQIMKVAELEFWSD   72 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~-~~-----~~~~~~vG~p~p~~~v~i~d~~~g~~~~~--g~~Gel~i~gp~~~~GY~~~~~~~   72 (133)
                      +||++.+++........ ..     .....++|+|+|+++++|+| +++++++.  ++.|||+|+||+++.||    |++
T Consensus       326 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY----~~~  400 (541)
T 1v25_A          326 LTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGY----YGN  400 (541)
T ss_dssp             CGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSC----BTC
T ss_pred             ccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccc----cCC
Confidence            69998766554211000 00     01347899999999999999 57899985  36899999999999999    999


Q ss_pred             chhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           73 GGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        73 ~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      |++|+++|.        .+|||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       401 p~~t~~~f~--------~~g~~~T---------GDlg~~d~dG~l~~~GR~~d~ik~~G~~  444 (541)
T 1v25_A          401 EEATRSALT--------PDGFFRT---------GDIAVWDEEGYVEIKDRLKDLIKSGGEW  444 (541)
T ss_dssp             HHHHHTTBC--------TTSCEEE---------EEEEEECTTCCEEEEEESSCEEEETTEE
T ss_pred             hhhhhhhcc--------CCCCeEc---------CCEEEEcCCceEEEeecccceeeeCCEE
Confidence            999999985        4799999         999999999999 999999999999864

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.90  E-value=1.3e-24  Score=171.19  Aligned_cols=105  Identities=22%  Similarity=0.291  Sum_probs=91.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++....   .......+++|+|+++++++|+| +++++++.| .|||+|+||+++.||    |++|+.|+++|
T Consensus       317 ~TE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY----~~~p~~t~~~f  387 (517)
T 3r44_A          317 LTESCGGGTLLLS---EDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEY----WNRPEATRDAF  387 (517)
T ss_dssp             CGGGTTCEEEECG---GGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEE----TTCHHHHHHTE
T ss_pred             ccccccceeecCC---ccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhh----CCChhhhHhhh
Confidence            6898876555432   12245678999999999999999 679999999 899999999999999    99999999999


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .++||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       388 ---------~~g~~~T---------GDl~~~~~dG~l~~~GR~dd~ik~~G~~  422 (517)
T 3r44_A          388 ---------DNGWFRT---------GDIGEIDDEGYLYIKDRLKDMIISGGEN  422 (517)
T ss_dssp             ---------ETTEEEE---------EEEEEECTTSCEEEEECGGGCEEETTEE
T ss_pred             ---------cCCCEec---------ceeEEEcCCeeEEEecCCcCEEEECCEE
Confidence                     4799999         999999999999 999999999999864

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.90  E-value=1.5e-24  Score=170.18  Aligned_cols=112  Identities=18%  Similarity=0.110  Sum_probs=91.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++...............++|+|+++++++|+| ++++++++|+.|||+|+||+++.||    |++|+.|+++|
T Consensus       296 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY----~~~~~~t~~~f  370 (512)
T 3fce_A          296 PTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGY----LGSPELTEKAF  370 (512)
T ss_dssp             CGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCB----TTCHHHHHHHE
T ss_pred             cChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhh----cCCchhhhhcc
Confidence            689887665432110000123567899999999999999 7899999999999999999999999    99999999998


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ...     ..++||+|         ||+|++ +||+| |+||+|||||++|.+
T Consensus       371 ~~~-----~~~~~~~T---------GDlg~~-~dG~l~i~GR~~d~ik~~G~~  408 (512)
T 3fce_A          371 TMI-----DGERAYKT---------GDAGYV-ENGLLFYNGRLDFQIKLHGYR  408 (512)
T ss_dssp             EEE-----TTEEEEEE---------EEEEEE-ETTEEEEEEEGGGCEEETTEE
T ss_pred             ccC-----CCCEEEeC---------CceEEe-cCCEEEEecccCCEEEECCEE
Confidence            411     13579999         999999 79999 999999999998864

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.90  E-value=2e-24  Score=173.24  Aligned_cols=88  Identities=22%  Similarity=0.290  Sum_probs=82.2

Q ss_pred             CCccccCC-CCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCC
Q 032813           23 SGSCGTVV-RNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEP  101 (133)
Q Consensus        23 ~~~vG~p~-p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~  101 (133)
                      ..++|+|+ ++.+++|+| +++++++.|++|||+|+||++++||    |++|+.|+++|.        .++||+|     
T Consensus       354 ~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY----~~~p~~t~~~f~--------~~~~yrT-----  415 (617)
T 3rg2_A          354 IHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGY----YKSPQHNASAFD--------ANGFYCS-----  415 (617)
T ss_dssp             HHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCC----TTCHHHHHHHBC--------TTSCEEE-----
T ss_pred             ccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchh----cCChhhhhhccC--------CCCceec-----
Confidence            35789997 788999999 6899999999999999999999999    999999999996        5799999     


Q ss_pred             CCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          102 GRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       102 ~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                          ||+|++++||+| |+||+|||||++|..
T Consensus       416 ----GDl~~~~~dG~l~~~GR~dd~iki~G~r  443 (617)
T 3rg2_A          416 ----GDLISIDPEGYITVQGREKDQINRGGEK  443 (617)
T ss_dssp             ----EEEEEECTTSCEEEEEECSSEEEETTEE
T ss_pred             ----CceEEEcCCceEEEEeecCCEEEECCEE
Confidence                999999999999 999999999999864

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.89  E-value=3.3e-24  Score=170.44  Aligned_cols=95  Identities=19%  Similarity=0.164  Sum_probs=79.3

Q ss_pred             CCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCC
Q 032813           22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEP  101 (133)
Q Consensus        22 ~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~  101 (133)
                      ...++|+|+++  ++|+|+++++++++|++|||+|+||+++.||    |++|+.|+++|...........+||+|     
T Consensus       372 ~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY----~~~p~~t~~~f~~~~~~~~~g~~~~~T-----  440 (590)
T 3kxw_A          372 KLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGY----WNQPEETRHAFAGKIKDDERSAIYLRT-----  440 (590)
T ss_dssp             EEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCB----TTCHHHHHHHHCBCCTTC---CCBEEE-----
T ss_pred             eEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccc----cCChhHHHHHHhccccCCCCCCcEEec-----
Confidence            34689999998  8899976699999999999999999999999    999999999996321111011239999     


Q ss_pred             CCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          102 GRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       102 ~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                          ||+|++| +|+| |+||+|||||++|.+
T Consensus       441 ----GDlg~~d-dG~l~~~GR~dd~Ik~~G~~  467 (590)
T 3kxw_A          441 ----GDLGFLH-ENELYVTGRIKDLIIIYGKN  467 (590)
T ss_dssp             ----EEEEEEE-TTEEEEEEESSCHHHHHHHT
T ss_pred             ----CcEEEEE-CCEEEEEcCccceEEECCEe
Confidence                9999999 9999 999999999998764

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.89  E-value=1.9e-23  Score=169.24  Aligned_cols=111  Identities=22%  Similarity=0.272  Sum_probs=92.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCC-CCCeEEEEEc--CccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPH-NQPGEICIRG--PQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~-g~~Gel~i~g--p~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++..++....  ......+++++|+|+++++++|+|+++|++++. |+.|||+|+|  |+++.||    |++|+++.
T Consensus       421 ~TE~~~~~~~~~~--~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy----~~~~~~~~  494 (663)
T 1ry2_A          421 QTESGSHLVTPLA--GGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTI----WKNHDRYL  494 (663)
T ss_dssp             CTTTCSCSEECCT--TTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEE----TTCHHHHH
T ss_pred             CccccCeeeccCC--CCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhccc----ccChHHHH
Confidence            6999866554321  012245678999999999999999548999988 9999999999  5899999    99999998


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.|...      .+|||+|         ||+|++|+||+| |+||+|||||++|..
T Consensus       495 ~~~~~~------~~g~y~T---------GDlg~~d~dG~l~i~GR~dd~Ik~~G~r  535 (663)
T 1ry2_A          495 DTYLNP------YPGYYFT---------GDGAAKDKDGYIWILGRVDDVVNVSGHR  535 (663)
T ss_dssp             HHHTSS------STTSEEE---------EEEEEECTTCCEEECSCTTSCBCSSSCC
T ss_pred             HhhhcC------CCCEEEc---------CCEEEEcCCCCEEEEeecCCEEEECCEE
Confidence            888411      3689999         999999999999 999999999999864

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.88  E-value=3.3e-23  Score=162.47  Aligned_cols=89  Identities=16%  Similarity=0.146  Sum_probs=82.1

Q ss_pred             CCCCccccCCCCcEEEEEcCCCC---ccCCCCCCeEEEEE-cCccccccccccCCCchhhHHHHhhhhcccCCCCccccc
Q 032813           21 TKSGSCGTVVRNAELKVIDPEIG---ASLPHNQPGEICIR-GPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASK   96 (133)
Q Consensus        21 ~~~~~vG~p~p~~~v~i~d~~~g---~~~~~g~~Gel~i~-gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t   96 (133)
                      .+.+++|+|+++++++|+|+ ++   +++++|+.|||+|+ ||+++.||    |++|+.|+++|         .+|||+|
T Consensus       318 ~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~GY----~~~~~~t~~~f---------~~g~~~T  383 (504)
T 1t5h_X          318 PKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGY----LNQPQATAEKL---------QDGWYRT  383 (504)
T ss_dssp             CSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCB----TTCHHHHHHHE---------ETTEEEE
T ss_pred             CCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeecee----cCCchhhhhhh---------cCCcccc
Confidence            45678999999999999994 56   89999999999999 99999999    99999999999         3689999


Q ss_pred             ccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           97 AQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        97 ~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               ||+|++|+||+| |+||+|||||++|.+
T Consensus       384 ---------GDlg~~~~dG~l~~~GR~dd~ik~~G~~  411 (504)
T 1t5h_X          384 ---------SDVAVWTPEGTVRILGRVDDMIISGGEN  411 (504)
T ss_dssp             ---------EEEEEECTTSCEEEEEEGGGCEEETTEE
T ss_pred             ---------CcEEEECCCceEEEeCcccCEEEECCEE
Confidence                     999999999999 999999999999864

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.85  E-value=4.2e-22  Score=154.58  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=71.4

Q ss_pred             CCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhc---ccCCCCccccccc
Q 032813           22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRL---TMGSSLGWASKAQ   98 (133)
Q Consensus        22 ~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~---~~~~~~gw~~t~~   98 (133)
                      ...++|+|++ ++++|+|++++++++.|++|||+|+||+++.||    |++|++|+++|.....   .....++||+|  
T Consensus       392 ~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY----~~~pe~t~~~f~~~~~~~~~~~~~~~w~~T--  464 (480)
T 3t5a_A          392 SLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGY----WQKPDESERTFGGKIVTPSPGTPEGPWLRT--  464 (480)
T ss_dssp             EEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCB----TTBHHHHHHHHCBCCSSCCTTCCCCCBEEE--
T ss_pred             eeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCcccccc----ccCcchhHHHHhhhhccccCCCCCCCeeec--
Confidence            3468999999 999999976689999999999999999999999    9999999999952111   01114579999  


Q ss_pred             CCCCCCCCcEEEEcCCCeE-EEee
Q 032813           99 AEPGRWAFDLALRTRAGYE-LKKR  121 (133)
Q Consensus        99 ~~~~~~tGD~g~~d~dG~l-~~GR  121 (133)
                             ||+|++| ||+| |+||
T Consensus       465 -------GDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          465 -------GDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             -------EEEEEEE-TTEEEECC-
T ss_pred             -------cceeeEE-CCEEEEeCC
Confidence                   9999997 9999 9998

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.85  E-value=1.9e-22  Score=157.83  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=82.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++..++....   .....+..++|+|+++++++|+|++      +++.|||+|+|++++.||    |++|+.+++ |
T Consensus       307 ~TE~~~~~~~~~~---~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY----~~~~~~t~~-~  372 (501)
T 3ipl_A          307 MTETCSQFLTATP---EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGY----LYPTDLTGT-F  372 (501)
T ss_dssp             EGGGTEEEEEECH---HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCC----SBSTTCCCS-E
T ss_pred             ccccccceeecCc---cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhh----CcChhhcch-h
Confidence            5898765443321   1112356789999999999999953      567899999999999999    999998876 5


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .+|||+|         ||+|++|+||+| |+||+|||||++|.+
T Consensus       373 ---------~~g~~~T---------GDl~~~~~~G~l~~~GR~dd~ik~~G~~  407 (501)
T 3ipl_A          373 ---------ENGYFNT---------GDIAEIDHEGYVMIYDRRKDLIISGGEN  407 (501)
T ss_dssp             ---------ETTEEEE---------EEEEEECTTSCEEEEEECCCCEECSSCE
T ss_pred             ---------cCCceec---------CCEEEEcCCCeEEEEccccceEEECCEE
Confidence                     4699999         999999999999 999999999999864

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.58  E-value=1.4e-15  Score=117.10  Aligned_cols=74  Identities=19%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             ccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCC
Q 032813           25 SCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRW  104 (133)
Q Consensus        25 ~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~  104 (133)
                      .++.|.+++.++|+|+++++++++|+.|||+|+|+.-                +.|         ..+||+|        
T Consensus       257 g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~----------------~~~---------~~~~y~T--------  303 (436)
T 3qov_A          257 GMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDR----------------EMM---------PLIRYRT--------  303 (436)
T ss_dssp             SEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSC----------------CSS---------CCCSEEE--------
T ss_pred             eeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCc----------------CCc---------eEEEEEc--------
Confidence            3677888999999998889999999999999998521                111         3589999        


Q ss_pred             CCcEEEEcCCC------e---E-EEeecCCeEEeCCCC
Q 032813          105 AFDLALRTRAG------Y---E-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       105 tGD~g~~d~dG------~---l-~~GR~dd~Iki~~~~  132 (133)
                       ||+|+++++|      +   + |+||+||+||++|.+
T Consensus       304 -GDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~  340 (436)
T 3qov_A          304 -RDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVN  340 (436)
T ss_dssp             -EEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEE
T ss_pred             -CCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEE
Confidence             9999999998      5   7 999999999998863

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.51  E-value=5.2e-15  Score=113.97  Aligned_cols=73  Identities=19%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             cccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCC
Q 032813           26 CGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWA  105 (133)
Q Consensus        26 vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~t  105 (133)
                      ++.|.+++.++|+|++++++++.|+.|||+|+|..          +      ++|         ..+||+|         
T Consensus       263 ~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t----------~------~~~---------~~~~y~T---------  308 (437)
T 2y27_A          263 PTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT----------K------EAL---------PIIRYRT---------  308 (437)
T ss_dssp             CEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS----------C------SSS---------CCCSEEE---------
T ss_pred             eeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC----------c------CCc---------hhheeec---------
Confidence            56677899999999777999999999999999732          1      112         3589999         


Q ss_pred             CcEEEEcC-CCe-----E-EEeecCCeEEeCCCC
Q 032813          106 FDLALRTR-AGY-----E-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       106 GD~g~~d~-dG~-----l-~~GR~dd~Iki~~~~  132 (133)
                      ||+|++++ +|+     + |+||+||+||++|.+
T Consensus       309 GDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~  342 (437)
T 2y27_A          309 RDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVN  342 (437)
T ss_dssp             EEEECEECCSSSSSCEECCCCEEGGGCEEETTEE
T ss_pred             CCEEEEeCCCCCCccccCccccccCCeEEECCeE
Confidence            99999999 698     4 899999999998853

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.49  E-value=1.1e-14  Score=112.39  Aligned_cols=73  Identities=16%  Similarity=0.137  Sum_probs=60.4

Q ss_pred             cccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCC
Q 032813           26 CGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWA  105 (133)
Q Consensus        26 vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~t  105 (133)
                      ++.|.+++.++|+|+++++++++|+.|||+|+|..          +      +.|         ..+||+|         
T Consensus       265 ~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t----------~------~~~---------p~~~y~T---------  310 (443)
T 2y4o_A          265 PVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT----------K------EAM---------PVIRYRT---------  310 (443)
T ss_dssp             EEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS----------C------SSS---------CCSSEEE---------
T ss_pred             eEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC----------c------ccC---------hhheeec---------
Confidence            45567899999999778999999999999999732          1      112         3589999         


Q ss_pred             CcEEEEcCC-Ce------EEEeecCCeEEeCCCC
Q 032813          106 FDLALRTRA-GY------ELKKRKKVWVRFDPLF  132 (133)
Q Consensus       106 GD~g~~d~d-G~------l~~GR~dd~Iki~~~~  132 (133)
                      ||+|+++++ |+      .|+||+||+||++|.+
T Consensus       311 GDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~  344 (443)
T 2y4o_A          311 RDLTALLPPTARAMRRLAKITGRSDDMLIVRGVN  344 (443)
T ss_dssp             EEEECEECCSSSSSCEECCCCEESSCCEEETTEE
T ss_pred             CCEEEEcCCCCCCccccCccccccCCeEEECCEE
Confidence            999999999 97      3889999999999854

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.46  E-value=7.7e-14  Score=105.49  Aligned_cols=79  Identities=13%  Similarity=0.023  Sum_probs=61.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      |||++..++.....     ....+++|.+.|++++.+.+           .|||+++|+.+                   
T Consensus       181 ~TEt~~~~~~~~~~-----~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~-------------------  225 (358)
T 4gs5_A          181 MTETVSHVALKALN-----GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT-------------------  225 (358)
T ss_dssp             CGGGSSEEEEEECS-----STTCCSCEEECTTCEEEECT-----------TSEEEEESGGG-------------------
T ss_pred             cccccceeeccccc-----ccccceeeccCCCeEEEecC-----------cCceEEecccc-------------------
Confidence            68988766665421     24457889999999888754           38999987631                   


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeEEEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYELKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l~~GR~dd~Iki~~~~  132 (133)
                               .++||+|         ||+|++|++|++|+||+|||||++|.+
T Consensus       226 ---------~~g~~~T---------GDlg~~d~~g~~~~GR~dd~Ik~~G~~  259 (358)
T 4gs5_A          226 ---------NGQTVQT---------NDLVEIHGNAFQWIGRADNVINSGGVK  259 (358)
T ss_dssp             ---------TTCCEEE---------EEEEEECSSEEEEEEEGGGEEEETTEE
T ss_pred             ---------cCcceec---------CCccccccCceEEcccccCeEEECCEE
Confidence                     3589999         999999999955889999999999864

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=98.80  E-value=6.7e-10  Score=83.62  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=32.1

Q ss_pred             ccccC------CCCcEEEEEcCCCCccCCCCCCeEEEEEcC
Q 032813           25 SCGTV------VRNAELKVIDPEIGASLPHNQPGEICIRGP   59 (133)
Q Consensus        25 ~vG~p------~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp   59 (133)
                      ++|+|      +|+++++|+|+++++++++|+.|||+|++.
T Consensus       281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l  321 (369)
T 3hgu_A          281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHL  321 (369)
T ss_dssp             TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEE
T ss_pred             cCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEc
Confidence            58999      999999999976899999999999999873

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=94.16  E-value=0.047  Score=43.83  Aligned_cols=49  Identities=16%  Similarity=0.045  Sum_probs=37.6

Q ss_pred             cCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcC----CCeE-EE
Q 032813           45 SLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTR----AGYE-LK  119 (133)
Q Consensus        45 ~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~----dG~l-~~  119 (133)
                      .|..|+.+||+|...+   |.    |.                      |++         ||+.++..    ...+ |+
T Consensus       380 eVe~G~~YelViTt~~---GL----~R----------------------Yr~---------GD~v~v~~f~~~~p~i~f~  421 (581)
T 4eql_A          380 DVKLGCTYEPVVTNFA---GL----YR----------------------MRV---------GDIVLVTGFYNNAPQFKFV  421 (581)
T ss_dssp             GCCTTCEEEEEEECSS---SC----CS----------------------EEC---------CEEEEEEEEETTEEEEEEE
T ss_pred             HcCCCceEEEEEeecc---ce----ee----------------------EEc---------CCEEEEcccCCCCcEEEEE
Confidence            4567889999998663   33    21                      567         99999875    3468 99


Q ss_pred             eecCCeEEeCCC
Q 032813          120 KRKKVWVRFDPL  131 (133)
Q Consensus       120 GR~dd~Iki~~~  131 (133)
                      ||.+++|++.|.
T Consensus       422 gR~~~~l~~~Ge  433 (581)
T 4eql_A          422 RRENVVLSIDSD  433 (581)
T ss_dssp             EETTEEECSSSC
T ss_pred             EecCCEEEeeee
Confidence            999999999874

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=93.87  E-value=0.049  Score=43.93  Aligned_cols=50  Identities=20%  Similarity=0.079  Sum_probs=38.7

Q ss_pred             ccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcC----CCeE-E
Q 032813           44 ASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTR----AGYE-L  118 (133)
Q Consensus        44 ~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~----dG~l-~  118 (133)
                      ..|..|+.+||+|...   .|.    |.                      |++         ||+.+++.    ...+ |
T Consensus       391 ~eVe~G~~YelViTt~---~GL----~R----------------------Yr~---------GD~v~v~~f~~~~p~i~~  432 (609)
T 4b2g_A          391 AHVEVGKEYELVITTY---AGL----YR----------------------YRV---------GDILRVTGFHNSAPQFHF  432 (609)
T ss_dssp             GGCCTTCEEEEEEECT---TSC----CS----------------------EEE---------EEEEEEEEEETTEEEEEE
T ss_pred             hHcCCCCeEEEehhhh---hhh----hh----------------------eec---------CCEEEEeecCCCCcEEEE
Confidence            3567899999999755   355    31                      677         99999873    4568 9


Q ss_pred             EeecCCeEEeCCC
Q 032813          119 KKRKKVWVRFDPL  131 (133)
Q Consensus       119 ~GR~dd~Iki~~~  131 (133)
                      +||.+++|++.|.
T Consensus       433 ~gR~~~~l~~~Ge  445 (609)
T 4b2g_A          433 VRRKNVLLSIDSD  445 (609)
T ss_dssp             EEETTCCBCSSSC
T ss_pred             EEecCCeEEcccc
Confidence            9999999999874

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=92.26  E-value=0.1  Score=41.86  Aligned_cols=50  Identities=8%  Similarity=-0.059  Sum_probs=38.1

Q ss_pred             ccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCC----CeE-E
Q 032813           44 ASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRA----GYE-L  118 (133)
Q Consensus        44 ~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~d----G~l-~  118 (133)
                      ..|..|+.+||+|...+   |.    |.                      |++         ||+.++..-    -.+ |
T Consensus       386 ~eve~G~~YelviTt~~---GL----~R----------------------Yr~---------GD~v~v~g~~~~~p~~~~  427 (581)
T 4epl_A          386 TQVKIGEEYEVVITNYA---GL----YR----------------------YRL---------GDVVKVIGFYNNTPQLKF  427 (581)
T ss_dssp             GGCCTTCEEEEEEESTT---SC----SS----------------------EEE---------EEEEEEEEEETTEEEEEE
T ss_pred             HHcCCCCeEEEEEeecc---ce----ee----------------------EEc---------CCEEEEecccCCCcEEEE
Confidence            35678999999998763   33    21                      577         999988742    358 9


Q ss_pred             EeecCCeEEeCCC
Q 032813          119 KKRKKVWVRFDPL  131 (133)
Q Consensus       119 ~GR~dd~Iki~~~  131 (133)
                      +||.+++|++.|.
T Consensus       428 ~gR~~~~l~~~Ge  440 (581)
T 4epl_A          428 ICRRNLILSINID  440 (581)
T ss_dssp             EEETTCCBCSSSC
T ss_pred             EeecCCeEEeeee
Confidence            9999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-10
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-08
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-06
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-04
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	4e-04
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-04

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 53.8 bits (128), Expect = 5e-10
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
           +TE    + +           K G+ G VV   E KV+D + G +L  NQ GE+C+RGP 
Sbjct: 339 LTETTSAILIT-----PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 393

Query: 61  IMK 63
           IM 
Sbjct: 394 IMS 396

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 4/59 (6%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGP 59
            TE G  +   L         K+GS        +  ++D E G        G + I   
Sbjct: 411 QTETGGFMITPLP---GAIELKAGSATRPFFGVQPALVDNE-GHPQEGATEGNLVITDS 465

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHN--QPGEICIRG 58
           +     V S     +++   T     G  +    L+V D E G  +P +    GE+ ++G
Sbjct: 325 VVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQLKG 383

Query: 59  PQIMK 63
           P I  
Sbjct: 384 PWITG 388

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
            TE     +  +  A +     S   G  ++N ++ ++D          + GE+CI G  
Sbjct: 309 PTETTICATTWV--ATKETIGHSVPIGAPIQNTQIYIVDEN-LQLKSVGEAGELCIGGEG 365

Query: 61  IMK 63
           + +
Sbjct: 366 LAR 368

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 5/44 (11%), Positives = 15/44 (34%)

Query: 20  PTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
                + G  +   +   +  +    +   + G +  RGP  ++
Sbjct: 347 EIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIR 390

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 1   MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASL-PHNQPGEICIRGP 59
            TE+G  L   L  A    P K GS        +  V+DP  G  L   +  G + ++  
Sbjct: 398 QTESGSHLVTPL--AGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAA 455

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.92
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.88
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.88
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.86
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.84
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.76
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.55

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.92  E-value=1.1e-25  Score=173.86  Aligned_cols=106  Identities=28%  Similarity=0.410  Sum_probs=87.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      |||++..++....     ...+.+++|+|+|+++++|+|++++++++.|+.|||+|+|++++.||    |++++.+...+
T Consensus       339 ~TE~~~~~~~~~~-----~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY----~~~~~~~~~~~  409 (541)
T d1lcia_         339 LTETTSAILITPE-----GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY----VNNPEATNALI  409 (541)
T ss_dssp             CGGGSSCSEECCC-----C---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEE----TTBHHHHHHHB
T ss_pred             ccccCceEEecCc-----ccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCee----CCChhhhhhcc
Confidence            6899877766532     24567899999999999999988899999999999999999999999    99999888877


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .        .++||+|         ||+|++|++|++ ++||+||+||++|.+
T Consensus       410 ~--------~~~~~~T---------GDl~~~~~~G~~~~~GR~~d~i~~~G~~  445 (541)
T d1lcia_         410 D--------KDGWLHS---------GDIAYWDEDEHFFIVDRLKSLIKYKGYQ  445 (541)
T ss_dssp             C--------TTSCEEE---------EEEEEECTTCCEEEC-----CEEETTEE
T ss_pred             c--------CCccccC---------CCeeEEcCCeEEEEeeeecCEEEECCEE
Confidence            5        5799999         999999999999 999999999999864

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.88  E-value=2.5e-23  Score=165.98  Aligned_cols=109  Identities=18%  Similarity=0.140  Sum_probs=92.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEc--CccccccccccCCCchhhHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG--PQIMKVAELEFWSDGGHDEE   78 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~g--p~~~~GY~~~~~~~~~~t~~   78 (133)
                      |||++.+++...   +.....+.+++|+|+++++++|+| ++|++++.|+.|||+|++  |+++.||    |++++.+.+
T Consensus       411 ~TE~g~~~~~~~---~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel~v~~~~p~~~~~~----~~~~~~~~~  482 (643)
T d1pg4a_         411 QTETGGFMITPL---PGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTL----FGDHERFEQ  482 (643)
T ss_dssp             CGGGSSCSBCCC---TTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEE----TTCHHHHHH
T ss_pred             hhhccceEEecC---CCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEEEEecCCCcccccc----cCChhhchh
Confidence            689887655432   223345678999999999999999 679999999999999999  5688999    999998888


Q ss_pred             HHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           79 IIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        79 ~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .+...      .+|||+|         ||+|++|+||+| |+||+||+||++|..
T Consensus       483 ~~~~~------~~g~~~T---------GDl~~~d~dG~l~i~GR~dd~ik~~G~r  522 (643)
T d1pg4a_         483 TYFST------FKNMYFS---------GDGARRDEDGYYWITGRVDDVLNVSGHR  522 (643)
T ss_dssp             HHHSS------STTSEEE---------EEEEEECTTSCEEEEEESSSEEEETTEE
T ss_pred             hhccc------CCCeEEc---------CCEEEECCCceEEEecccccEEEECCEE
Confidence            77422      4689999         999999999999 999999999999864

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=2.2e-23  Score=161.38  Aligned_cols=110  Identities=23%  Similarity=0.325  Sum_probs=90.1

Q ss_pred             CCCCCcccccccCCCCCCC------CCCCCccccCCCCcEEEEEcCCCCccCCC--CCCeEEEEEcCccccccccccCCC
Q 032813            1 MTEAGPVLSMCLGFAKQPF------PTKSGSCGTVVRNAELKVIDPEIGASLPH--NQPGEICIRGPQIMKVAELEFWSD   72 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~------~~~~~~vG~p~p~~~v~i~d~~~g~~~~~--g~~Gel~i~gp~~~~GY~~~~~~~   72 (133)
                      +||++.+++..........      ..+.+++|+|+|+++++|+| +++++++.  ++.|||+|+||+++.||    |++
T Consensus       319 ~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY----~~~  393 (534)
T d1v25a_         319 LTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGY----YGN  393 (534)
T ss_dssp             CGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSC----BTC
T ss_pred             ccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCccccee----cCC
Confidence            5888876655422111000      12346899999999999999 67888876  67899999999999999    999


Q ss_pred             chhhHHHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           73 GGHDEEIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        73 ~~~t~~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      ++.+++.|.        .+|||+|         ||+|++|+||+| ++||+||+||++|.+
T Consensus       394 ~~~t~~~~~--------~dg~~~T---------GDlg~~~~~G~l~~~GR~~~~i~~~G~~  437 (534)
T d1v25a_         394 EEATRSALT--------PDGFFRT---------GDIAVWDEEGYVEIKDRLKDLIKSGGEW  437 (534)
T ss_dssp             HHHHHTTBC--------TTSCEEE---------EEEEEECTTCCEEEEEESSCEEEETTEE
T ss_pred             hhhhhhhcc--------cCCCCcc---------CceeEECCCccEEEecccccEEEECCEE
Confidence            999998886        6799999         999999999999 999999999999864

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.86  E-value=4.3e-22  Score=153.08  Aligned_cols=114  Identities=17%  Similarity=0.122  Sum_probs=95.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      +||++.+++....  .........+.|+++++..+.+.| +++++++.|+.|||+|+||++++||    |++++.+.+.|
T Consensus       309 ~tE~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY----~~~~~~~~~~~  381 (514)
T d1amua_         309 PTETTICATTWVA--TKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGY----WKRPELTSQKF  381 (514)
T ss_dssp             CGGGSSCSEEEEC--CSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEE----TTCHHHHHHHE
T ss_pred             cccCceeeeeccc--cccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccc----cccccccceee
Confidence            6898877665543  222334557889999999999999 7899999999999999999999999    99999999998


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      .....  ...++||+|         ||+|++|+||+| |+||+||+||++|.+
T Consensus       382 ~~~~~--~~~~~~~~T---------GD~g~~d~~G~l~i~GR~~d~i~~~G~~  423 (514)
T d1amua_         382 VDNPF--VPGEKLYKT---------GDQARWLSDGNIEYLGRIDNQVKIRGHR  423 (514)
T ss_dssp             EECSS--STTSEEEEE---------EEEEEECTTSCEEEEEEGGGEEEETTEE
T ss_pred             Eeccc--cCCCceEEE---------CCEEEECCCCcEEEEecccCEEEECCEE
Confidence            53221  224689999         999999999999 999999999998854

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=7.9e-22  Score=156.35  Aligned_cols=111  Identities=22%  Similarity=0.276  Sum_probs=89.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccC-CCCCCeEEEEEc--CccccccccccCCCchhhH
Q 032813            1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASL-PHNQPGEICIRG--PQIMKVAELEFWSDGGHDE   77 (133)
Q Consensus         1 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~-~~g~~Gel~i~g--p~~~~GY~~~~~~~~~~t~   77 (133)
                      +||++..+.....  ......+++++|+|+|+++++|+|+++++.+ +.+..|||+|++  |+++.||    |++++++.
T Consensus       398 ~te~~~~~~~~~~--~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy----~~~~e~t~  471 (640)
T d1ry2a_         398 QTESGSHLVTPLA--GGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTI----WKNHDRYL  471 (640)
T ss_dssp             CTTTCSCSEECCT--TTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEE----TTCHHHHH
T ss_pred             ccccccccccccC--CCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCccccc----ccCHHHHH
Confidence            5787765544322  2233467789999999999999996655544 445679999998  6899999    99999999


Q ss_pred             HHHhhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           78 EIIKLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        78 ~~f~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                      +.|..+      .+|||+|         ||+|++|+||+| |+||+||+||++|.+
T Consensus       472 ~~~~~~------~~gw~~T---------GDlg~~d~dG~l~i~GR~dd~Ik~~G~~  512 (640)
T d1ry2a_         472 DTYLNP------YPGYYFT---------GDGAAKDKDGYIWILGRVDDVVNVSGHR  512 (640)
T ss_dssp             HHHTSS------STTSEEE---------EEEEEECTTCCEEECSCTTSCBCSSSCC
T ss_pred             hhhccC------CCCeEEc---------CCceeECCCCCEEEEEcCCCEEEECCEE
Confidence            988522      4589999         999999999999 999999999999865

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=1.9e-19  Score=138.21  Aligned_cols=89  Identities=19%  Similarity=0.241  Sum_probs=78.4

Q ss_pred             CCCccccCCCCc-EEEEEcCCCCccCCCCCCeEEEEEcCccccccccccCCCchhhHHHHhhhhcccCCCCcccccccCC
Q 032813           22 KSGSCGTVVRNA-ELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSSLGWASKAQAE  100 (133)
Q Consensus        22 ~~~~vG~p~p~~-~v~i~d~~~g~~~~~g~~Gel~i~gp~~~~GY~~~~~~~~~~t~~~f~~~~~~~~~~~gw~~t~~~~  100 (133)
                      ..+++|+|+++. .+.|.+ +++++++.++.|||+++|+.++.||    +++++.+...+.        .++||+|    
T Consensus       349 ~~~~~g~p~~~~~~~~v~~-~~g~~~~~~~~Gel~v~g~~~~~gY----~~~~~~~~~~~~--------~~~~~~t----  411 (536)
T d1mdba_         349 IVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGY----YKAEEHNAASFT--------EDGFYRT----  411 (536)
T ss_dssp             HHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSC----TTCHHHHHHHBC--------TTSCEEE----
T ss_pred             ccCCcccCCCCcceEEEEc-CCCCeecccccceeecCCCcccccc----cccccccccccc--------ccCcccc----
Confidence            456899998655 455555 7899999999999999999999999    999998888876        6799999    


Q ss_pred             CCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813          101 PGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus       101 ~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                           ||++++++||+| ++||+||+||++|.+
T Consensus       412 -----GD~~~~~~dG~l~~~GR~~d~i~~~G~~  439 (536)
T d1mdba_         412 -----GDIVRLTRDGYIVVEGRAKDQINRGGEK  439 (536)
T ss_dssp             -----EEEEEECTTSCEEEEEEGGGCEECSSCE
T ss_pred             -----CccccccCCCceecCCCcceEEEECCEE
Confidence                 999999999999 999999999999864

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.55  E-value=1.5e-15  Score=114.63  Aligned_cols=103  Identities=16%  Similarity=0.089  Sum_probs=76.6

Q ss_pred             CCCCcccccccCCCCCCCCCCCCccccCCCCcEEEEEcCCCCccCCCCCCeEEEEEc-CccccccccccCCCchhhHHHH
Q 032813            2 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRG-PQIMKVAELEFWSDGGHDEEII   80 (133)
Q Consensus         2 TE~~~~~~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~g~~~~~g~~Gel~i~g-p~~~~GY~~~~~~~~~~t~~~f   80 (133)
                      ||++..+.....     ......+.+.+.+...+.+.+ ..++.++.|+.|++++.+ +....+|    +++++.+++.|
T Consensus       307 ~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~----~~~~~~t~~~~  376 (503)
T d3cw9a1         307 TEAMNSLYMRQP-----KTGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGY----LNQPQATAEKL  376 (503)
T ss_dssp             TTTEEEEEEESC-----SSSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCB----TTCHHHHHHHE
T ss_pred             cccceeeeeccc-----cccccccccccccceeeeeec-ccCcccCCCccccccccccccccccc----cCChhhhHHHh
Confidence            666655444321     122233444444444554555 678999999999988876 4556677    89999999988


Q ss_pred             hhhhcccCCCCcccccccCCCCCCCCcEEEEcCCCeE-EEeecCCeEEeCCCC
Q 032813           81 KLNRLTMGSSLGWASKAQAEPGRWAFDLALRTRAGYE-LKKRKKVWVRFDPLF  132 (133)
Q Consensus        81 ~~~~~~~~~~~gw~~t~~~~~~~~tGD~g~~d~dG~l-~~GR~dd~Iki~~~~  132 (133)
                               .+|||+|         ||+|++|+||+| ++||+||+||++|.+
T Consensus       377 ---------~~g~~~T---------gD~g~~~~dG~l~~~GR~~d~ik~~G~~  411 (503)
T d3cw9a1         377 ---------QDGWYRT---------SDVAVWTPEGTVRILGRVDDMIISGGEN  411 (503)
T ss_dssp             ---------ETTEEEE---------EEEEEECTTSCEEEEEESSCCEEETTEE
T ss_pred             ---------cCCceec---------ccccccccCCeEEeCCCcCCeEEECCEE
Confidence                     4799999         999999999999 999999999999864