Citrus Sinensis ID: 032864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCVSS
Secondary Structure (PSIPRED)
ccEEEEEEccccEEEEEEEcccEEEEEccccHHHHHHHHHHHcccccEEEEEEcccEEEEEEEEEcccEEEEcccccHHHHHHHHHccccccEEEEEccccccccEEEEEEccEEEEcccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEcEccEccHHHHEEEccccEEEEccccHHHHHHHHHHHcccccEEEEcEccEccHHHHcEEcccEEEEEccccHHHHHHHHHHcccccEEEEEccccccHHHHEEEcccEEEEcccccHEEEEEEEcc
Coil and Loop (DISEMBL)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADvipvvktsiggnriigrlcvgnknglllphtttDQELQHLRNSLPDQVVVQRIEERLSALgnciacndhvalaHTDLDRVMLLLCVSS
Flexible Loop (DISEMBL)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCVSS
Low Complexity Region (SEG)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCVSS
Disordered region (IsUnstruct)
*****MFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV**
Disordered Region (DISOPRED)
*ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCVS*
Disordered Region (DISEMBL)
********NSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCVSS
Disordered Region (DISPRO)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCVSS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCVSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q9M060	245	Eukaryotic translation in	yes	no	0.901	0.485	0.894	1e-62
O81920	193	Eukaryotic translation in	N/A	no	0.909	0.621	0.837	1e-55
Q12522	245	Eukaryotic translation in	yes	no	0.901	0.485	0.723	3e-50
P56538	245	Eukaryotic translation in	yes	no	0.931	0.502	0.715	8e-50
O55135	245	Eukaryotic translation in	yes	no	0.931	0.502	0.723	1e-49
Q3KRD8	245	Eukaryotic translation in	yes	no	0.931	0.502	0.715	5e-49
A4RSQ6	245	Eukaryotic translation in	yes	no	0.901	0.485	0.691	6e-49
P56537	245	Eukaryotic translation in	yes	no	0.931	0.502	0.707	7e-49
B9PVB9	249	Eukaryotic translation in	N/A	no	0.931	0.493	0.707	9e-49
Q6GR45	245	Eukaryotic translation in	N/A	no	0.931	0.502	0.707	2e-48

>sp|Q9M060|IF62_ARATH Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1

 Score =  238 bits (606), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/123 (89%), Positives = 119/123 (96%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FE+ELADVIP+VKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VALAHTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query: 121 LDR 123
           LD+
Sbjct: 121 LDK 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|O81920|IF6_BETVU Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1

 Score =  214 bits (545), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/123 (83%), Positives = 110/123 (89%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYSTFE ELAD IPVVKTSI G RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
                NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VAL HTD
Sbjct: 61  PNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTD 120

Query: 121 LDR 123
           LD+
Sbjct: 121 LDK 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex.

Beta vulgaris (taxid: 161934)

>sp|Q12522|IF6_YEAST Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF6 PE=1 SV=1

 Score =  196 bits (499), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 102/123 (82%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDR 123
           +DR
Sbjct: 121 IDR 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by the GTPase RIA1/EFL1 and by SDO1. Also required for pre-rRNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P56538|IF6_DROME Eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 106/123 (86%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R+ FEN+ ++GVF+KLTN +CLVAIGGSE+FYS FEAEL D IPVV  ++GG RIIG
Sbjct: 1   MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RL VGN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H D
Sbjct: 61  RLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDR 123
           LD+
Sbjct: 121 LDK 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|O55135|IF6_MOUSE Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2

 Score =  194 bits (493), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 104/123 (84%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FEN+CEVG F+KLTNA+CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Mus musculus (taxid: 10090)

>sp|Q3KRD8|IF6_RAT Eukaryotic translation initiation factor 6 OS=Rattus norvegicus GN=Eif6 PE=2 SV=1

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 103/123 (83%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FEN+CEVG F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Rattus norvegicus (taxid: 10116)

>sp|A4RSQ6|IF6_OSTLU Eukaryotic translation initiation factor 6 OS=Ostreococcus lucimarinus (strain CCE9901) GN=EIF6 PE=3 SV=2

 Score =  192 bits (487), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 85/123 (69%), Positives = 105/123 (85%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS E+GVF+ LTNA+CL A+GGSE+FYS FEAEL++ IPV+K S+ G R++G
Sbjct: 1   MAARHQFENSNEIGVFAALTNAYCLAAVGGSENFYSVFEAELSNEIPVIKASLAGTRLVG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RL VGNK+GLLLP + TDQE+ H+RNSLPD+V+VQR EERLSALGNC+ACNDHVAL H D
Sbjct: 61  RLSVGNKHGLLLPTSATDQEVMHIRNSLPDEVIVQRTEERLSALGNCVACNDHVALVHPD 120

Query: 121 LDR 123
           +D+
Sbjct: 121 IDQ 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Ostreococcus lucimarinus (strain CCE9901) (taxid: 436017)

>sp|P56537|IF6_HUMAN Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1

 Score =  192 bits (487), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 103/123 (83%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Homo sapiens (taxid: 9606)

>sp|B9PVB9|IF6_TOXGO Eukaryotic translation initiation factor 6 OS=Toxoplasma gondii GN=EIF6 PE=3 SV=2

 Score =  191 bits (486), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 106/123 (86%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FE+S EVGVF+KLTN++CLVA+GGSE FYST EAELA  IPVV  ++GG R+IG
Sbjct: 1   MATRAQFESSNEVGVFAKLTNSYCLVALGGSEHFYSTLEAELAPHIPVVHATVGGTRVIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+CVGN+ GL++P  TTDQELQHLRNSLPD V ++R+EERLSALGN +ACND+VAL HTD
Sbjct: 61  RVCVGNRRGLIVPSITTDQELQHLRNSLPDSVEIRRVEERLSALGNNVACNDYVALLHTD 120

Query: 121 LDR 123
           +D+
Sbjct: 121 MDK 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Toxoplasma gondii (taxid: 5811)

>sp|Q6GR45|IF6_XENLA Eukaryotic translation initiation factor 6 OS=Xenopus laevis GN=eif6 PE=2 SV=1

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 104/123 (84%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FEN+ E+G F+KLTN +CLVAIGGSE+FYS FE EL++ IPVV  SI G RIIG
Sbjct: 1   MAVRASFENNNEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETIPVVHASIAGCRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+CVGN++GL++P+ TTDQELQH+RNSLPD V +QR+EERLSALGN IACND+VAL H D
Sbjct: 61  RMCVGNRHGLMVPNNTTDQELQHMRNSLPDSVRIQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
225438420	245	PREDICTED: eukaryotic translation initia	0.931	0.502	0.934	1e-62
255583438	245	translation initiation factor, putative	0.931	0.502	0.926	5e-62
224094250	245	predicted protein [Populus trichocarpa]	0.931	0.502	0.918	9e-62
118480999	245	unknown [Populus trichocarpa]	0.901	0.485	0.918	1e-61
356530991	245	PREDICTED: eukaryotic translation initia	0.931	0.502	0.926	1e-61
356576589	245	PREDICTED: eukaryotic translation initia	0.931	0.502	0.918	1e-61
356559971	245	PREDICTED: eukaryotic translation initia	0.931	0.502	0.926	2e-61
297816866	245	EMB1624 [Arabidopsis lyrata subsp. lyrat	0.931	0.502	0.902	2e-61
255646745	245	unknown [Glycine max]	0.931	0.502	0.918	5e-61
15228161	245	Translation initiation factor IF6 [Arabi	0.931	0.502	0.894	8e-61

>gi|225438420|ref|XP_002276166.1| PREDICTED: eukaryotic translation initiation factor 6-2 isoform 1 [Vitis vinifera] gi|147840016|emb|CAN77181.1| hypothetical protein VITISV_038707 [Vitis vinifera] gi|296082575|emb|CBI21580.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/123 (93%), Positives = 118/123 (95%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FENSCEVGVFSKLTNA+CLVAIGGSESFYS FE+ELADVIPVVKTSIGG RIIG
Sbjct: 1   MATRLQFENSCEVGVFSKLTNAYCLVAIGGSESFYSVFESELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNK GLLLPHTTTDQELQHLRNSLPDQVVVQRIEE+LSALGNCIACNDHVALAHTD
Sbjct: 61  RLCAGNKKGLLLPHTTTDQELQHLRNSLPDQVVVQRIEEKLSALGNCIACNDHVALAHTD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583438|ref|XP_002532478.1| translation initiation factor, putative [Ricinus communis] gi|223527803|gb|EEF29902.1| translation initiation factor, putative [Ricinus communis]

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 114/123 (92%), Positives = 117/123 (95%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRLMFENSCEVGVFSKLTNA+CLVAIGGSESFYS FE+ELADVIPVVKTSI G RIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSAFESELADVIPVVKTSIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLLLPHTTTDQELQHLRNSLPD VVVQRIEERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDNVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDR 123
           LD+
Sbjct: 121 LDK 123

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094250|ref|XP_002310109.1| predicted protein [Populus trichocarpa] gi|118489313|gb|ABK96461.1| unknown [Populus trichocarpa x Populus deltoides] gi|222853012|gb|EEE90559.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 113/123 (91%), Positives = 119/123 (96%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRLMFENSCEVGVFSKLTNA+CLVAIGGSE+FYSTFEAEL DVIPVVKTSIGG+RIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSTFEAELGDVIPVVKTSIGGSRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNG+LLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGN +ACNDHVAL HTD
Sbjct: 61  RLCAGNKNGILLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNGVACNDHVALTHTD 120

Query: 121 LDR 123
           LD+
Sbjct: 121 LDK 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118480999|gb|ABK92453.1| unknown [Populus trichocarpa]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/123 (91%), Positives = 119/123 (96%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA+RL FEN+CEVGVFSKLTNA+CLVAIGGSESFYSTFEAELADVIPVVKTSI G RIIG
Sbjct: 1   MASRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+E+LSALGNCIACNDHVALAHTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDEKLSALGNCIACNDHVALAHTD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530991|ref|XP_003534062.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356530993|ref|XP_003534063.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/123 (92%), Positives = 117/123 (95%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSESFYS FEAELADVIPVVKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLLLPHTTTDQELQ LRNSLPDQVVVQRI+ERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576589|ref|XP_003556413.1| PREDICTED: eukaryotic translation initiation factor 6-2-like [Glycine max]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/123 (91%), Positives = 118/123 (95%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FEAELADVIPVVKTSIGG RI+G
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIVG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLCVGNKNGLLLPHT TDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCVGNKNGLLLPHTITDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDR 123
           LD+
Sbjct: 121 LDK 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559971|ref|XP_003548269.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356559973|ref|XP_003548270.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/123 (92%), Positives = 117/123 (95%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSESFYS FEAELA VIPVVKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELAGVIPVVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816866|ref|XP_002876316.1| EMB1624 [Arabidopsis lyrata subsp. lyrata] gi|297322154|gb|EFH52575.1| EMB1624 [Arabidopsis lyrata subsp. lyrata]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/123 (90%), Positives = 119/123 (96%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FE+ELADVIP+VKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACNDHVALAHTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALAHTD 120

Query: 121 LDR 123
           LD+
Sbjct: 121 LDK 123

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646745|gb|ACU23846.1| unknown [Glycine max]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/123 (91%), Positives = 116/123 (94%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTN +CLVAIGGSESFYS FEAELADVIPVVKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNTYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLLLPHTTTDQELQ LRNSLPDQVVVQRI+ERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228161|ref|NP_191121.1| Translation initiation factor IF6 [Arabidopsis thaliana] gi|75181414|sp|Q9M060.1|IF62_ARATH RecName: Full=Eukaryotic translation initiation factor 6-2; Short=AteIF-6;2 gi|7263550|emb|CAB81587.1| eukaryotic translation initiation factor 6 (EIF-6)-like protein [Arabidopsis thaliana] gi|22135944|gb|AAM91554.1| eukaryotic translation initiation factor 6 (EIF-6)-like protein [Arabidopsis thaliana] gi|32189303|gb|AAP75806.1| At3g55620 [Arabidopsis thaliana] gi|332645889|gb|AEE79410.1| Translation initiation factor IF6 [Arabidopsis thaliana]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 110/123 (89%), Positives = 119/123 (96%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FE+ELADVIP+VKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VALAHTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query: 121 LDR 123
           LD+
Sbjct: 121 LDK 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2078921	245	eIF6A "AT3G55620" [Arabidopsis	0.931	0.502	0.894	7.5e-57
MGI|MGI:1196288	245	Eif6 "eukaryotic translation i	0.931	0.502	0.723	1.3e-45
RGD|1305373	245	Eif6 "eukaryotic translation i	0.931	0.502	0.715	3.4e-45
SGD|S000006220	245	TIF6 "Constituent of 66S pre-r	0.931	0.502	0.723	3.4e-45
UNIPROTKB|P56537	245	EIF6 "Eukaryotic translation i	0.931	0.502	0.707	5.6e-45
UNIPROTKB|E2R1S5	242	EIF6 "Eukaryotic translation i	0.931	0.508	0.707	7.1e-45
FB|FBgn0034915	245	eIF6 "eIF6" [Drosophila melano	0.931	0.502	0.715	9.1e-45
UNIPROTKB|Q9TU47	245	EIF6 "Eukaryotic translation i	0.931	0.502	0.699	3.1e-44
CGD|CAL0001603	245	orf19.1815 [Candida albicans (	0.931	0.502	0.699	6.4e-44
POMBASE|SPCC1919.09	244	tif6 "translation initiation f	0.931	0.504	0.699	1.7e-43

TAIR|locus:2078921 eIF6A "AT3G55620" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 110/123 (89%), Positives = 119/123 (96%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FE+ELADVIP+VKTSIGG RIIG
Sbjct:     1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VALAHTD
Sbjct:    61 RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query:   121 LDR 123
             LD+
Sbjct:   121 LDK 123

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

MGI|MGI:1196288 Eif6 "eukaryotic translation initiation factor 6" [Mus musculus (taxid:10090)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 89/123 (72%), Positives = 104/123 (84%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CEVG F+KLTNA+CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDR 123
             LDR
Sbjct:   121 LDR 123

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005638 "lamin filament" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005882 "intermediate filament" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

RGD|1305373 Eif6 "eukaryotic translation initiation factor 6" [Rattus norvegicus (taxid:10116)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 88/123 (71%), Positives = 103/123 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CEVG F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDR 123
             LDR
Sbjct:   121 LDR 123

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

SGD|S000006220 TIF6 "Constituent of 66S pre-ribosomal particles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 89/123 (72%), Positives = 102/123 (82%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct:     1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct:    61 RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query:   121 LDR 123
             +DR
Sbjct:   121 IDR 123

GO:0043023 "ribosomal large subunit binding" evidence=IEA;IDA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA;IMP;IPI

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IDA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA;IGI

GO:0006364 "rRNA processing" evidence=IGI

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P56537 EIF6 "Eukaryotic translation initiation factor 6" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 87/123 (70%), Positives = 103/123 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDR 123
             LDR
Sbjct:   121 LDR 123

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E2R1S5 EIF6 "Eukaryotic translation initiation factor 6" [Canis lupus familiaris (taxid:9615)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 87/123 (70%), Positives = 102/123 (82%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE ELAD IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDR 123
             LDR
Sbjct:   121 LDR 123

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

FB|FBgn0034915 eIF6 "eIF6" [Drosophila melanogaster (taxid:7227)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 88/123 (71%), Positives = 106/123 (86%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R+ FEN+ ++GVF+KLTN +CLVAIGGSE+FYS FEAEL D IPVV  ++GG RIIG
Sbjct:     1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             RL VGN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H D
Sbjct:    61 RLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPD 120

Query:   121 LDR 123
             LD+
Sbjct:   121 LDK 123

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0006412 "translation" evidence=NAS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

UNIPROTKB|Q9TU47 EIF6 "Eukaryotic translation initiation factor 6" [Bos taurus (taxid:9913)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 86/123 (69%), Positives = 102/123 (82%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CE+G F+KLTN++CLVAIGGSE+FYS FE ELA  IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDR 123
             LDR
Sbjct:   121 LDR 123

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

CGD|CAL0001603 orf19.1815 [Candida albicans (taxid:5476)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 86/123 (69%), Positives = 102/123 (82%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MATR  FENS EVGVFS LTN++CLVA+GGSE+FYS FEAEL DVIP+V T+I G RI+G
Sbjct:     1 MATRTQFENSNEVGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+  GN+ GLL+P  TTDQEL HLRNSLPD + +QR+EERLSALGN I CND+VAL H D
Sbjct:    61 RMTSGNRRGLLVPTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPD 120

Query:   121 LDR 123
             ++R
Sbjct:   121 IER 123

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

POMBASE|SPCC1919.09 tif6 "translation initiation factor eIF6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 86/123 (69%), Positives = 103/123 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FENS E+GVFS LTN++ LVA+GGSE+FYS FEAEL DV+PVV T+IGG RIIG
Sbjct:     1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             RL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D
Sbjct:    61 RLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPD 120

Query:   121 LDR 123
             ++R
Sbjct:   121 IER 123

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P56538	IF6_DROME	No assigned EC number	0.7154	0.9318	0.5020	yes	no
P56537	IF6_HUMAN	No assigned EC number	0.7073	0.9318	0.5020	yes	no
Q5ASA6	IF6_EMENI	No assigned EC number	0.7235	0.9318	0.4979	yes	no
O55135	IF6_MOUSE	No assigned EC number	0.7235	0.9318	0.5020	yes	no
Q9M060	IF62_ARATH	No assigned EC number	0.8943	0.9015	0.4857	yes	no
Q551M2	IF6_DICDI	No assigned EC number	0.7154	0.9318	0.5040	yes	no
O81920	IF6_BETVU	No assigned EC number	0.8373	0.9090	0.6217	N/A	no
Q3KRD8	IF6_RAT	No assigned EC number	0.7154	0.9318	0.5020	yes	no
Q12522	IF6_YEAST	No assigned EC number	0.7235	0.9015	0.4857	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019318001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotgun sequence); (245 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)			•	•	•		•		0.978
	GSVIVG00016251001	SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_12, whole genome shot [...] (143 aa)	•			•			•		0.924
	GSVIVG00030059001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (146 aa)	•			•			•		0.921
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.906
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•	•		•		0.897
	GSVIVG00016611001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (120 aa)	•			•			•		0.883
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•	•		•		0.860
	GSVIVG00021667001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (168 aa)	•			•	•		•		0.859
	GSVIVG00019030001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (103 aa)				•			•		0.854
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•		•		0.852

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
PTZ00136	247	PTZ00136, PTZ00136, eukaryotic translation initiat	6e-79
smart00654	200	smart00654, eIF6, translation initiation factor 6	4e-62
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	3e-61
pfam01912	197	pfam01912, eIF-6, eIF-6 family	2e-57
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	5e-45
TIGR00323	216	TIGR00323, eIF-6, translation initiation factor eI	4e-37
PRK04046	222	PRK04046, PRK04046, translation initiation factor	7e-28
pfam01912	197	pfam01912, eIF-6, eIF-6 family	3e-05
smart00654	200	smart00654, eIF6, translation initiation factor 6	2e-04
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	8e-04
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	0.002
TIGR00323	216	TIGR00323, eIF-6, translation initiation factor eI	0.002
PRK04046	222	PRK04046, PRK04046, translation initiation factor	0.004

>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like protein; Provisional

 Score =  232 bits (594), Expect = 6e-79
 Identities = 92/123 (74%), Positives = 105/123 (85%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS ++GVFSKLTN++CLVA+GGSE+FYS FE+ELA  IPVV T+IGG R+IG
Sbjct: 1   MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RL VGN+ GLL+P   TDQELQHLRNSLPD V VQR+EERLSALGNCIACND+VAL H D
Sbjct: 61  RLTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPD 120

Query: 121 LDR 123
           LDR
Sbjct: 121 LDR 123

Length = 247

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score =  188 bits (479), Expect = 4e-62
 Identities = 81/121 (66%), Positives = 95/121 (78%), Gaps = 2/121 (1%)

Query: 3   TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRL 62
            RL FE S  +GV+ KLTN++CLV +GG E+FYS  E  L   +PVV TSIGG+R+IGRL
Sbjct: 1   DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRL 58

Query: 63  CVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLD 122
            VGN NGLL+P+TTTDQELQHLRNSLPD V VQR+EERL+ALGN I CNDH ALA  DL 
Sbjct: 59  TVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLS 118

Query: 123 R 123
           +
Sbjct: 119 K 119

Length = 200

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score =  186 bits (475), Expect = 3e-61
 Identities = 79/122 (64%), Positives = 95/122 (77%), Gaps = 2/122 (1%)

Query: 2   ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGR 61
           A RL FE S  +GVF+K TN++CLV  GG E+F S FE EL   +PVV+T+IGG+R++G 
Sbjct: 1   AIRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEEL--GVPVVRTTIGGSRLVGS 58

Query: 62  LCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDL 121
           L VGN NGLLLPHTTTDQELQH+RNSLPD+V V R++E LSALGN I CNDH AL H DL
Sbjct: 59  LTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDL 118

Query: 122 DR 123
            +
Sbjct: 119 SK 120

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score =  176 bits (448), Expect = 2e-57
 Identities = 65/120 (54%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 4   RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLC 63
           RL  E S  +GVF++ TN + LV  G SE FYS  E EL   + VV+TSI G+R++G L 
Sbjct: 1   RLSIEGSPNIGVFARATNDYALVPPGLSEEFYSVIEEELG--VEVVETSIAGSRLVGSLT 58

Query: 64  VGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDR 123
           VGN NGLL+P T TD+EL HL+ SL   V V+R+EE+L+ALGN I  ND  AL H DL R
Sbjct: 59  VGNSNGLLVPSTATDEELDHLKESL--DVNVERLEEKLTALGNVILANDKGALVHPDLSR 116

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score =  145 bits (368), Expect = 5e-45
 Identities = 52/123 (42%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  RL FE S  +GV++K T ++ LV  G  E F       L   +PVV+T+I G+R++G
Sbjct: 2   MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVG 59

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
            L  GN NGLL+P+   D+EL+ L+N     V V  +  +L+ALGN I  ND  AL H D
Sbjct: 60  ALTAGNSNGLLVPYGVRDEELRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPD 117

Query: 121 LDR 123
           L  
Sbjct: 118 LSD 120

Length = 222

>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative

 Score =  125 bits (315), Expect = 4e-37
 Identities = 63/121 (52%), Positives = 83/121 (68%), Gaps = 7/121 (5%)

Query: 4   RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLC 63
           R  F  + E+GV++K+T  + LV + GSE+FYS FE EL   +PV+ T+I G+ ++G L 
Sbjct: 1   RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGALT 58

Query: 64  VGNKNGLLLPHTTTDQELQHLRNSLPDQVV-VQRIEERLSALGNCIACNDHVALAHTDLD 122
           VGN  GLL+     DQ L H  +SLPD +V VQRIEERL+ALGN I CND+ ALA  +LD
Sbjct: 59  VGNSRGLLVS----DQVLDHELDSLPDSLVKVQRIEERLTALGNLILCNDYGALASPELD 114

Query: 123 R 123
           R
Sbjct: 115 R 115

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative [Protein synthesis, Translation factors]. Length = 216

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score =  101 bits (254), Expect = 7e-28
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  RL    S  +GV+++ T+ + LV     E      E  L  V  VV+T+I G+ ++G
Sbjct: 1   MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETL-GV-EVVETTIAGSSLVG 58

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
            L  GN NG+L+P    D+EL+ L+ +L   + V+ +  +L+ALGN I  ND  AL H +
Sbjct: 59  SLAAGNSNGILVPSIVLDEELELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPE 116

Query: 121 LDR 123
           L  
Sbjct: 117 LSD 119

Length = 222

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 38  FEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQ 95
            E  +ADV  + V + +I GN+ +G   V    G L+    T++EL+ L   L   V   
Sbjct: 118 TEEIIADVLGVEVFRGTIAGNKTVGSAGVATNKGGLVHPDATEEELEELSELLGVPVDAG 177

Query: 96  RIEERLSALGNCIACNDHVA 115
            +      +G  +  ND  A
Sbjct: 178 TVNRGSPLVGAGLVANDKGA 197

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 31  SESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88
           S       E  ++DV  + V + +I GN  +G  CV    G L+   T+++EL+ L   L
Sbjct: 114 SPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELKELSELL 173

Query: 89  PDQVVVQRIEERLSALGNCIACNDHVA 115
              +V   +      +G  +  ND+ A
Sbjct: 174 GVPLVAGTVNFGSEVVGAGLVANDNGA 200

Length = 200

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 38  FEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQ 95
            E E+ DV  + VV+ +I G   +G   V    G L+   T+D+EL+ L       V V 
Sbjct: 122 AEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVPVDVG 181

Query: 96  RIEERLSALGNCIACNDHVALA 117
            +      +G  +  N   AL 
Sbjct: 182 TVNFGSPYVGAGLVANSKGALV 203

Length = 222

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 38  FEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQ 95
            E  + DV  + V + +I G + +G   V    G L+   T+D+EL+ L       VV  
Sbjct: 122 AEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAG 181

Query: 96  RIEERLSALGNCIACNDHVALAHTD 120
            +      +G  +  N   A+  +D
Sbjct: 182 TVNFGSQYVGAGLVANSKGAVVGSD 206

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 36  STFEAELADV--IPVVKTSIGGNRIIGRLC-VGNKNGLLLPHTTTDQELQHLRNSLPDQV 92
              E  ++DV  + V + +I G   +G    V N+ GL+ P  T+ QE + L + L  ++
Sbjct: 115 RDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQ-TSVQEQEELSSLLGVEL 173

Query: 93  VVQRIEERLSALGNCIACNDHVALAHTD 120
           V   +    + +G C+  N   A+   D
Sbjct: 174 VAGTVNRGTTVVGACMVANSKGAVVGLD 201

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative [Protein synthesis, Translation factors]. Length = 216

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 41  ELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88
            + D   + V + +I G + +G   V    G L+    TD+EL+ L +  
Sbjct: 124 VIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLF 173

Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
smart00654	200	eIF6 translation initiation factor 6.	99.97
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	99.97
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	99.96
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	99.94

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=2.8e-41  Score=263.25  Aligned_cols=125  Identities=46%  Similarity=0.758  Sum_probs=107.9

Q ss_pred             eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (132)
Q Consensus         3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~   82 (132)
                      +|++|+||++||+|+++||+|||+||+++++.++.|++.|+  |++++|+|+|++++|+|++||+||+|+|+.++|+|++
T Consensus         1 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~   78 (199)
T PF01912_consen    1 QRLSFYGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELE   78 (199)
T ss_dssp             -EE-BTTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHH
T ss_pred             CeEEEeCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHH
Confidence            58999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      .|++.++ +++|.+++++++|+||+|+|||+||+|||+++++++|.|-
T Consensus        79 ~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~  125 (199)
T PF01912_consen   79 HLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIIS  125 (199)
T ss_dssp             HHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHH
T ss_pred             HHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHH
Confidence            9999998 9999999999999999999999999999999999998763

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4e-39  Score=252.32  Aligned_cols=126  Identities=41%  Similarity=0.608  Sum_probs=122.5

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |++|++|+|||+||+|+.+||+||++||+.+++.++.|+++|+  |++++++|+||+++|+|+++|+||+|+|+.+.|+|
T Consensus         2 mi~r~~~~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~E   79 (222)
T COG1976           2 MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEE   79 (222)
T ss_pred             ceEEEEecCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHH
Confidence            8899999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      ++.|++  +.+++|.+++++++|+||.|+||||||++||++++++.|.|-
T Consensus        80 l~~l~~--~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~  127 (222)
T COG1976          80 LRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIE  127 (222)
T ss_pred             HHhhcc--cCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHH
Confidence            999998  448999999999999999999999999999999999998874

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=4e-38  Score=252.20  Aligned_cols=130  Identities=71%  Similarity=1.085  Sum_probs=126.8

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |+.|++|+|||+||+|+++||+|||+||+.+++.++.+++.|+++|++++|+|+|++++|+|++||+||+|||+.++|+|
T Consensus         1 m~~r~~~~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (247)
T PTZ00136          1 MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQE   80 (247)
T ss_pred             CceeEEecCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHH
Confidence            89999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      ++.|++.++.+++|.+++++++|+||.++|||++|++||+++++.+|.|-
T Consensus        81 l~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~  130 (247)
T PTZ00136         81 LQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQ  130 (247)
T ss_pred             HHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHH
Confidence            99999999889999999999999999999999999999999999988763

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=9.9e-38  Score=243.68  Aligned_cols=126  Identities=64%  Similarity=1.000  Sum_probs=122.3

Q ss_pred             eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (132)
Q Consensus         3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~   82 (132)
                      .|++|+||+++|+|+++||+++++|+++++++++.|++.|+  |+++++++++++++|+++++||+|+|+||.++++|++
T Consensus         1 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~   78 (200)
T smart00654        1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQ   78 (200)
T ss_pred             CeEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHH
Confidence            38999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      .|++.|++++++.+++.+++++||.++||||||+|||++|++++|.|-
T Consensus        79 ~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~  126 (200)
T smart00654       79 HLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIIS  126 (200)
T ss_pred             HHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHH
Confidence            999999878999999999999999999999999999999999999874

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=1.7e-36  Score=239.80  Aligned_cols=125  Identities=34%  Similarity=0.552  Sum_probs=122.3

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |+.|++|+||+++|+|+++||++||+||++++++.+.|++.|+  |+++++++++++++|+|+++|++|+|+||.++++|
T Consensus         1 ~i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e   78 (222)
T PRK04046          1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEE   78 (222)
T ss_pred             CcEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHH
Confidence            8999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      ++.|++.|  ++++.+++.+.+++||.+++||+||++||+++++++|.|
T Consensus        79 ~~~l~e~L--~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i  125 (222)
T PRK04046         79 LELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVI  125 (222)
T ss_pred             HHHHHHhc--CceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHH
Confidence            99999999  788888888999999999999999999999999999987

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=2.6e-35  Score=235.96  Aligned_cols=121  Identities=21%  Similarity=0.283  Sum_probs=117.5

Q ss_pred             eCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864            8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS   87 (132)
Q Consensus         8 ~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~   87 (132)
                      ..-+++|||++|||++||+||+++++..+.|+|+|+  ||+++++|+++++||+++++||+|+|+||.++++|++.|+++
T Consensus        99 ~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~--VeVi~~tIag~~lVGs~~v~Nn~G~LVhP~~s~ee~~~i~d~  176 (247)
T PTZ00136         99 ERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLG--VEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSL  176 (247)
T ss_pred             CccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCCceEEEEEEEeCcEEEECCCCCHHHHHHHHHH
Confidence            356899999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           88 LPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        88 l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      |++++..+++++|.+.+|++++|||||++|||+++.+|+++|-
T Consensus       177 L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie  219 (247)
T PTZ00136        177 LQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIE  219 (247)
T ss_pred             hCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999874

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=6e-35  Score=231.04  Aligned_cols=124  Identities=18%  Similarity=0.161  Sum_probs=117.5

Q ss_pred             eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (132)
Q Consensus         3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~   82 (132)
                      .|++++|++++|+|+++||+++|+||.+++++++.|++.|+  |+++++++ +++++|+++++||+|+|+||.++++|++
T Consensus        47 ~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l~e~L~--v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~  123 (222)
T PRK04046         47 VETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELLKEALD--LNVEVLPS-KLTALGNLILANDKGALVHPELSDEARK  123 (222)
T ss_pred             EEEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHHHHhcC--ceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHH
Confidence            58899999999999999999999999999999999999999  99999999 9999999999999999999999999999


Q ss_pred             HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      .|++.|++++...++ .+.+++||+++||||||+|||+++++++++|-
T Consensus       124 ~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv~p~~t~~ei~~i~  170 (222)
T PRK04046        124 VIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLVHPDATDEELKFLE  170 (222)
T ss_pred             HHHHhhCceEEEEec-CCccceeeEEEEeCCEEEECCCCCHHHHHHHH
Confidence            999999655555555 99999999999999999999999999999863

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=1.5e-34  Score=228.57  Aligned_cols=128  Identities=15%  Similarity=0.145  Sum_probs=118.8

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |+.|++|+||+++|+|+++||+|+++|+.+++++++.|++.|+..|+++++.+.++ ++|+++++||+|+|+||.++++|
T Consensus        44 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e  122 (220)
T cd00527          44 PVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEA  122 (220)
T ss_pred             cEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHH
Confidence            78999999999999999999999999999999999999999986688999989988 99999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      ++.|++.|++++.+.++ .+++++||.++||||||+|||+++++++|.+-
T Consensus       123 ~~~i~~~L~v~V~~~~i-~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~  171 (220)
T cd00527         123 EEIIEDVLGVEVFRGTI-AGIKTVGSAGVLTNKGGLVHPKTSDEELEELS  171 (220)
T ss_pred             HHHHHHhcCCcEEEEEc-cCcccceeEEEEeccEEEECCCCCHHHHHHHH
Confidence            99999999665555544 56999999999999999999999999998763

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=6.8e-34  Score=224.86  Aligned_cols=125  Identities=62%  Similarity=0.991  Sum_probs=116.9

Q ss_pred             eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (132)
Q Consensus         3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~   82 (132)
                      +|++|+|+|+||+|+++||+|||+||+++++..+.|++.|+  +++++++++|++++|+|+++|++|+|+|+.++++|++
T Consensus         2 ~~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~   79 (220)
T cd00527           2 IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQ   79 (220)
T ss_pred             eeEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHH
Confidence            69999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      .|++.|+.++++.+.+.+.+++||++++||+|+++||.+++++++.|
T Consensus        80 ~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i  126 (220)
T cd00527          80 HIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEII  126 (220)
T ss_pred             HHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHH
Confidence            99999965566655544444999999999999999999999999876

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=1.2e-33  Score=222.88  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=116.8

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |+.|++|+||++||+|+++||+++++|++.++++.+.|++.|+  |+++++++   +++|+++++||+|+|+||.++++|
T Consensus        42 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e  116 (215)
T TIGR00323        42 PVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDT  116 (215)
T ss_pred             cEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHH
Confidence            7899999999999999999999999999999999999999999  99999999   999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEec-CCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~-~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      ++.|++.|+  +++.+.+ .+.+++||.+++||+||+|||+++++++|.|-
T Consensus       117 ~~~i~~~L~--v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~  165 (215)
T TIGR00323       117 EELISDVLG--VEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELS  165 (215)
T ss_pred             HHHHHHhcC--CcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHH
Confidence            999999995  4666666 89999999999999999999999999999863

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-33  Score=221.72  Aligned_cols=118  Identities=23%  Similarity=0.194  Sum_probs=115.0

Q ss_pred             CCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhCC
Q 032864           10 SCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLP   89 (132)
Q Consensus        10 s~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l~   89 (132)
                      .+++||.++|||++||+||+++++..+.|+|+|+  ||++|.+|+|.++||++++.||+|+|+||.++++|+|+|+++|+
T Consensus        98 ~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~Lg--Vev~rgtIag~~tVGsa~v~tnkG~LvhP~~s~~Ele~Lse~f~  175 (222)
T COG1976          98 LNALGNLILANDKGALVHPDLSDEAEKEIEDVLG--VEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFG  175 (222)
T ss_pred             ccccccEEEecCceeEecCccCHHHHHHHHhhcc--eEEEEEEecCccceeeEEEEecCcceeCCCCCHHHHHHHHHHhC
Confidence            4789999999999999999999999999999999  99999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           90 DQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        90 ~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      ++++++|+|+|.+++|++++||||||+|+-+++-.|+-+|
T Consensus       176 V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rI  215 (222)
T COG1976         176 VPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARI  215 (222)
T ss_pred             eeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHH
Confidence            9999999999999999999999999999999999888765

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=3.1e-32  Score=214.79  Aligned_cols=120  Identities=50%  Similarity=0.813  Sum_probs=115.6

Q ss_pred             EEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHH
Q 032864            4 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQH   83 (132)
Q Consensus         4 ~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~   83 (132)
                      |++|+|||+||+|+++||+||++||+++++..+.|++.|+  |++++++++|++++|.|+++|++|+++|+..++++++.
T Consensus         1 ~~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~   78 (215)
T TIGR00323         1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDS   78 (215)
T ss_pred             CeeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHh
Confidence            6899999999999999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           84 LRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        84 l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      |++.+    ++..++.+++++||++++||+|+++||.+++++++.|
T Consensus        79 l~e~l----~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i  120 (215)
T TIGR00323        79 LPDSL----KVQRIEERLTALGNNILCNDYGALASPELDRDTEELI  120 (215)
T ss_pred             hHhhc----CeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHH
Confidence            99876    6777888889999999999999999999999999876

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>smart00654 eIF6 translation initiation factor 6

Probab=99.97  E-value=4.8e-31  Score=206.04  Aligned_cols=126  Identities=16%  Similarity=0.140  Sum_probs=117.5

Q ss_pred             eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (132)
Q Consensus         3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~   82 (132)
                      .++++.+++++|+++++||+++|+||.+++++++.|++.|++.++|.+.... .+++|+++++||+|+|+||.++++|++
T Consensus        45 ~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~i~~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~  123 (200)
T smart00654       45 VHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEE  123 (200)
T ss_pred             EEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHHHHHhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHH
Confidence            5678999999999999999999999999999999999999644677666655 999999999999999999999999999


Q ss_pred             HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      .|++.|++++..+++ .+.+++|++++|||||++|||+++++|+++|-
T Consensus       124 ~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv~~~tt~~El~~ie  170 (200)
T smart00654      124 IISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLVHPDTSEEELKELS  170 (200)
T ss_pred             HHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEECCCCCHHHHHHHH
Confidence            999999999999999 99999999999999999999999999999863

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=99.97  E-value=7.4e-32  Score=210.40  Aligned_cols=105  Identities=20%  Similarity=0.259  Sum_probs=90.1

Q ss_pred             CCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhC
Q 032864            9 NSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL   88 (132)
Q Consensus         9 gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l   88 (132)
                      ..+++||+++|||++|++||+++++..+.|+|+|+  |||++.+|++.++||+++++||+|+|+||.++++|+++|+++|
T Consensus        95 k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~Lg--VeV~~~tia~~~~VGs~~v~tn~G~LvhP~~s~eEl~~l~~~l  172 (199)
T PF01912_consen   95 KLTALGNLILANDKGALVHPELSKETIEIISDVLG--VEVFRGTIAGIKTVGSAAVATNKGGLVHPDASEEELEELEELL  172 (199)
T ss_dssp             SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHT--SEEEE--BTTBS-CCCSEEE-SSEEEE-TT--HHHHHHHHHHH
T ss_pred             eeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcC--ceEEEEEecCcccceeeEEEeCcEEEECCCCCHHHHHHHHHHh
Confidence            45789999999999999999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEecCCcCcceeEEEEeCceE
Q 032864           89 PDQVVVQRIEERLSALGNCIACNDHVA  115 (132)
Q Consensus        89 ~~~v~v~~v~~~~~avGn~ilaNd~ga  115 (132)
                      +++++++|+|+|.+++|++++||||||
T Consensus       173 ~v~~~~GTVN~Gs~~VgsGlvaN~~g~  199 (199)
T PF01912_consen  173 GVPVDIGTVNRGSPFVGSGLVANDKGA  199 (199)
T ss_dssp             TSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred             CCceeeeeecCCCCceeEEEEeccccC
Confidence            999999999999999999999999997

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=9.7e-30  Score=197.91  Aligned_cols=130  Identities=76%  Similarity=1.179  Sum_probs=127.1

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |..|+.|.||+.||+|...++.||++...-++..+..++..|++.++++.++|++++.+|++++||.+|+|||..++|+|
T Consensus         1 Ma~R~qfens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqE   80 (245)
T KOG3185|consen    1 MALRVQFENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQE   80 (245)
T ss_pred             CceeeeecCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHH
Confidence            88899999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      ++.|+++||+.|.+.|++.+++|+||+|.|||+-|+|||++++|+.|.|.
T Consensus        81 lqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~  130 (245)
T KOG3185|consen   81 LQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIA  130 (245)
T ss_pred             HHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHH
Confidence            99999999999999999999999999999999999999999999988764

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.7e-26  Score=179.83  Aligned_cols=117  Identities=18%  Similarity=0.243  Sum_probs=113.4

Q ss_pred             CcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhCCC
Q 032864           11 CEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD   90 (132)
Q Consensus        11 ~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l~~   90 (132)
                      +++||.|+|||.+||+||+++++..++|+|+|+  |||+|.+|++..+||++++.+|+|++|||.++-+++++|+++|++
T Consensus       102 sALGNviaCNDyvAlvH~dldketEeii~dVL~--VeVfRqtia~n~LvGsyc~lsnqG~lVhp~Ts~e~q~Els~LlqV  179 (245)
T KOG3185|consen  102 SALGNVIACNDYVALVHPDLDKETEEIIADVLK--VEVFRQTIAQNSLVGSYCALSNQGGLVHPRTSVEDQDELSSLLQV  179 (245)
T ss_pred             hhhcCEEEecceeEEecCccchhHHHHHHHHhh--eeeeeecccCCceeeeeEEEcCCCceecCCCCHHHHHHHHHHhcc
Confidence            689999999999999999999999999999999  999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           91 QVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        91 ~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      ++..+++|+|...+|.++++|||-|+++-+++.-|+..+
T Consensus       180 plVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsVi  218 (245)
T KOG3185|consen  180 PLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVI  218 (245)
T ss_pred             ceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHH
Confidence            999999999999999999999999999999998877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
3j2i_B	245	Structure Of Late Pre-60s Ribosomal Subunits With N		3e-51
1g62_A	224	Crystal Structure Of S.Cerevisiae Eif6 Length = 224		4e-51
4a18_J	248	T.Thermophila 60s Ribosomal Subunit In Complex With		7e-44
1g61_A	228	Crystal Structure Of M.Jannaschii Eif6 Length = 228		1e-09
4adx_I	222	The Cryo-Em Structure Of The Archaeal 50s Ribosomal		2e-09

>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear Export Factor Arx1 Bound At The Peptide Exit Tunnel Length = 245

Iteration: 1
 Score =  196 bits (499), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 102/123 (82%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDR 123
           +DR
Sbjct: 121 IDR 123

>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6 Length = 224

Iteration: 1
 Score =  196 bits (497), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 102/123 (82%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDR 123
           +DR
Sbjct: 121 IDR 123

>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 248

Iteration: 1
 Score =  171 bits (434), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 100/123 (81%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS ++GVF KLT+A+CLV++G SE+FYS FE+EL   IPV+ TSIGG RI+G
Sbjct: 4   MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVG 63
Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GNKNGLL+P+T  D EL+++RNSLPD V V+RIEE+LSALGNC+  ND+VAL H D
Sbjct: 64  RVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPD 123
Query: 121 LDR 123
           LDR
Sbjct: 124 LDR 126

>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6 Length = 228

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEA-ELADVIPV--VKTSIGGNR 57
           M  R  F     +GV +  T    L+ I     F    +  E+++V+    ++T+IGG+ 
Sbjct: 3   MIIRKYFSGIPTIGVLALTTEEITLLPI-----FLDKDDVNEVSEVLETKCLQTNIGGSS 57
Query: 58  IIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHV 114
           ++G L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  
Sbjct: 58  LVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKG 117
Query: 115 ALAHTDL 121
           AL   +L
Sbjct: 118 ALISPEL 124

>pdb|4ADX|I Chain I, The Cryo-Em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6 Length = 222

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  R+    +  +GV+  +T++  L+     E F       L   + V+K SI G+ + G
Sbjct: 1   MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNG 58
Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAH 118
            L VGN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+A 
Sbjct: 59  ALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVAS 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	2e-52
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	1e-12
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	5e-51
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	1e-12
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	3e-47
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	4e-07
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	2e-45
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	7e-08

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score =  164 bits (416), Expect = 2e-52
 Identities = 89/123 (72%), Positives = 102/123 (82%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDR 123
           +DR
Sbjct: 121 IDR 123

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 31  SESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88
                   E  ++DV  + V + +I GN ++G  C  +  G L+   T+ Q+ + L + L
Sbjct: 118 HPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLL 177

Query: 89  PDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
              +V   +    S +G  +  ND++A+   D
Sbjct: 178 QVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLD 209

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score =  161 bits (408), Expect = 5e-51
 Identities = 80/123 (65%), Positives = 100/123 (81%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS ++GVF KLT+A+CLV++G SE+FYS FE+EL   IPV+ TSIGG RI+G
Sbjct: 4   MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVG 63

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GNKNGLL+P+T  D EL+++RNSLPD V V+RIEE+LSALGNC+  ND+VAL H D
Sbjct: 64  RVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPD 123

Query: 121 LDR 123
           LDR
Sbjct: 124 LDR 126

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score = 61.5 bits (149), Expect = 1e-12
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 31  SESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88
                   E  +AD   + V +T+I  N ++G  CV N  G L+    + +EL  L N L
Sbjct: 121 HPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLL 180

Query: 89  PDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
              +    I      +G  +  ND  A    D
Sbjct: 181 QIPLCAGTINRGSDVIGAGLVVNDWAAFCGLD 212

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score =  151 bits (382), Expect = 3e-47
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  R  F     +GV +  T    L+ I   +   +     L      ++T+IGG+ ++G
Sbjct: 3   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALA 117
            L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL 
Sbjct: 61  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 120

Query: 118 HTDLDR 123
             +L  
Sbjct: 121 SPELKD 126

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 35  YSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLP-DQ 91
              F+ ++ D   + V   +I     +G   V    G L      D EL+ L++    + 
Sbjct: 124 LKDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEY 183

Query: 92  VVVQRIEERLSALGNCIACNDHVALAHTD 120
           +      +  +++G CI  N   A+   D
Sbjct: 184 IGKGTANKGTTSVGACIIANSKGAVVGGD 212

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score =  146 bits (369), Expect = 2e-45
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  R+    +  +GV+  +T++  L+     E F       L   + V+K SI G+ + G
Sbjct: 1   MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNG 58

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
            L VGN NG ++ +   D+E+  L  +  +     RI ER +A+GN +  ND+ A+A   
Sbjct: 59  ALAVGNSNGFVVSNQAMDREIDALAAAGVE---AVRIPERFTAVGNLVLANDNGAVASPL 115

Query: 121 LDR 123
           L  
Sbjct: 116 LSD 118

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score = 48.0 bits (114), Expect = 7e-08
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 31  SESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88
           S          + DV  + V  +++ G  I+G +      G LL    + +E+  + ++L
Sbjct: 113 SPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTL 172

Query: 89  PDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             +  V  +   ++ +G C   N +  L   +
Sbjct: 173 GVEADVGTVNHGVTLIGACSVANSNGVLVGEE 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	99.96

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=100.00  E-value=2.5e-39  Score=258.19  Aligned_cols=129  Identities=62%  Similarity=1.000  Sum_probs=126.7

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |++|++|+||++||+|+++||+|||+||+.+++.++.+++.|++++++++++|+|++++|+|++||+||+|||+.++|+|
T Consensus         4 M~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E   83 (248)
T 4a18_J            4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNE   83 (248)
T ss_dssp             CEEEECBTTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHH
T ss_pred             ceEEEeecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHH
Confidence            89999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      +++|+++||.++++.+++++++|+||.++|||++|+|||+++++++|.|
T Consensus        84 l~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I  132 (248)
T 4a18_J           84 LRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEII  132 (248)
T ss_dssp             HHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHH
T ss_pred             HHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999998876

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=100.00  E-value=6.5e-39  Score=252.81  Aligned_cols=129  Identities=70%  Similarity=1.077  Sum_probs=126.7

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |+.|++|+||++||+|+++||+|||+||+.+++.++.+++.|++++++++++|+|++++|+|++||+||+|||+.++|+|
T Consensus         1 m~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (224)
T 1g62_A            1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE   80 (224)
T ss_dssp             CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CceEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHH
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      ++.|++.|+.+++|.+++++++++||.++|||++|+|||+++++..+.|
T Consensus        81 l~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i  129 (224)
T 1g62_A           81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELI  129 (224)
T ss_dssp             HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHH
T ss_pred             HHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHH
Confidence            9999999998999999999999999999999999999999999998876

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.5e-36  Score=239.14  Aligned_cols=125  Identities=30%  Similarity=0.484  Sum_probs=121.5

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |++|++|+||++||+|+++||+|||+||+.+++.++.+++.|+  +++++++|+|+++||.|+++|++|+|+|+.++|+|
T Consensus         1 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e   78 (222)
T 4adx_I            1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDRE   78 (222)
T ss_pred             CcEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHH
Confidence            9999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      ++.|++.   ++++.+++.+++++||+++|||+||+|||+++++++|.|-
T Consensus        79 ~~~l~~~---~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~  125 (222)
T 4adx_I           79 IDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIG  125 (222)
T ss_pred             HHHHHhc---CCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHH
Confidence            9999993   7888999999999999999999999999999999998764

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=100.00  E-value=2.1e-37  Score=247.16  Aligned_cols=120  Identities=21%  Similarity=0.274  Sum_probs=116.6

Q ss_pred             eCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864            8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS   87 (132)
Q Consensus         8 ~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~   87 (132)
                      ..-+++|||++|||++||+||+++++..+.|+|+|+  |||++++|+++++||+++++||+|+||||.++++|+++|+++
T Consensus       102 ~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~Lg--VeV~~~tIags~lVGs~~v~Nn~G~LVhp~~s~eEl~~L~~~  179 (248)
T 4a18_J          102 EKLSALGNCVVANDYVALIHPDLDRESEEIIADTLG--VEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANL  179 (248)
T ss_dssp             CSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHEEECSSCEEECTTCCHHHHHHHHHH
T ss_pred             CccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcC--CcEEEEEcCCcceeEEEEEEeCCeEEECCCCCHHHHHHHHHH
Confidence            346899999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           88 LPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        88 l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      |++++..+++|.|.+++|++++||||||+|||+++++|+++|
T Consensus       180 l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~I  221 (248)
T 4a18_J          180 LQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVV  221 (248)
T ss_dssp             HTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHH
T ss_pred             hCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999876

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=100.00  E-value=3.7e-36  Score=237.06  Aligned_cols=120  Identities=20%  Similarity=0.234  Sum_probs=116.9

Q ss_pred             CCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhC
Q 032864            9 NSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL   88 (132)
Q Consensus         9 gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l   88 (132)
                      .-+++|||++|||++||+||+++++..+.|+|+|+  ||+++++|+|+++||+++++||+|+||||.++++|++.|+++|
T Consensus       100 ~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~--VeV~~~tIag~~lVGs~~v~nn~G~LVhP~~s~ee~~~i~d~L  177 (224)
T 1g62_A          100 RLSALGNVICCNDYVALVHPDIDRETEELISDVLG--VEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLL  177 (224)
T ss_dssp             CSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHT--SEEEECCBTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHH
T ss_pred             cCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCcceEEEEEEEeCcEEEECCCCCHHHHHHHHHHh
Confidence            46899999999999999999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           89 PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        89 ~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      ++++..+|+|.|.+.+|++++|||||++|||+++.+|+++|-
T Consensus       178 ~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie  219 (224)
T 1g62_A          178 QVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIE  219 (224)
T ss_dssp             TSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHH
T ss_pred             CCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999763

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.2e-34  Score=228.42  Aligned_cols=125  Identities=17%  Similarity=0.229  Sum_probs=121.3

Q ss_pred             eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (132)
Q Consensus         3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~   82 (132)
                      .++. .+++++|+++++||++||+||++++++++.|+|+|+  |++.+.++++.+++|+++++||+|+||||.++++|++
T Consensus        90 ~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~--VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~  166 (222)
T 4adx_I           90 VRIP-ERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLE--VDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIG  166 (222)
T ss_pred             EEEC-CCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhC--ccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHH
Confidence            4566 899999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      .|+++|++++..+|++.|.+++|++++|||||++|||+++++|+++|-
T Consensus       167 ~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie  214 (222)
T 4adx_I          167 IIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIE  214 (222)
T ss_pred             HHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999873

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=100.00  E-value=8.6e-36  Score=235.62  Aligned_cols=125  Identities=32%  Similarity=0.428  Sum_probs=120.5

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |+.|++|+||++||+|+++||+|||+||+.+++.++.+++.|+  +++++++|+|+++||.|+++|++|+|+|+.++|+|
T Consensus         3 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e   80 (228)
T 1g61_A            3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE   80 (228)
T ss_dssp             CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             ceeEEEEcCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHH
Confidence            8899999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhC---CCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhh
Q 032864           81 LQHLRNSL---PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLL  128 (132)
Q Consensus        81 l~~l~~~l---~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~  128 (132)
                      ++.|++.|   +.++++.+++.+.+++||+++|||+||+|||++ ++..|.
T Consensus        81 ~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~  130 (228)
T 1g61_A           81 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKD  130 (228)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHH
T ss_pred             HHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHH
Confidence            99999988   578999999999999999999999999999999 766554

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=99.96  E-value=1.6e-30  Score=205.55  Aligned_cols=120  Identities=19%  Similarity=0.236  Sum_probs=116.3

Q ss_pred             eCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864            8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS   87 (132)
Q Consensus         8 ~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~   87 (132)
                      .+++++|+++++||++||+||++ ++..+.|+|+|+  |++.+.++++..++|+.++.+|+|+|+||.++++|++.|+++
T Consensus       102 ~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~--veV~~~~i~~~~tvg~n~v~tN~G~LVhP~~s~ee~~~i~d~  178 (228)
T 1g61_A          102 SKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN--VEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSL  178 (228)
T ss_dssp             CSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHC--SEEEECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHH
T ss_pred             CCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcC--CceEEEEeCCccceeeEEEEecceEEECCCCCHHHHHHHHHh
Confidence            48999999999999999999999 999999999999  999999999999999999999999999999999999999999


Q ss_pred             CCCC-eeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           88 LPDQ-VVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        88 l~~~-v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      |+++ +..+|++.|.+.+|++++|||||++|||+++.+|+++|-
T Consensus       179 L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie  222 (228)
T 1g61_A          179 FKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIE  222 (228)
T ss_dssp             HTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHH
T ss_pred             cCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHH
Confidence            9999 889999999999999999999999999999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	6e-61
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	7e-08
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	1e-53
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	4e-07

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  184 bits (469), Expect = 6e-61
 Identities = 89/123 (72%), Positives = 102/123 (82%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDR 123
           +DR
Sbjct: 121 IDR 123

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (112), Expect = 7e-08
 Identities = 19/75 (25%), Positives = 37/75 (49%)

Query: 46  IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALG 105
           + V + +I GN ++G  C  +  G L+   T+ Q+ + L + L   +V   +    S +G
Sbjct: 135 VEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVG 194

Query: 106 NCIACNDHVALAHTD 120
             +  ND++A+   D
Sbjct: 195 AGMVVNDYLAVTGLD 209

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  166 bits (421), Expect = 1e-53
 Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  R  F     +GV +  T    L+ I   +   +     L      ++T+IGG+ ++G
Sbjct: 1   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 58

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALA 117
            L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL 
Sbjct: 59  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 118

Query: 118 HTDLD 122
             +L 
Sbjct: 119 SPELK 123

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 36  STFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVV 93
             F+ ++ D   + V   +I     +G   V    G L      D EL+ L++    + +
Sbjct: 123 KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYI 182

Query: 94  -VQRIEERLSALGNCIACNDHVALAHTD 120
                 +  +++G CI  N   A+   D
Sbjct: 183 GKGTANKGTTSVGACIIANSKGAVVGGD 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	100.0
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	99.97

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-41  Score=261.47  Aligned_cols=130  Identities=69%  Similarity=1.066  Sum_probs=126.5

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |++|++|+||++||+|+++||+|||+||+.+++..+.+++.|+..+|+++++|+|++++|+|++||+||+|||+.++|+|
T Consensus         1 M~~r~~f~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~E   80 (224)
T d1g62a_           1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE   80 (224)
T ss_dssp             CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHH
Confidence            99999999999999999999999999999999999999999975589999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV  130 (132)
Q Consensus        81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~  130 (132)
                      +++|++.++.+++|.+++.+++|+||+|+|||+||+|||+++++++|.|-
T Consensus        81 l~~L~~~l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~  130 (224)
T d1g62a_          81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELIS  130 (224)
T ss_dssp             HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHH
T ss_pred             HHHHHhhCCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998763

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=9.5e-40  Score=255.59  Aligned_cols=126  Identities=32%  Similarity=0.434  Sum_probs=120.5

Q ss_pred             CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (132)
Q Consensus         1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E   80 (132)
                      |+.|++|+|||+||+|+++||+|||+||+++++.++.|++.|+  +|+++++|+|++++|+|++||+||+|||+.++|+|
T Consensus         1 Mi~r~~~~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~--v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E   78 (225)
T d1g61a_           1 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE   78 (225)
T ss_dssp             CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHH
Confidence            9999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCC---CeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           81 LQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        81 l~~l~~~l~~---~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      +++|+++|+.   +++|.+++++++|+||+|+|||+||+|||+++ ++.|.|
T Consensus        79 l~~l~~~l~~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l~-e~~e~I  129 (225)
T d1g61a_          79 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELK-DFKKDI  129 (225)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGG-GGHHHH
T ss_pred             HHHHHhhcccccCCceEEEeCCcccccccEEEEcCcceEeccccc-hHHHHH
Confidence            9999999753   59999999999999999999999999999994 566654

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=220.59  Aligned_cols=119  Identities=20%  Similarity=0.242  Sum_probs=116.0

Q ss_pred             CCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhC
Q 032864            9 NSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL   88 (132)
Q Consensus         9 gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l   88 (132)
                      .-+++||+++|||++|++||+++++..+.|+|+|+  ||+++.+|++..+||+++++||+|+|+||.++++|+++|+++|
T Consensus       100 ~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~--Vev~~~tiag~~~VGs~~v~tn~G~LvhP~~t~~E~~~l~~~l  177 (224)
T d1g62a_         100 RLSALGNVICCNDYVALVHPDIDRETEELISDVLG--VEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLL  177 (224)
T ss_dssp             CSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHT--SEEEECCBTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHH
T ss_pred             CccccccEEEEcccceEecCCCCHHHHHHHHHHhC--ceEEEEEecCccceeeEEEEcCCceeecCCCCHHHHHHHHHHh
Confidence            45899999999999999999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           89 PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        89 ~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      ++++.++|+|+|.+++|++++||||||+|+.+++-.|+.+|
T Consensus       178 ~V~~~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~I  218 (224)
T d1g62a_         178 QVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVI  218 (224)
T ss_dssp             TSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHH
T ss_pred             CCCcccceeeCCCCCceeEEEEcCceEEEcCCCCcHHHHHH
Confidence            99999999999999999999999999999999999998776

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=9.6e-33  Score=215.68  Aligned_cols=118  Identities=19%  Similarity=0.245  Sum_probs=113.4

Q ss_pred             CCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhC
Q 032864            9 NSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL   88 (132)
Q Consensus         9 gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l   88 (132)
                      .-+++||+++|||++|++||++ ++..+.|+|+|+  ||+++.+|++..+||+++++||+|+|+||.++++|+++|+++|
T Consensus       101 ~~nAlGN~I~~ND~~Alv~p~l-~e~~e~I~dvL~--Vev~r~~iag~~~VGs~~v~tn~G~LvhP~~s~~E~~~l~~~l  177 (225)
T d1g61a_         101 KNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN--VEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLF  177 (225)
T ss_dssp             SSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHC--SEEEECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHHH
T ss_pred             cccccccEEEEcCcceEecccc-chHHHHHHHhhC--ceEEEEEeCCcccceeEEEEeccceEECCCCCHHHHHHHHHHh
Confidence            5689999999999999999999 577899999999  9999999999999999999999999999999999999999999


Q ss_pred             CCC-eeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864           89 PDQ-VVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC  129 (132)
Q Consensus        89 ~~~-v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i  129 (132)
                      +++ ++++|+|+|.+++|++++||||||+|+.+++-.|+.+|
T Consensus       178 ~V~~v~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~I  219 (225)
T d1g61a_         178 KVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLII  219 (225)
T ss_dssp             TCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHH
T ss_pred             CCCcccccceeCCCCCceeEEEEcCceEEEcCCCchHHHHHH
Confidence            998 68999999999999999999999999999999998776