Citrus Sinensis ID: 032862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSWKKTL
Secondary Structure (PSIPRED)
ccccEEEEEEEccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHcccccccHccHHHHHHHHHHHHHHHHHHccHHHcc
Coil and Loop (DISEMBL)
MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRqllpvadmiPLVLQKIAyhethpdcseviskipwpivrvrdilqpksggdcGVFLLRYLEVLAHgldvnsycqQDHVTQFRQALAVKLFGhrswkktl
Flexible Loop (DISEMBL)
MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSWKKTL
Low Complexity Region (SEG)
MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSWKKTL
Disordered region (IsUnstruct)
***HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRS*****
Disordered Region (DISOPRED)
MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSWKK**
Disordered Region (DISEMBL)
MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSWKKTL
Disordered Region (DISPRO)
*NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSWK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSWKKTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q94F30	489	Ubiquitin-like-specific p	no	no	0.818	0.220	0.288	3e-05

>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 4   HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
           HW L V++    K+   DS             L  V  MI   L K    E +    + I
Sbjct: 380 HWTLAVINNRESKLLYLDS-------------LNGVDPMILNALAKYMGDEANEKSGKKI 426

Query: 64  SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYC-QQDHVTQFRQALAVKL 122
               W +  V D+ Q K+G DCG+F+L+Y++  + GL +   C  Q+H+  FR   A ++
Sbjct: 427 DANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGL---CFSQEHMPYFRLRTAKEI 483

Query: 123 FGHRS 127
              R+
Sbjct: 484 LRLRA 488

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
449509363	421	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.893	0.280	0.322	1e-12
449462703	418	PREDICTED: uncharacterized protein LOC10	0.909	0.287	0.325	2e-12
46398240	423	Ulp1-like peptidase [Cucumis melo] gi|51	0.916	0.286	0.298	3e-12
449468674	314	PREDICTED: uncharacterized protein LOC10	0.909	0.382	0.317	1e-11
147778025	701	hypothetical protein VITISV_042738 [Viti	0.886	0.166	0.333	5e-11
449437278	418	PREDICTED: uncharacterized protein LOC10	0.916	0.289	0.290	1e-08
147800488	183	hypothetical protein VITISV_011864 [Viti	0.818	0.590	0.316	2e-08
15242433	921	Ulp1 protease family protein [Arabidopsi	0.863	0.123	0.295	6e-08
12320743	1201	hypothetical protein [Arabidopsis thalia	0.871	0.095	0.267	2e-07
7267288	1312	putative protein [Arabidopsis thaliana]	0.871	0.087	0.267	3e-07

>gi|449509363|ref|XP_004163567.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225160, partial [Cucumis sativus]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 3   DHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEV 62
           +HW+L  +D++  ++ ++DS+  LT    +   L+P+ +M+P +L    +       S  
Sbjct: 298 NHWILLCLDLVSCQVKVWDSLPSLTSAEDMRSILMPIREMVPNLLNTTEFFVRRGRSS-- 355

Query: 63  ISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKL 122
             K PWP+V V  I   ++  DCGVF ++Y E  A GLDV + CQ++ ++ FR+ L  +L
Sbjct: 356 THKEPWPLVIVDSIPLXRNNSDCGVFTIKYFEYEASGLDVATLCQEN-MSYFRKQLTFQL 414

Query: 123 F 123
           +
Sbjct: 415 W 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462703|ref|XP_004149080.1| PREDICTED: uncharacterized protein LOC101212094 [Cucumis sativus]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 3   DHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEV 62
           +HW+L  +D++  ++ ++DS+  LT    +   L P+ +M+P +L    +       S  
Sbjct: 295 NHWILLCLDLVRCQVKVWDSLPSLTSAEDMRSILEPIQEMVPNLLDATGFFVRRGGSS-- 352

Query: 63  ISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKL 122
             K PWP+V V  I   ++  DCGVF ++Y E  A GLDV + CQ++ ++ FR+ LA +L
Sbjct: 353 THKEPWPLVIVDSIPLQRNNSDCGVFTIKYFEYEASGLDVATLCQEN-MSYFRKQLAFQL 411

Query: 123 FGH 125
           + +
Sbjct: 412 WTN 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46398240|gb|AAS91798.1| Ulp1-like peptidase [Cucumis melo] gi|51477401|gb|AAU04774.1| Ulp1 peptidase-like [Cucumis melo]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 3   DHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEV 62
           +HWVL  +D++  ++ ++DS+  LT    +   LLP+  ++P +L    + +     S  
Sbjct: 296 NHWVLLCLDLVSCQVKVWDSLPSLTTAEEMTNILLPIRQLVPKLLDSTGFFDRRGRSSTY 355

Query: 63  ISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKL 122
             K PWP+V V  I   ++  DCGVF ++Y E +A G+ +++ CQ++ ++ FR+ LA ++
Sbjct: 356 --KEPWPVVIVDPIPLQRNNCDCGVFAIKYFEYIAAGVGLDTLCQEN-MSYFRKQLAFQV 412

Query: 123 FGHR 126
           + ++
Sbjct: 413 WTNQ 416

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468674|ref|XP_004152046.1| PREDICTED: uncharacterized protein LOC101216923 [Cucumis sativus]

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 3   DHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEV 62
           +HW+L  +D++  ++ ++DS+  LT    +   L+ + +M+P +L    +       S  
Sbjct: 191 NHWILLCLDLVRCQVKVWDSLPSLTSVEDMRSILMSIREMVPNLLDTTGFFVRRGGSS-- 248

Query: 63  ISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKL 122
             K PWP+V V  I   ++  DCGVF ++Y E  A GLDV + CQ++ ++ FR+ LA +L
Sbjct: 249 THKEPWPLVIVDSIPLQRNNSDCGVFTIKYFEYEASGLDVATLCQEN-MSYFRKQLAFQL 307

Query: 123 FGH 125
           + +
Sbjct: 308 WTN 310

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778025|emb|CAN65286.1| hypothetical protein VITISV_042738 [Vitis vinifera]

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 4   HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
           HWVLGVV +    I +YDS++ +  ++ L   +  +A ++P +L  IAY+  H D    +
Sbjct: 578 HWVLGVVYLHRRIIYVYDSLMGINNNARLQVAIKALAKLLPHILNAIAYYGFHGDTK--V 635

Query: 64  SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLF 123
           +   W I R++DI Q ++ GDCG+F+++Y+E L H   + S      +  F + +A +LF
Sbjct: 636 NYQEWEIERLQDIPQQENDGDCGMFVMKYVEYLMHNHTLKSLTSA-RMDCFWEKMAAELF 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437278|ref|XP_004136419.1| PREDICTED: uncharacterized protein LOC101204276 [Cucumis sativus] gi|449442501|ref|XP_004139020.1| PREDICTED: uncharacterized protein LOC101209520 [Cucumis sativus] gi|449443700|ref|XP_004139615.1| PREDICTED: uncharacterized LOC101216800 [Cucumis sativus] gi|449443962|ref|XP_004139744.1| PREDICTED: uncharacterized protein LOC101211335 [Cucumis sativus] gi|449447675|ref|XP_004141593.1| PREDICTED: uncharacterized protein LOC101216800 [Cucumis sativus] gi|449449116|ref|XP_004142311.1| PREDICTED: uncharacterized protein LOC101215362 [Cucumis sativus] gi|449459746|ref|XP_004147607.1| PREDICTED: uncharacterized protein LOC101219741 [Cucumis sativus]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 3/124 (2%)

Query: 3   DHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEV 62
           +HW+L  +D++  ++ ++DS+  LT    +   L P+ +M+P +L    +       S  
Sbjct: 295 NHWILLCLDLVRCQVKVWDSLPSLTSAEDMRSILEPIQEMVPNLLDATGFFVRRGGSS-- 352

Query: 63  ISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKL 122
             K PWP+V V  I   ++  D GV  ++Y E +A   DV + CQ++ ++ FR+ LA +L
Sbjct: 353 THKEPWPLVIVDFIPLQQNNSDYGVVTIKYFEYVAASFDVVTLCQEN-MSYFRKQLAFQL 411

Query: 123 FGHR 126
           + + 
Sbjct: 412 WTNN 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800488|emb|CAN68582.1| hypothetical protein VITISV_011864 [Vitis vinifera]

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 12/120 (10%)

Query: 4   HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
           HWVLGVV +    I +YDS++ +  ++ L   + P+  ++P +L  IAY+  H D    +
Sbjct: 69  HWVLGVVHLHRRIIYVYDSLMXINNNARLQVXIKPLTXLLPHILNAIAYYGFHGDTK--V 126

Query: 64  SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLF 123
           +   W I R+          DCG+F+++Y+E L H   + S      +  FR+ +AV+LF
Sbjct: 127 NYQEWEIERL---------DDCGMFVIKYVEYLMHNHPLKS-LTSARMDWFREKMAVELF 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242433|ref|NP_199370.1| Ulp1 protease family protein [Arabidopsis thaliana] gi|10177930|dbj|BAB11195.1| unnamed protein product [Arabidopsis thaliana] gi|332007886|gb|AED95269.1| Ulp1 protease family protein [Arabidopsis thaliana]

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 8/122 (6%)

Query: 3   DHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEV 62
           +HWV   +D+   ++++YDS+  LT D+ +  Q + V  MIP +L      +        
Sbjct: 780 NHWVALDIDLTNKRVNVYDSIPSLTTDTEMAIQCMFVMTMIPAMLSSFIPSKQR---RRS 836

Query: 63  ISKIPWP-IVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVK 121
            SK+ W  I ++ + L P   GDC ++ ++Y+E LA G   +  C ++ +   R  LAV+
Sbjct: 837 YSKLEWKRITKIPENLDP---GDCAIYSIKYIECLALGKSFDGLCDEN-MQSLRTKLAVE 892

Query: 122 LF 123
           +F
Sbjct: 893 MF 894

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12320743|gb|AAG50521.1|AC084221_3 hypothetical protein [Arabidopsis thaliana]

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 73/131 (55%), Gaps = 16/131 (12%)

Query: 2    NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSE 61
            ++HWV   +++    I++YD++I  T++S +  ++ P+ +M+P +++ +        C +
Sbjct: 1039 SEHWVALGINLNERLITVYDALISYTRESAVKARMTPICEMMPYLVRAM--------CQD 1090

Query: 62   VI----SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHG---LDVNSYCQQDHVTQF 114
            V+    S  P+  VR   + Q  + GDCG + +++LE+LA G    D+ +  + D V  +
Sbjct: 1091 VLISPYSVEPFEYVRCPTVAQNPTTGDCGPYTMKFLELLAFGHPFSDLATIREADMVF-Y 1149

Query: 115  RQALAVKLFGH 125
            RQ  +V ++ H
Sbjct: 1150 RQKYSVDIYEH 1160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7267288|emb|CAB81070.1| putative protein [Arabidopsis thaliana]

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 73/131 (55%), Gaps = 16/131 (12%)

Query: 2    NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSE 61
            ++HWV   +++    I++YD++I  T++S +  ++ P+ +MIP +++ +        C +
Sbjct: 985  SEHWVALGINLNERLITVYDALISHTRESAVKARMTPICEMIPYLVRAM--------CQD 1036

Query: 62   VI----SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHG---LDVNSYCQQDHVTQF 114
            V+    S  P+  VR   + Q  + GDCG + +++LE+LA G    ++ +  + D V  +
Sbjct: 1037 VLISPYSVEPFEYVRCPTVAQNPTTGDCGSYTMKFLELLAFGHPFSELTTIREADMVF-Y 1095

Query: 115  RQALAVKLFGH 125
            RQ  +V ++ H
Sbjct: 1096 RQKYSVDIYEH 1106

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2157141	921	AT5G45570 [Arabidopsis thalian	0.863	0.123	0.295	7.6e-10
TAIR|locus:2115860	808	AT4G08430 [Arabidopsis thalian	0.871	0.142	0.289	3.3e-08
ZFIN|ZDB-GENE-060810-183	598	si:rp71-56k2.4 "si:rp71-56k2.4	0.818	0.180	0.288	1.9e-06
TAIR|locus:2130864	489	ESD4 "EARLY IN SHORT DAYS 4" [	0.818	0.220	0.288	2.1e-05
TAIR|locus:2054830	874	AT2G07240 "AT2G07240" [Arabido	0.734	0.110	0.323	0.00015
UNIPROTKB|H9L083	612	SENP1 "Uncharacterized protein	0.825	0.178	0.284	0.00034
TAIR|locus:2203058	611	AT1G37020 [Arabidopsis thalian	0.780	0.168	0.214	0.00056

TAIR|locus:2157141 AT5G45570 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 7.6e-10, P = 7.6e-10
 Identities = 36/122 (29%), Positives = 64/122 (52%)

Query:     3 DHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEV 62
             +HWV   +D+   ++++YDS+  LT D+ +  Q + V  MIP +L      +        
Sbjct:   780 NHWVALDIDLTNKRVNVYDSIPSLTTDTEMAIQCMFVMTMIPAMLSSFIPSKQR---RRS 836

Query:    63 ISKIPWP-IVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVK 121
              SK+ W  I ++ + L P   GDC ++ ++Y+E LA G   +  C ++ +   R  LAV+
Sbjct:   837 YSKLEWKRITKIPENLDP---GDCAIYSIKYIECLALGKSFDGLCDEN-MQSLRTKLAVE 892

Query:   122 LF 123
             +F
Sbjct:   893 MF 894

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

TAIR|locus:2115860 AT4G08430 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 35/121 (28%), Positives = 63/121 (52%)

Query:     3 DHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEV 62
             +HWV   +D+   +I++YDS+  LT D+ +V Q + V  MIP +L      +        
Sbjct:   667 NHWVALDIDLPKKRINVYDSIPSLTTDTEMVIQCMFVMTMIPAMLSSFIPSKQR---RRS 723

Query:    63 ISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKL 122
              SK+ W   R+  I +     DC ++ ++Y+E LA G   +  C ++  + + + LAV++
Sbjct:   724 YSKLEWK--RITKIPENLDACDCAIYSIKYIECLALGKSFDGLCDENMQSLWTK-LAVEM 780

Query:   123 F 123
             F
Sbjct:   781 F 781

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

ZFIN|ZDB-GENE-060810-183 si:rp71-56k2.4 "si:rp71-56k2.4" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 36/125 (28%), Positives = 62/125 (49%)

Query:     4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
             HW L VVD     +  YDSM     D         + D+I L L++    +   D    +
Sbjct:   486 HWSLAVVDFKSKSVRSYDSMGQRHDD---------ICDLILLYLKEEFKVKKGKDLD--V 534

Query:    64 SKIPWPIVRVR--DILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVK 121
             SK  W +  +R  +I Q K+G DCGVF+ +Y + ++ G ++    +Q+H+  FR+A+  +
Sbjct:   535 SK--WIVSSLRPSEIPQQKNGSDCGVFICKYADYISRGRNLTF--RQNHMPYFRKAMIWE 590

Query:   122 LFGHR 126
             +   +
Sbjct:   591 ILNQK 595

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 36/125 (28%), Positives = 56/125 (44%)

Query:     4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
             HW L V++    K+   DS             L  V  MI   L K    E +    + I
Sbjct:   380 HWTLAVINNRESKLLYLDS-------------LNGVDPMILNALAKYMGDEANEKSGKKI 426

Query:    64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYC-QQDHVTQFRQALAVKL 122
                 W +  V D+ Q K+G DCG+F+L+Y++  + GL +   C  Q+H+  FR   A ++
Sbjct:   427 DANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGL---CFSQEHMPYFRLRTAKEI 483

Query:   123 FGHRS 127
                R+
Sbjct:   484 LRLRA 488

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0009909 "regulation of flower development" evidence=RCA;IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0016926 "protein desumoylation" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2054830 AT2G07240 "AT2G07240" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00015, P = 0.00015
 Identities = 34/105 (32%), Positives = 52/105 (49%)

Query:     4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
             HWV   VD+   KI+I DS I L +D+ L  +L P+A M+P +     + +T     + I
Sbjct:   754 HWVSLCVDLKAHKITILDSNIQLRRDAALYAELQPLAAMLPYL-----FRQTSSSSGD-I 807

Query:    64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQ 108
             S  P+ + R   I Q  S  D GV  + +L + AH +     C +
Sbjct:   808 SLQPFLLDRPHGIPQVSSPFDSGVLSV-FL-IHAHAVGGVEECME 850

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

UNIPROTKB|H9L083 SENP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
 Identities = 35/123 (28%), Positives = 61/123 (49%)

Query:     4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
             HW L VVD     I+ YDSM  +  ++   R LL       L  ++  + +T+     ++
Sbjct:   501 HWCLAVVDFRKKTITYYDSMGGINSEAC--RILLQYLKQESLDKKRKEF-DTNG--WSLL 555

Query:    64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLF 123
             SK      + ++I Q  +G DCG+F  +Y + +     +N + QQ H+  FR+ +A ++ 
Sbjct:   556 SK------KSQEIPQQMNGSDCGMFACKYADCITKDKPIN-FTQQ-HMPYFRKRMAWEIL 607

Query:   124 GHR 126
              HR
Sbjct:   608 -HR 609

GO:0006508 "proteolysis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

TAIR|locus:2203058 AT1G37020 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00056, P = 0.00056
 Identities = 23/107 (21%), Positives = 54/107 (50%)

Query:     3 DHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEV 62
             +HWV    ++   +I +YDS+    ++  +V+Q + +  +IP +L +    + H   S  
Sbjct:   469 NHWVALDFNLKTNRIYVYDSIPTPVEELEMVQQCMFLRKIIPTMLSEYILEKDHKK-SYA 527

Query:    63 ISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQD 109
             + ++   + +   +   +  GDC ++ ++Y+E LA G   +  C ++
Sbjct:   528 MLEVK-RVTKKNPVNDDR--GDCAIYAIKYIECLALGKSFDGLCDRN 571


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.142   0.445    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      132       132   0.00091  102 3  11 22  0.36    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.00u 0.07s 12.07t   Elapsed:  00:00:02
  Total cpu time:  12.00u 0.07s 12.07t   Elapsed:  00:00:02
  Start:  Fri May 10 06:16:47 2013   End:  Fri May 10 06:16:49 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!
3rd Layer	3.4.22.68	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT5G45570 Ulp1 protease family protein; Ulp1 protease family protein; FUNCTIONS IN- peptidase activity, cysteine-type peptidase activity; INVOLVED IN- proteolysis; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Region of unknown function DUF1985 (InterPro-IPR015410), Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro-IPR003653); BEST Arabidopsis thaliana protein match is- Ulp1 protease family protein (TAIR-AT4G08430.1); Has 493 Blast hits to 433 proteins in 80 species- Archae - 2; Bacteria - 30; Metazoa - 116; Fungi - 21; Plants - 182; Viruses - 0; Other Eukaryotes - 142 (source- NC [...] (921 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	4e-20
PLN03189	490	PLN03189, PLN03189, Protease specific for SMALL UB	8e-07
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	3e-04

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 81.4 bits (201), Expect = 4e-20
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 6/120 (5%)

Query: 4   HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
           HWVL ++++    I+I DS+I L  ++V  +++ P+ +M+P ++      E      +  
Sbjct: 96  HWVLLIINLPKKTITILDSLISLHTEAV-KKRIRPIDNMLPYLMS-----EALKKEQDDP 149

Query: 64  SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLF 123
              P+ I R+  + Q  + GDCG ++L+++E+LA G+          V +FR+ LAV ++
Sbjct: 150 DLTPFEIKRLTKVPQQPNSGDCGPYVLKFIELLAEGVPFEFLTADKDVDRFRKKLAVDIY 209

This domain contains the catalytic triad Cys-His-Asn. Length = 216

>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 23/119 (19%)

Query: 1   MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIA--YHETHPD 58
              HW L V++    K    DS+                    P +L  +A  Y +   D
Sbjct: 378 QEIHWTLAVINKKDQKFQYLDSL----------------KGRDPKILDALAKYYVDEVKD 421

Query: 59  CSEV-ISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYC-QQDHVTQFR 115
            SE  I    W    V D+ + K+G DCG+F+++Y++  + GL +   C  Q+H+  FR
Sbjct: 422 KSEKDIDVSSWEQEFVEDLPEQKNGYDCGMFMIKYIDFYSRGLGL---CFGQEHMPYFR 477

Length = 490

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 4   HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
           HW L ++D     I  +DS+ +            PV +     L+     E         
Sbjct: 465 HWFLAIIDNPKKNILYFDSLANTHD---------PVLEF----LRSYLLDEY----KIQH 507

Query: 64  SKIPWPIVRVRDILQPKSGGDCGVFLLRYLE-VLAHGLDVNSYCQQDHVTQFRQALAVKL 122
            K P   ++   + Q ++G DCGVF+  ++   L    +      ++   + R+ +A  +
Sbjct: 508 DKDPQIKMKHCKVPQQRNGSDCGVFVCMFIRYFLE---NPPEQFSKNDRPRARKNMAHTI 564

Query: 123 F 123
            
Sbjct: 565 K 565

Length = 578

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	99.97
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	99.97
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.92
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.87
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.7
PF00770	183	Peptidase_C5: Adenovirus endoprotease; InterPro: I	97.95
PF03290	423	Peptidase_C57: Vaccinia virus I7 processing peptid	96.71
PRK11836	403	deubiquitinase; Provisional	95.85
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	95.09
PRK14848	317	deubiquitinase SseL; Provisional	94.86
PF03421	177	YopJ: YopJ Serine/Threonine acetyltransferase; Int	94.69
PRK15371	287	effector protein YopJ; Provisional	88.31
KOG4110	120	consensus NADH:ubiquinone oxidoreductase, NDUFS5/1	87.36

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=99.97  E-value=2.3e-30  Score=200.81  Aligned_cols=111  Identities=24%  Similarity=0.484  Sum_probs=92.1

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS   81 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n   81 (132)
                      +.||+|+|||+++++|.|||||++.. ...    ++.|.+++.    .+. .++.+.+++.   +.|....+.++|||+|
T Consensus       379 n~HWsLaVId~k~k~I~yyDSLgg~~-~~v----L~~L~rYL~----~E~-kdK~g~d~D~---s~W~~~~~~~vPQQ~N  445 (490)
T PLN03189        379 EIHWTLAVINKKDQKFQYLDSLKGRD-PKI----LDALAKYYV----DEV-KDKSEKDIDV---SSWEQEFVEDLPEQKN  445 (490)
T ss_pred             CCeeEEEEEEcCCCeEEEEeCCCCCC-HHH----HHHHHHHHH----HHH-hhhcCCCcch---hcceeccCCCCCCCCC
Confidence            68999999999999999999999864 323    444544443    343 4555555544   8998776679999999


Q ss_pred             CCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhccc
Q 032862           82 GGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRS  127 (132)
Q Consensus        82 ~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~  127 (132)
                      |+|||||||+||++++.|.++ +|+|+ ||+.||++|++||+..|+
T Consensus       446 G~DCGVFVL~yAE~~SrG~~L-tFSQe-DMp~fRrRma~EIl~~r~  489 (490)
T PLN03189        446 GYDCGMFMIKYIDFYSRGLGL-CFGQE-HMPYFRLRTAKEILRLKA  489 (490)
T ss_pred             CCCHHHHHHHHHHHHcCCCCC-CcChh-hhHHHHHHHHHHHHHhhc
Confidence            999999999999999999998 89999 999999999999999875

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.7e-31  Score=205.98  Aligned_cols=113  Identities=26%  Similarity=0.522  Sum_probs=97.2

Q ss_pred             CCCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCC
Q 032862            1 MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPK   80 (132)
Q Consensus         1 ~~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~   80 (132)
                      ++.||+|+|||+++++|.|||||++..+. .        +..|..+|+.+. .++.+..++.   +.|.+....++|||.
T Consensus       399 ~~vHW~l~vid~r~k~i~y~DS~~~~~nr-~--------~~aL~~Yl~~E~-~~k~~~~~d~---s~w~~~~~~~iP~Q~  465 (511)
T KOG0778|consen  399 LGVHWCLAVIDLREKTIEYYDSLGGGPNR-I--------CDALAKYLQDES-RDKSKKDFDV---SGWTIEFVQNIPQQR  465 (511)
T ss_pred             cCceEEEEEEEcccceEEEeeccCCCCcc-h--------HHHHHHHHHHHH-hhhhcCCCCc---cchhhhhhhcccccc
Confidence            47899999999999999999999975433 2        234455666675 6666666654   999998889999999


Q ss_pred             CCCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhcccc
Q 032862           81 SGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSW  128 (132)
Q Consensus        81 n~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~~  128 (132)
                      ||+|||+|+|+|++|++.|.|+ .|+|+ ||++||++|+.||+..+++
T Consensus       466 Ng~DCG~f~c~~~~~~s~~~p~-~ftq~-dmp~fR~~m~~eI~~~~l~  511 (511)
T KOG0778|consen  466 NGSDCGMFVCKYADYISRDVPL-TFTQQ-DMPYFRKKMAKEILHLKLL  511 (511)
T ss_pred             CCCccceEEeeechhhccCCCc-ccChh-hhHHHHHHHHHHHHhhhcC
Confidence            9999999999999999999999 99999 9999999999999998874

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.92  E-value=2e-24  Score=154.37  Aligned_cols=116  Identities=29%  Similarity=0.542  Sum_probs=79.4

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS   81 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n   81 (132)
                      ++||+|++||++.++|.+|||+++..........+..+..++.....     ...+...   +.++|....+.++|||.|
T Consensus        94 ~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~---~~~~~~~~~~~~~pqQ~n  165 (216)
T PF02902_consen   94 NNHWVLLVIDLPKKRIYVYDSLGSSNNDKRYKRVIENIIPFLKREYK-----KKEGRDP---DKSPFKIVRPPNVPQQPN  165 (216)
T ss_dssp             TTEEEEEEEETTTTEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHH-----HHHSSCT----TTTCEEEEECTS-SSSS
T ss_pred             hhccceeEEcccccEEEEEeccccccccccchhhhhhhhhhhhhccc-----ccccccc---ccceeeecccccccCCCC
Confidence            78999999999999999999999975412222223333333322211     1111222   237888888889999999


Q ss_pred             CCCcHHHHHHHHHHHhcCCCCCC---CccchhHHHHHHHHHHHHHhcc
Q 032862           82 GGDCGVFLLRYLEVLAHGLDVNS---YCQQDHVTQFRQALAVKLFGHR  126 (132)
Q Consensus        82 ~~DCGvfvl~~~e~~~~~~~~~~---~~~~~~i~~~R~~l~~~l~~~~  126 (132)
                      ++|||+|||+||++++.|.+...   ++++ ++..+|++++.++.+..
T Consensus       166 ~~dCGv~vl~~~~~~~~~~~~~~~~~l~~~-~i~~~r~~~a~~~~e~~  212 (216)
T PF02902_consen  166 GYDCGVYVLKFMECLLEGPSFDFSQELTEE-DIKNFRKKLAVDLYEEL  212 (216)
T ss_dssp             SSCHHHHHHHHHHHHHCTHHSTGCCSBTGH-HHHHHHHHHHH------
T ss_pred             CCCcHHHHHHHHHHHHhCCCCcccccCCHH-HHHHHHHHHHhhccccc
Confidence            99999999999999999977643   7888 99999999998887654

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.7e-23  Score=161.47  Aligned_cols=111  Identities=20%  Similarity=0.335  Sum_probs=87.4

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS   81 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n   81 (132)
                      ..||+|++||.++..|.|||||++.. ...        .+.+..|+..+. +..+       ++++|.....-++|||.|
T Consensus       463 ~~HW~l~II~~~~~~i~~~DSLan~~-~~v--------~~~L~~Y~ldE~-k~~~-------~k~~~~~~~~~~vPqQ~N  525 (578)
T COG5160         463 SYHWFLAIIDNPKKNILYFDSLANTH-DPV--------LEFLRSYLLDEY-KIQH-------DKDPQIKMKHCKVPQQRN  525 (578)
T ss_pred             cceEEEEEeecCcceeEEecccccCc-HHH--------HHHHHHHHHHHH-hccc-------CCchhhhhhcCCCCCCCC
Confidence            37999999999999999999999964 323        233444443342 3333       235565555668999999


Q ss_pred             CCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhccccccc
Q 032862           82 GGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSWKKT  131 (132)
Q Consensus        82 ~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~~~~~  131 (132)
                      |+|||||||+|++|++.+.+. .|.+. |++.+|+.|+++|+..++...+
T Consensus       526 g~DCGV~vc~~~~~~~~~~p~-~f~~n-d~~r~Rk~m~h~i~~~qi~y~~  573 (578)
T COG5160         526 GSDCGVFVCMFIRYFLENPPE-QFSKN-DRPRARKNMAHTIKDLQINYIS  573 (578)
T ss_pred             CCccceEEEEeeeecccCChh-hcCcc-chHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999775 99999 9999999999999998876543

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.70  E-value=7.3e-17  Score=113.85  Aligned_cols=99  Identities=25%  Similarity=0.300  Sum_probs=62.2

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS   81 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n   81 (132)
                      |+||+|+|++.+++++++|||+.+.+.. .-+.++++++.    ++....              ...   .....|||+|
T Consensus       107 GsHWSLLV~sr~~~~f~hyDS~~n~nt~-~a~~l~~kl~~----ll~~~~--------------~~~---~~~~~~qQqN  164 (223)
T KOG3246|consen  107 GSHWSLLVFSRPDGKFYHYDSLSNGNTK-DAKSLMKKLRA----LLKKKF--------------AKR---VECKCLQQQN  164 (223)
T ss_pred             CcceEEEEEEeeCCcEEEeecccCCCcH-HHHHHHHHHHH----HHhhhh--------------hhc---ccccChhhhc
Confidence            6899999999999999999999997654 32333443333    332111              111   0346788999


Q ss_pred             CCCcHHHHHHHHHHHhcCC---CCCCCccc---hhHHHHHHHHHHHH
Q 032862           82 GGDCGVFLLRYLEVLAHGL---DVNSYCQQ---DHVTQFRQALAVKL  122 (132)
Q Consensus        82 ~~DCGvfvl~~~e~~~~~~---~~~~~~~~---~~i~~~R~~l~~~l  122 (132)
                      |||||+|||.+.+.++...   +..+-.+.   +-+..+|..+..-|
T Consensus       165 gyDCG~hV~~~t~~l~~~~~~~~~~~~~~~~~~~~i~~lr~~l~~LI  211 (223)
T KOG3246|consen  165 GYDCGLHVCCNTRVLAERLLRCPYATSSQLLVVDLIKALREELLDLI  211 (223)
T ss_pred             CCchhHHHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHH
Confidence            9999999999877665322   33232233   14455555554444

>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.95  E-value=3.3e-05  Score=53.39  Aligned_cols=84  Identities=20%  Similarity=0.292  Sum_probs=42.3

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS   81 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n   81 (132)
                      |.||+.+..|+..++++.||++|=+  ++++..+.+.   --..+++..+......+.        .+.+.....-|=++
T Consensus        33 GvHWlA~Aw~P~s~t~YmFDPfGfs--d~~L~qiY~F---eYe~llrRSAL~~~~dRC--------v~LvkstqtVQ~p~   99 (183)
T PF00770_consen   33 GVHWLAFAWDPRSRTFYMFDPFGFS--DQKLKQIYQF---EYEGLLRRSALSSTPDRC--------VTLVKSTQTVQCPC   99 (183)
T ss_dssp             -S-EEEEEEETTTTEEEEE-TT-----HHHHHHHH-------HHHHHHHHHHH-TTSE--------EEEEEE-EE-S-TT
T ss_pred             ceeEEEEEecCCcceEEEeCCCCCC--HHHHHHHHhh---hHHHHHHHHhhcCCCCce--------EEEEeccceeeccC
Confidence            6899999999999999999999984  3343332110   012333322211111111        12233344455568


Q ss_pred             CCCcHHHHHHHHHHHhc
Q 032862           82 GGDCGVFLLRYLEVLAH   98 (132)
Q Consensus        82 ~~DCGvfvl~~~e~~~~   98 (132)
                      +.-||.|+++|+.++..
T Consensus       100 SaaCGLFC~lFL~aF~~  116 (183)
T PF00770_consen  100 SAACGLFCCLFLHAFVH  116 (183)
T ss_dssp             ---HHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHh
Confidence            99999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.

>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.71  E-value=0.0061  Score=47.25  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=23.2

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDL   26 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~   26 (132)
                      .+||-++++|-+++-+.+|||-|+.
T Consensus       241 ~~Hwkc~IfDk~~~~v~FydSgG~~  265 (423)
T PF03290_consen  241 MSHWKCCIFDKEKKIVYFYDSGGNI  265 (423)
T ss_pred             hhcceEEEEeccccEEEEEcCCCCC
Confidence            4899999999999999999999884

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].

>PRK11836 deubiquitinase; Provisional

Probab=95.85  E-value=0.049  Score=41.08  Aligned_cols=87  Identities=18%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             CCeEEEEEEe--------CCCCeEEEEcCCCCCCChHHHHHhHHHHHHHH-HHHHHHhhhccCCCCCCCCccCCCeeEEe
Q 032862            2 NDHWVLGVVD--------ILGGKISIYDSMIDLTKDSVLVRQLLPVADMI-PLVLQKIAYHETHPDCSEVISKIPWPIVR   72 (132)
Q Consensus         2 ~~HW~L~vv~--------~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~   72 (132)
                      |+||+|++..        ..+.+..+|.|+..-+.++.  ...+.+...+ ..++-... ..+.....     .+=.+.+
T Consensus       229 g~HWil~~l~Ki~~~~~~~ekiKC~IFNs~~~l~~d~~--~t~q~ii~a~~~~~~~~~~-~~~ik~~~-----~e~ei~f  300 (403)
T PRK11836        229 GGHWILVSLQKIVNEKNNTQQIKCVIFNSLRALGHDKE--NSLKRVINSFNSELMGEMS-NNNIKVHL-----TEPEIIF  300 (403)
T ss_pred             CCcEEEEEeHHhhhcccccceeEEEEEecHhhhccchh--hHHHHHHHhhhhhhhhhcc-hhhhcccc-----cCCceEE
Confidence            6899999762        24567789999987554311  1233333332 12222111 11111111     2222333


Q ss_pred             eccCCCCCCCCCcHHHHHHHHHHH
Q 032862           73 VRDILQPKSGGDCGVFLLRYLEVL   96 (132)
Q Consensus        73 ~~~~P~Q~n~~DCGvfvl~~~e~~   96 (132)
                      ...--||.=...||.||++.+.-+
T Consensus       301 ie~dLQq~vpngCGlFv~~a~Qe~  324 (403)
T PRK11836        301 LHADLQQYLSQSCGAFVCMAAQEV  324 (403)
T ss_pred             EechhhhcCCCccceehHHHHHHH
Confidence            322244545688999999888633

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=95.09  E-value=0.021  Score=47.24  Aligned_cols=41  Identities=22%  Similarity=0.489  Sum_probs=30.9

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCCC------------CCCccchhHHHHHHHH
Q 032862           77 LQPKSGGDCGVFLLRYLEVLAHGLDV------------NSYCQQDHVTQFRQAL  118 (132)
Q Consensus        77 P~Q~n~~DCGvfvl~~~e~~~~~~~~------------~~~~~~~~i~~~R~~l  118 (132)
                      |||.|..|||+|++.|++.+..+.+-            ..|.+. ++..+|..+
T Consensus       528 p~q~n~~dcG~~~~~~v~~f~e~~~e~~~~~~~~~~~l~~~~~~-~~~~~r~~~  580 (595)
T KOG0779|consen  528 PQQNNDVDCGSFVLEFVERFIEDAPERFNIEDEGTINLEWFPPK-EILKFRDEI  580 (595)
T ss_pred             cCccCcccchhhHHHHHHHhhhChhhhcccccccccccccCCch-HHhhhhhhh
Confidence            89999999999999999998766432            125555 666666654

>PRK14848 deubiquitinase SseL; Provisional

Probab=94.86  E-value=0.21  Score=37.06  Aligned_cols=77  Identities=23%  Similarity=0.373  Sum_probs=41.6

Q ss_pred             CCeEEEEEEeC--CCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCC
Q 032862            2 NDHWVLGVVDI--LGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQP   79 (132)
Q Consensus         2 ~~HW~L~vv~~--~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q   79 (132)
                      |+||+|++..-  .+.+..+|.|+..-+ +...++    +... .    .+.     +.. +     .=.+.+...--||
T Consensus       198 g~HWil~~~~Ki~~kiKC~iFNs~~~l~-eNs~~~----ii~~-a----k~a-----g~~-~-----e~di~fIe~nLQq  256 (317)
T PRK14848        198 GDHWLLCLFYKLAEKIKCLIFNTYYDLN-ENTKQE----IIEA-A----KIA-----GIS-E-----NEDVNFIETNLQN  256 (317)
T ss_pred             CCcEEEEEhHHhhhhceEEEeecHhhhh-hhHHHH----HHHH-H----Hhh-----Ccc-c-----CCceEEeehhhhh
Confidence            78999987633  245678899988754 223222    2111 0    111     110 0     1112222222344


Q ss_pred             CCCCCcHHHHHHHHHHHhcC
Q 032862           80 KSGGDCGVFLLRYLEVLAHG   99 (132)
Q Consensus        80 ~n~~DCGvfvl~~~e~~~~~   99 (132)
                      .=...||.||+.+++.+...
T Consensus       257 nVpngCGlFv~~aIq~l~~~  276 (317)
T PRK14848        257 NVPNGCGLFCYHTIQLLSNA  276 (317)
T ss_pred             hCCCcchHHHHHHHHHHHhc
Confidence            44578999999999977543

>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp

Probab=94.69  E-value=0.3  Score=34.30  Aligned_cols=26  Identities=27%  Similarity=0.439  Sum_probs=22.3

Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHHhcC
Q 032862           74 RDILQPKSGGDCGVFLLRYLEVLAHG   99 (132)
Q Consensus        74 ~~~P~Q~n~~DCGvfvl~~~e~~~~~   99 (132)
                      -.+..|...+|||+|.|.++......
T Consensus       138 ie~diQkS~~dC~IFsLs~AkK~~~~  163 (177)
T PF03421_consen  138 IEMDIQKSPSDCGIFSLSLAKKMYKE  163 (177)
T ss_pred             EecccccCcCcchhhHHHHHHHHhhc
Confidence            36899999999999999999877654

causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.

>PRK15371 effector protein YopJ; Provisional

Probab=88.31  E-value=4.2  Score=30.84  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=21.3

Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHhcCC
Q 032862           75 DILQPKSGGDCGVFLLRYLEVLAHGL  100 (132)
Q Consensus        75 ~~P~Q~n~~DCGvfvl~~~e~~~~~~  100 (132)
                      .+-.|...+|||+|.|.++.......
T Consensus       162 e~d~QkS~~dC~mFSL~~AkK~~~e~  187 (287)
T PRK15371        162 EMDIQRSSSECGIFSLALAKKLYLER  187 (287)
T ss_pred             ecccccCcccchhhhHHHHHHHhhhh
Confidence            46789999999999999998765443

>KOG4110 consensus NADH:ubiquinone oxidoreductase, NDUFS5/15kDa [Energy production and conversion]

Probab=87.36  E-value=0.55  Score=30.26  Aligned_cols=32  Identities=25%  Similarity=0.527  Sum_probs=26.6

Q ss_pred             CCeeEEeeccCCCCCCCCCcHHHHHHHHHHHh
Q 032862           66 IPWPIVRVRDILQPKSGGDCGVFLLRYLEVLA   97 (132)
Q Consensus        66 ~~~~~~~~~~~P~Q~n~~DCGvfvl~~~e~~~   97 (132)
                      ..|.+.....+|.-.-++|||.|-..++||.-
T Consensus        17 ~r~p~tds~~~p~~~q~r~cg~FE~e~~eC~e   48 (120)
T KOG4110|consen   17 DRWPTTDSTEQPYKHQGRDCGKFEKEWMECAE   48 (120)
T ss_pred             hhccccccccCccccccccccHHHHHHHHHHH
Confidence            56766666778888889999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
2iyc_A	226	Senp1 Native Structure Length = 226		3e-04
2xre_A	230	Detection Of Cobalt In Previously Unassigned Human		4e-04
2xph_A	238	Crystal Structure Of Human Senp1 With The Bound Cob		4e-04
2ckg_A	225	The Structure Of Senp1 Sumo-2 Co-Complex Suggests A		5e-04

>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 4   HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
           HW L VVD     I+ YDSM  +  ++   R LL       +  ++    E   +  ++ 
Sbjct: 115 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 169
Query: 64  SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
           SK      + ++I Q  +G DCG+F  +Y + +     +N + QQ H+  FR+ +
Sbjct: 170 SK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 216

>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 4   HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
           HW L VVD     I+ YDSM  +  ++   R LL       +  ++    E   +  ++ 
Sbjct: 119 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 173
Query: 64  SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
           SK      + ++I Q  +G DCG+F  +Y + +     +N + QQ H+  FR+ +
Sbjct: 174 SK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 220

>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 4   HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
           HW L VVD     I+ YDSM  +  ++   R LL       +  ++    E   +  ++ 
Sbjct: 127 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 181
Query: 64  SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
           SK      + ++I Q  +G DCG+F  +Y + +     +N + QQ H+  FR+ +
Sbjct: 182 SK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 228

>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 4   HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
           HW L VVD     I+ YDSM  +  ++   R LL       +  ++  +           
Sbjct: 115 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKRKEFDTNGWQLFSKK 172
Query: 64  SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
           S+IP          Q  +G DCG+F  +Y + +     +N + QQ H+  FR+ +
Sbjct: 173 SQIP----------QQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	8e-08
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	2e-05
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	2e-05
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	5e-05

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 48.2 bits (114), Expect = 8e-08
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 13/125 (10%)

Query: 2   NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSE 61
             HW L VVD     I+ YDSM  +               ++   L++ +  +   +   
Sbjct: 125 GVHWCLAVVDFRKKNITYYDSMGGINN---------EACRILLQYLKQESIDKKRKEFD- 174

Query: 62  VISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVK 121
             +       + ++I Q  +G DCG+F  +Y + +     +N + QQ  +  FR+ +  +
Sbjct: 175 -TNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQH-MPYFRKRMVWE 231

Query: 122 LFGHR 126
           +   +
Sbjct: 232 ILHRK 236

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 24/125 (19%), Positives = 34/125 (27%), Gaps = 31/125 (24%)

Query: 2   NDHWVLGVVDILGGKISI---YDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPD 58
           N HW L VVD           YDSM                      +    AYH     
Sbjct: 73  NAHWSLLVVDRRNKDAVAAYHYDSM-------------AQKDPQQRYLADMAAYH----- 114

Query: 59  CSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSY-----CQQDHVTQ 113
                  + +       I     G   G  +L  +EVLAH +   ++          +  
Sbjct: 115 -----LGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEP 169

Query: 114 FRQAL 118
            R  +
Sbjct: 170 DRGLI 174

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 17/121 (14%)

Query: 2   NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSE 61
             HW LG++D+    I   DS+      +        +   +   +          + S+
Sbjct: 112 QSHWALGIIDLKKKTIGYVDSL-----SNGPNAMSFAILTDLQKYVM---------EESK 157

Query: 62  VISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVK 121
                 + ++ +    QP  G DCG+++       +    ++ +  +D   + R+ +A  
Sbjct: 158 HTIGEDFDLIHLDCPQQPN-GYDCGIYVCMNTLYGSADAPLD-FDYKD-AIRMRRFIAHL 214

Query: 122 L 122
           +
Sbjct: 215 I 215

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 15/123 (12%)

Query: 2   NDHWVLGVVDILGGKISIYDSMIDL-TKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCS 60
             HW L V+D+    +   DSM     +   ++ Q L                +T  +  
Sbjct: 113 KVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYL------------QDESKTKRNSD 160

Query: 61  EVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAV 120
             + +     ++  +I Q  +G DCG+F  +Y + ++    +  + Q   +  FR+ +  
Sbjct: 161 LNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPIT-FTQHQ-MPLFRKKMVW 218

Query: 121 KLF 123
           ++ 
Sbjct: 219 EIL 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.97
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.97
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.95
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.91
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.88
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.85
4ekf_A	204	Adenain; alpha and beta protein (A+B), hydrolase;	98.13

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.97  E-value=2.7e-30  Score=186.25  Aligned_cols=112  Identities=18%  Similarity=0.375  Sum_probs=90.0

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEe--eccCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVR--VRDILQP   79 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~P~Q   79 (132)
                      ++||+|++||+++++|.+|||+++.. ...    .+.+.+++.    .+. .++.+..++.   ++|++..  ..++|||
T Consensus       113 ~~HW~l~vi~~~~~~i~~~DSl~~~~-~~~----~~~l~~~l~----~e~-~~k~~~~~~~---~~w~~~~~~~~~~PqQ  179 (226)
T 1th0_A          113 KVHWSLVVIDLRKKCLKYLDSMGQKG-HRI----CEILLQYLQ----DES-KTKRNSDLNL---LEWTHHSMKPHEIPQQ  179 (226)
T ss_dssp             TTEEEEEEEETTTTEEEEECTTCCCC-HHH----HHHHHHHHH----HHH-HHHTSCCCCG---GGCEEEECCTTTSCCC
T ss_pred             CcEEEEEEEEcCCCceEEEcCCCCCc-hHH----HHHHHHHHH----HHH-HHhcCCCCCc---ccceeccccCCCCCCC
Confidence            68999999999999999999999864 322    333444443    332 3334444433   7898753  4689999


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhcccc
Q 032862           80 KSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSW  128 (132)
Q Consensus        80 ~n~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~~  128 (132)
                      .||+|||||||+||++++.|.++ +|+++ +|+.+|++|+.||+.++||
T Consensus       180 ~Ng~DCGvfvl~~~~~~~~~~~~-~f~q~-dm~~~R~~~~~ei~~~~l~  226 (226)
T 1th0_A          180 LNGSDCGMFTCKYADYISRDKPI-TFTQH-QMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             CSSSCHHHHHHHHHHHHTTTCCC-CCCGG-GHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCC-ccChh-hHHHHHHHHHHHHHhCCcC
Confidence            99999999999999999999887 89999 9999999999999999986

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.97  E-value=4.9e-30  Score=186.22  Aligned_cols=112  Identities=22%  Similarity=0.478  Sum_probs=89.9

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEE--eeccCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIV--RVRDILQP   79 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~Q   79 (132)
                      |+||+|++||+++++|.+|||+++.. ...    ++.+.+++.    .+. .++.+..++   .++|++.  ..+++|||
T Consensus       125 ~~HW~L~vi~~~~~~i~~~DSl~~~~-~~~----~~~l~~~L~----~e~-~~k~~~~~~---~~~w~~~~~~~~~~PqQ  191 (238)
T 2xph_A          125 GVHWCLAVVDFRKKNITYYDSMGGIN-NEA----CRILLQYLK----QES-IDKKRKEFD---TNGWQLFSKKSQEIPQQ  191 (238)
T ss_dssp             TTEEEEEEEETTTTEEEEECTTCCCC-HHH----HHHHHHHHH----HHH-HHHHCSCCC---CTTCEEEECCSSSSCCC
T ss_pred             CCceEEEEEEcccceEEEeecccCCC-HHH----HHHHHHHHH----HHH-HHhcCCCcC---cccceecccCCCCCCCC
Confidence            68999999999999999999999864 323    333444443    222 333334443   3889875  25689999


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhcccc
Q 032862           80 KSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSW  128 (132)
Q Consensus        80 ~n~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~~  128 (132)
                      .||+|||||||+||++++.|.++ +|+++ +|+.+|++|+.||+.++||
T Consensus       192 ~Ng~DCGvfvl~~~e~~~~~~~~-~f~q~-dm~~~R~~m~~eil~~~ll  238 (238)
T 2xph_A          192 MNGSDCGMFACKYADCITKDRPI-NFTQQ-HMPYFRKRMVWEILHRKLL  238 (238)
T ss_dssp             SBGGGHHHHHHHHHHHHHTTCCC-CCCGG-GHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCC-CcChh-hHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999887 99999 9999999999999999986

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.95  E-value=2.4e-27  Score=170.33  Aligned_cols=109  Identities=17%  Similarity=0.260  Sum_probs=84.6

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS   81 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n   81 (132)
                      ++||+|++||+++++|.+|||+++..+... ...++.++    .++..+. .++.+        .+|.+. ..++|||.|
T Consensus       112 ~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~-~~i~~~l~----~~l~~e~-~~~~~--------~~~~~~-~~~~PqQ~N  176 (221)
T 1euv_A          112 QSHWALGIIDLKKKTIGYVDSLSNGPNAMS-FAILTDLQ----KYVMEES-KHTIG--------EDFDLI-HLDCPQQPN  176 (221)
T ss_dssp             TTEEEEEEEETTTTEEEEECSSCCSCCHHH-HHHHHHHH----HHHHHHT-TSSSC--------TTCEEE-EECCCCCSS
T ss_pred             CCeEEEEEEEcCCCEEEEEecCCCCCcchH-HHHHHHHH----HHHHHHH-HHhcC--------CCceEe-ecCCCCCCC
Confidence            489999999999999999999997544311 11233333    3333333 33222        456654 458999999


Q ss_pred             CCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhccc
Q 032862           82 GGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRS  127 (132)
Q Consensus        82 ~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~  127 (132)
                      |+|||||||+||++++.|.++ +|+++ +|+.+|++|+.+|+.+++
T Consensus       177 ~~DCGvfv~~~~~~~~~~~~l-~f~~~-d~~~~R~~i~~~Il~~~l  220 (221)
T 1euv_A          177 GYDCGIYVCMNTLYGSADAPL-DFDYK-DAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             SSTHHHHHHHHHHHHHTTCCC-CCCHH-HHHHHHHHHHHHHHTTTT
T ss_pred             CcCHHHHHHHHHHHHhCCCCC-CcCHH-HHHHHHHHHHHHHHhccC
Confidence            999999999999999999988 99999 999999999999999876

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.91  E-value=1.3e-24  Score=155.11  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=75.9

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS   81 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n   81 (132)
                      |+||+|+||++++++|.+|||+++.+ ....    +.+.+.+..++.     .+    .     .+|.+. .+++|||.|
T Consensus       100 ~~HW~L~vi~~~~~~i~~~DSl~~~n-~~~~----~~l~~~l~~~l~-----~~----~-----~~~~~~-~~~~PqQ~N  159 (212)
T 2bkr_A          100 GSHWSLLVYLQDKNSFFHYDSHSRSN-SVHA----KQVAEKLEAFLG-----RK----G-----DKLAFV-EEKAPAQQN  159 (212)
T ss_dssp             CCCEEEEEEEGGGTEEEEECSSTTTT-HHHH----HHHHHHHHHHHS-----CT----T-----CCCCEE-ECCCCCCSS
T ss_pred             CCCeEEEEEEecCCeEEEEeCCCCCC-HHHH----HHHHHHHHHHhC-----Cc----c-----ccceEe-ECCCCCCCC
Confidence            69999999999999999999999854 3232    233333433321     11    0     233333 468999999


Q ss_pred             CCCcHHHHHHHHHHHhcCC----CC---CCCccchhHHHHHHHHHHHHHhc
Q 032862           82 GGDCGVFLLRYLEVLAHGL----DV---NSYCQQDHVTQFRQALAVKLFGH  125 (132)
Q Consensus        82 ~~DCGvfvl~~~e~~~~~~----~~---~~~~~~~~i~~~R~~l~~~l~~~  125 (132)
                      |+|||||||+||++++.+.    ++   ..|+++ +|..+|++|+..|..-
T Consensus       160 ~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~R~~i~~lI~~L  209 (212)
T 2bkr_A          160 SYDCGMYVICNTEALCQNFFRQQTESLLQLLTPA-YITKKRGEWKDLIATL  209 (212)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHH-HHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhhhcCcccccccCCHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999998775    11   257888 9999999999888753

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.88  E-value=5.4e-23  Score=144.21  Aligned_cols=100  Identities=26%  Similarity=0.181  Sum_probs=69.6

Q ss_pred             CCeEEEEEEeCCCCeE---EEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCC
Q 032862            2 NDHWVLGVVDILGGKI---SIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQ   78 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i---~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~   78 (132)
                      |+||+|+|||.+++++   ++|||+++.. . ..+    .+.+.+..++   +      .+.     .++   ...++||
T Consensus        73 ~~HWsLlvi~~~~~~~~~~~~~DSl~~~~-~-~~~----~l~~~l~~~l---~------~~~-----~~~---~~~~~Pq  129 (186)
T 2oix_A           73 NAHWSLLVVDRRNKDAVAAYHYDSMAQKD-P-QQR----YLADMAAYHL---G------LDY-----QQT---HEMPIAI  129 (186)
T ss_dssp             TTEEEEEEEECSSTTSCEEEEECCCSSCC-H-HHH----HHHHHHHHHT---T------CCG-----GGC---EEECBCC
T ss_pred             CCccEEEEEECCCCeeeeeEEEcCCCCCC-H-HHH----HHHHHHHHHh---C------CCc-----ccc---ccCCCCC
Confidence            6899999999999999   9999999843 2 111    2233332221   1      111     222   2457999


Q ss_pred             CCCCCCcHHHHHHHHHHHhcC----C--CCCCCccchhHHHHHHHHHHHHHhc
Q 032862           79 PKSGGDCGVFLLRYLEVLAHG----L--DVNSYCQQDHVTQFRQALAVKLFGH  125 (132)
Q Consensus        79 Q~n~~DCGvfvl~~~e~~~~~----~--~~~~~~~~~~i~~~R~~l~~~l~~~  125 (132)
                      |.||+|||||||+|+++++.+    .  .+..++.+ ++...|+.|...|.+.
T Consensus       130 Q~Ng~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~-~i~~~R~~i~~lI~~~  181 (186)
T 2oix_A          130 QSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLT-DIEPDRGLIRDRLAQA  181 (186)
T ss_dssp             CC--CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBT-TCCCCHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCccCCCcCCHH-HHHHHHHHHHHHHHhc
Confidence            999999999999999998753    1  23357777 9999999998888764

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.85  E-value=7.5e-21  Score=142.62  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=67.3

Q ss_pred             eEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCCCCCcHHHHHHHHHH
Q 032862           16 KISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEV   95 (132)
Q Consensus        16 ~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n~~DCGvfvl~~~e~   95 (132)
                      +|.+||||++..+...    ++.|++++.    .+. .++++....+ +.+.|... .+.+|+|.|++|||||||+|+++
T Consensus       207 cIl~lDSL~~~~~~~~----~~~Lr~YL~----~E~-~~k~~~~~~f-~~~~~~~~-~~~~P~Q~N~~DCGvfvl~~~e~  275 (323)
T 3eay_A          207 CILILDSLKAASVQNT----VQNLREYLE----VEW-EVKLKTHRQF-SKTNMVDL-CPKVPKQDNSSDCGVYLLQYVES  275 (323)
T ss_dssp             EEEEECSSCCSSHHHH----HHHHHHHHH----HHH-HHHHSSCCCC-CTTTSCEE-CCBCCCCCSTTCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcchH----HHHHHHHHH----HHH-HhhcCCCcCC-CHhHceec-cCCCCCcCCCCcHHHHHHHHHHH
Confidence            6999999999653323    444555543    443 4333222232 34677654 46899999999999999999999


Q ss_pred             HhcCCCCC---------CCccchhHHHHHHHHHHHHHh
Q 032862           96 LAHGLDVN---------SYCQQDHVTQFRQALAVKLFG  124 (132)
Q Consensus        96 ~~~~~~~~---------~~~~~~~i~~~R~~l~~~l~~  124 (132)
                      ++.+.+++         .|+.. .|...|..|..-|..
T Consensus       276 ~~~~~~~~f~~~~~~~~wf~~~-~i~~kR~ei~~LI~~  312 (323)
T 3eay_A          276 FFKDPIVNFELPIHLEKWFPRH-VIKTKREDIRELILK  312 (323)
T ss_dssp             HHHSCCCCCCSSCBCTTSSCHH-HHHTHHHHHHHHHHH
T ss_pred             HHhCCccccccccccccCCCHH-HHHHHHHHHHHHHHH
Confidence            99887541         24556 899999988776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	6e-09
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	6e-08
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	2e-06

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 6e-09
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 13/125 (10%)

Query: 2   NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSE 61
             HW L VVD     I+ YDSM  +  ++              L+               
Sbjct: 113 GVHWCLAVVDFRKKNITYYDSMGGINNEAC-----------RILLQYLKQESIDKKRKEF 161

Query: 62  VISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVK 121
             +       + ++I Q  +G D G+F  +Y + +     +N    Q H+  FR+ +  +
Sbjct: 162 DTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFT--QQHMPYFRKRMVWE 219

Query: 122 LFGHR 126
           +   +
Sbjct: 220 ILHRK 224

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 6e-08
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 13/126 (10%)

Query: 1   MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCS 60
              HW L V+D+    +   DSM               + +++   LQ  +  + + D +
Sbjct: 112 RKVHWSLVVIDLRKKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTKRNSDLN 162

Query: 61  EVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAV 120
             + +     ++  +I Q  +G DCG+F  +Y + ++    +     Q  +  FR+ +  
Sbjct: 163 --LLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITF--TQHQMPLFRKKMVW 218

Query: 121 KLFGHR 126
           ++   +
Sbjct: 219 EILHQQ 224

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (100), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 1   MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCS 60
              HW LG++D+    I   DS+ +             ++  I   LQK    E+     
Sbjct: 111 NQSHWALGIIDLKKKTIGYVDSLSNGPN---------AMSFAILTDLQKYVMEESKHTIG 161

Query: 61  EVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAV 120
           E    I           Q  +G DCG+++       +    ++ +  +D   + R+ +A 
Sbjct: 162 EDFDLIHLDC------PQQPNGYDCGIYVCMNTLYGSADAPLD-FDYKD-AIRMRRFIAH 213

Query: 121 KL 122
            +
Sbjct: 214 LI 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.95
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.95
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.95
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.86
d1nlna_	203	Human adenovirus 2 proteinase, adenain {Mastadenov	97.94

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-27  Score=168.52  Aligned_cols=111  Identities=22%  Similarity=0.426  Sum_probs=85.3

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEE--eeccCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIV--RVRDILQP   79 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~Q   79 (132)
                      |+||+|++|+++.++|.+|||+++..+. ...    .+.+.+.......     .....+.   .+|+..  .+.++|||
T Consensus       113 ~~HW~l~vi~~~~~~i~~~DSl~~~~~~-~~~----~i~~~l~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~pqQ  179 (225)
T d2iy1a1         113 GVHWCLAVVDFRKKNITYYDSMGGINNE-ACR----ILLQYLKQESIDK-----KRKEFDT---NGWQLFSKKSQEIPQQ  179 (225)
T ss_dssp             SSCEEEEEEETTTTEEEEECTTCCCCHH-HHH----HHHHHHHHHHHHH-----HSSCCCC---TTCEEEECCTTTSCCC
T ss_pred             CCCEEEEEEEeccceEEEEecCCCCchH-HHH----HHHHHHHHHHHHh-----ccCccCc---ccceecccccccCCCC
Confidence            6899999999999999999999986532 322    2333332222111     1122222   667653  35689999


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhccc
Q 032862           80 KSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRS  127 (132)
Q Consensus        80 ~n~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~  127 (132)
                      .||+|||+|||+||++++.|.++ +|+++ +|+.+|++|+.+|++++|
T Consensus       180 ~Ng~DCGvfvl~~~~~~~~~~~~-~~~q~-~~~~~R~~~~~~l~~~~l  225 (225)
T d2iy1a1         180 MNGSDAGMFACKYADCITKDRPI-NFTQQ-HMPYFRKRMVWEILHRKL  225 (225)
T ss_dssp             CSSSTHHHHHHHHHHHHHTTCCC-CCCGG-GHHHHHHHHHHHHHTTCC
T ss_pred             CCCCChHHHHHHHHHHHhCCCCC-CcCHH-HHHHHHHHHHHHHHhCcC
Confidence            99999999999999999999887 89999 999999999999999886

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.3e-27  Score=169.87  Aligned_cols=109  Identities=17%  Similarity=0.266  Sum_probs=84.4

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS   81 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n   81 (132)
                      |+||+|++||+++++|.+|||+++.... .....++.+    ..++..+. ..+.+        ..|.+. ..++|||+|
T Consensus       112 ~~HW~l~vi~~~~~~i~~~DSl~~~~~~-~~~~i~~~l----~~~l~~~~-~~~~~--------~~~~~~-~~~~PqQ~N  176 (221)
T d1euva_         112 QSHWALGIIDLKKKTIGYVDSLSNGPNA-MSFAILTDL----QKYVMEES-KHTIG--------EDFDLI-HLDCPQQPN  176 (221)
T ss_dssp             TTEEEEEEEETTTTEEEEECSSCCSCCH-HHHHHHHHH----HHHHHHHT-TSSSC--------TTCEEE-EECCCCCSS
T ss_pred             cceEEEEEeeccccceeeeccccCCCcH-HHHHHHHHH----HHHHHHHH-HhhcC--------CCCeee-eccCCCCCC
Confidence            5899999999999999999999986544 322223333    33333332 22111        456654 358999999


Q ss_pred             CCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhccc
Q 032862           82 GGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRS  127 (132)
Q Consensus        82 ~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~  127 (132)
                      |+|||+|||+||++++.|.++ +|+++ ||+++|++++.+|+.+++
T Consensus       177 ~~DCGvfvl~~~~~~~~~~~~-~~~q~-d~~~~R~~i~~~il~~~l  220 (221)
T d1euva_         177 GYDCGIYVCMNTLYGSADAPL-DFDYK-DAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             SSTHHHHHHHHHHHHHTTCCC-CCCHH-HHHHHHHHHHHHHHTTTT
T ss_pred             CCChHHHHHHHHHHHhCCCCC-ccCHH-HHHHHHHHHHHHHHHhhc
Confidence            999999999999999999887 89999 999999999999999875

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-27  Score=167.39  Aligned_cols=112  Identities=18%  Similarity=0.371  Sum_probs=86.1

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeE--EeeccCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPI--VRVRDILQP   79 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~Q   79 (132)
                      ++||+|++||++++++.+|||+++... ..    .+.+.+++...+...     .....+.   ..|+.  ..+..+|||
T Consensus       113 ~~HW~L~vi~~~~~~i~~~DSl~~~~~-~~----~~~i~~~l~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~pqQ  179 (226)
T d1th0a_         113 KVHWSLVVIDLRKKCLKYLDSMGQKGH-RI----CEILLQYLQDESKTK-----RNSDLNL---LEWTHHSMKPHEIPQQ  179 (226)
T ss_dssp             TTEEEEEEEETTTTEEEEECTTCCCCH-HH----HHHHHHHHHHHHHHH-----TSCCCCG---GGCEEEECCTTTSCCC
T ss_pred             CCceEEEEEEeccceEEEeccccCCCh-HH----HHHHHHHHHHHHHHh-----hCCCcCc---ccceeeeeccCCCCCC
Confidence            689999999999999999999998643 23    334444443322221     1122222   44443  345789999


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhcccc
Q 032862           80 KSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSW  128 (132)
Q Consensus        80 ~n~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~~  128 (132)
                      +||+|||+|||+||++++.|.++ +|++. +|+.+|++|+.+|++++|+
T Consensus       180 ~N~~DCGvfvl~~~~~~~~~~~~-~~tq~-di~~~R~~i~~el~~~~l~  226 (226)
T d1th0a_         180 LNGSDCGMFTCKYADYISRDKPI-TFTQH-QMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             CSSSCHHHHHHHHHHHHTTTCCC-CCCGG-GHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCC-CcCHH-HHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999887 89999 9999999999999999985

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.6e-22  Score=142.21  Aligned_cols=102  Identities=18%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS   81 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n   81 (132)
                      |+||+|++||+++++|++|||+++.. ....+    .+.+.+...+.     . .+        .++.+. ...+|+|.|
T Consensus       100 g~HW~l~vi~~~~~~i~~~DSl~~~~-~~~~~----~~~~~l~~~~~-----~-~~--------~~~~~~-~~~~p~Q~N  159 (212)
T d2bkra1         100 GSHWSLLVYLQDKNSFFHYDSHSRSN-SVHAK----QVAEKLEAFLG-----R-KG--------DKLAFV-EEKAPAQQN  159 (212)
T ss_dssp             CCCEEEEEEEGGGTEEEEECSSTTTT-HHHHH----HHHHHHHHHHS-----C-TT--------CCCCEE-ECCCCCCSS
T ss_pred             cceeeeeeeccccceEEEecCCCcCC-HHHHH----HHHHHHHHHhc-----c-cc--------Cceeee-ecccCCCCC
Confidence            58999999999999999999999864 32322    23333322211     1 01        223332 458999999


Q ss_pred             CCCcHHHHHHHHHHHhcCC----CC---CCCccchhHHHHHHHHHHHHHh
Q 032862           82 GGDCGVFLLRYLEVLAHGL----DV---NSYCQQDHVTQFRQALAVKLFG  124 (132)
Q Consensus        82 ~~DCGvfvl~~~e~~~~~~----~~---~~~~~~~~i~~~R~~l~~~l~~  124 (132)
                      |+|||+|||+||++++.+.    ..   ..++++ +|..+|++|...|..
T Consensus       160 ~~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~R~~l~~lI~~  208 (212)
T d2bkra1         160 SYDCGMYVICNTEALCQNFFRQQTESLLQLLTPA-YITKKRGEWKDLIAT  208 (212)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHH-HHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHhcccccchhhhhcCCHH-HHHHHHHHHHHHHHH
Confidence            9999999999999987432    11   135678 999999999877653

>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Human adenovirus 2 proteinase, adenain
species: Mastadenovirus H2 [TaxId: 10515]

Probab=97.94  E-value=9.7e-06  Score=54.22  Aligned_cols=84  Identities=15%  Similarity=0.269  Sum_probs=52.7

Q ss_pred             CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHH-HHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCC
Q 032862            2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADM-IPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPK   80 (132)
Q Consensus         2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~-l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~   80 (132)
                      |.||+.++.|+..++++.||+++=+  +++++...    ++ -..+++..+.....-+.        .+.+.....-|=+
T Consensus        51 G~HWlA~Aw~P~s~t~Y~FDPfGfs--d~~L~q~Y----~FeY~~llkRSAL~~spdRC--------vtlvkstq~VQcp  116 (203)
T d1nlna_          51 GVHWMAFAWNPRSKTCYLFEPFGFS--DQRLKQVY----QFEYESLLRRSAIASSPDRC--------ITLEKSTQSVQGP  116 (203)
T ss_dssp             CCCEEEEEEETTTTEEEEECTTCCC--HHHHHHHH----CCCCHHHHHHHHHHHCTTSE--------EEEEEECEECSCT
T ss_pred             ceeeEEeEecCCcCeEEEECCCCCC--HHHHHHHh----hhhHHHHHHHHhhcCCCCce--------EEEEeccceecCC
Confidence            6899999999999999999999984  33433311    11 02233322201110011        1223344455667


Q ss_pred             CCCCcHHHHHHHHHHHhcC
Q 032862           81 SGGDCGVFLLRYLEVLAHG   99 (132)
Q Consensus        81 n~~DCGvfvl~~~e~~~~~   99 (132)
                      ++.-||.|+++|+.++..-
T Consensus       117 ~SaaCGLFC~lFL~aF~~~  135 (203)
T d1nlna_         117 NSAACGLFCCMFLHAFANW  135 (203)
T ss_dssp             TCCCHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHhC
Confidence            8999999999999998743