Citrus Sinensis ID: 032878

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYSA
cccccccccEEEcccEEEEEcccccEEEEEEEEEcccccEEEEEEEEccccEEEEEcccEEEccccEEEEEEEEEcccccccccccccEEEEEEEEccccccccccccccccccccccEEEEEEEEEEEEc
ccccccccEEEEcccHccccccccEEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEcccccccccccccccEEEEEEEEcccccHHHccHHHHcccccccEEccEEEEEEEcc
mtadggnqlisvhPEELKFIFELEKqgfcdlkvinntEHHVAFKvkttspkkyfvrpntgvvqpwdsCIIRVTlqaqresppdmqckdkfllqstivpsntdvddlppdtfnkdsgktieecKLRVVLYSA
mtadggnqlisvHPEELKFIFELEKQGFCDLKVINNTEHHVafkvkttspkkyfvrpntgvvqpwdSCIIRVTLQAQRESPPDMQCKDKFLLQSTIvpsntdvddlppdtfnkdsgktieecklrvvlysa
MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYSA
*********ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQ**************FLLQSTI************************ECKLRVVL***
******N****VHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYSA
MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYSA
******NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYSA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query131 2.2.26 [Sep-21-2011]
Q9LVU1220 Vesicle-associated protei yes no 0.961 0.572 0.817 3e-58
Q84WW5 239 Vesicle-associated protei no no 0.938 0.514 0.556 4e-34
Q8VZ95 256 Vesicle-associated protei no no 0.916 0.468 0.541 2e-32
Q9SHC8 239 Vesicle-associated protei no no 0.931 0.510 0.524 5e-31
B9DHD7 386 Vesicle-associated protei no no 0.916 0.310 0.541 2e-30
Q9SYC9 571 Vesicle-associated protei no no 0.931 0.213 0.442 6e-26
O82213149 Vesicle-associated protei no no 0.931 0.818 0.442 2e-25
O60119 383 Vesicle-associated membra yes no 0.511 0.174 0.485 1e-11
Q10484 319 Uncharacterized protein C no no 0.748 0.307 0.39 4e-11
A5GFS8 243 Vesicle-associated membra yes no 0.709 0.382 0.389 2e-10
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function desciption
 Score =  223 bits (568), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 114/126 (90%)

Query: 1   MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
           MT  G NQLIS+ P+ELKF+FELEKQ +CDLKV N TE++VAFKVKTTSPKKYFVRPNTG
Sbjct: 1   MTGVGENQLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTG 60

Query: 61  VVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIE 120
           V+QPWDSCIIRVTLQAQRE PPDMQCKDKFLLQSTIVP +TDVD+LP DTF KDSGKT+ 
Sbjct: 61  VIQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLT 120

Query: 121 ECKLRV 126
           ECKL+V
Sbjct: 121 ECKLKV 126
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2 Back     alignment and function description
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query131
255581982220 vesicle-associated membrane protein, put 0.992 0.590 0.878 9e-63
449459000216 PREDICTED: vesicle-associated protein 2- 0.992 0.601 0.838 6e-59
449458998220 PREDICTED: vesicle-associated protein 2- 0.992 0.590 0.838 1e-58
297790937220 vesicle-associated membrane family prote 0.992 0.590 0.807 2e-57
224071229222 predicted protein [Populus trichocarpa] 0.969 0.572 0.851 9e-57
15238034220 VAMP (vesicle-associated membrane protei 0.961 0.572 0.817 2e-56
356563376222 PREDICTED: vesicle-associated protein 2- 0.992 0.585 0.792 2e-54
356541222217 PREDICTED: vesicle-associated protein 2- 0.954 0.576 0.808 4e-54
388507074220 unknown [Lotus japonicus] 0.908 0.540 0.857 4e-54
351728050213 uncharacterized protein LOC100305949 [Gl 0.954 0.586 0.8 4e-54
>gi|255581982|ref|XP_002531789.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223528582|gb|EEF30603.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  244 bits (623), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 116/132 (87%), Positives = 126/132 (95%), Gaps = 2/132 (1%)

Query: 1   MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
           MTA GGNQLISVHP+ELKFIFELEKQ FCDLKV+NNTEHHVAFKVKTTSPKKYFVRPNTG
Sbjct: 1   MTAGGGNQLISVHPDELKFIFELEKQSFCDLKVVNNTEHHVAFKVKTTSPKKYFVRPNTG 60

Query: 61  VVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKD-SGKTI 119
           V+QPWDSCIIRVTLQAQ+E+PPDMQCKDKFLLQSTIVP++TDVD+LPPDTF KD +GKT+
Sbjct: 61  VIQPWDSCIIRVTLQAQQEAPPDMQCKDKFLLQSTIVPAHTDVDELPPDTFTKDGTGKTV 120

Query: 120 EECKLRVVLYSA 131
           EECKLR VLY A
Sbjct: 121 EECKLR-VLYVA 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449459000|ref|XP_004147234.1| PREDICTED: vesicle-associated protein 2-1-like isoform 2 [Cucumis sativus] gi|449523728|ref|XP_004168875.1| PREDICTED: vesicle-associated protein 2-1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449458998|ref|XP_004147233.1| PREDICTED: vesicle-associated protein 2-1-like isoform 1 [Cucumis sativus] gi|449523726|ref|XP_004168874.1| PREDICTED: vesicle-associated protein 2-1-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297790937|ref|XP_002863353.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297309188|gb|EFH39612.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224071229|ref|XP_002303378.1| predicted protein [Populus trichocarpa] gi|222840810|gb|EEE78357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15238034|ref|NP_199529.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|30695123|ref|NP_851144.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|75180692|sp|Q9LVU1.1|VAP21_ARATH RecName: Full=Vesicle-associated protein 2-1; AltName: Full=Plant VAP homolog 21; Short=AtPVA21; AltName: Full=VAMP-associated protein 2-1 gi|8809600|dbj|BAA97151.1| VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana] gi|14334974|gb|AAK59664.1| putative VAMP (vesicle-associated membrane protein)-associated protein [Arabidopsis thaliana] gi|17104633|gb|AAL34205.1| putative VAMP-associated protein [Arabidopsis thaliana] gi|21553413|gb|AAM62506.1| VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana] gi|332008097|gb|AED95480.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|332008098|gb|AED95481.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356563376|ref|XP_003549940.1| PREDICTED: vesicle-associated protein 2-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356541222|ref|XP_003539079.1| PREDICTED: vesicle-associated protein 2-1-like [Glycine max] Back     alignment and taxonomy information
>gi|388507074|gb|AFK41603.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351728050|ref|NP_001235390.1| uncharacterized protein LOC100305949 [Glycine max] gi|255627077|gb|ACU13883.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query131
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.961 0.572 0.817 5.5e-54
TAIR|locus:2126921 239 AT4G00170 [Arabidopsis thalian 0.938 0.514 0.556 6.7e-33
TAIR|locus:2101766 256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.916 0.468 0.541 2.6e-31
TAIR|locus:2055557 239 PVA12 "plant VAP homolog 12" [ 0.923 0.506 0.528 3.8e-30
TAIR|locus:2025585 386 VAP27-2 "vamp/synaptobrevin-as 0.916 0.310 0.541 1e-29
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.916 0.805 0.45 7.6e-25
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.923 0.189 0.446 7.8e-25
UNIPROTKB|G4N022 285 MGG_06183 "Uncharacterized pro 0.923 0.424 0.357 1.3e-15
UNIPROTKB|Q5U511 243 vapb "LOC495400 protein" [Xeno 0.709 0.382 0.421 2.1e-13
POMBASE|SPBC16G5.05c 383 SPBC16G5.05c "VAP family prote 0.755 0.258 0.403 5.5e-13
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 103/126 (81%), Positives = 114/126 (90%)

Query:     1 MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
             MT  G NQLIS+ P+ELKF+FELEKQ +CDLKV N TE++VAFKVKTTSPKKYFVRPNTG
Sbjct:     1 MTGVGENQLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTG 60

Query:    61 VVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIE 120
             V+QPWDSCIIRVTLQAQRE PPDMQCKDKFLLQSTIVP +TDVD+LP DTF KDSGKT+ 
Sbjct:    61 VIQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLT 120

Query:   121 ECKLRV 126
             ECKL+V
Sbjct:   121 ECKLKV 126
GO:0005198 "structural molecule activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U511 vapb "LOC495400 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LVU1VAP21_ARATHNo assigned EC number0.81740.96180.5727yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query131
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 5e-30
COG5066 242 COG5066, SCS2, VAMP-associated protein involved in 7e-17
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  103 bits (260), Expect = 5e-30
 Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 9   LISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDS 67
           L+++ P + L F    +KQG   L + N ++  VAFKVKTT+PK+Y VRPN G+++P +S
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 68  CIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDS 115
             I +T Q   + P D + KDKF++Q T  P +            K+ 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNG 107

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 131
COG5066 242 SCS2 VAMP-associated protein involved in inositol 99.94
KOG0439218 consensus VAMP-associated protein involved in inos 99.94
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.93
PF14874102 PapD-like: Flagellar-associated PapD-like 98.93
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 97.82
PRK09918230 putative fimbrial chaperone protein; Provisional 96.44
PF14646426 MYCBPAP: MYCBP-associated protein family 96.41
PRK09926246 putative chaperone protein EcpD; Provisional 96.18
PRK15249253 fimbrial chaperone protein StbB; Provisional 96.16
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 95.91
PRK15299227 fimbrial chaperone protein StiB; Provisional 95.76
PRK15246233 fimbrial assembly chaperone StbE; Provisional 95.65
PRK15295226 fimbrial assembly chaperone SthB; Provisional 95.59
PRK15211229 fimbrial chaperone protein PefD; Provisional 95.29
PRK11385236 putativi pili assembly chaperone; Provisional 95.29
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 94.62
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 94.54
PRK15192234 fimbrial chaperone BcfG; Provisional 94.49
PRK15290243 lfpB fimbrial chaperone protein; Provisional 93.99
PRK15188228 fimbrial chaperone protein BcfB; Provisional 93.95
COG3121235 FimC P pilus assembly protein, chaperone PapD [Cel 93.91
PRK15254239 fimbrial chaperone protein StdC; Provisional 93.58
PRK15195229 fimbrial chaperone protein FimC; Provisional 93.3
PRK15218226 fimbrial chaperone protein PegB; Provisional 92.81
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 92.21
PRK15224237 pili assembly chaperone protein SafB; Provisional 92.1
PRK15233246 putative fimbrial chaperone protein SefB; Provisio 91.63
PF06030121 DUF916: Bacterial protein of unknown function (DUF 90.69
PRK15274 257 putative periplasmic fimbrial chaperone protein St 90.48
PRK15253242 putative fimbrial assembly chaperone protein StcB; 90.03
PF03173164 CHB_HEX: Putative carbohydrate binding domain; Int 90.01
PF00927107 Transglut_C: Transglutaminase family, C-terminal i 88.16
PRK15308234 putative fimbrial protein TcfA; Provisional 88.15
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 87.33
PF0550689 DUF756: Domain of unknown function (DUF756); Inter 86.26
PRK15285250 putative fimbrial chaperone protein StfD; Provisio 85.63
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 85.15
PF04744381 Monooxygenase_B: Monooxygenase subunit B protein; 83.29
PF05753181 TRAP_beta: Translocon-associated protein beta (TRA 83.23
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=99.94  E-value=4.2e-27  Score=173.90  Aligned_cols=118  Identities=37%  Similarity=0.597  Sum_probs=105.0

Q ss_pred             EEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCC-CCCCCCC
Q 032878           10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP-PDMQCKD   88 (131)
Q Consensus        10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~-~~~~~~d   88 (131)
                      |+++|.. .|..|+....++.+.|.|++..+|+||||||+|..|+|||+.|.|+|++++.|.|+|+++.+.| ++.+|+|
T Consensus         3 veisp~~-~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd   81 (242)
T COG5066           3 VEISPQT-TFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD   81 (242)
T ss_pred             eEecCce-EEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence            6777765 4777888888999999999999999999999999999999999999999999999999998877 7899999


Q ss_pred             EEEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEEEe
Q 032878           89 KFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLY  129 (131)
Q Consensus        89 kF~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~~~  129 (131)
                      |||||+...+......++ .++|....+..|.++||||.|.
T Consensus        82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvys  121 (242)
T COG5066          82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYS  121 (242)
T ss_pred             eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEee
Confidence            999999999876554555 4788888777899999999985

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15254 fimbrial chaperone protein StdC; Provisional Back     alignment and domain information
>PRK15195 fimbrial chaperone protein FimC; Provisional Back     alignment and domain information
>PRK15218 fimbrial chaperone protein PegB; Provisional Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK15224 pili assembly chaperone protein SafB; Provisional Back     alignment and domain information
>PRK15233 putative fimbrial chaperone protein SefB; Provisional Back     alignment and domain information
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function Back     alignment and domain information
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional Back     alignment and domain information
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional Back     alignment and domain information
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3 Back     alignment and domain information
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds Back     alignment and domain information
>PRK15308 putative fimbrial protein TcfA; Provisional Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins Back     alignment and domain information
>PRK15285 putative fimbrial chaperone protein StfD; Provisional Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related [] Back     alignment and domain information
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query131
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 2e-11
2rr3_A130 Solution Structure Of The Complex Between Human Vap 5e-11
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 3e-10
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 4e-10
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 1e-09
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 4e-04
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 8   QLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWD 66
           Q++S+ P+ ELKF          +LK+ N T+ +V FKVKTT+P++Y VRPN+G++    
Sbjct: 8   QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 67
Query: 67  SCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNT 101
           S  + V LQ   +  P+ + K KF++QS   P++T
Sbjct: 68  SINVSVMLQP-FDYDPNEKSKHKFMVQSMFAPTDT 101
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query131
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 4e-35
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 2e-34
1z9l_A128 Vesicle-associated membrane protein-associated pro 3e-32
2cri_A147 Vesicle-associated membrane protein-associated pro 3e-31
1m1s_A116 WR4; structural genomics, major sperm protein, bio 6e-30
1row_A109 SSP-19, MSP-domain protein like family member; bet 2e-21
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  117 bits (295), Expect = 4e-35
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 7   NQLISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPW 65
             L+ + P EEL F      +    + + N T++ VAFKV+TT+P+KY V+P+     P 
Sbjct: 16  GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPG 75

Query: 66  DSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKD-SGKTIEECKL 124
            S  I V+          +  +D+FL+ +  +  ++         F K+     + E +L
Sbjct: 76  ASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRL 131

Query: 125 RVVL 128
           R   
Sbjct: 132 RCHT 135
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query131
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 100.0
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.96
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.96
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.72
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 98.58
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 98.55
3qis_A 366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 98.17
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 97.54
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 97.35
3q48_A 257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 96.53
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 95.8
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 95.63
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 95.19
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 95.12
4ay0_A218 Chaperone protein CAF1M; amino acid motifs, bacter 95.1
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 94.4
3rfr_A419 PMOB; membrane, oxidoreductase; 2.68A {Methylocyst 93.15
1yew_A382 Particulate methane monooxygenase, B subunit; memb 93.07
3gfu_C224 Chaperone protein FAEE; immunoglobulin like fold, 92.14
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 91.37
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
Probab=100.00  E-value=2.1e-36  Score=210.15  Aligned_cols=123  Identities=32%  Similarity=0.539  Sum_probs=109.8

Q ss_pred             CCCCCccEEEcCC-eEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCC
Q 032878            3 ADGGNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP   81 (131)
Q Consensus         3 ~~~~~~~l~v~P~-~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~   81 (131)
                      .+....+|.++|. +|.|.+++++.+++.|+|+|+++++||||||||+|.+|+|+|++|+|+||+++.|.|+++++.. +
T Consensus         4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~   82 (128)
T 1z9l_A            4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-D   82 (128)
T ss_dssp             CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-C
T ss_pred             CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-C
Confidence            3456789999996 9999999999999999999999999999999999999999999999999999999999999743 4


Q ss_pred             CCCCCCCEEEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEEEe
Q 032878           82 PDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLY  129 (131)
Q Consensus        82 ~~~~~~dkF~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~~~  129 (131)
                      ++.+++|||+||++.++++.  .++ .++|++..+..++++||||+|.
T Consensus        83 p~~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~  127 (128)
T 1z9l_A           83 PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE  127 (128)
T ss_dssp             TTCCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred             cccccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence            45578999999999999754  345 5789888888999999999996
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 131
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 1e-34
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 6e-34
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 9e-26
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 1e-25
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (289), Expect = 1e-34
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)

Query: 8   QLISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWD 66
            L+ + P EEL F      +    + + N T++ VAFKV+TT+P+KY V+P+     P  
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 67  SCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKD-SGKTIEECKLR 125
           S  I V+          +  +D+FL+ +  +  ++         F K+     + E +LR
Sbjct: 77  SIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLR 132

Query: 126 VVL 128
              
Sbjct: 133 CHT 135
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query131
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 100.0
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 99.98
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.95
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.94
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 97.08
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 96.95
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 96.33
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 96.24
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 91.97
d1vjja399 Transglutaminase, two C-terminal domains {Human (H 86.01
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 84.53
d2q3za398 Transglutaminase, two C-terminal domains {Human (H 81.56
d1g0da3101 Transglutaminase, two C-terminal domains {Red sea 80.82
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.6e-33  Score=189.95  Aligned_cols=121  Identities=18%  Similarity=0.286  Sum_probs=104.3

Q ss_pred             CCccEEEcCC-eEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCC
Q 032878            6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDM   84 (131)
Q Consensus         6 ~~~~l~v~P~-~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~   84 (131)
                      +...|.++|. +|.|++++++.+.+.|+|+|.++++||||||||+|++|+|+|++|+|+||+++.|.|+|+++.. .++.
T Consensus         3 p~~~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~~~~~~-~~~~   81 (124)
T d1grwa_           3 PPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAF-GQED   81 (124)
T ss_dssp             CCCCEEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECCCCG-GGSC
T ss_pred             CCCceEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEEecCCC-CCcc
Confidence            3457999996 8999999999999999999999999999999999999999999999999999999999999743 3445


Q ss_pred             CCCCEEEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEEEec
Q 032878           85 QCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYS  130 (131)
Q Consensus        85 ~~~dkF~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~~~~  130 (131)
                      .++|||+|+++.++++. .+++.. .|+.. ...+++++|+|.|.|
T Consensus        82 ~~~dkF~v~~~~~p~~~-~~~~~~-~w~~~-~~~~~~~~l~V~Y~p  124 (124)
T d1grwa_          82 TNNDRITVEWTNTPDGA-AKQFRR-EWFQG-DGMVRRKNLPIEYNP  124 (124)
T ss_dssp             CTTCEEEEEEEECCSSC-CSSCCG-GGGTS-SSCCEEEEEEEEEEC
T ss_pred             cCCceEEEEEEECCCcc-HHHHHH-HHhcc-CCceEEEEEEEEeCC
Confidence            78999999999998754 455654 44443 357899999999986
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure