Citrus Sinensis ID: 032876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHcccccccccccHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHcccccccccccccHHcccccHHHHHHHHccccEEHHHHHccccccccccccccccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
MRASKFSAFSLLLAAIILAVHVasssssgvdfdglghqlgfipvksecrgsiaecmsvegddgdqeLDLEFAMDGEINRRILAMRRYISYGalrrnsvpcsrrgasyyncraggqanpysrgcsaitrcrr
Flexible Loop (DISEMBL)
MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRYISYGalrrnsvpcsrRGASYyncraggqanpysrgcsaitrcrr
Low Complexity Region (SEG)
MRaskfsafslllaaiilavhvasssssGVDFDGLGHQLGFIPVKSECRGSIAECMSVegddgdqeldleFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR
Disordered region (IsUnstruct)
*****FSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQA***************
Disordered Region (DISOPRED)
******S**SLLLAAIILAVHVASSS********LG**LGFIPV*SECRGSIAECMSVEGD************************RYISYGALRRNSVP***********************CSAITRCR*
Disordered Region (DISEMBL)
MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR
Disordered Region (DISPRO)
****KFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG**********FAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAIT*CRR
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q8L9P8	116	Protein RALF-like 33 OS=A	yes	no	0.854	0.965	0.548	6e-32
Q9LUS7	138	Rapid alkalinization fact	no	no	0.877	0.833	0.628	6e-32
Q9SRY3	120	Protein RALF-like 1 OS=Ar	no	no	0.839	0.916	0.503	8e-27
Q945T0	115	Rapid alkalinization fact	N/A	no	0.793	0.904	0.532	4e-24
Q9MA62	119	Protein RALF-like 22 OS=A	no	no	0.450	0.495	0.796	2e-22
Q6NME6	110	Protein RALF-like 19 OS=A	no	no	0.519	0.618	0.630	1e-18
Q9FZA0	110	Protein RALF-like 4 OS=Ar	no	no	0.580	0.690	0.564	4e-16
Q2HIM9	113	Protein RALF-like 31 OS=A	no	no	0.511	0.592	0.552	2e-14
Q9LK37	118	Protein RALF-like 24 OS=A	no	no	0.427	0.474	0.637	1e-13
Q9FHA6	129	Protein RALF-like 34 OS=A	no	no	0.534	0.542	0.558	1e-12

>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 88/135 (65%), Gaps = 23/135 (17%)

Query: 1   MRASKFSAFSLLLAAIILAVH----VASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECM 56
           MR       ++++A  IL VH      +S SSG           F+P++S+C G+IAEC 
Sbjct: 1   MRGLSTKPVAIIIA--ILTVHFLFAAVTSQSSG----------DFVPIESKCNGTIAECS 48

Query: 57  SVEGDDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQA 116
               ++       EF MD EINRRILA  +YISYGALRRN+VPCSRRGASYYNCR G QA
Sbjct: 49  LSTAEE-------EFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 101

Query: 117 NPYSRGCSAITRCRR 131
           NPYSRGCSAITRCRR
Sbjct: 102 NPYSRGCSAITRCRR 116

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 93/132 (70%), Gaps = 17/132 (12%)

Query: 9   FSLLLAAIILAVHVASS--SSSGVDFDGLGHQLGFIPVKSECRGSIAECM--SVEGDDGD 64
           F++LL   ILAVH  S   SS   +F G      F P ++ECRG+IAEC   +  GD GD
Sbjct: 14  FAILL---ILAVHNWSVAVSSQSTEFAG-----DFPPFETECRGTIAECSVSAALGDGGD 65

Query: 65  -----QELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPY 119
                 E+  EF MD EINRRILA RRYISYGALRRN++PCSRRGASYYNCR G QANPY
Sbjct: 66  LFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPY 125

Query: 120 SRGCSAITRCRR 131
           SRGCSAITRCRR
Sbjct: 126 SRGCSAITRCRR 137

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1

 Score =  118 bits (296), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 78/129 (60%), Gaps = 19/129 (14%)

Query: 8   AFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSE------CRGSIAECMSVEGD 61
           +F+L L   IL V + SS        G  + LG +   +       C GSIAEC+  E +
Sbjct: 4   SFTLFLTLTILVVFIISSPPVQA---GFANDLGGVAWATTGDNGSGCHGSIAECIGAEEE 60

Query: 62  DGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSR 121
           +          MD EINRRILA  +YISY +L+RNSVPCSRRGASYYNC+ G QANPYSR
Sbjct: 61  E----------MDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSR 110

Query: 122 GCSAITRCR 130
           GCS I RCR
Sbjct: 111 GCSKIARCR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length).

Arabidopsis thaliana (taxid: 3702)

>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 85/124 (68%), Gaps = 20/124 (16%)

Query: 11  LLLAAIILA--VHVASSSSSGVDFDGLGHQLGFIPVKSE--CRGSIAECMSVEGDDGDQE 66
           L+L  +I A  + +A++  SG  +D +      +P +S   C+GSI EC++ E       
Sbjct: 7   LILCVLIGAFFISMAAAGDSGA-YDWV------MPARSGGGCKGSIGECIAEE------- 52

Query: 67  LDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAI 126
              EF +D E NRRILA ++YISYGAL++NSVPCSRRGASYYNC+ G QANPYSRGCSAI
Sbjct: 53  --EEFELDSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAI 110

Query: 127 TRCR 130
           TRCR
Sbjct: 111 TRCR 114

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Prevents root growth and seedling development in heterologous system.

Nicotiana tabacum (taxid: 4097)

>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 73  MDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131
            D +I+RRILA ++YISYGA+RRNSVPCSRRGASYYNC+ G QANPYSRGCS ITRCRR
Sbjct: 61  FDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 55/73 (75%), Gaps = 5/73 (6%)

Query: 60  GDDGDQELDLEFAMDGEINRRILAMRR-YISYGALRRNSVPCSRRGASYYNCRAGGQANP 118
           G+DG+    L++ MD E NRR LA RR YISYGALR+N+VPCSRRG SYY+C+   +ANP
Sbjct: 39  GEDGE----LDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANP 94

Query: 119 YSRGCSAITRCRR 131
           Y RGCS IT C R
Sbjct: 95  YRRGCSVITHCYR 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 56/78 (71%), Gaps = 2/78 (2%)

Query: 55  CMSVEGDDGDQELDLEFAMDGEINRRILAM-RRYISYGALRRNSVPCSRRGASYYNCRAG 113
           C++ +G  G+ + +LE  MD E NRR LA  RRYI Y AL++N+VPCSRRG SYY+C+  
Sbjct: 31  CINGQGCIGEDD-ELESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKR 89

Query: 114 GQANPYSRGCSAITRCRR 131
            + NPY RGCSAIT C R
Sbjct: 90  RRNNPYRRGCSAITHCYR 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 51/76 (67%), Gaps = 9/76 (11%)

Query: 57  SVEGDDGDQELDLEFAMDGEINRRIL-AMRRYISYGALRRNSVPCSRRGASYYNCRAGGQ 115
           S+ G+D D        M  EI+RR+L A +RYI Y  LRR+ VPC + GASYY+CR+ GQ
Sbjct: 39  SIIGEDED-------LMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRS-GQ 90

Query: 116 ANPYSRGCSAITRCRR 131
           AN YSRGC  ITRC R
Sbjct: 91  ANSYSRGCDTITRCAR 106

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 45/58 (77%), Gaps = 2/58 (3%)

Query: 75  GEINRRILAMRR-YISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131
            EI+RR++ MR+ YISY  LRR+ VPC + GASYY CR+G QAN Y+RGCS ITRC R
Sbjct: 55  SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRCAR 111

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 50/77 (64%), Gaps = 7/77 (9%)

Query: 62  DGDQELDLEFAMDGEINRRILAMRR---YISYGALRRNSVPCS-RRGASYY--NC-RAGG 114
           DG++  ++    DG  +RR L  RR   YISYGAL  N VPC  R G SYY  NC RA G
Sbjct: 53  DGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSANRVPCPPRSGRSYYTHNCFRARG 112

Query: 115 QANPYSRGCSAITRCRR 131
             +PYSRGCS+ITRCRR
Sbjct: 113 PVHPYSRGCSSITRCRR 129

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
154269428	126	rapid alkalinization factor precursor [L	0.961	1.0	0.709	4e-46
356521855	118	PREDICTED: uncharacterized protein LOC10	0.900	1.0	0.671	1e-37
356564045	120	PREDICTED: uncharacterized protein LOC10	0.893	0.975	0.651	4e-37
297736875	152	unnamed protein product [Vitis vinifera]	0.854	0.736	0.661	7e-36
147862659	118	hypothetical protein VITISV_037723 [Viti	0.854	0.949	0.661	1e-35
225432308	118	PREDICTED: uncharacterized protein LOC10	0.854	0.949	0.661	1e-35
357478769	139	Rapid alkalinization factor [Medicago tr	0.885	0.834	0.672	4e-35
388490514	126	unknown [Medicago truncatula]	0.893	0.928	0.666	1e-34
255551741	117	RALFL33, putative [Ricinus communis] gi|	0.816	0.914	0.669	7e-34
118489125	112	unknown [Populus trichocarpa x Populus d	0.847	0.991	0.615	4e-33

>gi|154269428|gb|ABS72341.1| rapid alkalinization factor precursor [Litchi chinensis]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 104/131 (79%), Gaps = 5/131 (3%)

Query: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60
           MR S  S   L+++A+ILAVHVA S+SS VDF+  GHQ GF P+K EC GSI EC +V  
Sbjct: 1   MRTSNLSGLVLVISAVILAVHVAVSASSAVDFNA-GHQFGFFPMKPECSGSIGECATV-- 57

Query: 61  DDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYS 120
             GD+ELDLEF MD E NRRILA  +YISYGALRRNSVPCSRRGASYYNC+ G QANPYS
Sbjct: 58  --GDEELDLEFEMDSESNRRILATSQYISYGALRRNSVPCSRRGASYYNCQTGAQANPYS 115

Query: 121 RGCSAITRCRR 131
           RGCSAITRCRR
Sbjct: 116 RGCSAITRCRR 126

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521855|ref|XP_003529566.1| PREDICTED: uncharacterized protein LOC100780330 [Glycine max]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 96/131 (73%), Gaps = 13/131 (9%)

Query: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60
           M +S F AF LL A  ILAVHVA SSSS +D D       F+P+KS CRGS+AEC  + G
Sbjct: 1   MGSSTFCAFFLLCA--ILAVHVAQSSSSTLDLDAF-----FLPLKSGCRGSVAECSLLAG 53

Query: 61  DDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYS 120
           DD       EF M+ E NRRILA R YISYGALRRN+VPCSRRGASYYNCR G QANPYS
Sbjct: 54  DDA------EFLMESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYS 107

Query: 121 RGCSAITRCRR 131
           RGCSAITRCRR
Sbjct: 108 RGCSAITRCRR 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564045|ref|XP_003550267.1| PREDICTED: uncharacterized protein LOC100775931 [Glycine max]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/129 (65%), Positives = 94/129 (72%), Gaps = 12/129 (9%)

Query: 3   ASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDD 62
           ++ F AF   L   IL+VHVA SSSS +D D       F+P+KS CRGS+AEC  + GDD
Sbjct: 4   STTFCAF--FLVCTILSVHVAQSSSSTLDLDTF-----FLPLKSGCRGSVAECSLLAGDD 56

Query: 63  GDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRG 122
                D EF M+ E NRRILA R YISYGALRRN+VPCSRRGASYYNCR G QANPYSRG
Sbjct: 57  -----DTEFLMESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRG 111

Query: 123 CSAITRCRR 131
           CSAITRCRR
Sbjct: 112 CSAITRCRR 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736875|emb|CBI26076.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 96/127 (75%), Gaps = 15/127 (11%)

Query: 7   SAFSLLLAAIILAVHVASSSSSGVDFDG--LGHQLGFIPVKSECRGSIAECMSVEGDDGD 64
           SAF L+ A  I+AVH+  +SS+ VDF G  L  QLG+IP +S C+GSIAEC++ E     
Sbjct: 39  SAFVLICA--IMAVHMVLTSSA-VDFSGDHLQFQLGWIPARSACQGSIAECLAGE----- 90

Query: 65  QELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCS 124
                EF MD EINRRILA +RYISYGAL RNSVPCSRRGASYYNCR G QANPY+RGCS
Sbjct: 91  -----EFEMDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCS 145

Query: 125 AITRCRR 131
           AITRCRR
Sbjct: 146 AITRCRR 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862659|emb|CAN83593.1| hypothetical protein VITISV_037723 [Vitis vinifera]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 96/127 (75%), Gaps = 15/127 (11%)

Query: 7   SAFSLLLAAIILAVHVASSSSSGVDFDG--LGHQLGFIPVKSECRGSIAECMSVEGDDGD 64
           SAF L+ A  I+AVH+  +SS+ VDF G  L  QLG+IP +S C+GSIAEC++ E     
Sbjct: 5   SAFVLICA--IMAVHMVLTSSA-VDFSGDHLQFQLGWIPARSACQGSIAECLAGE----- 56

Query: 65  QELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCS 124
                EF MD EINRRILA +RYISYGAL RNSVPCSRRGASYYNCR G QANPY+RGCS
Sbjct: 57  -----EFEMDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCS 111

Query: 125 AITRCRR 131
           AITRCRR
Sbjct: 112 AITRCRR 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432308|ref|XP_002273386.1| PREDICTED: uncharacterized protein LOC100261311 [Vitis vinifera]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 96/127 (75%), Gaps = 15/127 (11%)

Query: 7   SAFSLLLAAIILAVHVASSSSSGVDFDG--LGHQLGFIPVKSECRGSIAECMSVEGDDGD 64
           SAF L+ A  I+AVH+  +SS+ VDF G  L  QLG+IP +S C+GSIAEC++ E     
Sbjct: 5   SAFVLICA--IMAVHMVLTSSA-VDFSGDHLQFQLGWIPARSACQGSIAECLAGE----- 56

Query: 65  QELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCS 124
                EF MD EINRRILA +RYISYGAL RNSVPCSRRGASYYNCR G QANPY+RGCS
Sbjct: 57  -----EFEMDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCS 111

Query: 125 AITRCRR 131
           AITRCRR
Sbjct: 112 AITRCRR 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478769|ref|XP_003609670.1| Rapid alkalinization factor [Medicago truncatula] gi|355510725|gb|AES91867.1| Rapid alkalinization factor [Medicago truncatula]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 89/122 (72%), Gaps = 6/122 (4%)

Query: 9   FSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELD 68
           F LL +  ILA+HVA SSSS +DF        F+P  S CRGSIAEC  + GD+ D E  
Sbjct: 10  FFLLFS--ILALHVALSSSSTLDFTDNQLSSFFLPSDSGCRGSIAECSLLAGDEDDSE-- 65

Query: 69  LEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITR 128
             F MD E NRRILA RRYISYGALRRN+VPCSRRGASYYNCR G QANPY RGCSAITR
Sbjct: 66  --FMMDSESNRRILAARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITR 123

Query: 129 CR 130
           CR
Sbjct: 124 CR 125

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490514|gb|AFK33323.1| unknown [Medicago truncatula]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 89/123 (72%), Gaps = 6/123 (4%)

Query: 9   FSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELD 68
           F LL +  ILA+HVA SSSS +DF        F+P  S CRGSIA C  + GD+ D E  
Sbjct: 10  FFLLFS--ILALHVALSSSSTLDFTDNQLSSFFLPSDSGCRGSIAGCSLLAGDEDDSE-- 65

Query: 69  LEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITR 128
             F MD E NRRILA RRYISYGALRRN+VPCSRRGASYYNCR G QANPY RGCSAITR
Sbjct: 66  --FMMDSESNRRILAARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITR 123

Query: 129 CRR 131
           CRR
Sbjct: 124 CRR 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551741|ref|XP_002516916.1| RALFL33, putative [Ricinus communis] gi|223544004|gb|EEF45530.1| RALFL33, putative [Ricinus communis]

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 92/121 (76%), Gaps = 14/121 (11%)

Query: 11  LLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSE-CRGSIAECMSVEGDDGDQELDL 69
           LLL + ILAVHVA SSS+    D       F+P++S  CRGSIAEC+ + G+D     DL
Sbjct: 9   LLLISAILAVHVAVSSSTKSPVD-------FLPMESGGCRGSIAECL-MSGED-----DL 55

Query: 70  EFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRC 129
           EFAMD EINRRILA  +YISYGALRRN+VPCSRRGASYYNCR G QANPYSRGC+ ITRC
Sbjct: 56  EFAMDTEINRRILATNKYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCNRITRC 115

Query: 130 R 130
           R
Sbjct: 116 R 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489125|gb|ABK96369.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 19/130 (14%)

Query: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60
           M  SKF  F  LL +++LAV V+ SSS+ VDF  L          SECRGSIAEC+    
Sbjct: 1   MTTSKFYIF--LLLSVVLAVRVSLSSSTAVDFLPLESS-------SECRGSIAECL---- 47

Query: 61  DDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYS 120
                 +D EF MD E NRRILA  RY+SYGALRRN+VPCSRRGASYYNCR G QANPYS
Sbjct: 48  ------MDEEFGMDTESNRRILATSRYVSYGALRRNTVPCSRRGASYYNCRPGAQANPYS 101

Query: 121 RGCSAITRCR 130
           RGCS ITRCR
Sbjct: 102 RGCSRITRCR 111

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2130724	116	RALFL33 "ralf-like 33" [Arabid	0.641	0.724	0.681	2.7e-29
TAIR|locus:2089323	138	RALF23 "rapid alkalinization f	0.687	0.652	0.666	7.1e-29
UNIPROTKB|Q945T0	115	RALF "Rapid alkalinization fac	0.610	0.695	0.615	9.7e-25
TAIR|locus:2079787	119	RALFL22 "ralf-like 22" [Arabid	0.702	0.773	0.582	1.2e-24
TAIR|locus:2024730	120	RALF1 "rapid alkalinization fa	0.572	0.625	0.635	7.8e-23
TAIR|locus:504955964	110	RALFL19 "ralf-like 19" [Arabid	0.465	0.554	0.677	2.8e-18
TAIR|locus:2032195	110	RALFL4 "ralf-like 4" [Arabidop	0.450	0.536	0.65	2.3e-16
TAIR|locus:505006366	118	RALFL24 "ralf-like 24" [Arabid	0.442	0.491	0.633	1.3e-15
TAIR|locus:2129261	113	RALFL31 "ralf-like 31" [Arabid	0.442	0.513	0.633	2e-15
TAIR|locus:2155553	129	RALFL34 "ralf-like 34" [Arabid	0.442	0.449	0.630	1.6e-13

TAIR|locus:2130724 RALFL33 "ralf-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 62/91 (68%), Positives = 69/91 (75%)

Query:    41 FIPVKSECRGSIAECMSVXXXXXXXXXXXXFAMDGEINRRILAMRRYISYGALRRNSVPC 100
             F+P++S+C G+IAEC               F MD EINRRILA  +YISYGALRRN+VPC
Sbjct:    33 FVPIESKCNGTIAEC-------SLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPC 85

Query:   101 SRRGASYYNCRAGGQANPYSRGCSAITRCRR 131
             SRRGASYYNCR G QANPYSRGCSAITRCRR
Sbjct:    86 SRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2089323 RALF23 "rapid alkalinization factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 66/99 (66%), Positives = 71/99 (71%)

Query:    41 FIPVKSECRGSIAECMSVXXXXXXXXXXXX--------FAMDGEINRRILAMRRYISYGA 92
             F P ++ECRG+IAEC SV                    F MD EINRRILA RRYISYGA
Sbjct:    40 FPPFETECRGTIAEC-SVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGA 98

Query:    93 LRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131
             LRRN++PCSRRGASYYNCR G QANPYSRGCSAITRCRR
Sbjct:    99 LRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

UNIPROTKB|Q945T0 RALF "Rapid alkalinization factor" [Nicotiana tabacum (taxid:4097)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 56/91 (61%), Positives = 67/91 (73%)

Query:    42 IPVKSE--CRGSIAECMSVXXXXXXXXXXXXFAMDGEINRRILAMRRYISYGALRRNSVP 99
             +P +S   C+GSI EC++             F +D E NRRILA ++YISYGAL++NSVP
Sbjct:    33 MPARSGGGCKGSIGECIA---------EEEEFELDSESNRRILATKKYISYGALQKNSVP 83

Query:   100 CSRRGASYYNCRAGGQANPYSRGCSAITRCR 130
             CSRRGASYYNC+ G QANPYSRGCSAITRCR
Sbjct:    84 CSRRGASYYNCKPGAQANPYSRGCSAITRCR 114

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005179 "hormone activity" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2079787 RALFL22 "ralf-like 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 60/103 (58%), Positives = 70/103 (67%)

Query:    31 DF-DGLGH-QLGFIPVKSECRGSIAECMSVXXXXXXXXXXXXFAMDGEINRRILAMRRYI 88
             DF D L   + G   + S C GSIAEC++                D +I+RRILA ++YI
Sbjct:    26 DFGDSLDFVRAGSSSLFSGCTGSIAECIA---------EEEEMEFDSDISRRILAQKKYI 76

Query:    89 SYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131
             SYGA+RRNSVPCSRRGASYYNC+ G QANPYSRGCS ITRCRR
Sbjct:    77 SYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2024730 RALF1 "rapid alkalinization factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 54/85 (63%), Positives = 59/85 (69%)

Query:    46 SECRGSIAECMSVXXXXXXXXXXXXFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGA 105
             S C GSIAEC+                MD EINRRILA  +YISY +L+RNSVPCSRRGA
Sbjct:    45 SGCHGSIAECIGAEEEE----------MDSEINRRILATTKYISYQSLKRNSVPCSRRGA 94

Query:   106 SYYNCRAGGQANPYSRGCSAITRCR 130
             SYYNC+ G QANPYSRGCS I RCR
Sbjct:    95 SYYNCQNGAQANPYSRGCSKIARCR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:504955964 RALFL19 "ralf-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 42/62 (67%), Positives = 48/62 (77%)

Query:    71 FAMDGEINRRILAMRR-YISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRC 129
             + MD E NRR LA RR YISYGALR+N+VPCSRRG SYY+C+   +ANPY RGCS IT C
Sbjct:    46 YLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105

Query:   130 RR 131
              R
Sbjct:   106 YR 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2032195 RALFL4 "ralf-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/60 (65%), Positives = 45/60 (75%)

Query:    73 MDGEINRRILAM-RRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131
             MD E NRR LA  RRYI Y AL++N+VPCSRRG SYY+C+   + NPY RGCSAIT C R
Sbjct:    48 MDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYR 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:505006366 RALFL24 "ralf-like 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query:    73 MDGEINRRILAMRR-YISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131
             M  EI+RR++ MR+ YISY  LRR+ VPC + GASYY CR+G QAN Y+RGCS ITRC R
Sbjct:    53 MPSEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRCAR 111

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2129261 RALFL31 "ralf-like 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 38/60 (63%), Positives = 45/60 (75%)

Query:    73 MDGEINRRIL-AMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131
             M  EI+RR+L A +RYI Y  LRR+ VPC + GASYY+CR+G QAN YSRGC  ITRC R
Sbjct:    48 MPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRCAR 106

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2155553 RALFL34 "ralf-like 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 41/65 (63%), Positives = 44/65 (67%)

Query:    74 DGEINRRILAMRR---YISYGALRRNSVPCS-RRGASYY--NC-RAGGQANPYSRGCSAI 126
             DG  +RR L  RR   YISYGAL  N VPC  R G SYY  NC RA G  +PYSRGCS+I
Sbjct:    65 DGVTDRRSLYWRRTKYYISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSI 124

Query:   127 TRCRR 131
             TRCRR
Sbjct:   125 TRCRR 129

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0006949 "syncytium formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9P8	RLF33_ARATH	No assigned EC number	0.5481	0.8549	0.9655	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
PLN03221	137	PLN03221, PLN03221, rapid alkalinization factor 23	2e-42
PLN03222	119	PLN03222, PLN03222, rapid alkalinization factor 23	3e-39
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	4e-32

>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional

 Score =  135 bits (342), Expect = 2e-42
 Identities = 82/133 (61%), Positives = 94/133 (70%), Gaps = 14/133 (10%)

Query: 8   AFSLLLAAIILAVHVASS--SSSGVDFDGLGHQLGFIPVKSECRGSIAECM--SVEGDDG 63
           A ++    +ILAVH  S   SS  ++F G      F P ++ECRG+IAEC   +  GDDG
Sbjct: 10  AAAIFAILLILAVHFWSVAVSSQSIEFAG-----DFPPFETECRGTIAECSVSAALGDDG 64

Query: 64  D-----QELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANP 118
           D      E+  EF MD EINRRILA RRYISYGALRRN++PCSRRGASYYNCR G QANP
Sbjct: 65  DLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANP 124

Query: 119 YSRGCSAITRCRR 131
           YSRGCSAITRCRR
Sbjct: 125 YSRGCSAITRCRR 137

Length = 137

>gnl|CDD|178761 PLN03222, PLN03222, rapid alkalinization factor 23-like protein; Provisional

 Score =  127 bits (321), Expect = 3e-39
 Identities = 70/131 (53%), Positives = 86/131 (65%), Gaps = 12/131 (9%)

Query: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60
           MR       ++++A + +    A+ +S    F G      F+P+ S+C G+IAEC     
Sbjct: 1   MRGLSTKPGAIIIAILTVHFLFAAVTSQSTGFSG-----DFMPIDSKCNGTIAECSLSTA 55

Query: 61  DDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYS 120
           ++       EF MD EINRRILA  +YISYGALRRN+VPCSRRGASYYNCR G QANPYS
Sbjct: 56  EE-------EFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYS 108

Query: 121 RGCSAITRCRR 131
           RGCSAITRCRR
Sbjct: 109 RGCSAITRCRR 119

Length = 119

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score =  107 bits (270), Expect = 4e-32
 Identities = 49/62 (79%), Positives = 51/62 (82%)

Query: 70  EFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRC 129
              MD    RR+LA RRYISYGALRRNSVPCSRRGASYYNC+ G  ANPYSRGCSAITRC
Sbjct: 5   LVVMDSPAGRRVLAARRYISYGALRRNSVPCSRRGASYYNCKPGAPANPYSRGCSAITRC 64

Query: 130 RR 131
           RR
Sbjct: 65  RR 66

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
PLN03221	137	rapid alkalinization factor 23; Provisional	100.0
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	100.0
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.95
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	86.14

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=100.00  E-value=3.5e-40  Score=250.39  Aligned_cols=113  Identities=67%  Similarity=1.115  Sum_probs=91.3

Q ss_pred             HHHHHHHHhcCCcccccCCCcccccccccCCCcccchhhhhcccC--CCCc---cccc--hhhccccchhhhhhhhcccc
Q 032876           16 IILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG--DDGD---QELD--LEFAMDGEINRRILAMRRYI   88 (131)
Q Consensus        16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~Gsv~EC~~~~~--~~~~---~~~e--eE~~m~se~~RR~L~~~~yI   88 (131)
                      +||+||.-....+   ....+++++|.++...|+||++||++..+  +|+|   +++|  +|++||||++||+|++++||
T Consensus        18 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~rYI   94 (137)
T PLN03221         18 LILAVHFWSVAVS---SQSIEFAGDFPPFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYI   94 (137)
T ss_pred             HHHHHHHHhheee---cccccccccccCCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcCCcc
Confidence            3667765433222   12223345688888889999999986543  5666   3333  59999999999999999999


Q ss_pred             CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 032876           89 SYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR  131 (131)
Q Consensus        89 sYgAL~~d~vPC~~rG~sY~nC~p~~~aNpYsRGCs~itRCrr  131 (131)
                      ||+||++|++||+++|+|||||++++|+|||+|||++||||||
T Consensus        95 SYgALrrd~vPCsrrG~SYynC~~~~pANPY~RGCs~ITRCrR  137 (137)
T PLN03221         95 SYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR  137 (137)
T ss_pred             CHHHhccCCCCCCCCCCCccccCCCCCCCCCCCCcccccccCC
Confidence            9999999999999999999999998999999999999999997

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=100.00  E-value=2.9e-40  Score=246.19  Aligned_cols=105  Identities=65%  Similarity=1.124  Sum_probs=86.8

Q ss_pred             HHHHHHHhcCCcccccCCCcccccccccCCCcccchhhhhcccCCCCccccchhhccccchhhhhhhhccccCcccccCC
Q 032876           17 ILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRYISYGALRRN   96 (131)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~Gsv~EC~~~~~~~~~~~~eeE~~m~se~~RR~L~~~~yIsYgAL~~d   96 (131)
                      ||-||.++... +.+..|+..  +|.++...|+|+++||++.       ++|+||+||||++||+|++++||||+||++|
T Consensus        15 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~C~Gsi~EC~~~-------~~e~e~~mdSe~sRR~L~~~rYISYgALrrd   84 (119)
T PLN03222         15 ILTVHFLFAAV-TSQSTGFSG--DFMPIDSKCNGTIAECSLS-------TAEEEFEMDSEINRRILATTKYISYGALRRN   84 (119)
T ss_pred             hhHHHHHHHHh-hcccccccc--cccCCCCcCCCCHHHhhcc-------cccchhccccHHHHHHHhhcCeecHHHhcCC
Confidence            44555544422 122234333  7788777899999999963       2356999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 032876           97 SVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR  131 (131)
Q Consensus        97 ~vPC~~rG~sY~nC~p~~~aNpYsRGCs~itRCrr  131 (131)
                      ++||++||+|||||++++|+|||+|||++||||||
T Consensus        85 ~vPCsrrG~SYynC~~~~~ANPY~RGCs~ITrCrR  119 (119)
T PLN03222         85 TVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR  119 (119)
T ss_pred             CCCCCCCCCCccccCCCCCCCCCCCCchhhccccC
Confidence            99999999999999998999999999999999997

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.95  E-value=5.5e-29  Score=169.14  Aligned_cols=65  Identities=69%  Similarity=1.187  Sum_probs=62.0

Q ss_pred             cchhhccccchhhhhhhhccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 032876           67 LDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR  131 (131)
Q Consensus        67 ~eeE~~m~se~~RR~L~~~~yIsYgAL~~d~vPC~~rG~sY~nC~p~~~aNpYsRGCs~itRCrr  131 (131)
                      +|+|+.|+||++||+|++++||||+||++|++||.++|.+|++|.+++|+|||+|||++||||||
T Consensus         2 ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr   66 (66)
T PF05498_consen    2 EEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR   66 (66)
T ss_pred             hhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence            36789999999999999999999999999999999999999999888999999999999999997

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=86.14  E-value=0.8  Score=33.05  Aligned_cols=20  Identities=35%  Similarity=0.255  Sum_probs=9.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHH
Q 032876            1 MRASKFSAFSLLLAAIILAVH   21 (131)
Q Consensus         1 m~~~~~~~~~~~~~~~~l~~~   21 (131)
                      |. +|...|+.+++|++|||+
T Consensus         1 Ma-SK~~llL~l~LA~lLlis   20 (95)
T PF07172_consen    1 MA-SKAFLLLGLLLAALLLIS   20 (95)
T ss_pred             Cc-hhHHHHHHHHHHHHHHHH
Confidence            66 444344444444455554

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00