Citrus Sinensis ID: 032830

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLEDEKAETTQACAEP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccccccHHEEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MYAFLALFAVGELLVfatqgpvnficlhcvkpsirplsMAISTVSIhifgdvpssplvgvLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSvdkfsednedkvsrierskttplledekaettqacaep
Flexible Loop (DISEMBL)
MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFsednedkvsrierskttplledekaettqacaep
Low Complexity Region (SEG)
MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLEDEKAETTQACAEP
Disordered region (IsUnstruct)
*YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDK***********************************
Disordered Region (DISOPRED)
MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHS**************************************
Disordered Region (DISEMBL)
MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFS*********IERSKTTPLLE*************
Disordered Region (DISPRO)
MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVD************************************
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLEDEKAETTQACAEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q9FLG8	484	Probable sphingolipid tra	yes	no	0.893	0.243	0.776	2e-48
F4IKF6	510	Probable sphingolipid tra	no	no	0.818	0.211	0.672	1e-39
Q6NMN6	492	Probable sphingolipid tra	no	no	0.734	0.197	0.701	1e-36

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/121 (77%), Positives = 108/121 (89%), Gaps = 3/121 (2%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           MYAFLALFAVGELLVFATQGPVNFI LHCVKPS+RPL+MA+STVSIHIFGDVPSSPLVGV
Sbjct: 365 MYAFLALFAVGELLVFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGV 424

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNE-DKVSRIERSKTTPLLE 119
           LQD VNNWR T+L+LT +LFPAAAIW IGIFL+SVD+++ED+E D V+R   S   PLL+
Sbjct: 425 LQDYVNNWRVTSLVLTFVLFPAAAIWSIGIFLNSVDRYNEDSEPDAVTR--ESTAAPLLQ 482

Query: 120 D 120
           +
Sbjct: 483 E 483

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.
Arabidopsis thaliana (taxid: 3702)

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 95/110 (86%), Gaps = 2/110 (1%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           +Y F+ALFA+GELLVFATQ PVN++CLHCVKPS+RPLSMAISTV+IHIFGDVPSSPLVG+
Sbjct: 390 LYGFIALFALGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGI 449

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIE 110
           +QD +N+WR+T LILT+ILF AAAIWFIG    +++ F  ++E  + +I+
Sbjct: 450 VQDHINSWRKTTLILTSILFLAAAIWFIGKI--NLNSFYSNDESFLVQIK 497

Probable sphingolipid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 84/97 (86%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           MYAF+ALFAVGE+L+FA Q PVNF+CLHCV+P++RPLSMA STV IHI GDVPSSPL G 
Sbjct: 371 MYAFIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGK 430

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDK 97
           +QD + NWR++ LI+T+ILF AA IW IGIF++SVD+
Sbjct: 431 MQDHLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDR 467

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
255554517	541	transporter, putative [Ricinus communis]	1.0	0.243	0.795	6e-56
296088668	427	unnamed protein product [Vitis vinifera]	0.984	0.304	0.761	4e-55
359496250	466	PREDICTED: protein spinster homolog 1-li	0.984	0.278	0.761	8e-55
356519493	530	PREDICTED: protein spinster homolog 1-li	0.962	0.239	0.763	1e-53
357476101	562	Spinster-like protein [Medicago truncatu	0.977	0.229	0.753	6e-53
356527981	537	PREDICTED: protein spinster homolog 1-li	0.962	0.236	0.755	9e-53
356546730	532	PREDICTED: protein spinster homolog 1-li	0.954	0.236	0.753	2e-52
356557609	496	PREDICTED: LOW QUALITY PROTEIN: protein	0.992	0.264	0.702	7e-49
357446115	525	Spinster-like protein [Medicago truncatu	0.977	0.245	0.674	2e-48
224105833	468	sugar transporter/spinster transmembrane	0.893	0.252	0.756	4e-48

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 105/132 (79%), Positives = 118/132 (89%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           MY FLALFA+GELLVFATQGPVN+ICLHCVKPS+RPLSMA+S VSIHIFGDVPSSPLVGV
Sbjct: 410 MYVFLALFAIGELLVFATQGPVNYICLHCVKPSMRPLSMAMSIVSIHIFGDVPSSPLVGV 469

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLED 120
           LQD++NNWR TALILTAILFPAA IWFIGIFL SVDKF+E++E +V+  +RS TTPLLE 
Sbjct: 470 LQDKINNWRLTALILTAILFPAAFIWFIGIFLKSVDKFNEESEHQVAVTDRSNTTPLLEG 529

Query: 121 EKAETTQACAEP 132
           + AETT   AEP
Sbjct: 530 KTAETTATSAEP 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088668|emb|CBI38036.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 118/130 (90%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           +Y FLALF++GELLVFATQGPVN++CLHCVKPS+RPLSMA+STV+IHIFGDVPSSPLVGV
Sbjct: 298 LYGFLALFSIGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGV 357

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLED 120
           LQD VNNWRETALILT+ILF AA IWFIGIFLH VD+F+E++E   +RI++S TTPLLED
Sbjct: 358 LQDSVNNWRETALILTSILFLAAGIWFIGIFLHGVDRFNEESEHHATRIDKSNTTPLLED 417

Query: 121 EKAETTQACA 130
           + A+T +A A
Sbjct: 418 KTADTAEASA 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496250|ref|XP_002264030.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 118/130 (90%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           +Y FLALF++GELLVFATQGPVN++CLHCVKPS+RPLSMA+STV+IHIFGDVPSSPLVGV
Sbjct: 337 LYGFLALFSIGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGV 396

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLED 120
           LQD VNNWRETALILT+ILF AA IWFIGIFLH VD+F+E++E   +RI++S TTPLLED
Sbjct: 397 LQDSVNNWRETALILTSILFLAAGIWFIGIFLHGVDRFNEESEHHATRIDKSNTTPLLED 456

Query: 121 EKAETTQACA 130
           + A+T +A A
Sbjct: 457 KTADTAEASA 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 115/127 (90%)

Query: 2   YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVL 61
           Y FLALFAVGELLVFATQGPVN++CLHCVKPS+RPLSMA+STV+IHIFGDVPSSPLVG++
Sbjct: 398 YGFLALFAVGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGLM 457

Query: 62  QDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLEDE 121
           QD++NNWR TALILT I FPAAAIWFIGIFL SVD+F+ED+E +VS +ER+ T PLLE+ 
Sbjct: 458 QDKINNWRTTALILTTIFFPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLLEEN 517

Query: 122 KAETTQA 128
            AET+ +
Sbjct: 518 TAETSAS 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476101|ref|XP_003608336.1| Spinster-like protein [Medicago truncatula] gi|355509391|gb|AES90533.1| Spinster-like protein [Medicago truncatula]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 98/130 (75%), Positives = 116/130 (89%), Gaps = 1/130 (0%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           MY FLALFA+GELLVFATQGPVNF+CLHCVKPS+RPLSMA+STV+IHIFGDVPS+PLVGV
Sbjct: 433 MYGFLALFAIGELLVFATQGPVNFVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSAPLVGV 492

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLED 120
           +QD +NNWR TALILT I FPAAAIWFIGIFL+S DKF+E++E +VSR+E + T PLLE+
Sbjct: 493 VQDHINNWRTTALILTTIFFPAAAIWFIGIFLNSKDKFNEESEHQVSRVEGTTTAPLLEE 552

Query: 121 EKAE-TTQAC 129
           + AE  +Q C
Sbjct: 553 KTAEPKSQEC 562

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527981|ref|XP_003532584.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  211 bits (536), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 114/127 (89%)

Query: 2   YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVL 61
           Y FLALFA GELLVFATQGPVN++CLHCVKPS+RPLSMA+STV+IHIFGDVPSSPLVG++
Sbjct: 405 YGFLALFAFGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGLI 464

Query: 62  QDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLEDE 121
           QD++NNWR TALILT I FPAAAIWFIGIFL SVD+F+ED+E +VS +ER+ T PLLE+ 
Sbjct: 465 QDKINNWRTTALILTTIFFPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLLEEG 524

Query: 122 KAETTQA 128
            AET+ +
Sbjct: 525 TAETSAS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546730|ref|XP_003541776.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 112/126 (88%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           MY FLALF++GELLVFATQGPVN++CL CVKPS+RPLSMA+STV IHIFGDVPSSPLVGV
Sbjct: 400 MYGFLALFSIGELLVFATQGPVNYVCLRCVKPSLRPLSMAMSTVVIHIFGDVPSSPLVGV 459

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLED 120
           LQD +NNWR TALILT+ILF AA IWFIGIFLH+VD+F ED+E +VS +ERS T PLL++
Sbjct: 460 LQDNINNWRTTALILTSILFLAAGIWFIGIFLHTVDRFDEDSEHQVSNVERSNTMPLLQE 519

Query: 121 EKAETT 126
           +  ET+
Sbjct: 520 KTGETS 525

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557609|ref|XP_003547108.1| PREDICTED: LOW QUALITY PROTEIN: protein spinster homolog 1-like [Glycine max]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 111/131 (84%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           MY FLALF++GELLVFATQGPVN++CL CV PS+RPLSMA+S V+IHIF DVPSSPLVGV
Sbjct: 364 MYGFLALFSIGELLVFATQGPVNYVCLRCVIPSLRPLSMAMSAVAIHIFVDVPSSPLVGV 423

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLED 120
           LQD +NNWR TA ILT+ILF AA I FIGIFLHSVD+F ED+E +VS +ERS T PLL++
Sbjct: 424 LQDNINNWRTTAFILTSILFLAAGICFIGIFLHSVDRFDEDSEHQVSNVERSNTMPLLQE 483

Query: 121 EKAETTQACAE 131
           +  ET+ + A+
Sbjct: 484 KTGETSASPAQ 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446115|ref|XP_003593335.1| Spinster-like protein [Medicago truncatula] gi|355482383|gb|AES63586.1| Spinster-like protein [Medicago truncatula]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 113/129 (87%)

Query: 3   AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ 62
            FL LF++GELLVF+TQGPVN++CLHCVKPS+RPLS+A+STV+IH+FGDVPSSPLVGVLQ
Sbjct: 393 GFLVLFSIGELLVFSTQGPVNYVCLHCVKPSLRPLSIAMSTVAIHLFGDVPSSPLVGVLQ 452

Query: 63  DRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLEDEK 122
           D +N+WR T LILT ILFPAA IWFIGIF+HS+D+F + +E +VS++ERS T PLL+++ 
Sbjct: 453 DSINSWRTTVLILTTILFPAAGIWFIGIFVHSMDRFEDVSEHQVSKVERSCTIPLLQEKT 512

Query: 123 AETTQACAE 131
            ET+ + A+
Sbjct: 513 GETSLSPAQ 521

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105833|ref|XP_002313948.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa] gi|222850356|gb|EEE87903.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 107/119 (89%), Gaps = 1/119 (0%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           MYAFLA FA+GELLVFATQ PVN++CLHCVKPS+RP+SMA+STV+IHIFGDVPSSPLVGV
Sbjct: 350 MYAFLAFFAIGELLVFATQAPVNYVCLHCVKPSLRPISMAMSTVAIHIFGDVPSSPLVGV 409

Query: 61  LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNED-KVSRIERSKTTPLL 118
           LQD ++NWR+TALILT+ILFPAA IWFIGIFLH VD+F E++E  +V+  +RS T PLL
Sbjct: 410 LQDHIDNWRKTALILTSILFPAAVIWFIGIFLHGVDRFDEESEHPQVTTADRSNTMPLL 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.893	0.243	0.776	3.4e-45
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.75	0.194	0.745	8e-37
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.856	0.229	0.649	2.7e-36

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 94/121 (77%), Positives = 108/121 (89%)

Query:     1 MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
             MYAFLALFAVGELLVFATQGPVNFI LHCVKPS+RPL+MA+STVSIHIFGDVPSSPLVGV
Sbjct:   365 MYAFLALFAVGELLVFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGV 424

Query:    61 LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNE-DKVSRIERSKTTPLLE 119
             LQD VNNWR T+L+LT +LFPAAAIW IGIFL+SVD+++ED+E D V+R   S   PLL+
Sbjct:   425 LQDYVNNWRVTSLVLTFVLFPAAAIWSIGIFLNSVDRYNEDSEPDAVTR--ESTAAPLLQ 482

Query:   120 D 120
             +
Sbjct:   483 E 483

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 76/102 (74%), Positives = 91/102 (89%)

Query:     1 MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
             +Y F+ALFA+GELLVFATQ PVN++CLHCVKPS+RPLSMAISTV+IHIFGDVPSSPLVG+
Sbjct:   390 LYGFIALFALGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGI 449

Query:    61 LQDRVNNWRETALILTAILFPAAAIWFIG-IFLHSVDKFSED 101
             +QD +N+WR+T LILT+ILF AAAIWFIG I L+S   +S D
Sbjct:   450 VQDHINSWRKTTLILTSILFLAAAIWFIGKINLNSF--YSND 489

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 76/117 (64%), Positives = 96/117 (82%)

Query:     1 MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
             MYAF+ALFAVGE+L+FA Q PVNF+CLHCV+P++RPLSMA STV IHI GDVPSSPL G 
Sbjct:   371 MYAFIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGK 430

Query:    61 LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDK---FSEDNEDKVSRIERSKT 114
             +QD + NWR++ LI+T+ILF AA IW IGIF++SVD+    SED+E +  ++E SKT
Sbjct:   431 MQDHLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRSNEVSEDDEVEEDKLE-SKT 486


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      132       132   0.00091  102 3  11 22  0.50    30
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  135 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.33u 0.08s 15.41t   Elapsed:  00:00:01
  Total cpu time:  15.33u 0.08s 15.41t   Elapsed:  00:00:01
  Start:  Fri May 10 05:20:27 2013   End:  Fri May 10 05:20:28 2013

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLG8	SPNS2_ARATH	No assigned EC number	0.7768	0.8939	0.2438	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrOATP2 sugar transporter/spinster transmembrane protein (468 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
TIGR00805	633	TIGR00805, oat, sodium-independent organic anion t	2e-04
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	0.002

>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 1   MYAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60
           +  FL LF     + F T  P+  + L  V P  R L++ +  + + +FG +P+  L G+
Sbjct: 518 LLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEERSLAIGLQWLCMRVFGTIPAPILFGL 577

Query: 61  LQDR 64
           L D 
Sbjct: 578 LIDV 581

The Organo Anion Transporter (OAT) Family (TC 2.A.60)Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 2   YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVL 61
             FL L A+   + F +  P+  I L CV P  + L++ +  + I + G +P+  + G L
Sbjct: 495 LYFLILMAILSFIGFLSAIPLYMIVLRCVPPEEKSLALGVQWLLIRLLGFIPAPIIFGAL 554

Query: 62  QDR 64
            D 
Sbjct: 555 IDS 557

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG3626	735	consensus Organic anion transporter [Secondary met	99.34
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.14
TIGR00805	633	oat sodium-independent organic anion transporter.	99.12
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.9
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.76
TIGR00893	399	2A0114 d-galactonate transporter.	98.72
PRK11663	434	regulatory protein UhpC; Provisional	98.67
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.62
PRK10489	417	enterobactin exporter EntS; Provisional	98.62
PRK03893	496	putative sialic acid transporter; Provisional	98.57
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.56
TIGR00900	365	2A0121 H+ Antiporter protein.	98.54
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.53
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.52
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.52
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.5
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.49
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.49
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.49
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.47
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.45
PRK05122	399	major facilitator superfamily transporter; Provisi	98.43
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.42
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.42
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.42
PRK03545	390	putative arabinose transporter; Provisional	98.41
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.41
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.36
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.35
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.35
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.33
PRK11663	434	regulatory protein UhpC; Provisional	98.33
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.32
TIGR00895	398	2A0115 benzoate transport.	98.32
PRK12382	392	putative transporter; Provisional	98.31
TIGR00893	399	2A0114 d-galactonate transporter.	98.31
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.27
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.27
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.26
PRK10504	471	putative transporter; Provisional	98.26
PRK09874	408	drug efflux system protein MdtG; Provisional	98.24
KOG2532	466	consensus Permease of the major facilitator superf	98.24
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.23
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.22
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.21
PRK10091	382	MFS transport protein AraJ; Provisional	98.2
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.2
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.18
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.17
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.17
PRK09874	408	drug efflux system protein MdtG; Provisional	98.16
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.16
TIGR00891	405	2A0112 putative sialic acid transporter.	98.16
PRK09528	420	lacY galactoside permease; Reviewed	98.15
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.15
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.15
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.14
PRK10489	417	enterobactin exporter EntS; Provisional	98.13
PRK10642	490	proline/glycine betaine transporter; Provisional	98.11
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.11
PRK03545	390	putative arabinose transporter; Provisional	98.11
PRK11010	491	ampG muropeptide transporter; Validated	98.1
PRK03893	496	putative sialic acid transporter; Provisional	98.09
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.09
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.08
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.08
PRK11902	402	ampG muropeptide transporter; Reviewed	98.07
PRK12307	426	putative sialic acid transporter; Provisional	98.07
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.06
PRK11010	491	ampG muropeptide transporter; Validated	98.05
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.05
KOG2533	495	consensus Permease of the major facilitator superf	98.04
TIGR00805	633	oat sodium-independent organic anion transporter.	98.02
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.99
TIGR00891	405	2A0112 putative sialic acid transporter.	97.98
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.97
TIGR00901	356	2A0125 AmpG-related permease.	97.97
PRK11043	401	putative transporter; Provisional	97.97
PRK15011	393	sugar efflux transporter B; Provisional	97.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.94
PRK05122	399	major facilitator superfamily transporter; Provisi	97.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.92
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.92
PRK09705	393	cynX putative cyanate transporter; Provisional	97.92
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.92
PRK12382	392	putative transporter; Provisional	97.9
PRK15011	393	sugar efflux transporter B; Provisional	97.9
PRK09952	438	shikimate transporter; Provisional	97.9
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.89
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.89
PRK10054	395	putative transporter; Provisional	97.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.88
PRK03699	394	putative transporter; Provisional	97.87
PRK09705	393	cynX putative cyanate transporter; Provisional	97.86
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.86
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.86
PRK10642	490	proline/glycine betaine transporter; Provisional	97.85
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.84
PRK15075	434	citrate-proton symporter; Provisional	97.84
KOG3762	618	consensus Predicted transporter [General function	97.81
PLN00028	476	nitrate transmembrane transporter; Provisional	97.8
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.8
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.78
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.76
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.76
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.76
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.76
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.75
PRK12307	426	putative sialic acid transporter; Provisional	97.74
PRK15075	434	citrate-proton symporter; Provisional	97.73
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.73
PRK03633	381	putative MFS family transporter protein; Provision	97.73
PRK10504	471	putative transporter; Provisional	97.71
PLN00028	476	nitrate transmembrane transporter; Provisional	97.71
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.69
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.69
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.68
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.68
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.68
KOG2615	451	consensus Permease of the major facilitator superf	97.67
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.67
TIGR00900	365	2A0121 H+ Antiporter protein.	97.67
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.66
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.64
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.63
PRK09952	438	shikimate transporter; Provisional	97.61
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.61
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.58
TIGR00898	505	2A0119 cation transport protein.	97.56
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.55
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.54
PRK03699	394	putative transporter; Provisional	97.53
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.53
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.52
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.5
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.49
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.49
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.47
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.46
PTZ00207	591	hypothetical protein; Provisional	97.45
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.4
PRK11902	402	ampG muropeptide transporter; Reviewed	97.4
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.37
TIGR00898	505	2A0119 cation transport protein.	97.36
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.35
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.34
PRK10091	382	MFS transport protein AraJ; Provisional	97.3
PRK10054	395	putative transporter; Provisional	97.28
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.21
PRK10429	473	melibiose:sodium symporter; Provisional	97.21
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.19
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.15
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.15
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.11
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.05
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.05
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.03
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.01
PRK09848	448	glucuronide transporter; Provisional	97.01
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.9
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.85
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.84
PRK10133	438	L-fucose transporter; Provisional	96.81
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.79
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.75
PRK11043	401	putative transporter; Provisional	96.71
TIGR00895	398	2A0115 benzoate transport.	96.68
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.67
PRK03633	381	putative MFS family transporter protein; Provision	96.67
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.66
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.63
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.44
PRK09528	420	lacY galactoside permease; Reviewed	96.42
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.37
PRK10133	438	L-fucose transporter; Provisional	96.27
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.25
PRK09669	444	putative symporter YagG; Provisional	96.24
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.12
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	95.89
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.88
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.72
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	95.66
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.57
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	95.52
KOG2532	466	consensus Permease of the major facilitator superf	95.49
PRK11462	460	putative transporter; Provisional	95.41
PRK14995	495	methyl viologen resistance protein SmvA; Provision	95.33
PRK10473	392	multidrug efflux system protein MdtL; Provisional	95.24
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	95.06
PRK09669	444	putative symporter YagG; Provisional	95.06
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	95.05
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.02
TIGR00896	355	CynX cyanate transporter. This family of proteins	94.92
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.9
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	94.78
PF13347	428	MFS_2: MFS/sugar transport protein	94.77
KOG2816	463	consensus Predicted transporter ADD1 (major facili	94.76
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.7
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	94.63
PRK11652	394	emrD multidrug resistance protein D; Provisional	94.58
KOG0569	485	consensus Permease of the major facilitator superf	94.55
KOG3764	464	consensus Vesicular amine transporter [Intracellul	94.48
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	94.28
KOG3626	735	consensus Organic anion transporter [Secondary met	94.21
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	94.0
PRK11462	460	putative transporter; Provisional	93.99
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	93.92
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	93.69
PRK14778	186	lipoprotein signal peptidase; Provisional	93.65
PF13347	428	MFS_2: MFS/sugar transport protein	93.43
KOG2533	495	consensus Permease of the major facilitator superf	93.33
PRK10429	473	melibiose:sodium symporter; Provisional	93.17
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	92.98
PTZ00207	591	hypothetical protein; Provisional	92.85
KOG0254	513	consensus Predicted transporter (major facilitator	92.45
COG0477	338	ProP Permeases of the major facilitator superfamil	91.85
COG2211	467	MelB Na+/melibiose symporter and related transport	91.83
KOG2325	488	consensus Predicted transporter/transmembrane prot	91.74
PRK15403	413	multidrug efflux system protein MdtM; Provisional	91.62
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.53
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	91.34
PF12832	77	MFS_1_like: MFS_1 like family	90.66
KOG0569	485	consensus Permease of the major facilitator superf	90.58
TIGR00901	356	2A0125 AmpG-related permease.	90.54
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	89.92
COG2211	467	MelB Na+/melibiose symporter and related transport	89.76
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	89.59
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	88.63
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	88.22
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	88.04
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	87.13
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	86.61
PF15061	58	DUF4538: Domain of unknown function (DUF4538)	86.07
KOG0254	513	consensus Predicted transporter (major facilitator	84.5
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	83.91
PRK09848	448	glucuronide transporter; Provisional	83.89
PF00939	471	Na_sulph_symp: Sodium:sulfate symporter transmembr	82.92
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	82.48
PRK14794	136	lipoprotein signal peptidase; Provisional	82.09
PF11118	77	DUF2627: Protein of unknown function (DUF2627); In	81.81
KOG2816	463	consensus Predicted transporter ADD1 (major facili	81.45
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	81.42
PRK14772	190	lipoprotein signal peptidase; Provisional	80.59

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.34  E-value=3.4e-12  Score=112.33  Aligned_cols=93  Identities=28%  Similarity=0.459  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh----------------
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV----------------   65 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~----------------   65 (132)
                      +.|+++++++.|+.+....|...+++|+||+++|+.|+|+..++.+++|.+|+|+++|+++|..                
T Consensus       587 ~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~tCl~W~~~C~~~GsC~i  666 (735)
T KOG3626|consen  587 LIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTTCLLWGKSCGSRGSCLI  666 (735)
T ss_pred             HHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhHHHHhhcccCCCCceee
Confidence            5789999999999999999999999999999999999999999999999999999999999985                


Q ss_pred             ---hhHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 032830           66 ---NNWRETALILTAILFP-AAAIWFIGIFLHS   94 (132)
Q Consensus        66 ---g~~r~a~~~~~~~~iv-~~~~~~~~~~~~~   94 (132)
                         ..+|+.|..+.+.+.. +.+.+.+.++..|
T Consensus       667 Yd~~~lr~~y~gl~~~~~~~~~i~~i~~~~v~r  699 (735)
T KOG3626|consen  667 YDNDSLRYRYLGLHIILKVIALILLIIDLYVWR  699 (735)
T ss_pred             echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               1299988776555533 4444444444333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.14  E-value=8.1e-11  Score=98.35  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHH--HHHHHhhhhHHHHHHHHHHHH
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLV--GVLQDRVNNWRETALILTAIL   79 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~--G~l~D~~g~~r~a~~~~~~~~   79 (132)
                      +++.+++++.++++++.++|+..++.+++|+++||+..++++...| +|+++.|+++  |++.++.+ ||.+|++.+++.
T Consensus       118 ~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shN-iGGal~~~~~~la~~~~~~~-w~~~f~~pgiia  195 (448)
T COG2271         118 FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHN-IGGALAPLVALLAFFAFHGG-WRAAFYFPGIIA  195 (448)
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhh-cccchHHHHHHHHHHHhccc-hhHHHHHHHHHH
Confidence            5788999999999999999999999999999999999999999977 5668888888  99999988 999999987555


Q ss_pred             HHHH
Q 032830           80 FPAA   83 (132)
Q Consensus        80 iv~~   83 (132)
                      ++.+
T Consensus       196 iiva  199 (448)
T COG2271         196 IIVA  199 (448)
T ss_pred             HHHH
Confidence            4433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.12  E-value=1.7e-10  Score=100.45  Aligned_cols=91  Identities=26%  Similarity=0.437  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh----h-----------
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV----N-----------   66 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~----g-----------   66 (132)
                      +.|++++++..++.+....|...+++|+||+++|+.|+|+..++.+++|.+|||+++|+++|+.    +           
T Consensus       519 ~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~sC~~W~~~~cg~~g~C~  598 (633)
T TIGR00805       519 LYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVSCLHWQTLCCGARGACR  598 (633)
T ss_pred             HHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhchhheeccccCCCCCcee
Confidence            4688888899999999999999999999999999999999999999999999999999999984    1           


Q ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032830           67 -----NWRETALILTAILFPAAAIWFIGIFL   92 (132)
Q Consensus        67 -----~~r~a~~~~~~~~iv~~~~~~~~~~~   92 (132)
                           .+|+.+....+.+-+.++++.+.+|+
T Consensus       599 ~Yd~~~l~~~~~~~~~~~~~~~~~~~~~~~~  629 (633)
T TIGR00805       599 MYDNDNLRNIYLGLTIALRGSGLLLLFFILI  629 (633)
T ss_pred             eechHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 28888888776665554544444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.90  E-value=2.9e-09  Score=88.50  Aligned_cols=81  Identities=16%  Similarity=0.125  Sum_probs=63.7

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032830           10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG   89 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~   89 (132)
                      +.++......+....++.+.+|++++++++|+++...+ +|..+||++.|++.|.+|+|++.|++.++..+++++...+.
T Consensus       342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~~  420 (455)
T TIGR00892       342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVEC-CAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAIG  420 (455)
T ss_pred             HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHH-HHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHHH
Confidence            33444444456667888999999999999999999875 68899999999999998669999999877777766655544


Q ss_pred             HH
Q 032830           90 IF   91 (132)
Q Consensus        90 ~~   91 (132)
                      .+
T Consensus       421 ~~  422 (455)
T TIGR00892       421 NY  422 (455)
T ss_pred             HH
Confidence            44

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.76  E-value=5e-09  Score=88.51  Aligned_cols=100  Identities=32%  Similarity=0.378  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHH----------HH
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWR----------ET   71 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r----------~a   71 (132)
                      +..++++.++.+.....+++++-+++.++||++|++|.++...+.+++|+..+|.|.|.++|+..+|+          -+
T Consensus       350 ~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~~~~~~~~~~~s  429 (493)
T KOG1330|consen  350 IFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYKPAGGIDSVLQTS  429 (493)
T ss_pred             HHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCCccccccccccch
Confidence            45677888888888899999999999999999999999999999999999999999999999974455          45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 032830           72 ALILTAILFPAAAIWFIGIFLHSVDKFSED  101 (132)
Q Consensus        72 ~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~  101 (132)
                      ...+++.+..++..+....+....++|+..
T Consensus       430 ~~~~a~~l~~a~~~~~~~~f~v~~d~~~~~  459 (493)
T KOG1330|consen  430 LRLCAALLAKALIWSIGSPFGVCCDRYSFL  459 (493)
T ss_pred             hhhhHHHHHHHHHHhhccceeeeecccccc
Confidence            555555555555554444455555555433

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.72  E-value=2.7e-08  Score=77.56  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      .+++..++.+++.....+.....+.+++|+++|++++++.....+ +|..+||.+.|++.+..+ ||+.+.+.++..++
T Consensus        84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~  160 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQG-LGGIIGGPLVGWILIHFS-WQWAFIIEGVLGII  160 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHH
Confidence            344555666666677777788899999999999999999998865 688999999999999999 99999887544433

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.67  E-value=1.6e-07  Score=77.26  Aligned_cols=73  Identities=15%  Similarity=0.084  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF   80 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~i   80 (132)
                      +..++.+++.+...++...++.+++|+++|++++++++...+ +|..++|++.|++.|.+| ||+.|.+.++..+
T Consensus       116 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~-~g~~~~~~~~~~l~~~~g-w~~~f~~~~i~~~  188 (434)
T PRK11663        116 LLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHN-VGGALIPLVVGAIALHYG-WRYGMMIAGIIAI  188 (434)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccc-HHHHHHHHHHHHH
Confidence            334445666666677788899999999999999999998865 688999999999999999 9999988754433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.62  E-value=5.8e-08  Score=75.45  Aligned_cols=80  Identities=19%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .+++..++.+++.....+.....+.+++|+++|+++.++.....+ +|..+||.+.|++.|++| ||+.|++..+..+++
T Consensus        87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~~-~~~~~~~~~~~~~~~  164 (352)
T PF07690_consen   87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFS-LGSILGPLLGGFLISYFG-WRWAFLISAILSLIA  164 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHH-HHHHHHHHHHHHCCCHCH-HCCHHHHHHHHHHHH
T ss_pred             HHhhhccccccccccccccccccccccchhhhhhhccccccchhh-hhhhcccchhhhhhhccc-cccccccccchhhhh
Confidence            456666777777778888889999999999999999999999875 788999999999999989 999999886665555


Q ss_pred             HH
Q 032830           83 AA   84 (132)
Q Consensus        83 ~~   84 (132)
                      .+
T Consensus       165 ~i  166 (352)
T PF07690_consen  165 AI  166 (352)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.62  E-value=2e-07  Score=75.75  Aligned_cols=72  Identities=14%  Similarity=-0.079  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL   79 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~   79 (132)
                      +++++.+++.....+...+.+++.+|++.|++++|++....+ +|..+||.+.|++.|.+| .+.++...+...
T Consensus       317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~  388 (417)
T PRK10489        317 LCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNV-TGDAIGAALLGGLGAMMT-PVASASASGFGL  388 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh-hhHhHHHHHHHHHHHHhc-hhhHHHHHHHHH
Confidence            334444444444445556788999999999999999988764 788999999999999999 777777664433

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.57  E-value=2.1e-07  Score=76.94  Aligned_cols=56  Identities=11%  Similarity=0.102  Sum_probs=47.2

Q ss_pred             hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830           19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus        19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      .+.....+++.+|+++|++++|++....+ +|..+||++.|++.|++| |++++....
T Consensus       384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~lgp~l~g~l~~~~g-~~~~~~~~~  439 (496)
T PRK03893        384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGA-LGGALAPILGALIAQRLD-LGTALASLS  439 (496)
T ss_pred             chhhHHHHHhhCCHHHhhcccchhhhhhh-HHHHHHHHHHHHHhccCC-hHHHHHHHH
Confidence            34455678899999999999999888765 677899999999999999 998886554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.56  E-value=2.6e-07  Score=76.92  Aligned_cols=74  Identities=20%  Similarity=0.214  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .=++.++.++..++....+..+++||++|++|+++...... ++...|.+++.++.|.+| ||++|++.++..++.
T Consensus       107 aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~t-lA~v~GvPLGt~ig~~~G-WR~~F~~ia~l~ll~  180 (394)
T COG2814         107 ARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLT-LATVLGVPLGTFLGQLFG-WRATFLAIAVLALLA  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHH-HHHHHhccHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence            33456666677778888899999999999999999999875 788999999999999999 999999986554444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.54  E-value=3.5e-07  Score=71.29  Aligned_cols=77  Identities=5%  Similarity=-0.086  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      .+++..++.+++.....++..+.+.|++|+++|+++.++...... +|...||.+.|++.++.| ||+.+++..+..++
T Consensus        94 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~g-~~~~~~~~~~~~~~  170 (365)
T TIGR00900        94 QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRS-LFYIVGPGIGGLMYATLG-IKWAIWVDAVGFAI  170 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence            344455566666677777788999999999999999999999865 788999999999999999 99999876544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.53  E-value=4.9e-07  Score=74.74  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=47.6

Q ss_pred             HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830           24 FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus        24 ~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      ....+.+|+++|++++|+.++..++.|...||.+.|++.|++| |++.|.++...+++++
T Consensus       370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~  428 (452)
T PRK11273        370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAV  428 (452)
T ss_pred             HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence            4567899999999999999887664444458999999999999 9999998765555543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.52  E-value=8.4e-07  Score=59.73  Aligned_cols=77  Identities=18%  Similarity=0.268  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +++..++.++......+..+..+.+.+|+++|+++.++.....+ +|...+|.+.|++.|..+ |++.+.+.....+++
T Consensus        54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIA-LGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHH-HHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHH
Confidence            34445556666666667777889999999999999999998865 678999999999999888 999988765444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.52  E-value=1.7e-08  Score=86.68  Aligned_cols=64  Identities=27%  Similarity=0.561  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV   65 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~   65 (132)
                      ++|++++++..++.+....|...+++|+||+++|+.|+|+..++.+++|.+|||+++|+++|+.
T Consensus       452 ~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  452 IPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            5788888999999999999999999999999999999999999999999999999999999985

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.50  E-value=1.9e-07  Score=77.03  Aligned_cols=72  Identities=15%  Similarity=0.173  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-hhHHHHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-NNWRETALILTAIL   79 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-g~~r~a~~~~~~~~   79 (132)
                      +.-++.++..+...+.....+.+++|+++|++++++.....+ +|..++|++.|++.|++ | ||+.|++.++..
T Consensus       136 ~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~  208 (465)
T TIGR00894       136 FCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ-LGTFIFLPISGWLCESWGG-WPMIFYVFGIVG  208 (465)
T ss_pred             HHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCC-CCeehhhhhHHH
Confidence            334455555566666777899999999999999999998765 78899999999999985 8 999999875443

>TIGR00889 2A0110 nucleoside transporter

Probab=98.49  E-value=7.4e-07  Score=73.44  Aligned_cols=74  Identities=16%  Similarity=0.119  Sum_probs=54.9

Q ss_pred             HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHH
Q 032830           11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN-----WRETALILTAILFPAAA   84 (132)
Q Consensus        11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~-----~r~a~~~~~~~~iv~~~   84 (132)
                      .++......+.....+.+.+|+++|+++.|+.+.....+|.++||++.|++.|++|+     |+.+|.+.++..+++++
T Consensus       318 ~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~  396 (418)
T TIGR00889       318 YGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAV  396 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence            333333444555667889999999999999997544457889999999999999642     99999887655555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.49  E-value=1.7e-06  Score=71.16  Aligned_cols=73  Identities=12%  Similarity=0.035  Sum_probs=55.3

Q ss_pred             HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh-hhhHHHHHHHHHHHHHHH
Q 032830            8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAILFPA   82 (132)
Q Consensus         8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~-~g~~r~a~~~~~~~~iv~   82 (132)
                      .++.+++.+...++....+.+++|+++|++++++++...+ +|..++|++.+.+.+. .+ ||++|++.++..++.
T Consensus       125 ~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~-~g~~~~~~l~~~~~~~~~~-w~~~f~~~~~~~~i~  198 (438)
T TIGR00712       125 LFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHN-IGGGIPPLLVLLGMAWFND-WHAALYFPAICAIIV  198 (438)
T ss_pred             HHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHH-hHhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            3455555566667777888899999999999999988875 5668888888776554 56 999999876554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.49  E-value=1.2e-07  Score=74.15  Aligned_cols=77  Identities=13%  Similarity=0.065  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchH-HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSS-PLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP-~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      .+++..++.+++.+...+..+..+.+++|+++|+++.++.....+ +|..++| .+.+.+.+..+ ||+.|.+.+...++
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  162 (379)
T TIGR00881        85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHN-VGGGLLPPLVLFGIAELYS-WHWVFIVPGIIAII  162 (379)
T ss_pred             HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccch-hHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHH
Confidence            445556666777777778888999999999999999999988765 6778888 56677777778 99998876544433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.47  E-value=1e-06  Score=73.21  Aligned_cols=64  Identities=16%  Similarity=0.178  Sum_probs=52.3

Q ss_pred             HHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH------------hhhhHHHHHHHHHHHHHHHHHHHH
Q 032830           23 NFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD------------RVNNWRETALILTAILFPAAAIWF   87 (132)
Q Consensus        23 ~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D------------~~g~~r~a~~~~~~~~iv~~~~~~   87 (132)
                      .....+.+|++.|++++|+.+...++.|..++|+++|++.|            ..| |+..|++..+..+++.++..
T Consensus       371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence            35566999999999999999988776677999999999999            556 99999888666666654443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.45  E-value=1.5e-06  Score=69.11  Aligned_cols=76  Identities=12%  Similarity=0.085  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      +++..++.+++.....++....+.+++|+++|++++++...... +|...+|++.|++.|.+| ||+.+.+.....++
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~  157 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMT-IAPLLAPIIGGWLLVWFS-WHAIFWVLALAAIL  157 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHH
Confidence            34444555666666667778899999999999999999988765 688999999999999999 99999876544433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.43  E-value=1.8e-06  Score=69.52  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=54.8

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .+.+++.....+.......+.+|+++|++++|+++...+ +|..++|++.|++.|++| |++.+.+.++..+++
T Consensus       310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~  381 (399)
T PRK05122        310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLD-LSLGITGPLAGLVASWFG-YPSIFLAAALAALLG  381 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence            344444444444555667788999999999999998865 576889999999999999 999998876554444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.42  E-value=1.5e-06  Score=68.78  Aligned_cols=77  Identities=12%  Similarity=-0.007  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +++..++.++......++...++.+.+|+++|+++.++...... +|...||.+.|++.|+++ ||+.+.+.+...++.
T Consensus        96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~  172 (385)
T TIGR00710        96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLA-LAPAVAPLLGGYILVWLS-WHAIFAFLSLAGILL  172 (385)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence            34444555555566667788899999999999999999998865 677899999999999999 999998765444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.42  E-value=2.5e-06  Score=73.25  Aligned_cols=81  Identities=21%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      |+.++.+++.+++.....++.+..+|..+|++.||++.+++.++.. .+..+|..+.|++.|++| .+.++.+.++.+++
T Consensus       308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~-g~~~lGsll~G~la~~~g-~~~al~~a~~~lll  385 (524)
T PF05977_consen  308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF-GGMPLGSLLWGFLADHFG-VRTALLIAGAALLL  385 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence            4556677778888888888888999999999999999999998864 567889999999999999 99888876655444


Q ss_pred             HHH
Q 032830           82 AAA   84 (132)
Q Consensus        82 ~~~   84 (132)
                      +.+
T Consensus       386 ~~~  388 (524)
T PF05977_consen  386 SAL  388 (524)
T ss_pred             HHH
Confidence            443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.42  E-value=3.6e-07  Score=74.94  Aligned_cols=78  Identities=17%  Similarity=0.084  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .+++..++.+++.+...+.....+.+++|+++|+++.+++..... +|..+||.+.|++.|++| ||+.|++.....++.
T Consensus        92 ~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~  169 (485)
T TIGR00711        92 LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVL-VAPALGPTLGGWIIENYH-WRWIFLINVPIGIIV  169 (485)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHhhhhhccHhHhccCcC-ceehhhhhhHHHHHH
Confidence            344455556666666677788899999999999999999988864 788999999999999999 999999875444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.41  E-value=1.5e-06  Score=70.03  Aligned_cols=74  Identities=11%  Similarity=0.068  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ..++.++..+...+.....+.+++|+++|++++|++....+ +|...||++.+.+.+++| ||+.|++.++..++.
T Consensus       103 ~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~-~g~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~l~  176 (390)
T PRK03545        103 SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTA-LAMVLGLPLGRVIGQYLG-WRTTFLAIGGGALIT  176 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHH-HHHHHHhhHHHHHHHHhc-HHHHHHHHHHHHHHH
Confidence            33344444444456677888999999999999999988865 688999999999999999 999999876544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.41  E-value=1.2e-06  Score=73.56  Aligned_cols=75  Identities=13%  Similarity=0.064  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhc-CCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCV-KPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~v-p~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      ++.-++.+++.+...+....++.+.+ |+++|+++.|++....+ +|...||++.|++.|++| |||.|++...+.++
T Consensus        98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~-~g~~~gp~lgg~l~~~~g-wr~~f~i~~~~~~~  173 (495)
T PRK14995         98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGS-GGAAFGPLVGGILLEHFY-WGSVFLINVPIVLV  173 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHH
Confidence            33334455555554455556666665 67999999999998865 788999999999999999 99999987544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.37  E-value=9.1e-07  Score=72.54  Aligned_cols=75  Identities=9%  Similarity=-0.024  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh------hhhHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR------VNNWRETALILTA   77 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~------~g~~r~a~~~~~~   77 (132)
                      +++.-++.+++.+...+.....+.+++|+++|+++++++....+ +|..++|++.|++.+.      .| ||++|.+.++
T Consensus        99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~~~~g-wr~~f~~~~~  176 (412)
T TIGR02332        99 LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMP-VTMALGLILSGYILALDGLMALKG-WQWLFLLEGF  176 (412)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCCccc-hhHHHHHHHH
Confidence            33444556666666666666788999999999999999998876 6889999999999853      57 9999998654


Q ss_pred             HHH
Q 032830           78 ILF   80 (132)
Q Consensus        78 ~~i   80 (132)
                      ..+
T Consensus       177 ~~l  179 (412)
T TIGR02332       177 PSV  179 (412)
T ss_pred             HHH
Confidence            433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.36  E-value=3.6e-06  Score=71.27  Aligned_cols=80  Identities=10%  Similarity=-0.000  Sum_probs=58.4

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCC--chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSI--RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   86 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~--R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~   86 (132)
                      .+.+++.+...+....++.+++|+++  |..+.+++.+..+ +|..+||++.|++.|++| ||++|.+..+..+++.+.+
T Consensus       120 ~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~-iG~~~gp~i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~  197 (500)
T PRK09584        120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSIN-IGSFFSMLATPWLAAKYG-WSVAFALSVVGMLITVVNF  197 (500)
T ss_pred             HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHH-HHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Confidence            33444445455666788899998654  4567888777776 688999999999999999 9999998765555655554


Q ss_pred             HHHH
Q 032830           87 FIGI   90 (132)
Q Consensus        87 ~~~~   90 (132)
                      ....
T Consensus       198 ~~~~  201 (500)
T PRK09584        198 AFCQ  201 (500)
T ss_pred             HHhH
Confidence            4443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.35  E-value=2e-06  Score=72.75  Aligned_cols=78  Identities=17%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCC--CchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPS--IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA   84 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~--~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~   84 (132)
                      ..++.+.+.+...+...+++.+.+|++  +|+.+.+++.+..| +|..+||.+.|++.|++| ||++|++.++..+++.+
T Consensus       111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~n-ig~~~g~~l~g~l~~~~g-w~~~F~i~~i~~~~~~~  188 (489)
T PRK10207        111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSIN-IGSLISLSLAPVIADKFG-YSVTYNLCGAGLIIALL  188 (489)
T ss_pred             HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHH-HHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHH
Confidence            344445555555667788999999987  45788999999887 688999999999999999 99999987554444443


Q ss_pred             HH
Q 032830           85 IW   86 (132)
Q Consensus        85 ~~   86 (132)
                      .+
T Consensus       189 ~~  190 (489)
T PRK10207        189 VY  190 (489)
T ss_pred             HH
Confidence            33

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.35  E-value=1.8e-06  Score=72.59  Aligned_cols=74  Identities=11%  Similarity=0.021  Sum_probs=57.2

Q ss_pred             HHHHHHHHhcchhHHHHHhHhhcCCCC---chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830            8 FAVGELLVFATQGPVNFICLHCVKPSI---RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus         8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~---R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      ..+.+++.+...+...+++.+++|+++   |+.+.+++....+ +|..+||++.|++.|++| |++.|.+.++..+++.
T Consensus       109 ~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~n-iG~~ig~~l~g~l~~~~g-~~~~f~~~~~~~~~~~  185 (475)
T TIGR00924       109 LGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSIN-IGSFISPLLAGVIAENYG-YHVGFNLAAVGMVIGL  185 (475)
T ss_pred             HHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHH-HHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Confidence            334444445555667788899998764   8889999998887 688999999999999999 9999998765444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.33  E-value=2.8e-06  Score=69.28  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA   77 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~   77 (132)
                      ++++-.+.+++.+...+....++.|++|+++|+++.++.....+ +|...||++.+++.+.+| ||+.|++.++
T Consensus       111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~-~g~~ig~~l~~~l~~~~g-w~~~f~~~~~  182 (394)
T PRK10213        111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVS-IALVIAAPLGSFLGELIG-WRNVFNAAAV  182 (394)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcC-HHHHHHHHHH
Confidence            34444555666666667777888999999999999999998865 788999999999999999 9999988753

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.33  E-value=2.5e-06  Score=70.17  Aligned_cols=60  Identities=8%  Similarity=0.091  Sum_probs=49.5

Q ss_pred             HHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830           23 NFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA   84 (132)
Q Consensus        23 ~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~   84 (132)
                      .....+..|++.|++++|+.+...+ +|...+|+++|++.|++| |+..|.+.+...+++++
T Consensus       359 ~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~  418 (434)
T PRK11663        359 GMAAAECSHKEAAGAATGFVGLFAY-LGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISAL  418 (434)
T ss_pred             HHHHHhcccHhhHHhHHHHHHHHHH-HHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999876 677999999999999999 99999877655544443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.32  E-value=7.2e-08  Score=81.62  Aligned_cols=85  Identities=11%  Similarity=-0.028  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      |+++++=.+.+..-+...+....++.|.+|..+|+++.+++.++++ .|.++|-+..+.+.+..++|||+|.+.+++.++
T Consensus       122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip-vGsglG~vvgs~va~~~~~Wr~af~~~avl~vi  200 (493)
T KOG1330|consen  122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIP-VGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVI  200 (493)
T ss_pred             HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcc-cccceeEEeeeeeccCccceEEEEEeehHHHHH
Confidence            4555555666777777777788999999999999999999999997 688999999999999888899999998766655


Q ss_pred             HHHHHH
Q 032830           82 AAAIWF   87 (132)
Q Consensus        82 ~~~~~~   87 (132)
                      .+++.+
T Consensus       201 ~~~L~~  206 (493)
T KOG1330|consen  201 VGLLVF  206 (493)
T ss_pred             HHHHHH
Confidence            544433

>TIGR00895 2A0115 benzoate transport

Probab=98.32  E-value=2.4e-07  Score=73.06  Aligned_cols=74  Identities=15%  Similarity=0.107  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL   79 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~   79 (132)
                      +++..++.+++.....++....+.+.+|+++|+++.++.....+ +|..++|.+.|++.|..| |++.+.+.+...
T Consensus       108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~  181 (398)
T TIGR00895       108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYP-IGAAVGGFLAGWLIPVFG-WRSLFYVGGIAP  181 (398)
T ss_pred             HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHH-HHHHHHHHHHHHHhhccc-ceeehhhhhhHH
Confidence            44445556666666677888899999999999999999988765 688999999999999999 999998765333

>PRK12382 putative transporter; Provisional

Probab=98.31  E-value=3.8e-06  Score=67.51  Aligned_cols=75  Identities=12%  Similarity=0.011  Sum_probs=58.0

Q ss_pred             HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830            8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA   84 (132)
Q Consensus         8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~   84 (132)
                      .++.++......+.....+++.+|+++|+++.|+++...+ +|..+||.+.|++.|+.| |++.|.+.....+++.+
T Consensus       309 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~  383 (392)
T PRK12382        309 AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQD-IAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGII  383 (392)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHH
Confidence            3344444444455566778889999999999999998865 677999999999999999 99999987655555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.31  E-value=3.4e-06  Score=65.76  Aligned_cols=68  Identities=9%  Similarity=0.126  Sum_probs=56.7

Q ss_pred             chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 032830           18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   86 (132)
Q Consensus        18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~   86 (132)
                      ..+.....+.+.+|+++|+++.|+.+...+ +|..++|.+.|++.|..|+|++.+.+.++..+++.+..
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIAGLTGGLINSLGN-LGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hhhHHHHHHHhhcChhHHHHHHHHHHHHHH-HhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            456677899999999999999999999875 67899999999999998879998888766655554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.27  E-value=3.4e-06  Score=70.16  Aligned_cols=68  Identities=21%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             HHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           12 ELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        12 ~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ++..+....+...++.+++| ++|++++++...... +|...+|++.|++.|.+| ||++|++.++..+++
T Consensus       119 G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~-~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~  186 (455)
T TIGR00892       119 GLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSP-VFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHC  186 (455)
T ss_pred             HhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence            44444444566677778886 789999999998865 677899999999999999 999999886555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.27  E-value=1.1e-05  Score=66.69  Aligned_cols=76  Identities=9%  Similarity=0.037  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      +++.++.+++.+...++....+.+++|+++|++++++++...++.+...+|++.+.+....| ||++|++.++..++
T Consensus       124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g-w~~~f~i~~~~~~~  199 (452)
T PRK11273        124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND-WHAALYMPAFAAIL  199 (452)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence            34445566666667777778888999999999999999888764433456655433333346 99999887544333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.26  E-value=4.8e-06  Score=67.89  Aligned_cols=72  Identities=7%  Similarity=-0.078  Sum_probs=54.9

Q ss_pred             HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      -++.++.... ..+....+.+++|+++|++++++...... +|..++|++.+++.+++| ||+.|.+.++..++.
T Consensus        86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~-lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~  157 (368)
T TIGR00903        86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMY-LGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHH
Confidence            3344444432 34555666899999999999999998865 788999999999999999 999998875444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10504 putative transporter; Provisional

Probab=98.26  E-value=4e-06  Score=69.09  Aligned_cols=75  Identities=13%  Similarity=0.060  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +..++.+++.+...+.....+.+.+|+++|+++.++.....+ +|..+||.+.|++.|++| ||+.|.+......++
T Consensus       103 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~g~l~~~~g-w~~~f~~~~~~~~l~  177 (471)
T PRK10504        103 LARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQ-VGPLLGPALGGLLVEYAS-WHWIFLINIPVGIIG  177 (471)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhhcc-HHHHHHHHHHHHHHH
Confidence            334455555555556677788999999999999999988765 677999999999999998 999998875444333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.24  E-value=6.9e-06  Score=65.81  Aligned_cols=75  Identities=11%  Similarity=0.038  Sum_probs=58.4

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   85 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~   85 (132)
                      .+.+++.....+.....+++..|+++|++..++++...+ +|...||.+.|++.|.+| |++.|.+..+..+++++.
T Consensus       319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~  393 (408)
T PRK09874        319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRD-IGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVY  393 (408)
T ss_pred             HHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHH-HHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHH
Confidence            344445555556666778889999999999999988765 688999999999999999 999999876655555433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.24  E-value=1.7e-06  Score=73.30  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh-hhhHHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAILFPA   82 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~-~g~~r~a~~~~~~~~iv~   82 (132)
                      .+++=++-|+..+...+..+.+..++.|+++|++..++...... +|.+.+-++.|++.+. +| |++.|++.+.+.++.
T Consensus       131 ~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q-~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~  208 (466)
T KOG2532|consen  131 LLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQ-LGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIW  208 (466)
T ss_pred             hHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHH
Confidence            34444556666677778888999999999999999999988864 7889999999999999 88 999999986555444


Q ss_pred             HHH
Q 032830           83 AAI   85 (132)
Q Consensus        83 ~~~   85 (132)
                      .++
T Consensus       209 ~~~  211 (466)
T KOG2532|consen  209 FIL  211 (466)
T ss_pred             HHH
Confidence            333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.23  E-value=8.7e-06  Score=66.84  Aligned_cols=75  Identities=12%  Similarity=-0.009  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +.-++.++..+...+.....+.|.+|+++|++++++.....+ +|...||++.|++.|++| ||+.|++.++..+++
T Consensus       109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~  183 (413)
T PRK15403        109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVL-VAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLIA  183 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHH
Confidence            333444444443344456778899999999999999988865 678999999999999888 999998876544433

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.22  E-value=7.4e-06  Score=70.17  Aligned_cols=90  Identities=17%  Similarity=0.126  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      +.++-++.|++.+... ..+..+..++|+++|++++|++..... +|.++++++.++ ...+| ||+-..+.-+.+...+
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~-vG~~Ia~~L~ql-l~s~g-Wr~y~~Ln~Isl~s~~  193 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVL-LGVFLSSVLGQL-LVTLG-WISYSTLNIISLVFMT  193 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHhcC-chhHHHHHHHHHHHHH
Confidence            3344455666666666 778899999999999999999999875 788999999999 55678 9987766533333333


Q ss_pred             HHHHHHHHHhhccc
Q 032830           84 AIWFIGIFLHSVDK   97 (132)
Q Consensus        84 ~~~~~~~~~~~~~~   97 (132)
                      +.+.++.++++.+|
T Consensus       194 ~a~~~a~~LP~~~~  207 (511)
T TIGR00806       194 FSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHhCCCCch
Confidence            44445556665555

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.21  E-value=3.9e-06  Score=65.46  Aligned_cols=70  Identities=6%  Similarity=-0.032  Sum_probs=55.1

Q ss_pred             HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .++......+.....+.+.+|+++|+++.|+.+...+ +|..++|++.|++.|+.| |++.+.+.++..+++
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKA-VAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence            3333344444556678899999999999999998876 678999999999999999 999998876554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.20  E-value=7.7e-06  Score=65.96  Aligned_cols=74  Identities=18%  Similarity=0.149  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF   80 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~i   80 (132)
                      ++..++.++..+...+.....+.+++|+++|+.+++++..... +|...||++.|++.|.+| ||++|.+.++..+
T Consensus        95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~  168 (382)
T PRK10091         95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMT-VANLLGIPLGTYLSQEFS-WRYTFLLIAVFNI  168 (382)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHH-HHHHHhccHHHHHhhhcc-HHHHHHHHHHHHH
Confidence            3344445555444455556778899999999999999887764 677889999999999989 9999998764433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.20  E-value=1.1e-05  Score=65.89  Aligned_cols=76  Identities=14%  Similarity=0.089  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      ++..++.++..+...++..+.+.+.+|+++|++++|+.....+ +|..+||.+.|++. .+| ||+.|++.++..++.+
T Consensus       103 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~~~~~~  178 (400)
T PRK11646        103 WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDS-AGAVIGALLGSWLL-QYD-FRLVCATGAVLFVLAA  178 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-Hhh-HHHHHHHHHHHHHHHH
Confidence            3344445555555556677889999999999999999999875 78899999999999 568 9999998765554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.18  E-value=1.3e-05  Score=61.60  Aligned_cols=77  Identities=18%  Similarity=0.151  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +++...+.++......++....+.+.+|+++|+++.++.....+ +|...||.+.+.+.|..+ |++.+.+.....+++
T Consensus        90 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  166 (352)
T cd06174          90 LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFG-LGALLGPLLGGLLAESLG-WRWLFLILAILGLLL  166 (352)
T ss_pred             HHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence            34445555666666677888899999999999999999998865 688999999999999988 999998875544443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.17  E-value=3.9e-06  Score=65.89  Aligned_cols=71  Identities=11%  Similarity=0.034  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      ...++.+++.....++....+.+.+|+++|+++.++.....+.+|..++|.+.|++.|+.|+|++.++...
T Consensus       317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       317 FLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            33444555555666778889999999999999999855455567888999999999999887777766654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.17  E-value=2.4e-06  Score=68.49  Aligned_cols=72  Identities=13%  Similarity=0.090  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHH---HHHHHhhhhHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLV---GVLQDRVNNWRETALILTA   77 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~---G~l~D~~g~~r~a~~~~~~   77 (132)
                      +++.-++.+++.+...+.....+.+++|+++|+++++++....+ +|..++|.+.   +.+.+..+ ||+.|.+..+
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~-w~~~f~~~~~  204 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAIT-FGILVAYGFGSGKVSLNNTLG-WRIPLGLQLI  204 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHH
Confidence            44444555555555666677889999999999999999988764 7888899988   66666777 9999998543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.16  E-value=1.8e-05  Score=63.41  Aligned_cols=62  Identities=16%  Similarity=0.129  Sum_probs=51.1

Q ss_pred             hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .+.....+.+.+|+++|+.+.++...... +|...+|.+.|++.|.++ ||+++.+.++..++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~  185 (408)
T PRK09874        124 VPNANALIATQVPRNKSGWALGTLSTGGV-SGALLGPLAGGLLADSYG-LRPVFFITASVLFLC  185 (408)
T ss_pred             HHhHHHHHHHhcCHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence            45556778899999999999999988764 677899999999999999 999998876544443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.16  E-value=8.2e-06  Score=65.67  Aligned_cols=72  Identities=13%  Similarity=0.152  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA   77 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~   77 (132)
                      +++..++.++......+...+.+.+.+|+++|++++++...... +|..++|.+.+.+.+.++ ||+.|++.++
T Consensus       106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~  177 (406)
T PRK11551        106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVP-FGGALASVIGVLAAGDAA-WRHIFYVGGV  177 (406)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccccC-HHHHHHHHHH
Confidence            34445555666666667778899999999999999999998865 677889999888988888 9999987653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.16  E-value=9.4e-06  Score=64.33  Aligned_cols=70  Identities=11%  Similarity=0.096  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh-hHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN-NWRETALIL   75 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g-~~r~a~~~~   75 (132)
                      ++..++.+++.+...+.....+.+++|+++|+++.++...... +|..++|.+.+.+.+..+ +||+.+.+.
T Consensus       104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~l~~~l~~~~~~~w~~~f~~~  174 (405)
T TIGR00891       104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYA-VGAVVAAQVYSLVVPVWGDGWRALFFIS  174 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence            3444556666666677778889999999999999999988764 788999999999998764 499988764

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.15  E-value=7.6e-06  Score=66.67  Aligned_cols=61  Identities=21%  Similarity=0.144  Sum_probs=46.4

Q ss_pred             hHHHHHhHhhcCCCCchHHHHH-HHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           20 GPVNFICLHCVKPSIRPLSMAI-STVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi-~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ......+.+.+|++.|++..++ +++.. .+|.++||++.|++.|.+| |+..|...+++.+++
T Consensus       334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~  395 (420)
T PRK09528        334 VGVFKYITLNFDVRLSATIYLVGFQFAK-QLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLF  395 (420)
T ss_pred             HHHHHHHHHHcCccceeeeeeehHHHHH-HHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHH
Confidence            3344566788999999988665 45543 4788999999999999999 999999876544443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.15  E-value=1.3e-05  Score=68.44  Aligned_cols=66  Identities=12%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             hhHHHHHhHhhcCCC--CchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 032830           19 QGPVNFICLHCVKPS--IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   86 (132)
Q Consensus        19 ~~~~~~ii~~~vp~~--~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~   86 (132)
                      .+...+++.+.+|++  +|.++.+++....| +|...+|++.|++.+++| |++.|.++++..+++.+.+
T Consensus       118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n-lG~~iap~l~g~L~~~~G-w~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGN-VGSIIAPIACGYAQEEYS-WAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             cccHHHHHHHHCCCCCccccceehHHHHHHH-HHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHH
Confidence            344667889999975  79999999999988 577999999999999999 9999998765555554444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.15  E-value=1.4e-05  Score=64.29  Aligned_cols=68  Identities=12%  Similarity=0.065  Sum_probs=52.1

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830           10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI   78 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~   78 (132)
                      +.+++.....+.......+.+|+++|+++.|+++...+ +|..+||.+.|++.|+.+++...+......
T Consensus       317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~  384 (406)
T PRK11551        317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR-LGSMAGPLLAGQLLALGRSTVGVIGASIPV  384 (406)
T ss_pred             HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhh-HHHHHHhhhHhhhhccCCchHHHHHHHHHH
Confidence            33444444456667788999999999999999999865 677899999999999876577666655433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.14  E-value=1.7e-05  Score=63.82  Aligned_cols=72  Identities=8%  Similarity=-0.044  Sum_probs=55.8

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ++.++..+...+.....+.+.+|+++|+++.++.+...+ +|..++|.+.+++.|..| |++.+.+..+..++.
T Consensus        99 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~i~  170 (392)
T PRK10473         99 FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITC-IIPVLAPVLGHLIMLKFP-WQSLFYTMAAMGILV  170 (392)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcC-hHHHHHHHHHHHHHH
Confidence            344444444556677888999999999999999988765 667889999999999888 999998875444333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.13  E-value=1.2e-05  Score=65.40  Aligned_cols=69  Identities=16%  Similarity=-0.009  Sum_probs=54.3

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 032830           10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF   80 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~i   80 (132)
                      +.+++.....++....+.+.+|+++|+++.++.....+ +|...||.+.|++.|..+ |+|.+.+..+..+
T Consensus       119 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~g~l~~~~~-~~~~~~~~~~~~~  187 (417)
T PRK10489        119 WDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVR-LGSVISPALGGLLIAAGG-VAWNYGLAAAGTF  187 (417)
T ss_pred             HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh-HHHHhHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            33444444556667788999999999999999887764 688999999999999988 9999887654433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.11  E-value=2.5e-05  Score=65.42  Aligned_cols=58  Identities=16%  Similarity=0.036  Sum_probs=42.9

Q ss_pred             chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830           18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus        18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      ..+.....+.+.+|++.|++++|+........ ..++|.+.|++.|..++|+..+++..
T Consensus       359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~-g~~~p~i~g~l~~~~~~~~~~~~~~~  416 (490)
T PRK10642        359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLV-AGLTPTLAAWLVESTQNLMMPAYYLM  416 (490)
T ss_pred             HHHHHHHHHHHHCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHH
Confidence            34445566778999999999999744444444 48899999999998776776665543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.11  E-value=1.1e-05  Score=62.10  Aligned_cols=80  Identities=18%  Similarity=0.141  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      .++..++.+++.....+.....+++.+|+++|++.+|+.+...+ +|..++|.+.|++.|..+ |++.+.+.++..+++.
T Consensus       268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~  345 (352)
T cd06174         268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS-LGGALGPLLAGLLLDTGG-YGGVFLILAALALLAA  345 (352)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHH
Confidence            44556667777777788888999999999999999999999875 677999999999999888 9999998876665554


Q ss_pred             HH
Q 032830           84 AI   85 (132)
Q Consensus        84 ~~   85 (132)
                      ++
T Consensus       346 i~  347 (352)
T cd06174         346 LL  347 (352)
T ss_pred             HH
Confidence            43

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03545 putative arabinose transporter; Provisional

Probab=98.11  E-value=3.1e-05  Score=62.38  Aligned_cols=63  Identities=11%  Similarity=0.058  Sum_probs=49.3

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   85 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~   85 (132)
                      ......+++..| +.|++++|+++...+ +|...||++.|++.|++| ++..+.+..++.+++.++
T Consensus       313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~  375 (390)
T PRK03545        313 LAMQVKVLKLAP-DATDVAMALFSGIFN-IGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVW  375 (390)
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHH
Confidence            334456667655 689999999988765 688889999999999999 999998877665555444

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.10  E-value=3.9e-05  Score=64.72  Aligned_cols=68  Identities=15%  Similarity=0.153  Sum_probs=54.1

Q ss_pred             HhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830           15 VFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA   84 (132)
Q Consensus        15 ~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~   84 (132)
                      .....++.++..++.++++.+++..|+.+...+ +|...++++.|++.|.+| |+..|.+..+..+++.+
T Consensus       330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~-lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~  397 (491)
T PRK11010        330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSA-VGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLL  397 (491)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence            344456677888899999999999999998875 576778889999999999 99988877655555533

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.09  E-value=1.1e-05  Score=66.57  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      +++..++.+++.+...+.....+.+.+|+++|+++.++.....+ +|..++|.+.+++.+.++ ||+.|.+.
T Consensus       111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-w~~~f~~~  180 (496)
T PRK03893        111 LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFS-IGAVVAAQVYSLVVPVWG-WRALFFIG  180 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCC-HHHHHHHH
Confidence            34444555665666667778889999999999999999998765 688999999999999999 99998763

>TIGR01272 gluP glucose/galactose transporter

Probab=98.09  E-value=2.4e-05  Score=62.41  Aligned_cols=76  Identities=14%  Similarity=-0.001  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh---------------hh
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR---------------VN   66 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~---------------~g   66 (132)
                      +.+++.+++.+...+...+..|..+.++.|++.+++.+++...+. -+|..+||++.+.++..               ..
T Consensus        11 ~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~-~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~   89 (310)
T TIGR01272        11 VLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFN-KLGTTVAPLFGGSLILSGAGDLSMQVATANAEAA   89 (310)
T ss_pred             HHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHH
Confidence            567888888899999999999999999999999999999999986 47889999999998842               12


Q ss_pred             hHHHHHHHHHHH
Q 032830           67 NWRETALILTAI   78 (132)
Q Consensus        67 ~~r~a~~~~~~~   78 (132)
                      +|++.+++.+.+
T Consensus        90 ~~~~~yl~ia~~  101 (310)
T TIGR01272        90 KVHTPYLLLAGA  101 (310)
T ss_pred             HHHHHHHHHHHH
Confidence            488888865443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.08  E-value=2.7e-05  Score=66.18  Aligned_cols=83  Identities=13%  Similarity=0.142  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .|+++-.+.+++.+..++.+-++..++.|+++.+.-.|++.+..+ ....+||.++|.+.|.+|+.|+++..+.++++++
T Consensus       382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk-~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~g  460 (477)
T PF11700_consen  382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGK-ASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIG  460 (477)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            455555666777777778888999999999999999999999876 4569999999999999999999999887666666


Q ss_pred             HHHH
Q 032830           83 AAIW   86 (132)
Q Consensus        83 ~~~~   86 (132)
                      .+++
T Consensus       461 l~ll  464 (477)
T PF11700_consen  461 LILL  464 (477)
T ss_pred             HHHH
Confidence            5544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.08  E-value=6.1e-06  Score=66.17  Aligned_cols=64  Identities=9%  Similarity=0.079  Sum_probs=51.5

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   85 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~   85 (132)
                      +.....+.+++|+++|++++|+.++..+ +|..++|.+.|++.|+.| |++.|++.+++.++++++
T Consensus       402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~-lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~  465 (481)
T TIGR00879       402 PVPWVIVSEIFPLSLRPKGISIAVAANW-LANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIF  465 (481)
T ss_pred             CeehhhhhccCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHH
Confidence            3344566899999999999999999876 677999999999999988 999888776555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.07  E-value=2.5e-05  Score=63.38  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-hhHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-NNWRETALILTAILF   80 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-g~~r~a~~~~~~~~i   80 (132)
                      +++.++.+++.+...++..+++.+++|+++|+++.++.....+ +|...|+.+.+++.+++ | ||..|++.++..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~-~g~i~g~~l~~~l~~~~~g-w~~~f~i~a~~~l  172 (402)
T PRK11902         98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYR-LAMLVSGGLALWLADRVLG-WGNTYLLMAGLML  172 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHH-HHHHHHhHHHHHHHhcccC-HHHHHHHHHHHHH
Confidence            3343444566666667788899999999999999999998754 68888999999999975 7 9999998765443

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.07  E-value=1.5e-05  Score=64.52  Aligned_cols=70  Identities=6%  Similarity=0.083  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      +++.-++.+++.+...+.....+.+.+|+++|+++++++..... +|..++|.+.+.+.|.++ ||+.+++.
T Consensus       109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-lg~~~~~~l~~~l~~~~~-w~~~f~i~  178 (426)
T PRK12307        109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFG-IGNIIAAYFMPSFAEAYG-WRAAFFVG  178 (426)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHh-HHHHHHHHHHHHHcccCC-HHHHHHHH
Confidence            33444555656566667778889999999999999999988764 688889999999999988 99999864

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.06  E-value=1.5e-05  Score=72.68  Aligned_cols=70  Identities=7%  Similarity=-0.110  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI   74 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~   74 (132)
                      .++++.++.+.+.++..+...+++.+++|+++|+.++|+.++..+ +|.++||++.|++.+..+ |++.|..
T Consensus       110 ~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~-ig~~igp~l~g~l~~~~~-~~~~~~~  179 (1140)
T PRK06814        110 LLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTF-IAILLGTIIGGLATISGN-FVILVAL  179 (1140)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHHHHhccc-cHHHHHH
Confidence            455566677777777778888999999999999999999999876 688999999999999988 9999833

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.05  E-value=2.6e-05  Score=65.77  Aligned_cols=75  Identities=20%  Similarity=0.195  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh-hhhHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAILF   80 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~-~g~~r~a~~~~~~~~i   80 (132)
                      +.+...+.+++.+....+..+...+++|+++|+++.++.....+ +|...++.+.+++.|+ .| ||..|++.++..+
T Consensus       110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~-lG~llg~~l~~~l~~~~~G-Wr~~f~i~a~l~l  185 (491)
T PRK11010        110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYR-LAMLVSGGLALWLADRYLG-WQGMYWLMAALLI  185 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHH
Confidence            34445566677777777788899999999999999999998765 7889999999999994 67 9999998765443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.05  E-value=2.9e-05  Score=60.53  Aligned_cols=75  Identities=13%  Similarity=0.085  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ++...+.++..+...+.....+.++.| ++|+.++++.....+ +|...++++.+.+.|..| ||+.|.+.++..++.
T Consensus        95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~  169 (377)
T TIGR00890        95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYG-LGSFILSPLITSVINLEG-VPAAFIYMGIIFLLV  169 (377)
T ss_pred             HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcc-hhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence            334445555544444555566677776 579999999988764 676677777788888888 999998876444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.04  E-value=2.8e-06  Score=72.64  Aligned_cols=82  Identities=20%  Similarity=0.087  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH------hhhhHHHHHHHH
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD------RVNNWRETALIL   75 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D------~~g~~r~a~~~~   75 (132)
                      +.++++.++.+++.+..+++...++..++.+++|+.-+|++..... +|.++|.++...+..      ..| |||.|.+.
T Consensus       135 ~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~-~g~i~ggliA~g~~~~~~~~~~~g-W~~~FiI~  212 (495)
T KOG2533|consen  135 PGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASAS-LGNIFGGLIAYGVFKLNGSGGLAG-WRWLFIIE  212 (495)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcc-hhhHHHHHHHHHhhhhcCCCCcCC-ceeehhHH
Confidence            4577888999999999999999999999999999999999998764 677888887765432      235 99999998


Q ss_pred             HHHHHHHHHH
Q 032830           76 TAILFPAAAI   85 (132)
Q Consensus        76 ~~~~iv~~~~   85 (132)
                      +++.++.+++
T Consensus       213 G~i~~~~gi~  222 (495)
T KOG2533|consen  213 GVITLVLGIV  222 (495)
T ss_pred             HHHHHHHHhe
Confidence            7665555443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.02  E-value=1.7e-05  Score=69.35  Aligned_cols=61  Identities=15%  Similarity=-0.023  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV   65 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~   65 (132)
                      +++.-++.+++.+...+.....+.|.+|+++|+.++|++.... .+|+++||++.|++.+.+
T Consensus       175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~-~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA-VFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH-HhhhHHHHHHHHHHHhcc
Confidence            3445556666666666667789999999999999999999885 589999999999998753

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.99  E-value=8.7e-06  Score=67.60  Aligned_cols=77  Identities=9%  Similarity=0.002  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV--NNWRETALILTAILF   80 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~--g~~r~a~~~~~~~~i   80 (132)
                      .++++.++.+++.+...++...++.+++|+++|++++|++....+ +|.++++++..++.+.+  ++||..|.+.++..+
T Consensus       124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~-lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~  202 (467)
T PRK09556        124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN-LGGAGAGGVALWGANYFFDGHVIGMFIFPSIIAL  202 (467)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccc-hhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHH
Confidence            344455566777777778888899999999999999999988765 68888998888887764  238888776654443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.98  E-value=1.7e-05  Score=62.86  Aligned_cols=64  Identities=13%  Similarity=0.123  Sum_probs=51.4

Q ss_pred             HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830           11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus        11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      .+++.....+.....+++.+|+++|++++|+.+.+.+ +|..+||++.|++.|+.|+|+.++...
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGN-LGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHH-HHHHHHHHHHHHHHHhccccchhHHhh
Confidence            3344444555667788999999999999999988875 677999999999999999787777654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.97  E-value=2.7e-05  Score=64.02  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=47.5

Q ss_pred             HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830           24 FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA   84 (132)
Q Consensus        24 ~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~   84 (132)
                      ....+.+|+++|++++|+.+...+..|...||.+.|++.|+.| |.+++.++....+++.+
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~  427 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVI  427 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence            3566889999999999999887665456789999999999999 99998876554444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00901 2A0125 AmpG-related permease

Probab=97.97  E-value=5e-05  Score=60.17  Aligned_cols=70  Identities=13%  Similarity=0.071  Sum_probs=55.8

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh-------HHHHHHHHHHHHH
Q 032830           10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN-------WRETALILTAILF   80 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~-------~r~a~~~~~~~~i   80 (132)
                      +.+++.+....+..+.+.+++|+++|+.+.++.....+ +|..++|.+.+++.+.++.       ||+.|.+.++..+
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l  168 (356)
T TIGR00901        92 LIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYR-AGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLIL  168 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHH-HHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHH
Confidence            44455555667778889999999999999999988875 6889999999999988763       9999987654433

>PRK11043 putative transporter; Provisional

Probab=97.97  E-value=3.9e-05  Score=61.87  Aligned_cols=62  Identities=11%  Similarity=0.035  Sum_probs=48.7

Q ss_pred             chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830           18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus        18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      ........+.+.+|+++++.+.+....... +|...+|.+.|++.|++| ||+.+++..+..++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~  172 (401)
T PRK11043        111 AAVIWQALVIDRYPAQKANRVFATIMPLVA-LSPALAPLLGAWLLNHFG-WQAIFATLFAITLL  172 (401)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence            334455678899999999999888776654 577899999999999999 99999887544433

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.94  E-value=8.3e-05  Score=60.26  Aligned_cols=61  Identities=10%  Similarity=0.107  Sum_probs=47.8

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      +......++..|+ +|++++++++...+ +|..+||.+.|++.|++| |++.+.+..+..+++.
T Consensus       324 ~~~~~~~~~~~p~-~~g~~~~~~~~~~~-lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~  384 (393)
T PRK15011        324 GIGMLYFQDLMPG-QAGSATTLYTNTSR-VGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATL  384 (393)
T ss_pred             HHHHHHHHHhCCC-CcchHHHHHHHHHH-HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH
Confidence            4444566788875 59999999988765 688999999999999998 9999987655544443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.94  E-value=5.8e-06  Score=69.56  Aligned_cols=85  Identities=12%  Similarity=0.169  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      ++-.++++..+|+.+.++--+.....+++|++--|+|+|+..++..+.|.+.+....|+++|.+| |...|.+..+..++
T Consensus       347 ~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l  425 (448)
T COG2271         347 LLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALL  425 (448)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHH
Confidence            35566778888888888877888889999999999999999999988799999999999999999 99999987666666


Q ss_pred             HHHHHH
Q 032830           82 AAAIWF   87 (132)
Q Consensus        82 ~~~~~~   87 (132)
                      +.+++.
T Consensus       426 ~~lll~  431 (448)
T COG2271         426 AILLLL  431 (448)
T ss_pred             HHHHHH
Confidence            655444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.94  E-value=3.5e-05  Score=61.98  Aligned_cols=66  Identities=8%  Similarity=-0.118  Sum_probs=51.5

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      ++.+++.+...+.....+.+.+|+++|++++++.....+ +|..+||.+.|++.+++| |++.+.+..
T Consensus       120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~g-~~~~~~~~~  185 (399)
T PRK05122        120 LLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATY-GALAIGAPLGVLLYHWGG-LAGLGLLIM  185 (399)
T ss_pred             HHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhh-HHHHHHHHHHHHHHHccc-HHHHHHHHH
Confidence            344444454555566677899999999999999877754 688899999999999999 998876643

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.92  E-value=3.4e-05  Score=63.02  Aligned_cols=49  Identities=14%  Similarity=0.055  Sum_probs=41.2

Q ss_pred             cchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830           17 ATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus        17 ~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      ...++....+.+.+|+++|+++.|++++... +|..+||.+.|++.|+.+
T Consensus       313 ~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        313 IAEPARETLSASLADARARGSYMGFSRLGLA-LGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHHccHHHHHHhcCCcccchhhhhHHHHHHH-HHHHhcccchHHHHHHHh
Confidence            3345566788899999999999999998865 688999999999999864

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.92  E-value=6.2e-05  Score=60.55  Aligned_cols=69  Identities=13%  Similarity=0.089  Sum_probs=51.8

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL   79 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~   79 (132)
                      ++.+++.....+.......+.+++++++.+.+++.+.. .+|...||.+.|++.|+.| ||+.+++..+..
T Consensus       104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~  172 (394)
T PRK11652        104 AIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGI-LVSPLLAPLIGGLLTTLFG-WRACYLFLLLLG  172 (394)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence            33444333333444566778889999999999988876 5777899999999999989 999998865433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.92  E-value=0.0001  Score=59.87  Aligned_cols=72  Identities=14%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      .+++.-++.++..+...+....++.+++| ++|+++++++....+ +|..+|+.+.+++.++.++||+.+.+..
T Consensus        99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~~g~~~~~~l~~~~~~w~~~~~~~~  170 (393)
T PRK09705         99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALM-GGGGLGAAITPWLVQHSETWYQTLAWWA  170 (393)
T ss_pred             HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34445556666666666667778888886 789999999988764 6789999999999998733999987654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.92  E-value=2.3e-05  Score=61.22  Aligned_cols=60  Identities=15%  Similarity=0.187  Sum_probs=47.3

Q ss_pred             HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHH
Q 032830           11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETA   72 (132)
Q Consensus        11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~   72 (132)
                      .+++.............+.+|+++|+++.|++++..+ +|...+|.+.|++.|++| |+++|
T Consensus       320 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g-~~~~f  379 (379)
T TIGR00881       320 LGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAY-LGGILAGLPLGYLADGFG-WAGAF  379 (379)
T ss_pred             HHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh-hhhhhhhhhHHHHHHhhc-ccccC
Confidence            3333334444455678899999999999999998875 677899999999999998 88754

>PRK12382 putative transporter; Provisional

Probab=97.90  E-value=5.7e-05  Score=60.70  Aligned_cols=62  Identities=15%  Similarity=-0.016  Sum_probs=47.7

Q ss_pred             HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830           11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI   74 (132)
Q Consensus        11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~   74 (132)
                      .+...+...+.....+.+.+|+++|+++++++....+ +|..+||++.|++.+++| |++.+.+
T Consensus       122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~-~g~~~g~~~~~~l~~~~g-~~~~~~~  183 (392)
T PRK12382        122 LGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMY-GALAAGAPLGLLLHSHFG-FAALALT  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHH-HHHHHHHHHHHHHHhccC-hHHHHHH
Confidence            3333333344455677899999999999999888754 678899999999999999 9876554

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.90  E-value=0.00013  Score=59.21  Aligned_cols=61  Identities=10%  Similarity=0.036  Sum_probs=42.4

Q ss_pred             hHHHHHhHhhcCCCCch--HHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           20 GPVNFICLHCVKPSIRP--LSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~--~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +....++.+..+++.|.  ...++.....+ +|..+||++.|++.|++| ||+.|.+.++..++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lg~~~g~~i~~~l~~~~g-w~~~f~~~~~~~~~~  186 (393)
T PRK15011        124 PQMFALAREHADKTGREAVMFSSFLRAQVS-LAWVIGPPLAYALAMGFS-FTVMYLSAAVAFIVC  186 (393)
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHH-HHHHHhhHHHHHHHHhcC-hHHHHHHHHHHHHHH
Confidence            33445556666665453  33466666654 688999999999999999 999998875444443

>PRK09952 shikimate transporter; Provisional

Probab=97.90  E-value=7.4e-05  Score=61.72  Aligned_cols=72  Identities=13%  Similarity=0.057  Sum_probs=52.4

Q ss_pred             HHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Q 032830           12 ELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-NNWRETALILTAILFPAA   83 (132)
Q Consensus        12 ~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-g~~r~a~~~~~~~~iv~~   83 (132)
                      ++......+..+..+.+.+|++.|+++.++.....+.+|...+|.+.|++.|.. ++|...+....+..+++.
T Consensus       354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~  426 (438)
T PRK09952        354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA  426 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            333344455677888999999999999998665555567789999999999976 348777766554444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.89  E-value=6.5e-05  Score=60.75  Aligned_cols=71  Identities=7%  Similarity=-0.031  Sum_probs=53.8

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      ++.+.......+.....+.+.+|+++|..+.++...... +|...||.+.+++.|..+ ||+++++.++..++
T Consensus       109 ~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~~~  179 (406)
T PRK15402        109 FLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL-LAPLLGPLVGAALIHVLP-WRGMFVLFAALAAL  179 (406)
T ss_pred             HHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence            333444444445667788899999999999998877654 677899999999999888 99999876544443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.89  E-value=0.00011  Score=61.67  Aligned_cols=59  Identities=10%  Similarity=-0.106  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ   62 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~   62 (132)
                      .++++-++.+++.+...++....+.+++|+++|++++++..... .+|...|+.+.+++.
T Consensus       117 ~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~-~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       117 TLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQ-GFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34556667777777778888899999999999999999998876 477788888877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10054 putative transporter; Provisional

Probab=97.88  E-value=7.9e-05  Score=60.77  Aligned_cols=61  Identities=7%  Similarity=-0.025  Sum_probs=48.6

Q ss_pred             hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .+.......|.+|+++|+++.++.....+ +|...||++.|++.+ .| |++.|.+..+..+++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-lg~~igp~l~~~l~~-~g-~~~~f~~~~~~~~i~  174 (395)
T PRK10054        114 STVLKAWFADNLSSTSKTKIFSLNYTMLN-IGWTVGPPLGTLLVM-QS-INLPFWLAAICSAFP  174 (395)
T ss_pred             HHHHHHHHHHhcCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hc-cCcHHHHHHHHHHHH
Confidence            34455677899999999999999998876 688999999999886 67 999998765444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.88  E-value=7.2e-05  Score=58.94  Aligned_cols=55  Identities=7%  Similarity=0.030  Sum_probs=40.5

Q ss_pred             chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh----------hhhHHHHHHH
Q 032830           18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR----------VNNWRETALI   74 (132)
Q Consensus        18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~----------~g~~r~a~~~   74 (132)
                      ...+....+.+++|+++|+.+.+++....+ +|...++.+.+.+.+.          .+ ||+.+++
T Consensus       107 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~i~~~l~~~~~~~~~~~~~~~-w~~~~~~  171 (366)
T TIGR00886       107 SFASCMPWISFFFPKKIQGTALGLAAGWGN-MGGGVAQFVMPPIIGSLIFGAGLPAHLA-WGWAFVI  171 (366)
T ss_pred             hhHhHHHHHHHhcCHhhhhHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhccccccccc-ccchhHH
Confidence            345677888999999999999999886654 5656666666655543          25 9999854

>PRK03699 putative transporter; Provisional

Probab=97.87  E-value=9.6e-05  Score=59.81  Aligned_cols=74  Identities=12%  Similarity=0.101  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh-hhhHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAIL   79 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~-~g~~r~a~~~~~~~~   79 (132)
                      +++..++.+++.+...+.....+.+.+|+++|+.++++...... +|...+|.+.|++.+. .| ||+.|.+.++..
T Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~g-w~~~f~~~~~~~  172 (394)
T PRK03699         98 FSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFS-MAGMIFPIIAAYLLARSIE-WYWVYACIGLVY  172 (394)
T ss_pred             HHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence            34444555666666666777888999999999999998876654 5668899999988764 56 999998765443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.86  E-value=7.2e-05  Score=60.79  Aligned_cols=66  Identities=12%  Similarity=-0.054  Sum_probs=48.3

Q ss_pred             hcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           16 FATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        16 ~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ....+.......+..+ +++|+++.++.+...+ ++...||++.|++.|++|+++..+.+..+.++++
T Consensus       307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (393)
T PRK09705        307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGF-IIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL  373 (393)
T ss_pred             cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            3333444445556664 5789999999888865 4568899999999999988888888776554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.86  E-value=0.0001  Score=58.15  Aligned_cols=72  Identities=11%  Similarity=0.080  Sum_probs=53.2

Q ss_pred             HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830           11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   85 (132)
Q Consensus        11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~   85 (132)
                      .+++.....+.....+++..|+ ++++++++++...+ +|...||.+.|++.|..| |+..+.+..+..+++.++
T Consensus       298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~  369 (375)
T TIGR00899       298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGR-VGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFC  369 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Confidence            3444444445555677787775 56799999998876 788999999999999999 999998876555555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.86  E-value=4.3e-05  Score=61.58  Aligned_cols=66  Identities=17%  Similarity=0.019  Sum_probs=47.5

Q ss_pred             HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHH
Q 032830            8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA   77 (132)
Q Consensus         8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~   77 (132)
                      .++.+++.....+...++..++  .++|+.+.+......+ +|..+||++.|++.|++| ||..|++.++
T Consensus       101 ~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~-lg~~igp~lgg~l~~~~g-~~~~f~~~~~  166 (382)
T PRK11128        101 IGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGS-IAFVIGSALTGKLVSWFG-EQAILWILTA  166 (382)
T ss_pred             HHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHH-HHHHHHHHHHHHHHHHcC-hhHHHHHHHH
Confidence            3334444455555555666665  3457777777777654 789999999999999999 9999887653

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.85  E-value=0.00013  Score=61.04  Aligned_cols=71  Identities=14%  Similarity=0.037  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH--------HhhhhHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ--------DRVNNWRETALIL   75 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~--------D~~g~~r~a~~~~   75 (132)
                      ++++-++.++..+...++....+.+++|+++|+++.++..... .+|..+|+.+...+.        +.+| ||+.|++.
T Consensus       121 l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~-~~G~~lg~~~~~~~~~~~~~~~~~~~g-WR~~f~i~  198 (490)
T PRK10642        121 LLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGS-IAGFVLGAGVVVLISTIVGEANFLDWG-WRIPFFIA  198 (490)
T ss_pred             HHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHhcCcc-HHHHHHHH
Confidence            3444556677777778888899999999999999999887664 456666665554443        2567 99999885


Q ss_pred             H
Q 032830           76 T   76 (132)
Q Consensus        76 ~   76 (132)
                      .
T Consensus       199 ~  199 (490)
T PRK10642        199 L  199 (490)
T ss_pred             H
Confidence            4

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.84  E-value=0.00013  Score=57.53  Aligned_cols=64  Identities=11%  Similarity=0.016  Sum_probs=45.8

Q ss_pred             cchhHHHHHhHhhcCCCCchHH--HHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           17 ATQGPVNFICLHCVKPSIRPLS--MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        17 ~~~~~~~~ii~~~vp~~~R~~a--~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ...+....+..+..|++.|+.+  .++.....+ +|..+||++.|++.|.+| ||+.|.+.++..++.
T Consensus       103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ig~~~~~~l~~~~~-~~~~f~~~~~~~~~~  168 (375)
T TIGR00899       103 TANPQLFALAREHADRTGREAVMFSSVMRAQIS-LAWVIGPPLAFWLALGFG-FTVMFLTAALAFVLC  168 (375)
T ss_pred             hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHh-HHHHHhhhHHHHHHHhcc-cHHHHHHHHHHHHHH
Confidence            3344455666777787777754  466555544 688999999999999999 999999876544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15075 citrate-proton symporter; Provisional

Probab=97.84  E-value=9.5e-05  Score=60.77  Aligned_cols=55  Identities=7%  Similarity=-0.018  Sum_probs=41.7

Q ss_pred             HHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHH
Q 032830           14 LVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWR   69 (132)
Q Consensus        14 ~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r   69 (132)
                      +.....+..+..+.+.+|+++|+++.++.....+.++..++|.+.|++.|++| ++
T Consensus       344 ~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g-~~  398 (434)
T PRK15075        344 LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG-DK  398 (434)
T ss_pred             HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC-Cc
Confidence            33333444566788999999999999986555555555789999999999988 44

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.81  E-value=0.00015  Score=62.93  Aligned_cols=87  Identities=15%  Similarity=0.117  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   85 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~   85 (132)
                      .+-.+-+...+..+..+.+-+.+..||+.|+++-++.....+-+|-.+|.+|+|.+..+++ -|..|.+.++.+++..+.
T Consensus       464 Pieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  464 PIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHH
Confidence            3445566666777777778888999999999999999999888999999999999999999 999999988777777666


Q ss_pred             HHHHHHHh
Q 032830           86 WFIGIFLH   93 (132)
Q Consensus        86 ~~~~~~~~   93 (132)
                      +...-++.
T Consensus       543 ~~~iq~~l  550 (618)
T KOG3762|consen  543 FISIQLLL  550 (618)
T ss_pred             HHHhhhhh
Confidence            65544444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.80  E-value=1.7e-05  Score=66.45  Aligned_cols=63  Identities=6%  Similarity=-0.090  Sum_probs=39.8

Q ss_pred             HHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 032830           21 PVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV--NNWRETALILTAILFPAAAIWFIG   89 (132)
Q Consensus        21 ~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~--g~~r~a~~~~~~~~iv~~~~~~~~   89 (132)
                      ..++++.+. +++.+|.+.|+.+.     +..+|+++.+++.|..  ++|+.+|.+.++..++++++.+..
T Consensus       368 ~~~~~~~~~-~~~~~g~~~g~~~~-----~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        368 ATFGIVPFV-SRRSLGVISGLTGA-----GGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhcccCccc-Chhhchhhhhhhhc-----cccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            333444443 45689999888643     3355666677766632  249999998877777776655443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.80  E-value=2.5e-05  Score=66.89  Aligned_cols=68  Identities=15%  Similarity=0.165  Sum_probs=60.0

Q ss_pred             HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032830           22 VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGI   90 (132)
Q Consensus        22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~   90 (132)
                      ...++.|.++.++-+.+.|+..++.. ++...||++.|++.|..|+|..+|+.+++..+++++++++..
T Consensus       409 ~~~i~~~~~g~~~l~~a~Gl~l~~~g-i~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  409 TPVILVDLVGLEKLSNAYGLLLLFQG-IGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHcChhhcchHHHHHHHHhH-HHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            33588899999999999999999875 667899999999999999999999999988888888777666

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.78  E-value=0.00019  Score=57.77  Aligned_cols=68  Identities=16%  Similarity=0.158  Sum_probs=52.4

Q ss_pred             HHHhcchhHHHHHhHhhcCC-CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           13 LLVFATQGPVNFICLHCVKP-SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        13 ~~~~~~~~~~~~ii~~~vp~-~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +......+..+..+++..++ +.+++..++.+...+ +|..+||.+.|++.|++| ++..|...++..+++
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       315 LITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRD-LGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHH
Confidence            33455555666676777776 889999999998875 688999999999999999 998888765544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.76  E-value=0.00024  Score=59.53  Aligned_cols=62  Identities=24%  Similarity=0.177  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      ....+.+.+.......++..+++.|.+|+++|+++.++...+. ++|.+.+.++.|.+.|.+.
T Consensus        92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Ml-i~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVML-IVGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHH-HHHHHHHHHHHHHHccccC
Confidence            3445666677777778899999999999999999999998876 7899999999999999876

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.76  E-value=0.00013  Score=65.28  Aligned_cols=73  Identities=12%  Similarity=0.069  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +.++.+++....++.....+.+++|.+.|++++|+.+.+.+ +|.++||+++|++.+. + ....|.+.+++++++
T Consensus       654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~r-lGaiigp~i~g~L~~~-~-~~~pf~i~a~~lll~  726 (742)
T TIGR01299       654 LLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCK-AAAVLGILIFGSFVGI-T-KAAPILFASAALACG  726 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHH
Confidence            34455555666667777889999999999999999999977 6889999999998875 3 444555544444443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.76  E-value=0.00011  Score=57.74  Aligned_cols=67  Identities=15%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH--------hhhhHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD--------RVNNWRETALILTA   77 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D--------~~g~~r~a~~~~~~   77 (132)
                      ++.++......+.....+.+.+|+++|+++.++...... +|..++|.+.+.+.+        .++ ||+.+.+..+
T Consensus       104 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~G~~i~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~  178 (394)
T TIGR00883       104 LIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAP-VGLLLAALTVLLLSYLLGDDALLEWG-WRIPFLVSAV  178 (394)
T ss_pred             HHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHhhccc-hHHHHHHHHH
Confidence            444444455556677889999999999999999988764 788888888776653        456 9998876543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.76  E-value=0.00013  Score=60.01  Aligned_cols=71  Identities=14%  Similarity=0.094  Sum_probs=52.4

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH--------HhhhhHHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ--------DRVNNWRETALILTAILF   80 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~--------D~~g~~r~a~~~~~~~~i   80 (132)
                      ++.++..+...+...+.+.+++|+++|++++++..... .+|..+++.+.+.+.        +.+| ||+.|.+..+..+
T Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~  205 (479)
T PRK10077        128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI-IFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPAL  205 (479)
T ss_pred             HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHH
Confidence            45555556666778889999999999999999998875 477777877665543        3457 9999987654433


Q ss_pred             H
Q 032830           81 P   81 (132)
Q Consensus        81 v   81 (132)
                      +
T Consensus       206 ~  206 (479)
T PRK10077        206 L  206 (479)
T ss_pred             H
Confidence            3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.75  E-value=0.00017  Score=59.40  Aligned_cols=75  Identities=13%  Similarity=0.039  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH--------------------
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD--------------------   63 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D--------------------   63 (132)
                      +++..++.++..+...++.+..+.++.|+++|++.+++.+...+ +|..+||.+.+.+..                    
T Consensus        97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  175 (410)
T TIGR00885        97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNP-FGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELS  175 (410)
T ss_pred             HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHH
Confidence            34445566666677777788888899999999999999988865 688899999887742                    


Q ss_pred             ------hhhhHHHHHHHHHHHHH
Q 032830           64 ------RVNNWRETALILTAILF   80 (132)
Q Consensus        64 ------~~g~~r~a~~~~~~~~i   80 (132)
                            ..+ ||+.|.+.+++.+
T Consensus       176 ~~~~~~~~~-w~~~fl~~a~~~~  197 (410)
T TIGR00885       176 AIKHSDLAS-VQTPYMIIGAVVL  197 (410)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHH
Confidence                  234 9999987765433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.74  E-value=9.9e-05  Score=59.74  Aligned_cols=53  Identities=9%  Similarity=-0.066  Sum_probs=43.3

Q ss_pred             HHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830           21 PVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus        21 ~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      .....+.+.+|++.|++++|+...+.+ +|...||++.|++.|++| +.....+.
T Consensus       341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~-~~~~~gp~~~g~l~~~~g-~~~~~~~~  393 (426)
T PRK12307        341 LVPKFLYDYFPLEVRGLGTGLIYNLAA-TSGTFNSMAATWLGITMG-LGAALTFI  393 (426)
T ss_pred             HHHHHHHHhCcHHHHhhhhhHHHHHHh-HHHHHHHHHHHHHHHccc-HHHHHHHH
Confidence            344677899999999999999888776 567899999999999998 76655443

>PRK15075 citrate-proton symporter; Provisional

Probab=97.73  E-value=0.00018  Score=59.12  Aligned_cols=67  Identities=16%  Similarity=0.075  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH--------HhhhhHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ--------DRVNNWRETALIL   75 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~--------D~~g~~r~a~~~~   75 (132)
                      +-++.++..+...+.....+.+++|+++|+++++++....+ +|...||.+.+.+.        +.+| ||+.|++.
T Consensus       123 ~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~-~g~~~g~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~  197 (434)
T PRK15075        123 GRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ-VAVVFAALLGYLLNQWLSPAQMAEWG-WRIPFLIG  197 (434)
T ss_pred             HHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhccc-hHHHHHHH
Confidence            33455555555566677889999999999999999887765 56667777766653        5667 99999864

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.73  E-value=6.2e-05  Score=62.11  Aligned_cols=79  Identities=14%  Similarity=0.172  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh--hhHHHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV--NNWRETALILTAILFPA   82 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~--g~~r~a~~~~~~~~iv~   82 (132)
                      ++++++.+++.....+.......+..|+ .+|.+.++.++... +|+.++|.+.|++.|..  ++|+.+|.+..+..+++
T Consensus       365 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~-l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~  442 (465)
T TIGR00894       365 IIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGF-IGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILC  442 (465)
T ss_pred             HHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHH-HHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHH
Confidence            3344455544444444455556677765 89999999999875 67899999999999864  44888888876666555


Q ss_pred             HHH
Q 032830           83 AAI   85 (132)
Q Consensus        83 ~~~   85 (132)
                      .++
T Consensus       443 ~i~  445 (465)
T TIGR00894       443 VIF  445 (465)
T ss_pred             HHH
Confidence            444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.73  E-value=0.00018  Score=57.88  Aligned_cols=61  Identities=8%  Similarity=0.000  Sum_probs=47.3

Q ss_pred             hcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830           16 FATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI   78 (132)
Q Consensus        16 ~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~   78 (132)
                      +...+.....+.+.+|+++++.+.+.+++..+ +|...||.+.|++.|++| +++.|.+.+..
T Consensus       300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~igp~~~G~l~~~~g-~~~~f~~~~~~  360 (381)
T PRK03633        300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYT-VGSLLGPSFTAMLMQNYS-DNLLFIMIASV  360 (381)
T ss_pred             HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence            33445556667788888888888888776654 788999999999999999 99988876433

>PRK10504 putative transporter; Provisional

Probab=97.71  E-value=0.00035  Score=57.55  Aligned_cols=56  Identities=7%  Similarity=0.118  Sum_probs=46.1

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830           10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      +.+++.....++.+.++.+.+|+++++.+.|+.++..+ +|..+||.+.|.+.|..|
T Consensus       362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQ-LSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence            33444555566777888899999999999999998875 788999999999999876

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.71  E-value=0.00038  Score=58.30  Aligned_cols=70  Identities=10%  Similarity=0.034  Sum_probs=45.8

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH----Hh-----hhhHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ----DR-----VNNWRETALILTAIL   79 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~----D~-----~g~~r~a~~~~~~~~   79 (132)
                      ++.+++... ..+....+.+++|+++|++++|+.+...+ +|..+++.+.+.+.    +.     .| ||+.|.+.++..
T Consensus       132 ~l~G~~~~~-~~~~~~~i~~~~~~~~rg~a~g~~~~~~~-~g~~~~~~~~~~i~~~~~~~~~~~~~g-Wr~~f~i~g~l~  208 (476)
T PLN00028        132 FFIGFSLAT-FVSCQYWMSTMFNGKIVGTANGIAAGWGN-LGGGVTQLLMPLVFPLIKDAGAPSFTA-WRIAFFVPGLLH  208 (476)
T ss_pred             HHHHHHHHh-hHHHHHHHHHhcChhheeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcchhh-hHHHHHHHHHHH
Confidence            344444433 33455567899999999999999876654 45566655555443    32     46 999999876544


Q ss_pred             HH
Q 032830           80 FP   81 (132)
Q Consensus        80 iv   81 (132)
                      ++
T Consensus       209 l~  210 (476)
T PLN00028        209 II  210 (476)
T ss_pred             HH
Confidence            43

>TIGR00897 2A0118 polyol permease family

Probab=97.69  E-value=0.00044  Score=56.16  Aligned_cols=61  Identities=11%  Similarity=0.129  Sum_probs=46.9

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      .+....+.+. +|++|++++|+.++..+ +|..+||++.|++.|.+| +...+++..+..++++
T Consensus       334 ~~~~~~~~~~-~~~~~g~~~g~~~~~~~-lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~  394 (402)
T TIGR00897       334 VPLAAVFPTL-APKHKGAAMSVLNLSAG-LSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSA  394 (402)
T ss_pred             HHHHHHHHhh-CcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHH
Confidence            3444555554 55689999999998875 677899999999999999 9888887765554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.69  E-value=0.00014  Score=59.82  Aligned_cols=61  Identities=13%  Similarity=-0.043  Sum_probs=43.7

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHH------HHHHhhhhHHHHHHHHHHHHHHH
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVG------VLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G------~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +..+..+.+.+|+++|++++|+.....+ +|...+|.+++      ++.|.++ |++.+++.+..++++
T Consensus       383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  449 (479)
T PRK10077        383 PVCWVLLSEIFPNAIRGKALAIAVAAQW-IANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLA  449 (479)
T ss_pred             chhHHHhHhhCChhHHHHHHHHHHHHHH-HHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHHHH
Confidence            4456888999999999999999888765 45566655444      5557778 888887765444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.68  E-value=0.00032  Score=57.63  Aligned_cols=72  Identities=17%  Similarity=0.089  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH--------HhhhhHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ--------DRVNNWRETALIL   75 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~--------D~~g~~r~a~~~~   75 (132)
                      ++++-++.++..+...+.....+.+++|+++|+++.++...... .|...++.+.+.+.        +.+| ||+.|.+.
T Consensus       127 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~F~i~  204 (432)
T PRK10406        127 LLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLI-GGQLLALLVVVVLQQTLEDAELREWG-WRIPFALG  204 (432)
T ss_pred             HHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhccc-hHHHHHHH
Confidence            33444466666666777788899999999999999998877653 56677776655443        2467 99999875


Q ss_pred             HH
Q 032830           76 TA   77 (132)
Q Consensus        76 ~~   77 (132)
                      .+
T Consensus       205 ~~  206 (432)
T PRK10406        205 AV  206 (432)
T ss_pred             HH
Confidence            43

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.68  E-value=0.00022  Score=58.13  Aligned_cols=66  Identities=12%  Similarity=-0.057  Sum_probs=53.0

Q ss_pred             HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830            8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus         8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      .++.+++.+...+...+++.|++|+++|+++.|+..... .+|...||.++|++.|. . |+..+.+..
T Consensus        95 r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~-~~~~~~Gp~lgG~l~~~-~-~~~~~~i~~  160 (393)
T PRK11195         95 YGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGST-IAAILLGTVLGGALADP-H-AEAALAVCA  160 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-H-HHHHHHHHH
Confidence            345566667777778899999999999999999998875 47889999999999995 4 666665543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.68  E-value=0.0002  Score=65.06  Aligned_cols=61  Identities=8%  Similarity=-0.132  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR   64 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~   64 (132)
                      .++++.++.+++.+...+...+++.+++|+++|++++|+...... +|.++||+++|++.+.
T Consensus       105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTI-VAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            344455566666677777788899999999999999999999875 7889999999999987

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.67  E-value=3.7e-05  Score=64.39  Aligned_cols=55  Identities=16%  Similarity=0.219  Sum_probs=45.1

Q ss_pred             cchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH---hhhhHHHHH
Q 032830           17 ATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD---RVNNWRETA   72 (132)
Q Consensus        17 ~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D---~~g~~r~a~   72 (132)
                      ...+++-+++.|++++++|+.+++....... +|.++||+|+|++..   ..|++.+++
T Consensus       136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~-lGfilGPmIGgyla~f~~~~g~~p~al  193 (451)
T KOG2615|consen  136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFG-LGFILGPMIGGYLAQFSSISGSYPFAL  193 (451)
T ss_pred             CchHHHHHHHHhhcChhhccceeeeeehhhh-cchhhcchhhhHHHhhHhhhccCchHH
Confidence            3456778999999999999999999999875 899999999999987   455444444

>TIGR00897 2A0118 polyol permease family

Probab=97.67  E-value=0.00012  Score=59.49  Aligned_cols=53  Identities=9%  Similarity=-0.163  Sum_probs=42.4

Q ss_pred             HHHHHhHhhcCCCCchHHHHHHHHHHHhhcc-cchHHHHHHHHHhhhhHHHHHHHH
Q 032830           21 PVNFICLHCVKPSIRPLSMAISTVSIHIFGD-VPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus        21 ~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~-~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      +....+.+.+|+++|++++|+.....+ +|. ..||++.|++.|.+| |+..++..
T Consensus       125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~g~~~~~~l~~~~g-~~~~~~~~  178 (402)
T TIGR00897       125 SFLVWVVYNTKQDNLSSAVGWFWAVYS-IGIGVFGSYYSSYAIPAFG-EMNTLWSA  178 (402)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccc-hHHHHHHH
Confidence            344567788999999999999998865 564 579999999999988 77666544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.67  E-value=8.1e-05  Score=57.91  Aligned_cols=62  Identities=16%  Similarity=0.035  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      +++..++.+++.....+.....+++.+|+++|+++.|+++...+ +|..+||.+.|++.|++|
T Consensus       304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       304 FLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSH-AAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            34455566666666667778899999999999999999999876 577899999999999864

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.66  E-value=0.00011  Score=59.44  Aligned_cols=62  Identities=16%  Similarity=-0.045  Sum_probs=45.2

Q ss_pred             HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830           11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus        11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      .+.+.....+...++..+ . +++|+++.|......+ +|.+.||++.|++.|++| ||+.|.+..
T Consensus       104 ~~~~~~~~~p~~~al~~~-~-~~~~~~~~g~~~~~~s-lG~~~g~~l~g~l~~~~g-~~~~f~~~~  165 (382)
T TIGR00902       104 FALFFSAGMPIGDALANT-W-QKQFGLDYGKVRLIGS-AAFIIGSALFGGLIGMFD-EQNILAILT  165 (382)
T ss_pred             HHHHHccchhHHHHHHHH-H-HHHcCCCccHHHHHHH-HHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence            333333344444445443 3 5678999998888765 789999999999999999 999987754

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.64  E-value=5.6e-05  Score=61.96  Aligned_cols=53  Identities=17%  Similarity=0.284  Sum_probs=45.1

Q ss_pred             HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHH
Q 032830           24 FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA   77 (132)
Q Consensus        24 ~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~   77 (132)
                      ....+.+|+++|+.++|+.+...+ +|.+.+|.+.|.+.|+.|+|++++.+..+
T Consensus       356 ~~~~~~~~~~~~~~a~g~~~~~~~-~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       356 TTPDQSISLQARAIAIAVINATGN-IGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             hhcccccchHHHHHHHHHHHHhhh-hhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            344567899999999999999876 68899999999999999779999987654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.63  E-value=0.00042  Score=56.93  Aligned_cols=63  Identities=10%  Similarity=0.013  Sum_probs=42.9

Q ss_pred             hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .+..+..+.+.+|++.|++++|+.+...+.+.....|.+.+++ |..|+|...+.+..+..+++
T Consensus       354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~  416 (432)
T PRK10406        354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVA  416 (432)
T ss_pred             HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHH
Confidence            3445667889999999999999988776654334588888855 66675655555443333333

>PRK09952 shikimate transporter; Provisional

Probab=97.61  E-value=0.00048  Score=56.89  Aligned_cols=70  Identities=17%  Similarity=0.172  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH--------hhhhHHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD--------RVNNWRETALILTA   77 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D--------~~g~~r~a~~~~~~   77 (132)
                      ++-++.++..+..++.....+.+++|+++|+...+...... .+|..+++.+.+++..        .+| ||+.|.+..+
T Consensus       130 ~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~-~~G~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~  207 (438)
T PRK09952        130 TLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGY-GVGLLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIV  207 (438)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHH
Confidence            34445666666777777889999999999999999887765 3677777776666653        457 9999987643

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.61  E-value=0.00024  Score=57.61  Aligned_cols=61  Identities=18%  Similarity=0.185  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      +++.++.++......+..++++.|+++       ++.+|.+.|++++..+ +|..+||.+.|++.|..|
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       315 LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRK-LGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            344455555556666677788888875       5678999999999875 688999999999999865

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.58  E-value=0.00032  Score=59.81  Aligned_cols=93  Identities=14%  Similarity=0.053  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCc--hHHHHHHHHHHHhhcccchHHHHHHH--HHhh------------hhH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIR--PLSMAISTVSIHIFGDVPSSPLVGVL--QDRV------------NNW   68 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R--~~a~gi~~l~~~llG~~~gP~i~G~l--~D~~------------g~~   68 (132)
                      ++.+.+..+......+|..+++.|.+|+++|  +.+.++.+...+ +|..+|+.+.|++  .+.+            .+.
T Consensus       118 ~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~-lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~  196 (477)
T TIGR01301       118 VVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA-IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANL  196 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHhcccccccccccccchH
Confidence            3344444556667778899999999998765  579998888875 6889999988865  2322            137


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 032830           69 RETALILTAILFPAAAIWFIGIFLHSVDKFSED  101 (132)
Q Consensus        69 r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~  101 (132)
                      +++|++..+.++++.++   ..+..+++.+.++
T Consensus       197 ~~~F~i~a~~l~i~~l~---t~~~v~E~~~~~~  226 (477)
T TIGR01301       197 KSCFLIDIILLAILTYI---ALSAVKENPLIGS  226 (477)
T ss_pred             HHHHHHHHHHHHHHHHH---HeeeeeccCCCcc
Confidence            88888765444443332   2233355554333

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00898 2A0119 cation transport protein

Probab=97.56  E-value=0.00036  Score=57.98  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      .+++..++.+++.+...+....++.+++|+++|+.+.++..+.. .+|.+.+|.+.+.+.|    ||+.+++.++..++
T Consensus       182 ~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~  255 (505)
T TIGR00898       182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFF-SLGLVLLPLVAYFIPD----WRWLQLAVSLPTFL  255 (505)
T ss_pred             HHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhH----HHHHHHHHHHHHHH
Confidence            45556667777777777888899999999999999999987765 4677888887665543    99999887544433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.55  E-value=0.00039  Score=62.22  Aligned_cols=77  Identities=9%  Similarity=0.041  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh------------hHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN------------NWRE   70 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g------------~~r~   70 (132)
                      .++++-++.+++.+...+.....+.+++|++.|+.++++..+.. .+|.+++|.+.+++...+|            +||+
T Consensus       257 ~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~-~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~  335 (742)
T TIGR01299       257 FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW-MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV  335 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccchhccccccccccHHH
Confidence            34455566666666677778889999999999999999988775 4677888888777766432            3888


Q ss_pred             HHHHHHHHHH
Q 032830           71 TALILTAILF   80 (132)
Q Consensus        71 a~~~~~~~~i   80 (132)
                      .+++..+.++
T Consensus       336 l~~i~~lp~l  345 (742)
T TIGR01299       336 FVIVCAFPCV  345 (742)
T ss_pred             HHHHHHHHHH
Confidence            8777654333

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.54  E-value=0.00031  Score=57.25  Aligned_cols=78  Identities=10%  Similarity=0.025  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      .++++++.+++.....+..++..++++|++.|++++|+.+...++ |...+|++.|.+..  | .+..|.+.+...++++
T Consensus       283 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~-~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~  358 (368)
T TIGR00903       283 LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRA-ISVALALAAMLFIS--S-AEAYFTFLAILITIAF  358 (368)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHH-HHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHH
Confidence            344555666666666677788899999999999999999999885 55788999888874  4 6666666554444444


Q ss_pred             HH
Q 032830           84 AI   85 (132)
Q Consensus        84 ~~   85 (132)
                      +.
T Consensus       359 ~~  360 (368)
T TIGR00903       359 AI  360 (368)
T ss_pred             HH
Confidence            33

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03699 putative transporter; Provisional

Probab=97.53  E-value=0.00082  Score=54.39  Aligned_cols=71  Identities=7%  Similarity=0.012  Sum_probs=48.4

Q ss_pred             HHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830           12 ELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   85 (132)
Q Consensus        12 ~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~   85 (132)
                      +++.....+...+...+..| +.++...++.....+ +|..++|.+.|++.|.+| ++.+++......+++.+.
T Consensus       305 G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        305 GFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGT-IGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHH
Confidence            33333333444445555555 446777887777654 788999999999999999 999998876555555443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.53  E-value=0.00024  Score=59.70  Aligned_cols=79  Identities=13%  Similarity=0.093  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      +.++++=++.+++..........++.+++++++|+.+..+ .... ..|+..+|++.+++..  + |||.+++.....++
T Consensus       172 ~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~-~~~~~~~~~~~a~~~~--~-Wr~~~~~~~~~~~~  246 (521)
T KOG0255|consen  172 WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFF-FVGGLMLPAGAAYITR--D-WRWLFWIISIPSGL  246 (521)
T ss_pred             HHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHH-HHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHH
Confidence            4567777888999999999999999999999999999999 4443 4566889999999988  5 99999987654444


Q ss_pred             HHHH
Q 032830           82 AAAI   85 (132)
Q Consensus        82 ~~~~   85 (132)
                      ..+.
T Consensus       247 ~~~~  250 (521)
T KOG0255|consen  247 FLLL  250 (521)
T ss_pred             HHHH
Confidence            4333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.52  E-value=0.00067  Score=54.76  Aligned_cols=72  Identities=8%  Similarity=-0.197  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      ...+-++..+...+.....+.+. |+++|++..++++.....+|...||.+.|++.|++| + ..++.+++..++
T Consensus       299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~  370 (382)
T TIGR00902       299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAA  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHH
Confidence            34444444455556666677777 999999999998765555788999999999999998 6 555555444333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00788 fbt folate/biopterin transporter

Probab=97.50  E-value=0.00027  Score=59.41  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      .+-.+.......|....+++.+|++.+++..++.+...+ +|..+|+.++|++.|++|
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~-lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILH-LGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            344555566677788999999999999999999999976 678999999999999876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.49  E-value=0.0011  Score=55.08  Aligned_cols=56  Identities=14%  Similarity=0.026  Sum_probs=46.1

Q ss_pred             chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830           18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI   74 (132)
Q Consensus        18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~   74 (132)
                      .+......+.+.+|++.|+++.++++....-+|..+|..+.|++.|++| -+..+..
T Consensus       318 ~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g-~~~~~~~  373 (400)
T PF03825_consen  318 FHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG-ARGMFDW  373 (400)
T ss_pred             HHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-chhhhhH
Confidence            3455556778999999999999999998777899999999999999987 5554433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.49  E-value=0.0005  Score=62.91  Aligned_cols=73  Identities=14%  Similarity=-0.094  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI   78 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~   78 (132)
                      ++..++.+++.++...+.++++++.+|+++||+++|+.+++. .+|..+|++++|.+.|...++...+.++.+.
T Consensus       338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~-~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLN-AAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHH-HHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            344455666777777888999999999999999999999886 4677899999999987543377666655433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.47  E-value=0.00072  Score=58.20  Aligned_cols=77  Identities=17%  Similarity=0.071  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      +.+++.++.+++.++..+.-.+++-+++|+++...|.++.++..|+ ...+||.++|.+...+| ..++|.+.++..++
T Consensus       105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~ni-ar~iGPalgG~Lva~~G-~~~~f~inalsfl~  181 (524)
T PF05977_consen  105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNI-ARIIGPALGGILVAFFG-AAAAFLINALSFLI  181 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH-HHhccchHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            4455666777777888788889999999999999999999998874 56889999999999999 88888776544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00896 CynX cyanate transporter

Probab=97.46  E-value=0.00098  Score=52.84  Aligned_cols=67  Identities=7%  Similarity=0.009  Sum_probs=48.2

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh-HHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN-WRETALILTA   77 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~-~r~a~~~~~~   77 (132)
                      ++.++..+...+.....+.+..| ++|+++++++....+ +|..++|.+.+.+.|..+. ||+.|....+
T Consensus        95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~  162 (355)
T TIGR00896        95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALM-GGAALAAAATVPLAQHSGGHWQQALAWWAL  162 (355)
T ss_pred             HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            34444444444445556677775 689999999988754 7889999999999988653 9998876543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PTZ00207 hypothetical protein; Provisional

Probab=97.45  E-value=0.00053  Score=59.98  Aligned_cols=75  Identities=15%  Similarity=0.034  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhccc-chHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDV-PSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~-~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      ++..++.++..+...+.....+.+++| ++||+++|+.....+ +|.+ .+|+..+++.|  + |++.|++.+++.++.+
T Consensus       124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~g-LGsaI~~~l~~~l~~~--~-~~~~fl~l~vl~~vv~  198 (591)
T PTZ00207        124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTG-LGSAILGSIQLAFFSD--N-TSAYFFFLMSFALVVG  198 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--h-HHHHHHHHHHHHHHHH
Confidence            334445555555555666677888886 679999999999876 5544 57777776654  4 7777777654444433


Q ss_pred             H
Q 032830           84 A   84 (132)
Q Consensus        84 ~   84 (132)
                      +
T Consensus       199 l  199 (591)
T PTZ00207        199 I  199 (591)
T ss_pred             H
Confidence            3

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.00035  Score=58.90  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=60.4

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCC-CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830           10 VGELLVFATQGPVNFICLHCVKP-SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   85 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~-~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~   85 (132)
                      +=+..++..++...+++.|.+|. ++|++++|+...... +|-.+||+++|.+=|..| .+..|.+++.++++.+.+
T Consensus       168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfis-lG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L  242 (464)
T KOG3764|consen  168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFIS-LGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGAL  242 (464)
T ss_pred             HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHh-ccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHH
Confidence            33455566778888999999996 668999999988875 899999999999999999 999998887666555444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.40  E-value=0.0024  Score=51.76  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=45.1

Q ss_pred             HHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           14 LVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        14 ~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +.....+..+...+.++..+..++..++++...+ +|...++++.|++.|++| |+..|....+..+++
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~  382 (402)
T PRK11902        316 CGGMGTAAFVALLMALCNRSFSATQYALLSALAS-VGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPG  382 (402)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence            3344445556666666666666677776665543 455555668999999999 999888876555444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.37  E-value=0.0017  Score=52.90  Aligned_cols=75  Identities=17%  Similarity=0.042  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCC-chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSI-RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~-R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ++++++.+++.....++.+..+++..|++. +|++.++.++..+ +|..++..+.+ +.|.+| .+..+.+..+..+++
T Consensus       297 ~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~  372 (393)
T PRK11195        297 YPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNEN-LAMLLMLGLYS-LLVKLG-VPVVAVIVGFGLLVA  372 (393)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHH-HHHHHHHHHHH-HHHHcC-CCHHHHHHHHHHHHH
Confidence            344445566666666788888888766654 7999999998865 67788998888 558888 888887765544433

>TIGR00898 2A0119 cation transport protein

Probab=97.36  E-value=0.00073  Score=56.15  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ++.++.+++.....+..+....+.+|++.|++++|+.++..+ +|.+++|.+.| + +..+ +...+.+.++..+++
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-ig~~i~p~i~~-~-~~~~-~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       415 ALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMAR-VGSIISPFLVY-L-GEKW-LFLPLVLFGGLALLA  487 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHH-HHHHHHhHHHH-H-HHHH-HhhHHHHHHHHHHHH
Confidence            344455555555566677788899999999999999998875 67799999999 4 4445 555665554444443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.35  E-value=0.0019  Score=52.03  Aligned_cols=64  Identities=9%  Similarity=0.062  Sum_probs=44.8

Q ss_pred             hcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830           16 FATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus        16 ~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      +...........+..+++.++...+...... .+|...|+...|++.|++| ||..|++.++..++
T Consensus       112 a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~-~lG~~~g~~~~~~l~~~~g-w~~~f~~~a~l~~~  175 (390)
T TIGR02718       112 ATQDIATDGMAAEHFNGRTLAKGNAVQIAGV-MIGFFGGGAGTLVLFGKFG-QRPAFLLVACVPLA  175 (390)
T ss_pred             HHHHHHHHHHHHHhCCHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence            3333334445556666666677777776654 4678888888899999999 99999987655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.34  E-value=0.0014  Score=55.08  Aligned_cols=79  Identities=4%  Similarity=-0.114  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   86 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~   86 (132)
                      ..++.++.-....+..++.+.+..|++.||+.+|++.+.. .+|..+|+.+.....|..+ |.+.+..++...++.++++
T Consensus       387 ~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~-~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       387 IYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ-AMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHH
Confidence            3334444444455667788899999999999999999876 4788888888888777767 8888877766555555544


Q ss_pred             H
Q 032830           87 F   87 (132)
Q Consensus        87 ~   87 (132)
                      +
T Consensus       465 ~  465 (475)
T TIGR00924       465 A  465 (475)
T ss_pred             H
Confidence            3

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.30  E-value=0.0029  Score=50.97  Aligned_cols=54  Identities=11%  Similarity=0.049  Sum_probs=35.8

Q ss_pred             hHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           26 CLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        26 i~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ..+..|++.++.+.  .+... .+|.++||.+.|++.|+.++|++.+....+...++
T Consensus       315 ~~~~~~~~~~~~~~--~~~~~-~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~  368 (382)
T PRK10091        315 LQNAKGGELLGAAG--GQIAF-NLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAA  368 (382)
T ss_pred             HHhCCcchHHHHHH--HHHHH-HHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHH
Confidence            33444455555543  34443 47889999999999997655999998875444333

>PRK10054 putative transporter; Provisional

Probab=97.28  E-value=0.0018  Score=52.85  Aligned_cols=53  Identities=13%  Similarity=0.178  Sum_probs=41.7

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      +.....+.+..|++.|+++.+..++.  .+|..+||+++|++.|++| ....+.+.
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~~~--~~G~~~Gp~~~G~l~~~~g-~~~~~~~~  369 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQSLG--WLGAAINPLVSGVILTTLP-PWSLFVIL  369 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHHHH--HHHHHHHHHHHHHHHHHcC-hhhHHHHH
Confidence            34445677899999999999876643  4788999999999999998 66666553

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.21  E-value=0.00087  Score=56.24  Aligned_cols=46  Identities=13%  Similarity=-0.021  Sum_probs=38.5

Q ss_pred             hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830           19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV   65 (132)
Q Consensus        19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~   65 (132)
                      .+..+....+.+|++.|+++.|+.+.+.+ +|..++|.++|++.|..
T Consensus       410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~-~~~~~~~~~~~~l~~~~  455 (502)
T TIGR00887       410 NATTFIVPGEVFPTRYRSTAHGISAASGK-AGAIIGQFGFLYLAQHG  455 (502)
T ss_pred             CchhhhhhhccCchhHHHHHHHHHHHHhh-hHHHHHHHHhhhhhccc
Confidence            34455667899999999999999998876 57799999999999953

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.21  E-value=0.0017  Score=54.22  Aligned_cols=57  Identities=9%  Similarity=0.057  Sum_probs=41.6

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            9 AVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      .+.++......+..++++.|+++       .+..|...|++++..+ +|..+|+.+.|++.|..|
T Consensus       332 ~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K-~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        332 ILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK-GGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            33444445555666778889966       3445678899888876 688999999999998764

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.19  E-value=0.0037  Score=50.96  Aligned_cols=70  Identities=7%  Similarity=0.051  Sum_probs=48.3

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +.++......+.....+++.+| ++++++.+++....+ +|..+||.+.|++.|+.| ++..+..+.++.++.
T Consensus       314 l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~  383 (394)
T PRK10213        314 IWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQ-LANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHH
Confidence            3343434444555557777887 556777777766654 788999999999999998 888877765444333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.15  E-value=0.0034  Score=50.71  Aligned_cols=48  Identities=8%  Similarity=-0.232  Sum_probs=35.6

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHH
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWR   69 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r   69 (132)
                      ++.+.... ..++++|+++.+++++... +|..+|+.+.|++-|..+++.
T Consensus       328 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        328 AGLYRLTL-FSSDVSKGTVSAAMGMLSM-LIFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             hhHHHHHh-hhccccccHHHHHHHHHHH-HHHHHHHHHHHhcccCCchHH
Confidence            33334333 3456899999999998864 677899999999999888343

>TIGR01272 gluP glucose/galactose transporter

Probab=97.15  E-value=0.0031  Score=50.21  Aligned_cols=65  Identities=14%  Similarity=0.075  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      .+.+.+++.+...+...+..++..|++ .+++.++..+  ..+|.+++|++.|++.|++| .+++|++.
T Consensus       236 ~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~~--~~~Gg~i~P~l~G~lad~~g-~~~a~~v~  300 (310)
T TIGR01272       236 FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILCL--AIVGGAIVPLLQGSLADCLG-IQLAFALP  300 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHH--HHhcchHHHHHHHHHHHhcc-chHHHHHH
Confidence            444566777777777788888887764 5677777543  45788999999999999999 99998754

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.11  E-value=0.0023  Score=56.19  Aligned_cols=75  Identities=17%  Similarity=0.115  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ++..++.++. +.........+.+.+|.+.|....++.... .+....+||.+...+..+.+ |||.|++......++
T Consensus       135 iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~-~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i~~~i~  209 (599)
T PF06609_consen  135 IAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIP-FIITTWISPLIAQLFAAHSG-WRWIFYIFIIWSGIA  209 (599)
T ss_pred             HHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHH-HHhhhcccHHHHHHhccCCC-cchHHHHHHHHHHHH
Confidence            3444444443 222233455689999999999888776654 34444567877766655545 999999875444433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.05  E-value=0.0043  Score=52.83  Aligned_cols=78  Identities=12%  Similarity=-0.001  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccc----hHHHHHH-HHH-------------h
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVP----SSPLVGV-LQD-------------R   64 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~----gP~i~G~-l~D-------------~   64 (132)
                      .++++-++.++. ....++....+.+++|+++||+++|+.....+ +|..+    .|.+.+. +.+             .
T Consensus       130 ~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~-~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~  207 (462)
T PRK15034        130 IFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGN-LGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSV  207 (462)
T ss_pred             HHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhccccccccccch
Confidence            344445555554 55667788899999999999999999963332 45443    4443321 222             3


Q ss_pred             hhhHHHHHHHHHHHHHHHH
Q 032830           65 VNNWRETALILTAILFPAA   83 (132)
Q Consensus        65 ~g~~r~a~~~~~~~~iv~~   83 (132)
                      .+ ||++..+..+..++.+
T Consensus       208 ~~-~~~~~~~~~~~~iv~~  225 (462)
T PRK15034        208 MS-LANAAWIWVPLLAIAT  225 (462)
T ss_pred             HH-HHHHHHHHHHHHHHHH
Confidence            34 7777776655444443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.05  E-value=0.0041  Score=50.09  Aligned_cols=65  Identities=8%  Similarity=-0.203  Sum_probs=42.6

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      ++.++......+.....+.+. +++++++..++++...+..|..+||.+.|++.|++| + ..++..+
T Consensus       301 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~  365 (382)
T PRK11128        301 ILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMA  365 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHH
Confidence            333333333334444555554 666678889988755556777899999999999998 5 3444443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.03  E-value=0.0022  Score=51.96  Aligned_cols=84  Identities=14%  Similarity=0.037  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCC---chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSI---RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL   79 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~---R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~   79 (132)
                      ++++.+.+..++.++--+.......|.+++++   |.+....+.+..| +|..+++.+.+++-|+.| |.+.|.++++..
T Consensus        35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in-~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~  112 (372)
T PF00854_consen   35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN-IGSLFSPTLVPYIQQNYG-WFLGFGIPAIGM  112 (372)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHCS--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh-hhhHhhcccchhhccccc-hhhhhhHHHHHH
Confidence            45566666677777777888889999999763   4455556677777 687889999999999999 999999988777


Q ss_pred             HHHHHHHHH
Q 032830           80 FPAAAIWFI   88 (132)
Q Consensus        80 iv~~~~~~~   88 (132)
                      +++.+++..
T Consensus       113 ~~~~~~f~~  121 (372)
T PF00854_consen  113 LLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            777655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.01  E-value=0.0026  Score=51.33  Aligned_cols=57  Identities=14%  Similarity=0.138  Sum_probs=42.2

Q ss_pred             HhHhhcCCCCchHHHHH-HHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830           25 ICLHCVKPSIRPLSMAI-STVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus        25 ii~~~vp~~~R~~a~gi-~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      ...+..|++.++++.++ ++... .+|..++|++.|++.|.+| ++..|.+.++..++++
T Consensus       331 ~~~~~~~~~~~at~~~~~~~~~~-~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~  388 (396)
T TIGR00882       331 YITSQFDVRLSATIYLIGFQFAK-QLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFT  388 (396)
T ss_pred             HHHHhCCcceEEEeehHHHHHHH-HHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHH
Confidence            34555677777776665 44444 4788999999999999999 9999998765554443

>PRK09848 glucuronide transporter; Provisional

Probab=97.01  E-value=0.003  Score=52.03  Aligned_cols=59  Identities=10%  Similarity=0.056  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCC-------CchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPS-------IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~-------~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      .+.+.++......++.+++..|..|.+       ++|...|++++..+ +|..+|+.+.|.+.+..|
T Consensus       325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~k-lg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRK-CGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            344555566666777788888988754       45999999999865 788999999999988654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.90  E-value=0.0035  Score=50.77  Aligned_cols=65  Identities=17%  Similarity=0.128  Sum_probs=42.1

Q ss_pred             HHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHH-------hhhhHHHHHHHHHHHHH
Q 032830           14 LVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD-------RVNNWRETALILTAILF   80 (132)
Q Consensus        14 ~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D-------~~g~~r~a~~~~~~~~i   80 (132)
                      +......|..++..+.++ +++|++..++.....+ +|..+++.+.+.+..       ..+ ||+.+.+.+++.+
T Consensus       112 ~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~-~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i~~~l~~  184 (437)
T TIGR00792       112 FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGAT-LGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALVLALIGV  184 (437)
T ss_pred             HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCccccc-HHHHHHHHHHHHH
Confidence            333444566677777774 6899999998877654 565666666555553       345 9988877654433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.85  E-value=0.0084  Score=50.85  Aligned_cols=83  Identities=4%  Similarity=-0.090  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH------h---hhhHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD------R---VNNWRETALILT   76 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D------~---~g~~r~a~~~~~   76 (132)
                      ...++.++.-....++.+..+++..|+++++.++|++.+..+ +|..+|..+.+....      -   .+++.+.|...+
T Consensus       384 ~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~-ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~  462 (489)
T PRK10207        384 LVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQA-AAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIG  462 (489)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHH
Confidence            344455555566667788999999999999999999998865 566666665544421      0   112556666666


Q ss_pred             HHHHHHHHHHHHH
Q 032830           77 AILFPAAAIWFIG   89 (132)
Q Consensus        77 ~~~iv~~~~~~~~   89 (132)
                      ...++.++++++.
T Consensus       463 ~~~~~~~v~~~~~  475 (489)
T PRK10207        463 LVTLGVAVVMALM  475 (489)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666655555543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.84  E-value=0.0044  Score=53.23  Aligned_cols=68  Identities=25%  Similarity=0.301  Sum_probs=51.4

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL   79 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~   79 (132)
                      ++.++..++...|+..++...+ +++|+.|+|+...... +|..+=|++.-++.|.+| ||+++++.....
T Consensus       143 vi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG-~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~  210 (509)
T KOG2504|consen  143 VIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTG-VGTVVFPPLLKYLLSKYG-WRGALLIFGGIS  210 (509)
T ss_pred             HHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCC-cceeeHHHHHHHHHHHhC-cHHHHHHHHHHH
Confidence            3455555666666666666555 5679999999988865 677888888899999999 999999875443

>PRK10133 L-fucose transporter; Provisional

Probab=96.81  E-value=0.0077  Score=50.08  Aligned_cols=58  Identities=12%  Similarity=0.000  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ   62 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~   62 (132)
                      +++..++.++..+...+..+..+.++.|+++|...+++.+.... +|..+||.+++.+.
T Consensus       120 ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~-~G~~~g~~~g~~l~  177 (438)
T PRK10133        120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS-FGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            34455666666677777778888888777777778888887754 68888998877654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.0049  Score=51.87  Aligned_cols=69  Identities=19%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      .+....+.+++.+..++.++++-.+..| ++-+.+.++..+  .++|+++-|++.|++.|+.| ....+...+
T Consensus       327 ~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~m--aivGGAiiP~l~G~i~d~~g-~~~~~~~~p  395 (422)
T COG0738         327 ALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM--AIVGGAIIPPLQGVIADMFG-IQLTFLIVP  395 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeee--heecchHHHHHHHHHHHhhh-hHHHHHHHH
Confidence            3445667788888889999999999999 555555555444  36899999999999999999 666655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.75  E-value=0.018  Score=48.29  Aligned_cols=66  Identities=15%  Similarity=0.244  Sum_probs=51.3

Q ss_pred             hHHHHHhHhhcC--CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 032830           20 GPVNFICLHCVK--PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF   87 (132)
Q Consensus        20 ~~~~~ii~~~vp--~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~   87 (132)
                      +.......+..+  |+.+..+.+++....| +|...|..++|.+.|++| +....+......+++.++..
T Consensus       316 ~~~~~~~~~~a~~~p~~~~~a~sl~~aa~n-lgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         316 PALQGLQTRLARLAPDAADLAGSLNVAAFN-LGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             hhhhHHHHHhcccCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHH
Confidence            334445555555  6889999999999988 799999999999999988 99998887666555554443

>PRK11043 putative transporter; Provisional

Probab=96.71  E-value=0.017  Score=46.55  Aligned_cols=47  Identities=15%  Similarity=-0.143  Sum_probs=32.9

Q ss_pred             chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830           18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus        18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      ..+..+....+..| ++++++.|+++.... .+...++.+.|.+.|...
T Consensus       313 ~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~-~~~~~~~~~~g~l~~~~~  359 (401)
T PRK11043        313 IYPIVVAQALRPFP-QATGKAAALQNTLQL-GLCFLASLLVSALISTPL  359 (401)
T ss_pred             HHHHHHHHHhhhCc-ccChHHHHHHHHHHH-HHHHHHHHHHHHccCCCh
Confidence            33334444445555 679999999998754 455788888999988644

>TIGR00895 2A0115 benzoate transport

Probab=96.68  E-value=0.0025  Score=50.14  Aligned_cols=56  Identities=20%  Similarity=0.169  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVL   61 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l   61 (132)
                      ++..++.+++.....+..+..+.+.+|+++|+++.|+...+.+ +|..+||.+.|++
T Consensus       342 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~g~~~~G~l  397 (398)
T TIGR00895       342 LLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGR-LGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHhHHhc
Confidence            3444555666666677788899999999999999999998875 6779999999976

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.67  E-value=0.017  Score=49.28  Aligned_cols=90  Identities=9%  Similarity=0.001  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCC---------------------CCchHHHHHHHHHHHhhcccchHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKP---------------------SIRPLSMAISTVSIHIFGDVPSSPLVGVL   61 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~---------------------~~R~~a~gi~~l~~~llG~~~gP~i~G~l   61 (132)
                      +|++.+.+..++.....++++-++.+.+|+                     ++-|.++|+...+- .+|+..-|++.|+.
T Consensus       347 ~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G-~~Ggf~~p~~~g~~  425 (462)
T PRK15034        347 AFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIG-AVGGFFIPQAFGMS  425 (462)
T ss_pred             HHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHH-HcccchhhHHHHHH
Confidence            344444444455566677778788788874                     15678888887764 57778899999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032830           62 QDRVNNWRETALILTAILFPAAAIWFIGIFLHSVD   96 (132)
Q Consensus        62 ~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~   96 (132)
                      .|.+|++..+|++..+..+++.+   +.+++|.++
T Consensus       426 ~~~~g~~~~~~~~~~~~~~~~~~---~~w~~y~r~  457 (462)
T PRK15034        426 LNMTGSPVGAMKVFLIFYIVCVL---LTWLVYGRR  457 (462)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHH---HHHHHhccC
Confidence            99999898888876555444433   344555333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.67  E-value=0.0076  Score=48.45  Aligned_cols=60  Identities=17%  Similarity=0.014  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV   65 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~   65 (132)
                      ++..++.++..+...+.....+.+..++++|+++++++....+ +|...||.+.+.+.+..
T Consensus        98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633         98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYY-LGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccccc
Confidence            3444455555444455556677788999999999999988865 78899999999988764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.66  E-value=0.015  Score=52.98  Aligned_cols=71  Identities=11%  Similarity=0.001  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh-hHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN-NWRETALILTA   77 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g-~~r~a~~~~~~   77 (132)
                      ++++++.+++..+..++.++.+++.+|++.||+++|+.+++.+ +|...++.+.+.+.. .+ .+...+.+.+.
T Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~-lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~  397 (1146)
T PRK08633        326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQN-VGMLLFLALTTLFSG-LGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHHH-hccCHHHHHHHHHH
Confidence            3444555556666667788899999999999999999998875 565667776665544 33 15555554443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.0049  Score=50.69  Aligned_cols=45  Identities=9%  Similarity=-0.040  Sum_probs=39.9

Q ss_pred             HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh
Q 032830           22 VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN   67 (132)
Q Consensus        22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~   67 (132)
                      .|..+..++|.++-|++.|+...+.| +|.+..|++.|.+.|+-|+
T Consensus       373 lWP~va~~vpE~qLGTaygf~qsIqN-Lgla~i~Iiag~i~d~~g~  417 (459)
T KOG4686|consen  373 LWPCVASLVPEEQLGTAYGFIQSIQN-LGLAFIPIIAGFIADGDGS  417 (459)
T ss_pred             HhhhhhhhCCHHHhcchHHHHHHHHh-hhhhHHhhhhheeecCCCc
Confidence            55677889999999999999999887 7999999999999998664

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.44  E-value=0.023  Score=46.86  Aligned_cols=69  Identities=13%  Similarity=0.079  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-----hhHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-----NNWRETALIL   75 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-----g~~r~a~~~~   75 (132)
                      .+.++.+.+++.+..++..+.+..+..+++.+..+.++.+.   ++|++..|++.|++.|..     |+.+.+|.+.
T Consensus       324 ~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~---~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~  397 (410)
T TIGR00885       324 GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA---IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP  397 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---HhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence            34556677777777788888999999998766555555443   478899999999999965     3477777653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.42  E-value=0.0068  Score=49.35  Aligned_cols=44  Identities=9%  Similarity=-0.034  Sum_probs=32.4

Q ss_pred             CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830           33 SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL   79 (132)
Q Consensus        33 ~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~   79 (132)
                      ++++.+.|......+ +|..+||++.|++.|. + |++.|++.++..
T Consensus       137 ~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~~-~-~~~~f~~~~~~~  180 (420)
T PRK09528        137 RRSGFEYGRARMWGS-LGWALCAFIAGILFNI-N-PQINFWLGSGSA  180 (420)
T ss_pred             hhccccchhhHHhhh-HHHHHHHHHHHHHHhc-C-chHhHHHHHHHH
Confidence            456667777666654 6889999999999884 6 998887764333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.37  E-value=0.031  Score=47.43  Aligned_cols=75  Identities=8%  Similarity=0.070  Sum_probs=46.1

Q ss_pred             HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-------------hhHHHHHHH
Q 032830            8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-------------NNWRETALI   74 (132)
Q Consensus         8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-------------g~~r~a~~~   74 (132)
                      .++.++.-....+...+.+.+..|++.||+++|++.+..     +.|+.+.|.+.+..             +.+.+.|..
T Consensus       389 ~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~-----a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~  463 (500)
T PRK09584        389 YGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTT-----AGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQ  463 (500)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccccccccchhhhhhHHHHHHH
Confidence            333444444455667788999999999999999887664     23445555554321             115677776


Q ss_pred             HHHHHHHHHHHHH
Q 032830           75 LTAILFPAAAIWF   87 (132)
Q Consensus        75 ~~~~~iv~~~~~~   87 (132)
                      .++..++.+++++
T Consensus       464 ~~~~~~~~a~~~~  476 (500)
T PRK09584        464 IGIATAVIAVLML  476 (500)
T ss_pred             HHHHHHHHHHHHH
Confidence            6655544444443

>PRK10133 L-fucose transporter; Provisional

Probab=96.27  E-value=0.032  Score=46.42  Aligned_cols=67  Identities=12%  Similarity=0.174  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      ..+.+.+++.+...++.++..++..|++ .+.+.++..+  ..+|..++|.+.|++.|..|+.+.+|.+.
T Consensus       352 ~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~--~~~g~~~~~~i~G~l~~~~g~~~~~~~v~  418 (438)
T PRK10133        352 IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM--TIIGGGIVTPVMGFVSDAAGNIPTAELIP  418 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH--HhccchHHHHHHHHHHHhccchHHHHHHH
Confidence            4555677777888888888888887763 6778887764  34678999999999999986578888754

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.25  E-value=0.0096  Score=50.40  Aligned_cols=76  Identities=11%  Similarity=0.017  Sum_probs=60.5

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   85 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~   85 (132)
                      .+.+++.+..++.+=+.+.+.+||++-+...|+|++.-+ .....||.+++.++|.+|+-|..+....+++.++.++
T Consensus       349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgr-a~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGR-AASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhh-HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            344555555566677899999999999999999999866 6789999999999999999999888776555555433

>PRK09669 putative symporter YagG; Provisional

Probab=96.24  E-value=0.025  Score=46.60  Aligned_cols=61  Identities=16%  Similarity=0.129  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      ++..++.++......+..++++.|+++       .++.|...|++++..+ +|.++||.+.|++.|..|
T Consensus       323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~k-lg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIK-LGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            334445555666666667788888886       3445678888888876 788999999999999764

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.14  E-value=0.0047  Score=53.07  Aligned_cols=73  Identities=11%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             hcchhHHHHHhHhhcCC--CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032830           16 FATQGPVNFICLHCVKP--SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGI   90 (132)
Q Consensus        16 ~~~~~~~~~ii~~~vp~--~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~   90 (132)
                      ..--+....++.++.|+  .+|-...+++.+..| +|...+|++.|++.+..| |+..|...++....+.+.+.+..
T Consensus       132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iN-iGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGIN-IGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             ccccccHHHHHHHhcCCCCcccCCCccEEEEEee-hHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            33345666788899996  457777788888887 678999999999999999 99999998888888776666544

>TIGR00788 fbt folate/biopterin transporter

Probab=96.12  E-value=0.011  Score=49.63  Aligned_cols=76  Identities=20%  Similarity=0.100  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHH--hhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIH--IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~--llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .+++++..++.+.....+-+...+..+ ++++...++.++.-.  .+|..+|+.+.|.+.|+++ |+..|++.+...++.
T Consensus       124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~-~~~~f~~~a~l~ll~  201 (468)
T TIGR00788       124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL-TRILFLITAALLLLQ  201 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHH
Confidence            345667777777777888888888888 555443333322221  2688999999999999999 999998875444333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=95.89  E-value=0.06  Score=45.37  Aligned_cols=75  Identities=21%  Similarity=0.198  Sum_probs=51.3

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF   98 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~   98 (132)
                      .+..--+.+.+|++..++...+......-+|..+.+++.|++-|++| .+.++++++.+.   .++..++.+..++++.
T Consensus       331 va~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv---~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  331 VAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIV---LPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHH---HHHHHHheeeecCCCc
Confidence            44455677899999988888886544455778888999999999999 999998875432   2333344555555543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.88  E-value=0.016  Score=46.79  Aligned_cols=45  Identities=7%  Similarity=-0.014  Sum_probs=31.1

Q ss_pred             chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           35 RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        35 R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ++...+...... .+|.++||.+.|.+.+. + |++.|++.+...++.
T Consensus       131 ~~~~~g~~~~~~-~~g~~~g~~~~g~l~~~-~-~~~~f~~~~~~~~~~  175 (396)
T TIGR00882       131 SNFEYGKARMFG-CVGWALCASIAGILFSI-D-PQIVFWLGSGFALIL  175 (396)
T ss_pred             cccccchhhhhc-ccHHHHHHHHHhhhhcc-C-chHHHHHHHHHHHHH
Confidence            344556555554 47889999999988774 7 999998775444333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.72  E-value=0.06  Score=47.73  Aligned_cols=85  Identities=14%  Similarity=0.056  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCC---chHHHHHHHHHHHhhcccchHHHHHHHHHhh-------hhHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSI---RPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-------NNWRETAL   73 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~---R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-------g~~r~a~~   73 (132)
                      .++.+++...+....-+...+...|..++++   |-....++.++.| +|..+++++.+++.+..       + |..+|.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iN-iGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~  165 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAIN-AGSLISTIITPILRGDVGCFGCQDC-YPLAFG  165 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccCcc-hHHHHH
Confidence            3445555555555566667777788887643   5667777777777 57788999999998654       4 999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 032830           74 ILTAILFPAAAIWFIGI   90 (132)
Q Consensus        74 ~~~~~~iv~~~~~~~~~   90 (132)
                      ++.++.+++.+++....
T Consensus       166 i~~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       166 VPAILMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            88777777766655433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=95.66  E-value=0.025  Score=46.39  Aligned_cols=59  Identities=12%  Similarity=0.091  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      ...+.++..+...++.....++.+|+++|++++|++++..+ +|..+|+.+.|.+.|+..
T Consensus       354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~ig~~i~g~~~~~~~  412 (485)
T TIGR00711       354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQ-LGGSIGTALITTILTNRT  412 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            34455555555566777778888999999999999999864 788999999999988644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.57  E-value=0.092  Score=44.36  Aligned_cols=90  Identities=16%  Similarity=0.075  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .++..+.....+.....+.++.++-+.+|+ +-+.+.|+...+-+ +|...=|...|.+-|.+|++..+|++.....+++
T Consensus       316 ~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~-lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a  393 (417)
T COG2223         316 VFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGG-LGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVA  393 (417)
T ss_pred             HHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhcc-ccccchhHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            455555666666777777788887777776 68888998887754 6667789999999999999999998875444444


Q ss_pred             HHHHHHHHHHhhccc
Q 032830           83 AAIWFIGIFLHSVDK   97 (132)
Q Consensus        83 ~~~~~~~~~~~~~~~   97 (132)
                      .   ...++.|++++
T Consensus       394 ~---v~~~~~y~r~~  405 (417)
T COG2223         394 L---VLTWALYARRR  405 (417)
T ss_pred             H---HHHHHHHHhcc
Confidence            3   33445555444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=95.52  E-value=0.054  Score=47.67  Aligned_cols=57  Identities=9%  Similarity=0.031  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ   62 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~   62 (132)
                      +.+.++++++......+...+.+-.+|+++-+.++|+.... +.+|+.+|..++..+-
T Consensus       409 i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~-R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  409 IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSI-RSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHH-HHHhhHHHHHHHHHHH
Confidence            45566777777777788888888999999999999988776 6678788888775543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.49  E-value=0.016  Score=49.37  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH-Hh-hhhHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ-DR-VNNWRETALILTAILF   80 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~-D~-~g~~r~a~~~~~~~~i   80 (132)
                      ++++++.++..+.+...+..+.-.+|. .|+.-+..+|+.+++..+ ...++|.++|.+. |. ..+|++.|.+.+++.+
T Consensus       360 ~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~-~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~  437 (466)
T KOG2532|consen  360 LAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGAL-AGFIAPLLVGIIVTDNTREEWRIVFLIAAGILI  437 (466)
T ss_pred             HHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHH-HHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHH
Confidence            455566666555555555555555554 567799999999998764 5589999999999 53 3459999999887777


Q ss_pred             HHHHHHH
Q 032830           81 PAAAIWF   87 (132)
Q Consensus        81 v~~~~~~   87 (132)
                      ++.++|.
T Consensus       438 ~~~i~f~  444 (466)
T KOG2532|consen  438 VGNIIFL  444 (466)
T ss_pred             Hhchhee
Confidence            7775544

>PRK11462 putative transporter; Provisional

Probab=95.41  E-value=0.12  Score=43.31  Aligned_cols=55  Identities=13%  Similarity=0.036  Sum_probs=37.0

Q ss_pred             HHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830           11 GELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus        11 ~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      .+++.....+..++++.|+++       .+.-|...+.+++..+ +|.++|+.+.|++.+..|
T Consensus       328 ~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~K-lg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        328 IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLK-LGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            343333334444677888877       3344566677778765 788999999999988753

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=95.33  E-value=0.037  Score=46.52  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR   64 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~   64 (132)
                      +...++.++......++....+++.+|+++++.+.+++++..+ +|..+|+.+.|.+.+.
T Consensus       355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE-LGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            3445566666667777788888999999999999999998865 7889999999998764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=95.24  E-value=0.17  Score=40.61  Aligned_cols=41  Identities=15%  Similarity=-0.019  Sum_probs=24.8

Q ss_pred             HHhHhhcCCCCc-hHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHH
Q 032830           24 FICLHCVKPSIR-PLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRE   70 (132)
Q Consensus        24 ~ii~~~vp~~~R-~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~   70 (132)
                      ...+...|.++| +.+.+++.     ++...||.+.|++.|++| +..
T Consensus       313 ~~~~~~~~~~~~~g~~~~~~~-----~~~~~g~~~~~~l~~~~g-~~~  354 (392)
T PRK10473        313 AMSQALGPFSLRAGVASSTLG-----IAQVCGSSLWIWLAAVLG-ISA  354 (392)
T ss_pred             HHHHHhccCcccccHHHHHHH-----HHHHHHHHHHHHHHHHhc-cch
Confidence            344556665444 44444433     344667888889999888 544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=95.06  E-value=0.078  Score=44.39  Aligned_cols=60  Identities=13%  Similarity=0.139  Sum_probs=40.9

Q ss_pred             hcchhHHHHHhH-hhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830           16 FATQGPVNFICL-HCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   76 (132)
Q Consensus        16 ~~~~~~~~~ii~-~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~   76 (132)
                      ....+-....+. |...+++-+.-+|+.+-+-+++. +.||.++|++-|.+|||+..+....
T Consensus       311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA-a~GP~l~G~lhDa~gsw~~~~~~l~  371 (395)
T COG2807         311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA-AFGPWLFGFLHDATGSWSAPLVLLA  371 (395)
T ss_pred             chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH-hhhhhhHhHHHHhcCChHHHHHHHH
Confidence            333444444333 44445666666666666556665 7899999999999999999988753

>PRK09669 putative symporter YagG; Provisional

Probab=95.06  E-value=0.19  Score=41.40  Aligned_cols=64  Identities=14%  Similarity=0.056  Sum_probs=38.7

Q ss_pred             HHHHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh------hHHHHHHHHH
Q 032830           12 ELLVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN------NWRETALILT   76 (132)
Q Consensus        12 ~~~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g------~~r~a~~~~~   76 (132)
                      ..+......|..++..++.+ +++|.+..+......+ +|..+++.+...+...++      .|+..+.+.+
T Consensus       120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~-~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSF-IGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            33444555677778888874 5889988887776654 555666655444444332      1666655544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=95.05  E-value=0.16  Score=39.93  Aligned_cols=53  Identities=9%  Similarity=0.097  Sum_probs=32.5

Q ss_pred             hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830           19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI   74 (132)
Q Consensus        19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~   74 (132)
                      .+.......+..| ++|+++.++++......|...+|+ .|.+.|..+ |...+..
T Consensus       318 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~-~~~~~~~  370 (385)
T TIGR00710       318 SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTA-WPMSLSC  370 (385)
T ss_pred             HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccCh-HHHHHHH
Confidence            3344445555555 689999999988876566555554 565555444 5544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.02  E-value=0.00037  Score=56.92  Aligned_cols=72  Identities=8%  Similarity=-0.073  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH---hhhhHHHHHHHHHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD---RVNNWRETALILTAIL   79 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D---~~g~~r~a~~~~~~~~   79 (132)
                      +.-++.++..+.........+.+..|++.|+...++..... .+|..++..+.-.+.+   ..+ ||+.+.+..+..
T Consensus       107 ~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~~~~  181 (451)
T PF00083_consen  107 IGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFW-ALGILLASLIGYIVSYYSDNWG-WRILLIFGAIPS  181 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-cccccccccccc
Confidence            33445566666667777788899999999999999988875 4676666655322222   223 999988764333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00896 CynX cyanate transporter

Probab=94.92  E-value=0.038  Score=43.73  Aligned_cols=57  Identities=16%  Similarity=-0.009  Sum_probs=37.5

Q ss_pred             HHHHhcchhHHHHHhHhhc-CCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHH
Q 032830           12 ELLVFATQGPVNFICLHCV-KPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWR   69 (132)
Q Consensus        12 ~~~~~~~~~~~~~ii~~~v-p~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r   69 (132)
                      +++.....+.....+.+.. ++++++.+.++.+...+ +|..+||.+.|++.|++|+|.
T Consensus       296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGY-LLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccC
Confidence            3333333333444444444 45677888888776654 566889999999999988654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.90  E-value=0.17  Score=43.51  Aligned_cols=40  Identities=15%  Similarity=0.066  Sum_probs=28.6

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD   63 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D   63 (132)
                      +...+++.+..|++.||+.+|++.+...    ..||.+.|++.+
T Consensus       396 Pvgls~~~~laP~~~~g~~mg~w~l~~~----~~~~~~~g~~~~  435 (493)
T PRK15462        396 PVAMSQITRIEIPGVTGVLTGIYMLLSG----AIANYLAGVIAD  435 (493)
T ss_pred             hHHHHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            4466789999999999999999966432    344555555444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=94.78  E-value=0.012  Score=50.70  Aligned_cols=79  Identities=14%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHh-cchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH-----hhhhHHHHHHHHHHH
Q 032830            5 LALFAVGELLVF-ATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD-----RVNNWRETALILTAI   78 (132)
Q Consensus         5 ~~~~~l~~~~~~-~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D-----~~g~~r~a~~~~~~~   78 (132)
                      +++..+..|+.. .+.+....+...++|.+.||+.-|+....- -+|.++|...++++.|     ..+ .+++|++....
T Consensus       409 ~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~G-K~GAivg~~~F~~~t~~~yp~~~g-~~~v~~i~~~~  486 (538)
T KOG0252|consen  409 VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASG-KAGAIVGAFGFLYLTDHNYPPNIG-VRNVFIILAGC  486 (538)
T ss_pred             eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhc-cchHHHHHHHhhHhhhccCCcccc-chHHHHHHHHH
Confidence            344444444443 334445567889999999999999988764 5788999999999999     567 89999887655


Q ss_pred             HHHHHHH
Q 032830           79 LFPAAAI   85 (132)
Q Consensus        79 ~iv~~~~   85 (132)
                      ++++.++
T Consensus       487 ~~~gi~~  493 (538)
T KOG0252|consen  487 MLLGILF  493 (538)
T ss_pred             HHHhHhe
Confidence            5555443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=94.77  E-value=0.096  Score=42.92  Aligned_cols=71  Identities=18%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh------hHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN------NWRETALILT   76 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g------~~r~a~~~~~   76 (132)
                      ++..++..++......|..++..++.+ +++|....+...... .+|..+...+.+.+.+.+|      +|++...+.+
T Consensus       107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~-~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~  184 (428)
T PF13347_consen  107 FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFS-MIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA  184 (428)
T ss_pred             HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHH-HHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence            334444466666777888899999998 579999999888875 4676666777777776654      3666666553

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=94.76  E-value=0.05  Score=46.36  Aligned_cols=59  Identities=17%  Similarity=-0.001  Sum_probs=46.2

Q ss_pred             chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830           18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI   78 (132)
Q Consensus        18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~   78 (132)
                      ..+.+++.+.|+...+.|....|+...... .+...+|.+.+.+....| .-..+++..+.
T Consensus       129 ~~s~~~a~vadis~~~~R~~~~gll~~~~~-~~~~~~p~~~~~~~~~~~-~a~~f~ia~~~  187 (463)
T KOG2816|consen  129 IFSVGFAYVADISSEEERSSSIGLLSGTFG-AGLVIGPALGGYLVKFLG-IALVFLIAAAS  187 (463)
T ss_pred             hhhhhhhheeeccchhHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence            346677888999999999999999988665 566889999999998877 55555554433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.70  E-value=0.23  Score=41.53  Aligned_cols=56  Identities=14%  Similarity=0.093  Sum_probs=46.3

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830           10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      +..+.....+-|...++.++.|+..-|+..|+.....| +|...+..++..+.+.+|
T Consensus       327 l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~N-lg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  327 LEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSN-LGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            34555566677888899999999999999999999987 677888888888888764

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=94.63  E-value=0.23  Score=41.99  Aligned_cols=61  Identities=13%  Similarity=0.019  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR   64 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~   64 (132)
                      +|++.+++.+.....-.+..|..+...-|++..+.-+.+...... +|.+.||+++++++++
T Consensus       106 ~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~-lGa~~gp~~g~~lils  166 (422)
T COG0738         106 FFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNG-LGAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHh
Confidence            566677777777777788899999999999888888888888754 7889999999999994

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=94.58  E-value=0.32  Score=38.96  Aligned_cols=51  Identities=8%  Similarity=-0.151  Sum_probs=36.1

Q ss_pred             HHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830           12 ELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR   64 (132)
Q Consensus        12 ~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~   64 (132)
                      ++......+......++.+| ++++.+.++.+...+ +|..+||.+.|.+.++
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        310 FFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQN-IGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHH-HHHHHHHHHHHHccCC
Confidence            33334444556666777776 578999999988765 6778888888877655

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.55  E-value=0.081  Score=45.50  Aligned_cols=68  Identities=12%  Similarity=0.036  Sum_probs=43.4

Q ss_pred             HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHH-HHHHHhhhhHHHHHHHHHH
Q 032830            9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLV-GVLQDRVNNWRETALILTA   77 (132)
Q Consensus         9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~-G~l~D~~g~~r~a~~~~~~   77 (132)
                      ++.+.......+....-++++.|++.||....+..+... +|..+|-+++ -.+.+.-..|.+.+....+
T Consensus       124 ~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~-~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i  192 (485)
T KOG0569|consen  124 LIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVV-IGILLGQVLGLPSLLGTEDLWPYLLAFPLI  192 (485)
T ss_pred             HHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHH-HHHHHHHHHccHHhcCCCcchHHHHHHHHH
Confidence            344445555556666778899999999999998887764 5655553322 1122222239999887643

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.48  E-value=0.14  Score=43.55  Aligned_cols=70  Identities=13%  Similarity=0.044  Sum_probs=52.1

Q ss_pred             hcchhHHHHHhHhhcCCC---CchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 032830           16 FATQGPVNFICLHCVKPS---IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF   87 (132)
Q Consensus        16 ~~~~~~~~~ii~~~vp~~---~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~   87 (132)
                      -....|....+.|....+   -=|...++..... .+|...||.++|.+....| ++|...+.+...++-+-++.
T Consensus       379 dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~-sla~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  379 DASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAF-SLAYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             HHHHhhhhHHhcchhhccccceeeeHHHHHHHHH-HHhhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHH
Confidence            334455555555655555   5678888888876 4799999999999999999 99999988776666555444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=94.28  E-value=0.053  Score=41.88  Aligned_cols=50  Identities=8%  Similarity=-0.033  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSS   55 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP   55 (132)
                      +....+.+++.....+.....+++.+|+++|+++.|+.+...+ +|..+||
T Consensus       303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~igP  352 (352)
T PF07690_consen  303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGS-LGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHCC
Confidence            3345556666666778888999999999999999999998876 5667776

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.21  E-value=0.15  Score=46.00  Aligned_cols=60  Identities=23%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhcchhHHH----HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830            4 FLALFAVGELLVFATQGPVN----FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR   64 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~----~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~   64 (132)
                      .+++++++.++.+.+.+|.+    ..+=|-+.++.-+.-.|+...+ .++|+++|-++++++...
T Consensus       236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~-~~lGPaiGfllgS~~l~l  299 (735)
T KOG3626|consen  236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM-AILGPAIGFLLGSFCLKL  299 (735)
T ss_pred             hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH-HHhhhHHHHHHHHHHHHe
Confidence            45566777777777777765    3555778888888889988765 589999888888877653

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=94.00  E-value=0.13  Score=43.53  Aligned_cols=69  Identities=16%  Similarity=0.075  Sum_probs=46.9

Q ss_pred             hcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHH
Q 032830           16 FATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN--NWRETALILTAILFPAAAIW   86 (132)
Q Consensus        16 ~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g--~~r~a~~~~~~~~iv~~~~~   86 (132)
                      ....+.....+..++||+++|.|+|++. .-| +|......+.-+++-..|  .|+.+..+-.+.+++..+.+
T Consensus       119 GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN-~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~  189 (417)
T COG2223         119 GASFAVGMPNASFFFPKEKQGLALGIAG-AGN-LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLA  189 (417)
T ss_pred             cceehcccccccccCChhhhhHHHHHhc-ccc-ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445667778889999999999999998 434 676665555555555555  37777776655554444443

>PRK11462 putative transporter; Provisional

Probab=93.99  E-value=0.56  Score=39.27  Aligned_cols=55  Identities=18%  Similarity=0.048  Sum_probs=38.3

Q ss_pred             HHHHHHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830           10 VGELLVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV   65 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~   65 (132)
                      +...+......|-.++...+.+ +++|++.+++.....+ +|..+++.+...+...+
T Consensus       118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~-iG~~~~~~~~~plv~~~  173 (460)
T PRK11462        118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLAT-AGGMLSTVLMMPLVNLI  173 (460)
T ss_pred             HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            3344555556777788888888 6999999998888765 56566766655555444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=93.92  E-value=0.0088  Score=51.71  Aligned_cols=60  Identities=20%  Similarity=0.201  Sum_probs=2.1

Q ss_pred             HHHHHHHHHHHHhcchhHHH----HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830            4 FLALFAVGELLVFATQGPVN----FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR   64 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~----~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~   64 (132)
                      ++.++.++.+..+.+.+|.+    +-+=|-++++.-+.-+|+...+ ..+|+++|-+++|.....
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~-~~lGPa~Gf~lg~~~L~~  203 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM-SILGPALGFLLGSFCLRI  203 (539)
T ss_dssp             ------------SSS--------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH-hhccHHHHHHHHHHHHhc
Confidence            44556666666666666655    4566888999888899988876 478999888888876643

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=93.69  E-value=0.71  Score=38.77  Aligned_cols=59  Identities=14%  Similarity=0.123  Sum_probs=43.0

Q ss_pred             HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830           22 VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus        22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ..+++-+-+|+ +-+..+|+|++... .|.++++.+.-.+..+.++||.++.+-....+++
T Consensus       120 LPslIK~~Fpk-~~~~mtglYs~sl~-~~aaLaa~lavpla~~~~gW~~aL~~WAl~allA  178 (395)
T COG2807         120 LPSLIKRDFPK-RVGLMTGLYSTSLG-AGAALAAALAVPLAQHSGGWRGALGFWALLALLA  178 (395)
T ss_pred             hhHHHHhhccc-chhhHHhHHHHHHH-HHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHH
Confidence            33555666664 58999999999986 5568888888888888755999998765444333

>PRK14778 lipoprotein signal peptidase; Provisional

Probab=93.65  E-value=0.089  Score=39.88  Aligned_cols=71  Identities=13%  Similarity=0.172  Sum_probs=39.6

Q ss_pred             hcccchHHH----HHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc--cccccccccccccCCCCccccc
Q 032830           49 FGDVPSSPL----VGVLQDRVN--NWRETALILTAILFPAAAIWFIGIFLH-SVDK--FSEDNEDKVSRIERSKTTPLLE  119 (132)
Q Consensus        49 lG~~~gP~i----~G~l~D~~g--~~r~a~~~~~~~~iv~~~~~~~~~~~~-~~~~--~~~~~e~~~~~~~~~~~~~~~~  119 (132)
                      +|+++|.++    .|++.|.+.  .|..+|.+.=+...++++++.+..++. +++.  .++..|..+.++-+|||+.++.
T Consensus        87 lGGAlGNliDRl~~G~VvDFi~~~~~p~iFNvADi~I~iGv~llll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (186)
T PRK14778         87 LGGALGNLLDRIRFGYVLDFLNLTFLPTIFNLADVFIIVGGALMILGVFRGGDNESLESRKKRRGLETGSVFEGEDTVLD  166 (186)
T ss_pred             HHHHHhhHHHHhhcCceEEEEEeccccceeEHHHHHHHHHHHHHHHHHHhcccccccccccccccccccceeccccceee
Confidence            344555543    566666544  133357776555556655555444433 2222  4466777777776677766554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=93.43  E-value=0.52  Score=38.58  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      +.+++..++.+++.+..+...++++.|+++       .++.|...|++++..+ +|..+++.+.|.+.+..|
T Consensus       316 ~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k-~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  316 WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIK-IGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhH-HHHHHHHHHHHHHHHHhC
Confidence            355667777777778888888889999887       3456899999999986 688999999999988764

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=93.33  E-value=0.12  Score=44.41  Aligned_cols=45  Identities=11%  Similarity=0.121  Sum_probs=27.8

Q ss_pred             CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830           33 SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI   78 (132)
Q Consensus        33 ~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~   78 (132)
                      .+|-.+.++.....+..|.+.+++..+..+.+++ |.+.+....+.
T Consensus       400 ~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~-~~~~f~~~~~~  444 (495)
T KOG2533|consen  400 TKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG-WGAVFYMLVAA  444 (495)
T ss_pred             HHhHHHHhhhhcchhHHHHhhhhhcccccCcchh-hhhHHHHHHHH
Confidence            3444555555555555555556666677777778 88888665433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=93.17  E-value=0.73  Score=38.46  Aligned_cols=53  Identities=4%  Similarity=-0.087  Sum_probs=34.1

Q ss_pred             HHHHHHhcchhHHHHHhHhhc-CCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830           10 VGELLVFATQGPVNFICLHCV-KPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD   63 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~v-p~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D   63 (132)
                      +..++......|..++..++. ++++|....+......+ +|....+.+...+.+
T Consensus       115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~-ig~~~~~~~~~~~~~  168 (473)
T PRK10429        115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFAS-LAGFVTAGFTLPFVN  168 (473)
T ss_pred             HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            344455566678888889988 48999999988555544 343444444444433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=92.98  E-value=0.4  Score=40.10  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcC--CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVK--PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI   78 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp--~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~   78 (132)
                      ..+++++..+..+.....+-++..+...  |+.|+.-.+..... +.+|.+++..+.|.+.|..+ .+..|.+...+
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~-~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~  163 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGV-RSVGSLVGSLLSGPLLDSFG-PQGVFLISAAL  163 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHH-HHHHHHHHHHhhhhhhhcCC-CeEEehHHHHH
Confidence            3445555666666666666666666653  33366766666665 45788999999999999988 88888776433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PTZ00207 hypothetical protein; Provisional

Probab=92.85  E-value=0.24  Score=43.54  Aligned_cols=80  Identities=6%  Similarity=-0.073  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhc-ccchHHHHHHHHHhhh----h--------HHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFG-DVPSSPLVGVLQDRVN----N--------WRETA   72 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG-~~~gP~i~G~l~D~~g----~--------~r~a~   72 (132)
                      +..++.+++.+..++....++..++. ++-|.-.-+..+... +| .++.-.++|.+=|+-.    +        ++..|
T Consensus       457 ~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~p-igs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~  534 (591)
T PTZ00207        457 LPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSV-LSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL  534 (591)
T ss_pred             HHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence            34456666667777777788888888 777776665555432 33 2223445677777532    1        88888


Q ss_pred             HHHHHHHHHHHHHHH
Q 032830           73 LILTAILFPAAAIWF   87 (132)
Q Consensus        73 ~~~~~~~iv~~~~~~   87 (132)
                      .++..+++.+.++-.
T Consensus       535 ~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        535 AFLLGLSFLAFITST  549 (591)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888777776665544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=92.45  E-value=0.43  Score=40.40  Aligned_cols=64  Identities=14%  Similarity=0.069  Sum_probs=44.4

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh--hhHHHHHHHHH
Q 032830           10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV--NNWRETALILT   76 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~--g~~r~a~~~~~   76 (132)
                      +.++..+.........+.++.|++.|+...++..+... +|...| .+.|+..++.  + ||..+.+..
T Consensus       151 l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~-~Gi~~~-~~~~~~~~~~~~~-Wr~~~~~~~  216 (513)
T KOG0254|consen  151 LTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFIT-IGILLG-YCINYGTSKVYAG-WRIPLGLAL  216 (513)
T ss_pred             HhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHH-HHHHHH-HHHhhhhccCCcc-HHHHHHHHH
Confidence            33444444444555677789999999999999999886 786667 5556666543  6 997766653

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=91.85  E-value=1.6  Score=31.56  Aligned_cols=64  Identities=17%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             HHHHHhcchhHHHHHhHhhcCC-CCchHHHHHHHHHHHhhcccchHHHHHHHHHh--hhhHHHHHHHH
Q 032830           11 GELLVFATQGPVNFICLHCVKP-SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR--VNNWRETALIL   75 (132)
Q Consensus        11 ~~~~~~~~~~~~~~ii~~~vp~-~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~--~g~~r~a~~~~   75 (132)
                      .++......+.....+.+..|+ +.|+...++.......+|...+|.+.+.+.+.  .+ |++.+...
T Consensus       104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  170 (338)
T COG0477         104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFLLA  170 (338)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHH
Confidence            3444445556677888899888 67888888887743456778898888888776  34 88855443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=91.83  E-value=0.74  Score=39.53  Aligned_cols=63  Identities=6%  Similarity=-0.054  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN   66 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g   66 (132)
                      +.++..++..+......+--++++.|.+.       .+.-|...|++++..+ +|.+++-.+.|++.+..|
T Consensus       329 l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K-~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         329 LIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRK-LGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            34444566677777777778888887765       3445688888888865 788999999999988764

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=91.74  E-value=0.44  Score=41.10  Aligned_cols=33  Identities=12%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHH
Q 032830           24 FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPL   57 (132)
Q Consensus        24 ~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i   57 (132)
                      .-+.+..-+++|.+|.+..+... ++|.++||.+
T Consensus       152 ~Y~a~~s~~~dR~rA~a~~~~~~-vlg~ilGp~~  184 (488)
T KOG2325|consen  152 AYIADASTVEDRPRAFAATSGGF-VLGIILGPTI  184 (488)
T ss_pred             HHHHhccCccchHHHHHHhhhHH-HHHHHHhHHH
Confidence            46667667788888888766632 3455555554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=91.62  E-value=2  Score=35.22  Aligned_cols=41  Identities=15%  Similarity=-0.145  Sum_probs=29.4

Q ss_pred             CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830           32 PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus        32 ~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      +..++++.+++++... .+..+++...|++.+. + -++.|...
T Consensus       342 ~~~~G~a~a~~~~~~~-~~~~~~~~~~g~~~~~-~-~~~~~~~~  382 (413)
T PRK15403        342 NLPKGTVSASLNMVIL-MVMAVSVEIGRWLWFN-G-GRLPFHLL  382 (413)
T ss_pred             CCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHc-C-CchHHHHH
Confidence            3458999999988864 4557789999998887 3 45555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.53  E-value=2.1  Score=36.73  Aligned_cols=55  Identities=7%  Similarity=-0.074  Sum_probs=41.8

Q ss_pred             HHHHHHHHhcchh-HHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830            8 FAVGELLVFATQG-PVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD   63 (132)
Q Consensus         8 ~~l~~~~~~~~~~-~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D   63 (132)
                      ......++....+ .-++...|++..++-.+-.++..+..+ +|...||.+..++++
T Consensus       135 Yv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~gan-lg~i~sg~~~~~~~~  190 (472)
T TIGR00769       135 YVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGAN-VALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            3334444444444 567888899999999999999999987 677889988888874

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=91.34  E-value=1.6  Score=34.46  Aligned_cols=37  Identities=8%  Similarity=-0.014  Sum_probs=23.9

Q ss_pred             HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHH
Q 032830           22 VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVG   59 (132)
Q Consensus        22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G   59 (132)
                      ....+.+..| +.++++.++.+.....+|...|+++.+
T Consensus       308 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        308 AMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344556555 789999999877655555555665533

>PF12832 MFS_1_like: MFS_1 like family

Probab=90.66  E-value=3.1  Score=26.67  Aligned_cols=59  Identities=17%  Similarity=0.214  Sum_probs=33.1

Q ss_pred             HHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830           13 LLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI   74 (132)
Q Consensus        13 ~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~   74 (132)
                      ++...+..|-..+-.+.  ...-+.-+|+...+..+.. .++|++.|+++|+++..+..+..
T Consensus        13 f~~~g~~~Pfl~~~~~~--~Gl~~~~iGil~~i~~~~~-~~~~pl~g~laDk~~~~~~~l~~   71 (77)
T PF12832_consen   13 FAALGCLYPFLPLYLKQ--LGLSPSQIGILSAIRPLIR-FLAPPLWGFLADKFGKRKVILLG   71 (77)
T ss_pred             HHHHHHHHhhhhHhhhh--cCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCccHHHHHH
Confidence            33333444444444332  2333455555555544443 67899999999999855554443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=90.58  E-value=2.4  Score=36.62  Aligned_cols=63  Identities=16%  Similarity=0.100  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHhcchhH-HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh
Q 032830            4 FLALFAVGELLVFATQGP-VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN   67 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~-~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~   67 (132)
                      .++++++..+....+.+| .+-+..+.+|++.|+.|.++..+++. +...+-...+-.+.+.+|.
T Consensus       370 ~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w-~~~fiv~~~fp~l~~~~g~  433 (485)
T KOG0569|consen  370 CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNW-LSNFIVGFAFPPLQNVIGP  433 (485)
T ss_pred             HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            344445555555555445 55788999999999999998888754 4444444555556666673

>TIGR00901 2A0125 AmpG-related permease

Probab=90.54  E-value=0.7  Score=36.39  Aligned_cols=41  Identities=7%  Similarity=-0.079  Sum_probs=32.5

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIH   47 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~   47 (132)
                      +.++.+++.....++....+++.+|+++|++..|+++...+
T Consensus       315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       315 TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            34444566666778888999999999999999999887654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=89.92  E-value=0.81  Score=36.02  Aligned_cols=42  Identities=10%  Similarity=-0.019  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIH   47 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~   47 (132)
                      .+..++++.......+.......+-+| ++||.++|+.-....
T Consensus       100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~G  141 (250)
T PF06813_consen  100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFG  141 (250)
T ss_pred             HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHH
Confidence            333444444444444555555667787 579999998766543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=89.76  E-value=2.5  Score=36.33  Aligned_cols=60  Identities=15%  Similarity=0.061  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV   65 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~   65 (132)
                      ++...+...+-.....|-.++...+.+ +++|.+..+..+...+ +|..+...+.+.++..+
T Consensus       116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~-~g~~l~~~~~~plv~~~  176 (467)
T COG2211         116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFAS-LGGLLVAVLFPPLVKLF  176 (467)
T ss_pred             HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            333444445555566777777777777 5999999998888765 56566655566666554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=89.59  E-value=3.6  Score=34.78  Aligned_cols=63  Identities=14%  Similarity=-0.062  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV   65 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~   65 (132)
                      +++-...++.++............+++..++++.|..+|.|..... .+-.+|-.+.|.+.|-.
T Consensus       302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA-~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQA-IARGLGTFLGGALRDLV  364 (403)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            3556667777788788888888999999999999999999999864 67789999999999964

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=88.63  E-value=1.7  Score=37.17  Aligned_cols=81  Identities=14%  Similarity=0.056  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCC--CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKP--SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN-WRETALILTAILF   80 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~--~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~-~r~a~~~~~~~~i   80 (132)
                      .++++++.|+.-+...+.=++++.+..|+  +..|.-+|+.++++ .++.++..+..|.+.+.+|+ -.+++.+.++..+
T Consensus       383 ~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I-~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~  461 (477)
T TIGR01301       383 ALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAI-VIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAF  461 (477)
T ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHH-HHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHH
Confidence            34455555555555556666788888885  44599999999987 57888888888886666652 5556666565555


Q ss_pred             HHHHH
Q 032830           81 PAAAI   85 (132)
Q Consensus        81 v~~~~   85 (132)
                      ++++.
T Consensus       462 ~aa~~  466 (477)
T TIGR01301       462 VSGLL  466 (477)
T ss_pred             HHHHH
Confidence            55544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=88.22  E-value=3  Score=32.59  Aligned_cols=35  Identities=14%  Similarity=0.169  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830           38 SMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI   74 (132)
Q Consensus        38 a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~   74 (132)
                      ..++..... .++..++.++.|+++|++| -|..+..
T Consensus        38 ~~~~~~~~~-~~~~~~~~~~~g~l~dr~g-~r~~~~~   72 (366)
T TIGR00886        38 QLGNLVAVP-VLAGAVLRIILGFLVDKFG-PRYTTTL   72 (366)
T ss_pred             HhhHhhHHH-HHHHHHHHHHHHHHHHHhC-chHHHHH
Confidence            344444333 4567889999999999998 5555544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=88.04  E-value=1.2  Score=37.80  Aligned_cols=35  Identities=11%  Similarity=0.119  Sum_probs=25.4

Q ss_pred             cccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830           50 GDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   85 (132)
Q Consensus        50 G~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~   85 (132)
                      --.+||+++|.+.+..+ .+.+..+.....+++..+
T Consensus       161 ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHH
Confidence            34679999999999888 777776665555555443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=87.13  E-value=7.1  Score=33.70  Aligned_cols=55  Identities=9%  Similarity=-0.020  Sum_probs=38.3

Q ss_pred             HHHHHHHHhcchh-HHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830            8 FAVGELLVFATQG-PVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD   63 (132)
Q Consensus         8 ~~l~~~~~~~~~~-~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D   63 (132)
                      .+.+...+....+ --|...-++++.++-.+-.++..+..| +|.+.+..+.-++++
T Consensus       150 Yv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~gan-igli~sG~~~~~~~~  205 (491)
T PF03219_consen  150 YVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGAN-IGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            3333433333333 246777788888999999999999887 566777777777777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=86.61  E-value=0.39  Score=33.92  Aligned_cols=7  Identities=14%  Similarity=0.155  Sum_probs=3.9

Q ss_pred             HHHHHHH
Q 032830           69 RETALIL   75 (132)
Q Consensus        69 r~a~~~~   75 (132)
                      ||+++++
T Consensus         1 RW~l~~i    7 (130)
T PF12273_consen    1 RWVLFAI    7 (130)
T ss_pred             CeeeHHH
Confidence            4666554

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF15061 DUF4538: Domain of unknown function (DUF4538)

Probab=86.07  E-value=0.27  Score=30.47  Aligned_cols=36  Identities=14%  Similarity=0.304  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-Hhhccccccccc
Q 032830           68 WRETALILTAILFPAAAIWFIGIF-LHSVDKFSEDNE  103 (132)
Q Consensus        68 ~r~a~~~~~~~~iv~~~~~~~~~~-~~~~~~~~~~~e  103 (132)
                      ||++.++.+++.++++.++.+... +...+.|+++.+
T Consensus         5 ~r~~~~~ggfVg~iG~a~Ypi~~~Pmm~~eeYk~~Q~   41 (58)
T PF15061_consen    5 WRYALFVGGFVGLIGAALYPIYFRPMMNPEEYKKEQK   41 (58)
T ss_pred             ccchhhHHHHHHHHHHHHhhhhcccccChHHHHHHHH
Confidence            999999988888888888776543 334444544333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=84.50  E-value=6.2  Score=33.37  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=36.7

Q ss_pred             HHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032830           40 AISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG   89 (132)
Q Consensus        40 gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~   89 (132)
                      +....... +|...|.++.|.++|.+| -|..+.+..+..+++.++...+
T Consensus        92 s~~~s~~~-lga~~g~l~~g~l~d~~G-Rk~~l~~~~~~~~iG~ii~~~a  139 (513)
T KOG0254|consen   92 GLLTSILN-LGALVGSLLAGRLGDRIG-RKKTLLLAVVLFLIGAIIIALA  139 (513)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHh
Confidence            45555443 667889999999999999 9999998887777776665543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=83.91  E-value=0.83  Score=39.05  Aligned_cols=52  Identities=10%  Similarity=0.118  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHH
Q 032830            6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLV   58 (132)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~   58 (132)
                      ++++.+-+|..+.....+.-.-.++|...|+++.|..+-+.++ |.++.|.|.
T Consensus       439 vllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRI-ggI~~p~iA  490 (528)
T KOG0253|consen  439 VLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARI-GGIFSPVIA  490 (528)
T ss_pred             HHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhh-hhhhhhHHH
Confidence            3444444555555555555566889999999999999998874 669999987

>PRK09848 glucuronide transporter; Provisional

Probab=83.89  E-value=11  Score=30.97  Aligned_cols=51  Identities=8%  Similarity=-0.078  Sum_probs=28.3

Q ss_pred             HHHHHHhcchhHHHHHhHhhcCC-CCchHHHHHHHHHHH----hhcccchHHHHHH
Q 032830           10 VGELLVFATQGPVNFICLHCVKP-SIRPLSMAISTVSIH----IFGDVPSSPLVGV   60 (132)
Q Consensus        10 l~~~~~~~~~~~~~~ii~~~vp~-~~R~~a~gi~~l~~~----llG~~~gP~i~G~   60 (132)
                      +.+.+.....+|.+++....+++ ++|....++.....+    .+|...+|.+.+.
T Consensus       118 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        118 GLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444445556666665655554 678887766553322    2444556665543

>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families

Probab=82.92  E-value=2.2  Score=36.03  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=21.8

Q ss_pred             cchHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032830           52 VPSSPLVGVLQDRVNN----WRETALILTAILFPAAAIWFIGIFLHSVD   96 (132)
Q Consensus        52 ~~gP~i~G~l~D~~g~----~r~a~~~~~~~~iv~~~~~~~~~~~~~~~   96 (132)
                      .+.++..|.+.|..|.    .+|.....+...+...+.+++..+++|.+
T Consensus       195 ~~n~i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~~~~~~~l~~~~  243 (471)
T PF00939_consen  195 APNLIAAGFLESATGISISFLDWFIYALPPGIIMLVLMWLILYKLFKPD  243 (471)
T ss_pred             CchHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3456777888765432    55555544433333333333333444433

One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=82.48  E-value=18  Score=31.19  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=41.5

Q ss_pred             HhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032830           25 ICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG   89 (132)
Q Consensus        25 ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~   89 (132)
                      .+.+.+| |++.+.-+|-+....++.-.... .+.+.+..++| |+.+..+++++.++.++.|+..
T Consensus       306 ~lk~~~~~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~G-W~~~AlitPiv~lit~~~FF~~  369 (491)
T PF03219_consen  306 QLKQLYPDPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFG-WRTAALITPIVILITGLLFFGF  369 (491)
T ss_pred             HHHHHCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-HHHHHHHhHHHHHHHHHHHHHH
Confidence            4445556 45666666666665554332223 66788999999 9999999887777766655543

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK14794 lipoprotein signal peptidase; Provisional

Probab=82.09  E-value=1.9  Score=30.98  Aligned_cols=54  Identities=13%  Similarity=0.234  Sum_probs=27.8

Q ss_pred             CCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhh----hHHH-HHHHHHHHHHHHHHHHHHHH
Q 032830           33 SIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVN----NWRE-TALILTAILFPAAAIWFIGI   90 (132)
Q Consensus        33 ~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g----~~r~-a~~~~~~~~iv~~~~~~~~~   90 (132)
                      +.+....++..+    +|+++|.++    .|++.|.++    +|+| +|.+.=....++++++.+..
T Consensus        58 ~~~~~~i~l~lI----~gGaiGNliDR~~~G~VvDfi~~~~~~~~~pvFNvAD~~I~iGv~lll~~~  120 (136)
T PRK14794         58 RHKGEAIAYSLI----LGGAMGNLIDRVFRGYVVDSFDFYWRDWHWPAFNLADIAIVLGALLFVSSS  120 (136)
T ss_pred             cchHHHHHHHHH----HHHHHHhHHHHHhcccCCceEEEeecCCCCceeeHHHHHHHHHHHHHHHHH
Confidence            334444554433    344555544    677777642    2444 66676555555554444433

>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function

Probab=81.81  E-value=3.7  Score=26.81  Aligned_cols=36  Identities=17%  Similarity=0.167  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 032830           68 WRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNE  103 (132)
Q Consensus        68 ~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~e  103 (132)
                      +-|.-.+.+.++++.++.+.....+||-||.|+..+
T Consensus        38 ~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV~p   73 (77)
T PF11118_consen   38 SLWLQFLAGLLLFAIGVGFIAGFILHRDRKRNKVQP   73 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhheeeccccccch
Confidence            445555566666666666666667887766666544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=81.45  E-value=7.7  Score=33.17  Aligned_cols=53  Identities=13%  Similarity=-0.029  Sum_probs=40.8

Q ss_pred             HhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhH
Q 032830           15 VFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNW   68 (132)
Q Consensus        15 ~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~   68 (132)
                      +....+...+.+...+.++++|.+.++...+.. +....+|.+.+.+.-.+.+|
T Consensus       344 ~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~-l~~~~~~~~~~~i~~~t~~~  396 (463)
T KOG2816|consen  344 AGIVFPAIRAFASILVSPEEQGKVFGIISGIEG-LSGVVSPALYGNIFALTLDD  396 (463)
T ss_pred             hcchhHHHHhHHHhhcccccccchhhHHHHHHH-HhhhhhHHHHHHHHHHHHHh
Confidence            344445566788999999999999999998865 55688999998886655333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=81.42  E-value=6.9  Score=32.86  Aligned_cols=59  Identities=8%  Similarity=0.163  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD   63 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D   63 (132)
                      .+++..++.++...+....+......+|...|.++.+......+ +|.+.+|.+.-....
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~-~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  409 HWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAAR-LGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence            44555566666666777777788899999999999999999875 677888887755444

>PRK14772 lipoprotein signal peptidase; Provisional

Probab=80.59  E-value=2  Score=32.61  Aligned_cols=51  Identities=12%  Similarity=0.084  Sum_probs=23.3

Q ss_pred             HHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCcc
Q 032830           59 GVLQDRVN--NWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTP  116 (132)
Q Consensus        59 G~l~D~~g--~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  116 (132)
                      |+++|.+.  +| .+|.+.=+...++++++.+..++  .    .+++.++...++|+||+
T Consensus       136 G~VvDFi~~~~~-pvFNvADi~I~iGvillli~~~~--~----~~~~~~~~~~~~~~~~~  188 (190)
T PRK14772        136 GHVVDFIQLPNF-AIFNIADSAVVSGVVIICLLTLR--G----VSLDGTRHRGSKDGEDA  188 (190)
T ss_pred             ceEEEeeecCCC-ceeeHHHHHHHHHHHHHHHHHHh--c----cCccccccccccCCCCC
Confidence            66666543  13 35666544444454443333221  1    11222444456666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.77
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.74
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.69
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.46
2xut_A	524	Proton/peptide symporter family protein; transport	98.38
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.29
2xut_A	524	Proton/peptide symporter family protein; transport	98.12
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.05
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.45
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.34
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.23
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.54

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.77  E-value=1.6e-08  Score=79.86  Aligned_cols=80  Identities=10%  Similarity=0.030  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP   81 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv   81 (132)
                      +.+++..++.+++.+...+...+.+.+++|+++|++++++.....+ +|..+||.+.|++.+.+|+||+.|++.++..++
T Consensus       120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~  198 (451)
T 1pw4_A          120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN-VGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL  198 (451)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH-HHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3456667777888888888899999999999999999999998875 788999999999998876699999887654444


Q ss_pred             H
Q 032830           82 A   82 (132)
Q Consensus        82 ~   82 (132)
                      .
T Consensus       199 ~  199 (451)
T 1pw4_A          199 V  199 (451)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.74  E-value=4.9e-08  Score=77.00  Aligned_cols=83  Identities=13%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      .++++++.+++.....+..+..+++.+|+++|++++|+++...+++|..++|.+.|++.|++| |++.|.+..+..+++.
T Consensus       349 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~  427 (451)
T 1pw4_A          349 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAV  427 (451)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHH
Confidence            344555566666666667778999999999999999999998764388999999999999999 9999988776666555


Q ss_pred             HHHH
Q 032830           84 AIWF   87 (132)
Q Consensus        84 ~~~~   87 (132)
                      +++.
T Consensus       428 ~~~~  431 (451)
T 1pw4_A          428 ILLI  431 (451)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.69  E-value=1.2e-07  Score=76.09  Aligned_cols=81  Identities=12%  Similarity=0.088  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCC--chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSI--RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF   80 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~--R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~i   80 (132)
                      .+++..++.+++.+...+.....+.+++|+++  |+.+.+++....+ +|..+||.+.|++.|+.| ||+.|++..+..+
T Consensus       110 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~  187 (491)
T 4aps_A          110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGIN-LGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMF  187 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHH-HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Confidence            45556667777777777888899999999999  7778887888765 788999999999999999 9999998765555


Q ss_pred             HHHHH
Q 032830           81 PAAAI   85 (132)
Q Consensus        81 v~~~~   85 (132)
                      ++.++
T Consensus       188 ~~~~~  192 (491)
T 4aps_A          188 IGLLV  192 (491)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.46  E-value=8e-07  Score=69.90  Aligned_cols=65  Identities=12%  Similarity=0.008  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH-Hhhhh
Q 032830            2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ-DRVNN   67 (132)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~-D~~g~   67 (132)
                      +.+++..++.+++.+...++....+.+++|+++|+.++++.....+ +|..+||.+.|++. +..++
T Consensus       118 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~~~~  183 (438)
T 3o7q_A          118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS-FGAIIAVVFGQSLILSNVPH  183 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH-HHHHHHHHHTTHHHHTSSCC
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccc
Confidence            3455666777777788888889999999999999999999999875 78899999999999 55544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.38  E-value=1.2e-06  Score=71.06  Aligned_cols=78  Identities=17%  Similarity=0.050  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHH---HHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAI---STVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL   79 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi---~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~   79 (132)
                      .+++..++.+++.+...+...+.+.+++|+++|+++.++   +....+ +|..+||.+.|++.|+.| |++.|.+.++..
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~  188 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTIN-FGSFFASLSMPLLLKNFG-AAVAFGIPGVLM  188 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHH-HHHHHHHHTSTHHHHTSC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence            345556667777778888889999999999999877776   776655 678999999999999989 999998876544


Q ss_pred             HHH
Q 032830           80 FPA   82 (132)
Q Consensus        80 iv~   82 (132)
                      +++
T Consensus       189 ~~~  191 (524)
T 2xut_A          189 FVA  191 (524)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.29  E-value=3.5e-07  Score=71.00  Aligned_cols=75  Identities=13%  Similarity=0.095  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL   79 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~   79 (132)
                      .+++..++.+++.....+.....+.+.+|+++|++++++...... +|...||.+.|++.|++| ||+.+.+.++..
T Consensus        90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  164 (375)
T 2gfp_A           90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGIL-VSPLLAPLIGGLLDTMWN-WRACYLFLLVLC  164 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHH-HHHHHHHHHHHHSSCHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHhcc-HHHHHHHHHHHH
Confidence            344455566666677777888899999999999999999998875 688999999999999989 999998765443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.12  E-value=1.9e-06  Score=69.84  Aligned_cols=60  Identities=8%  Similarity=-0.016  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830            5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV   65 (132)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~   65 (132)
                      ++..++.+++.....++.+..+.+.+|+++|++++|++++..+ +|..+||.+.|++.|..
T Consensus       409 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~g~~~~g~~~~~~  468 (524)
T 2xut_A          409 ILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT-VGNLWVLLANVSVKSPT  468 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH-HHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Confidence            3344555555555667777889999999999999999998865 68899999999998854

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.05  E-value=1.5e-06  Score=69.30  Aligned_cols=64  Identities=8%  Similarity=-0.010  Sum_probs=49.9

Q ss_pred             hhHHHHHhHhhcCCCCchHHHHHH-HHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830           19 QGPVNFICLHCVKPSIRPLSMAIS-TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA   84 (132)
Q Consensus        19 ~~~~~~ii~~~vp~~~R~~a~gi~-~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~   84 (132)
                      .++.+..+.+..|++.|+++.++. +... .+|..+||++.|++.|++| ++..|.+.++..+++.+
T Consensus       330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~  394 (417)
T 2cfq_A          330 LVGCFKYITSQFEVRFSATIYLVCFCFFK-QLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTL  394 (417)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHTTTH-HHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-hHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHH
Confidence            345567888999999999999984 5554 4677899999999999988 88888877655555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.00  E-value=4.6e-06  Score=66.82  Aligned_cols=78  Identities=9%  Similarity=-0.048  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   83 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~   83 (132)
                      .++.+++.++......++.+..+.+.+|+++|++++|++++..+ +|..++|.+.|++.|. + +.+.+.+.+...++++
T Consensus       389 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~  465 (491)
T 4aps_A          389 LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS-VGSALNAQLVTLYNAK-S-EVAYFSYFGLGSVVLG  465 (491)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH-HHHHHHHHHGGGGGGS-S-TTHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHH
Confidence            34455566666667678888999999999999999999988865 6889999999988775 4 5555655544444443


Q ss_pred             H
Q 032830           84 A   84 (132)
Q Consensus        84 ~   84 (132)
                      +
T Consensus       466 ~  466 (491)
T 4aps_A          466 I  466 (491)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.45  E-value=0.00019  Score=56.11  Aligned_cols=66  Identities=12%  Similarity=0.165  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830            7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      .+.+.+++.....+..+....+.+|++ ++.+.++.. . +.+|..++|.+.|++.|++|++++.|.+.
T Consensus       353 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  418 (438)
T 3o7q_A          353 ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-M-TIIGGGIVTPVMGFVSDAAGNIPTAELIP  418 (438)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-H-TTHHHHHHHHHHHHHHHHHTSSGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-H-HHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            344555666666677778878999976 899998876 3 35788999999999999998788888764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.34  E-value=0.0008  Score=53.56  Aligned_cols=44  Identities=11%  Similarity=0.044  Sum_probs=34.3

Q ss_pred             hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830           20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR   64 (132)
Q Consensus        20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~   64 (132)
                      +..+....+++|.+.|++++|+.....+ +|..++|.++..+.+.
T Consensus       389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~-~~~~i~~~~~p~l~~~  432 (491)
T 4gc0_A          389 PVCWVLLSEIFPNAIRGKALAIAVAAQW-LANYFVSWTFPMMDKN  432 (491)
T ss_dssp             HHHHHHHHHSSCTTTHHHHHHHHHHHHH-HHHHHHHTHHHHHCHH
T ss_pred             HHHHHHHHHhCCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            3456788899999999999999988866 4557777777766553

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.23  E-value=0.00018  Score=55.52  Aligned_cols=69  Identities=10%  Similarity=-0.140  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL   75 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~   75 (132)
                      +++..++.+++.....+.....+++.+| ++|+++.|+.+...+ +|..++|.+.|++.|..+ ++..+.+.
T Consensus       294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~~-~~~~~~~~  362 (375)
T 2gfp_A          294 LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQN-IGSGVLASLSAMLPQTGQ-GSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHH-HHHHCCSTTCTHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHH-HHHHHHHHHHHHHhcCCc-ccHHHHHH
Confidence            3344556666666777888888999998 899999999998865 677999999999998877 88777764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.54  E-value=0.00078  Score=53.66  Aligned_cols=71  Identities=14%  Similarity=0.104  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh-------hHHHHHHHH
Q 032830            4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN-------NWRETALIL   75 (132)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g-------~~r~a~~~~   75 (132)
                      +++.=++.++..+...+.....+.++.|+++|++..++...... +|...++.+...+.+..+       .||+.+...
T Consensus       129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4gc0_A          129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAII-FGQLLVYCVNYFIARSGDASWLNTDGWRYMFASE  206 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhh-hhhhhhhhcchhhccccccccccchhhHHHhhhh
Confidence            34444566666667777788899999999999999999988764 676777777666665421       266666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.88
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.86
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.73
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	92.29

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=4.3e-09  Score=80.47  Aligned_cols=83  Identities=13%  Similarity=0.145  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      +.++++++.++......+..+....+.+|++.|++++|+.++..++.|...+|++.|++.|++| |+..+.+.....+++
T Consensus       345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~  423 (447)
T d1pw4a_         345 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILA  423 (447)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence            3444555556666666677778889999999999999999888776677789999999999999 999988776555555


Q ss_pred             HHHH
Q 032830           83 AAIW   86 (132)
Q Consensus        83 ~~~~   86 (132)
                      .+++
T Consensus       424 ~~~~  427 (447)
T d1pw4a_         424 VILL  427 (447)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2.8e-09  Score=79.15  Aligned_cols=81  Identities=9%  Similarity=-0.016  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      ..+++..+.+++.....++....+++.+|++.|+++.++.....+.+|..++|++.|++.|++| +++.+.+.++..++.
T Consensus       314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~  392 (417)
T d1pv7a_         314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGF  392 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHH
Confidence            3445556667777777788889999999999999999986544445788899999999999999 999998876555444


Q ss_pred             HH
Q 032830           83 AA   84 (132)
Q Consensus        83 ~~   84 (132)
                      ++
T Consensus       393 ~~  394 (417)
T d1pv7a_         393 TL  394 (417)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.5e-08  Score=77.42  Aligned_cols=79  Identities=10%  Similarity=0.039  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830            3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   82 (132)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~   82 (132)
                      .+++..++.+++.+...++...++.+++|+++|++++++++.... +|..++|.+.+.+.+..++||+.+++..+..++.
T Consensus       118 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  196 (447)
T d1pw4a_         118 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN-VGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV  196 (447)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH-HHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccc-hhhhhhhhhhhhHhhhhhcccccchhhhhhHHHH
Confidence            445556677777777888888999999999999999999998875 6789999999998888766999998875444333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.27  Score=34.62  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             hHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830           36 PLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI   74 (132)
Q Consensus        36 ~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~   74 (132)
                      ....|+...+. .++..++.++.|+++|++| -|..+.+
T Consensus        42 ~~~~g~i~s~~-~l~~~i~~~~~G~l~Dr~g-rr~~l~~   78 (417)
T d1pv7a_          42 KSDTGIIFAAI-SLFSLLFQPLFGLLSDKLG-LRKYLLW   78 (417)
T ss_dssp             HHHHHHHHHHH-HHHHHHTHHHHHHHHHHHT-TCTHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-chHHHHH
Confidence            34455554443 3566778888999999999 5555443