Citrus Sinensis ID: 032901

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDDVPKAGGALGQGPRAGGPAGAPAAARA
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcccccccccccEEEEEEccccHHHHHHHHHHHccccccccccccEEEEEEEEEcEEccEEcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccccccEEEEcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccEEEEEEEEEEEEHHHHHHEEcccHHHHcccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtfkrrnggrnkhgrghvkfircsncgkccpkAIKRFLVRNIVEQAAVRDVQEAcvydgytlpklYAKMQYCVSCAIHSHVVRVrsrtnrrireppqrfrrrddvpkaggalgqgpraggpagapaaara
Flexible Loop (DISEMBL)
mtfkrrnggrnkhgrghvkfircsncgKCCPKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHshvvrvrsrtnrrireppqrfrrrddvpkaggalgqgpraggpagAPAAARA
Low Complexity Region (SEG)
MTFkrrnggrnkhgrghVKFIRCSNCGKCCPKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSHvvrvrsrtnrrireppqrfrrrDDVPKaggalgqgpraggpagapaaara
Disordered region (IsUnstruct)
***************GHVKFIRCSNCGKCCPKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSHVVRVR*********************************************
Disordered Region (DISOPRED)
***K**************KFIRCSNCGKCCPKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSHVVRV**********************************************
Disordered Region (DISEMBL)
*************GRGHVKFIRCSNCGKCCPKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDDVPKAGGALG*****************
Disordered Region (DISPRO)
****************HVKFIRCSNCGKCCPKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSHVVRVRSRT******************************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDDVPKAGGALGQGPRAGGPAGAPAAARA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q9LYK9	130	40S ribosomal protein S26	yes	no	0.823	0.823	0.854	8e-48
P49206	131	40S ribosomal protein S26	yes	no	0.838	0.832	0.839	9e-48
Q8LPJ7	133	40S ribosomal protein S26	no	no	0.838	0.819	0.839	1e-47
P49216	133	40S ribosomal protein S26	no	no	0.646	0.631	0.848	2e-37
Q9UTG4	119	40S ribosomal protein S26	yes	no	0.8	0.873	0.688	6e-36
P13008	114	40S ribosomal protein S26	yes	no	0.753	0.859	0.71	2e-35
O93931	126	40S ribosomal protein S26	N/A	no	0.792	0.817	0.685	1e-34
Q9GT45	115	40S ribosomal protein S26	yes	no	0.753	0.852	0.7	1e-34
O45499	117	40S ribosomal protein S26	yes	no	0.761	0.846	0.693	1e-33
P27085	127	40S ribosomal protein S26	N/A	no	0.769	0.787	0.676	1e-33

>sp|Q9LYK9|RS263_ARATH 40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1

 Score =  188 bits (478), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 94/110 (85%), Positives = 100/110 (90%), Gaps = 3/110 (2%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPK  AIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPK 107
           GYTLPKLYAK QYCVSCAIHSHVVRVRSRTNRR+R PP RF RR++D PK
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPK 110

Arabidopsis thaliana (taxid: 3702)

>sp|P49206|RS261_ARATH 40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2

 Score =  188 bits (477), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 100/112 (89%), Gaps = 3/112 (2%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPK  AIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAG 109
           GYTLPKLYAK QYCVSCAIHSHVVRVRSRTNRR+R PP RF RR++D PK G
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPG 112

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPJ7|RS262_ARATH 40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 100/112 (89%), Gaps = 3/112 (2%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPK  AIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAG 109
           GYTLPKLYAK QYCVSCAIHSHVVRVRSRTNRR+R PP RF RR++D PK G
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPG 112

Arabidopsis thaliana (taxid: 3702)

>sp|P49216|RS26_ORYSJ 40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/86 (84%), Positives = 80/86 (93%), Gaps = 2/86 (2%)

Query: 1  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
          MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPK  AIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1  MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 59 GYTLPKLYAKMQYCVSCAIHSHVVRV 84
          GY LPKLYAK+ +CVSCAIH+H+VRV
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRV 86

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9UTG4|RS26B_SCHPO 40S ribosomal protein S26-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps26b PE=3 SV=1

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 82/106 (77%), Gaps = 2/106 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MT KRRN GRNKHGRGHVKF+RC NC +  PK  AIKR+ +RN+VE AA+RD+ EA VY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDD 104
            YT+PKLY K+QYCVSCAIHS VVRVRSR  RRIR PP R R   D
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRD 106

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P13008|RS26_DROME 40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 81/100 (81%), Gaps = 2/100 (2%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MT KRRNGGRNKH RGHVK +RC+NC +C PK  AIK+F++RNIVE AAVRD+ EA ++D
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQR 98
            Y LPKLYAK+ YCVSCAIHS VVR RSR  RRIR PP R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLR 100

Drosophila melanogaster (taxid: 7227)

>sp|O93931|RS26_SCHCO 40S ribosomal protein S26 OS=Schizophyllum commune GN=RPS26 PE=2 SV=1

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCC--PKAIKRFLVRNIVEQAAVRDVQEACVYD 58
           MT KRRNGGRNK GRGHV F+RCSNC +C    KAIKRF VRN+VE AA+RD+ +A VY 
Sbjct: 1   MTKKRRNGGRNKSGRGHVTFVRCSNCSRCVAKDKAIKRFTVRNMVESAAIRDISDASVYP 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRD 103
            Y +PKLY K+ YCVSCAIHSHVVRVRSR  RR R PP R R +D
Sbjct: 61  EYAIPKLYIKIAYCVSCAIHSHVVRVRSREGRRNRAPPPRVRWKD 105

Schizophyllum commune (taxid: 5334)

>sp|Q9GT45|RS26_ANOGA 40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 80/100 (80%), Gaps = 2/100 (2%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MT KRRNGGR KH RGHVK +RC+NC +C PK  AIK+F++RNIVE AAVRD+ +A VY 
Sbjct: 1   MTKKRRNGGRCKHNRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYS 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQR 98
            Y LPKLYAK+ YCVSCAIHS VVR RS+  RRIR PPQR
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQR 100

Anopheles gambiae (taxid: 7165)

>sp|O45499|RS26_CAEEL 40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=3 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 79/101 (78%), Gaps = 2/101 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPK  AIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF 99
            Y LPKLY K+ YC++CAIHS VVR RSR  RR R PP RF
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF 101

Caenorhabditis elegans (taxid: 6239)

>sp|P27085|RS26_OCTVU 40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%), Gaps = 2/102 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MT KRRN GR K GRGHVK+IRC+NC +C PK  AIK+F++RNIVE AAVRD+ +A VY+
Sbjct: 1   MTSKRRNNGRGKKGRGHVKYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYE 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFR 100
            Y LPKLYAK+ YCVSCAIHS +VR RSR  R+ R PP RFR
Sbjct: 61  VYALPKLYAKLLYCVSCAIHSKIVRNRSREARKDRTPPIRFR 102

Octopus vulgaris (taxid: 6645)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
297736505	150	unnamed protein product [Vitis vinifera]	0.923	0.8	0.859	1e-53
449441254	129	PREDICTED: 40S ribosomal protein S26-1-l	0.969	0.976	0.870	3e-53
351725819	130	uncharacterized protein LOC100305706 [Gl	0.961	0.961	0.852	3e-53
225448661	124	PREDICTED: 40S ribosomal protein S26-2-l	0.923	0.967	0.859	3e-53
357495305	230	40S ribosomal protein [Medicago truncatu	0.961	0.543	0.837	5e-53
351724687	130	uncharacterized protein LOC100499862 [Gl	0.976	0.976	0.834	6e-53
358248998	129	uncharacterized protein LOC100784958 [Gl	0.953	0.961	0.852	6e-52
5706704	130	ribosomal protein S26 [Pisum sativum] gi	0.961	0.961	0.837	9e-52
351727535	129	uncharacterized protein LOC100527516 [Gl	0.969	0.976	0.839	9e-52
388514637	129	unknown [Lotus japonicus]	0.969	0.976	0.839	2e-51

>gi|297736505|emb|CBI25376.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/128 (85%), Positives = 113/128 (88%), Gaps = 8/128 (6%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 27  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 86

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDDVPKAGGALGQGPRA 118
            YTLPKLYAKMQYCVSCAIHSHVVRVRSRT+RR R+PPQRFRRRDD+PK     GQ PR 
Sbjct: 87  TYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFRRRDDMPKP----GQAPRP 142

Query: 119 GGPAGAPA 126
            G  GAP 
Sbjct: 143 AG--GAPV 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441254|ref|XP_004138397.1| PREDICTED: 40S ribosomal protein S26-1-like [Cucumis sativus] gi|449514728|ref|XP_004164463.1| PREDICTED: 40S ribosomal protein S26-1-like [Cucumis sativus]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/131 (87%), Positives = 115/131 (87%), Gaps = 5/131 (3%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAGGALGQGPR 117
            YTLPKLYAKMQYCVSCAIHSHVVRVRSRT+RR REPPQRF RRRDD PK G A GQ PR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQA-GQNPR 119

Query: 118 AGGPAGAPAAA 128
            G   GAP  A
Sbjct: 120 VGA-GGAPPRA 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725819|ref|NP_001235570.1| uncharacterized protein LOC100305706 [Glycine max] gi|255626367|gb|ACU13528.1| unknown [Glycine max]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/129 (85%), Positives = 113/129 (87%), Gaps = 4/129 (3%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAGGALGQGPR 117
            YTLPKLY KMQYCVSCAIHSHVVRVRSRT+RR REPPQRF RRRDD P+ G   GQGPR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQP-GQGPR 119

Query: 118 AGGPAGAPA 126
             G A AP 
Sbjct: 120 PAGTAAAPV 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448661|ref|XP_002279872.1| PREDICTED: 40S ribosomal protein S26-2-like [Vitis vinifera]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/128 (85%), Positives = 113/128 (88%), Gaps = 8/128 (6%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDDVPKAGGALGQGPRA 118
            YTLPKLYAKMQYCVSCAIHSHVVRVRSRT+RR R+PPQRFRRRDD+PK     GQ PR 
Sbjct: 61  TYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFRRRDDMPKP----GQAPRP 116

Query: 119 GGPAGAPA 126
            G  GAP 
Sbjct: 117 AG--GAPV 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495305|ref|XP_003617941.1| 40S ribosomal protein [Medicago truncatula] gi|355519276|gb|AET00900.1| 40S ribosomal protein [Medicago truncatula]

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 111/129 (86%), Gaps = 4/129 (3%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 101 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 160

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAGGALGQGPR 117
            YTLPKLY KMQYCVSCAIHSHVVRVRSRT+RR R+PPQRF RRRDD P+ G   GQ PR
Sbjct: 161 QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQP-GQAPR 219

Query: 118 AGGPAGAPA 126
                GAP 
Sbjct: 220 PAVAGGAPV 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724687|ref|NP_001237066.1| uncharacterized protein LOC100499862 [Glycine max] gi|255627229|gb|ACU13959.1| unknown [Glycine max]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 111/133 (83%), Positives = 114/133 (85%), Gaps = 6/133 (4%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAGGALGQGPR 117
            YTLPKLY KMQYCVSCAIHSHVVRVRSRT+RR REPPQRF RRRDD P+ G   GQGPR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGGQGPR 120

Query: 118 AGGPAGAPAAARA 130
              PAG  A  R 
Sbjct: 121 ---PAGTAAPVRT 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248998|ref|NP_001239976.1| uncharacterized protein LOC100784958 [Glycine max] gi|255627385|gb|ACU14037.1| unknown [Glycine max] gi|255642187|gb|ACU21358.1| unknown [Glycine max]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 110/129 (85%), Positives = 113/129 (87%), Gaps = 5/129 (3%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAGGALGQGPR 117
            YTLPKLY KMQYCVSCAIHSHVVRVRSRT+RR REPPQRF RRRDD P+ G   GQ PR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQP-GQAPR 119

Query: 118 AGGPAGAPA 126
             G  GAPA
Sbjct: 120 PAG-VGAPA 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5706704|gb|AAD47346.1|AF112440_1 ribosomal protein S26 [Pisum sativum] gi|388492776|gb|AFK34454.1| unknown [Medicago truncatula] gi|388494954|gb|AFK35543.1| unknown [Medicago truncatula]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 111/129 (86%), Gaps = 4/129 (3%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAGGALGQGPR 117
            YTLPKLY KMQYCVSCAIHSHVVRVRSRT+RR R+PPQRF RRRDD P+ G   GQ PR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQP-GQAPR 119

Query: 118 AGGPAGAPA 126
                GAP 
Sbjct: 120 PAVAGGAPV 128

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727535|ref|NP_001237164.1| uncharacterized protein LOC100527516 [Glycine max] gi|255632524|gb|ACU16612.1| unknown [Glycine max]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 110/131 (83%), Positives = 114/131 (87%), Gaps = 5/131 (3%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAGGALGQGPR 117
            YT+PKLY KMQYCVSCAIHSHVVRVRSRT+RR REPPQRF RRRDD P+ G   GQ PR
Sbjct: 61  QYTIPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQP-GQAPR 119

Query: 118 AGGPAGAPAAA 128
             G  GAPA A
Sbjct: 120 PAG-VGAPARA 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514637|gb|AFK45380.1| unknown [Lotus japonicus]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/131 (83%), Positives = 113/131 (86%), Gaps = 5/131 (3%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK  AIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRF-RRRDDVPKAGGALGQGPR 117
            YTLPKLY KMQYCVSCAIHSHVVRVRSRT+RR R+PPQRF RRRDD P+ G   GQ PR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQP-GQAPR 119

Query: 118 AGGPAGAPAAA 128
             G  GAP  A
Sbjct: 120 PAG-VGAPPRA 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2078491	130	AT3G56340 [Arabidopsis thalian	0.615	0.615	0.731	4.5e-27
TAIR|locus:2061883	133	AT2G40510 [Arabidopsis thalian	0.615	0.601	0.719	1.5e-26
TAIR|locus:2061928	131	AT2G40590 [Arabidopsis thalian	0.615	0.610	0.719	1.5e-26
WB|WBGene00004495	117	rps-26 [Caenorhabditis elegans	0.607	0.675	0.567	1.7e-20
FB|FBgn0261597	114	RpS26 "Ribosomal protein S26"	0.476	0.543	0.671	3.5e-20
UNIPROTKB|F1MB60	115	RPS26 "40S ribosomal protein S	0.476	0.539	0.671	9.2e-20
UNIPROTKB|Q56JV1	115	RPS26 "40S ribosomal protein S	0.476	0.539	0.671	9.2e-20
UNIPROTKB|J9P4R8	121	RPS26 "Uncharacterized protein	0.476	0.512	0.671	9.2e-20
UNIPROTKB|P62854	115	RPS26 "40S ribosomal protein S	0.476	0.539	0.671	9.2e-20
UNIPROTKB|F1SPH5	116	LOC100625477 "Uncharacterized	0.476	0.534	0.671	9.2e-20

TAIR|locus:2078491 AT3G56340 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 60/82 (73%), Positives = 63/82 (76%)

Query:     1 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
             MTF              VK IRCSNCGKCCPK  AIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct:     1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query:    59 GYTLPKLYAKMQYCVSCAIHSH 80
             GYTLPKLYAK QYCVSCAIHSH
Sbjct:    61 GYTLPKLYAKTQYCVSCAIHSH 82

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2061883 AT2G40510 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 59/82 (71%), Positives = 62/82 (75%)

Query:     1 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
             MTF              V  IRCSNCGKCCPK  AIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct:     1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query:    59 GYTLPKLYAKMQYCVSCAIHSH 80
             GYTLPKLYAK QYCVSCAIHSH
Sbjct:    61 GYTLPKLYAKTQYCVSCAIHSH 82

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2061928 AT2G40590 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 59/82 (71%), Positives = 62/82 (75%)

Query:     1 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
             MTF              V  IRCSNCGKCCPK  AIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct:     1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query:    59 GYTLPKLYAKMQYCVSCAIHSH 80
             GYTLPKLYAK QYCVSCAIHSH
Sbjct:    61 GYTLPKLYAKTQYCVSCAIHSH 82

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

WB|WBGene00004495 rps-26 [Caenorhabditis elegans (taxid:6239)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 46/81 (56%), Positives = 55/81 (67%)

Query:     1 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD 58
             MTF              V FIRC+NCG+CCPK  AIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct:     1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query:    59 GYTLPKLYAKMQYCVSCAIHS 79
              Y LPKLY K+ YC++CAIHS
Sbjct:    61 QYALPKLYHKLHYCIACAIHS 81

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

FB|FBgn0261597 RpS26 "Ribosomal protein S26" [Drosophila melanogaster (taxid:7227)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query:    18 VKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSC 75
             VK +RC+NC +C PK  AIK+F++RNIVE AAVRD+ EA ++D Y LPKLYAK+ YCVSC
Sbjct:    18 VKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSC 77

Query:    76 AIHS 79
             AIHS
Sbjct:    78 AIHS 81

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0005840 "ribosome" evidence=NAS

UNIPROTKB|F1MB60 RPS26 "40S ribosomal protein S26" [Bos taurus (taxid:9913)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 43/64 (67%), Positives = 52/64 (81%)

Query:    18 VKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSC 75
             V+ IRC+NC +C PK  AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSC
Sbjct:    18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSC 77

Query:    76 AIHS 79
             AIHS
Sbjct:    78 AIHS 81

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q56JV1 RPS26 "40S ribosomal protein S26" [Bos taurus (taxid:9913)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 43/64 (67%), Positives = 52/64 (81%)

Query:    18 VKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSC 75
             V+ IRC+NC +C PK  AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSC
Sbjct:    18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSC 77

Query:    76 AIHS 79
             AIHS
Sbjct:    78 AIHS 81

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9P4R8 RPS26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 43/64 (67%), Positives = 52/64 (81%)

Query:    18 VKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSC 75
             V+ IRC+NC +C PK  AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSC
Sbjct:    18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSC 77

Query:    76 AIHS 79
             AIHS
Sbjct:    78 AIHS 81

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62854 RPS26 "40S ribosomal protein S26" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 43/64 (67%), Positives = 52/64 (81%)

Query:    18 VKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSC 75
             V+ IRC+NC +C PK  AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSC
Sbjct:    18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSC 77

Query:    76 AIHS 79
             AIHS
Sbjct:    78 AIHS 81

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0003729 "mRNA binding" evidence=IDA

GO:0015935 "small ribosomal subunit" evidence=IDA

GO:0033119 "negative regulation of RNA splicing" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SPH5 LOC100625477 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 43/64 (67%), Positives = 52/64 (81%)

Query:    18 VKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSC 75
             V+ IRC+NC +C PK  AIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSC
Sbjct:    19 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSC 78

Query:    76 AIHS 79
             AIHS
Sbjct:    79 AIHS 82

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49171	RS26_PIG	No assigned EC number	0.6732	0.7615	0.8608	yes	no
P62855	RS26_MOUSE	No assigned EC number	0.6732	0.7615	0.8608	yes	no
P62854	RS26_HUMAN	No assigned EC number	0.6732	0.7615	0.8608	yes	no
P62856	RS26_RAT	No assigned EC number	0.6732	0.7615	0.8608	yes	no
Q9GT45	RS26_ANOGA	No assigned EC number	0.7	0.7538	0.8521	yes	no
P49206	RS261_ARATH	No assigned EC number	0.8392	0.8384	0.8320	yes	no
Q54TL8	RS26_DICDI	No assigned EC number	0.5882	0.7538	0.875	yes	no
Q8LPJ7	RS262_ARATH	No assigned EC number	0.8392	0.8384	0.8195	no	no
P39938	RS26A_YEAST	No assigned EC number	0.6	0.8538	0.9327	yes	no
P39939	RS26B_YEAST	No assigned EC number	0.6	0.8538	0.9327	yes	no
Q9LYK9	RS263_ARATH	No assigned EC number	0.8545	0.8230	0.8230	yes	no
Q9UTG4	RS26B_SCHPO	No assigned EC number	0.6886	0.8	0.8739	yes	no
O45499	RS26_CAEEL	No assigned EC number	0.6930	0.7615	0.8461	yes	no
P13008	RS26_DROME	No assigned EC number	0.71	0.7538	0.8596	yes	no
Q56JV1	RS26_BOVIN	No assigned EC number	0.6732	0.7615	0.8608	yes	no
P21772	RS26_NEUCR	No assigned EC number	0.6	0.8692	0.9495	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
PLN00186	109	PLN00186, PLN00186, ribosomal protein S26; Provisi	2e-60
pfam01283	113	pfam01283, Ribosomal_S26e, Ribosomal protein S26e	4e-57
PTZ00172	108	PTZ00172, PTZ00172, 40S ribosomal protein S26; Pro	4e-51
COG4830	108	COG4830, RPS26B, Ribosomal protein S26 [Translatio	3e-36
PRK09335	95	PRK09335, PRK09335, 30S ribosomal protein S26e; Pr	7e-13

>gnl|CDD|215093 PLN00186, PLN00186, ribosomal protein S26; Provisional

 Score =  181 bits (460), Expect = 2e-60
 Identities = 94/109 (86%), Positives = 97/109 (88%), Gaps = 2/109 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCP--KAIKRFLVRNIVEQAAVRDVQEACVYD 58
           MT KRRNGGRNKHGRGHVK IRCSNCGKC P  KAIKRFLVRNIVEQAA+RDVQEACVYD
Sbjct: 1   MTKKRRNGGRNKHGRGHVKRIRCSNCGKCVPKDKAIKRFLVRNIVEQAALRDVQEACVYD 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDDVPK 107
           GYTLPKLYAK+QYC+SCAIHS VVRVRSR NRRIREPP RFRRR D   
Sbjct: 61  GYTLPKLYAKVQYCISCAIHSRVVRVRSRENRRIREPPPRFRRRKDDTP 109

Length = 109

>gnl|CDD|216410 pfam01283, Ribosomal_S26e, Ribosomal protein S26e

 Score =  172 bits (438), Expect = 4e-57
 Identities = 75/113 (66%), Positives = 86/113 (76%), Gaps = 2/113 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCP--KAIKRFLVRNIVEQAAVRDVQEACVYD 58
           M  KRRN GR+K  RGHVK +RC+NCG+C P  KAIKRF+VRNIVE AA RD+ EA VY+
Sbjct: 1   MPKKRRNNGRSKKNRGHVKPVRCTNCGRCVPKDKAIKRFVVRNIVEAAAARDLSEASVYE 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDDVPKAGGA 111
           GY LPKLY K+QYCVSCAIHS +VRVRSR +R+IR PP RFRRR D       
Sbjct: 61  GYALPKLYVKLQYCVSCAIHSKIVRVRSREDRKIRTPPPRFRRRKDKRPPPAK 113

Length = 113

>gnl|CDD|185497 PTZ00172, PTZ00172, 40S ribosomal protein S26; Provisional

 Score =  157 bits (398), Expect = 4e-51
 Identities = 75/103 (72%), Positives = 85/103 (82%), Gaps = 2/103 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCP--KAIKRFLVRNIVEQAAVRDVQEACVYD 58
           MT KRRN GR+KHGRGHVK +RCSNCG+C P  KAIKRF+VRNIV+ A+VRD+ EA VY 
Sbjct: 1   MTSKRRNNGRSKHGRGHVKPVRCSNCGRCVPKDKAIKRFVVRNIVDAASVRDIAEASVYY 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRR 101
           GY LPKLY K QYCVSCAIHS VVRVRSR +R+IR PP+R  R
Sbjct: 61  GYPLPKLYMKQQYCVSCAIHSRVVRVRSREDRKIRTPPKRPFR 103

Length = 108

>gnl|CDD|227167 COG4830, RPS26B, Ribosomal protein S26 [Translation, ribosomal structure and biogenesis]

 Score =  119 bits (300), Expect = 3e-36
 Identities = 62/103 (60%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCP--KAIKRFLVRNIVEQAAVRDVQEACVYD 58
           M  KRRN GRNK GRGHVK++RC NCGK  P  KAIKR  +R+ VE AA RD+ EA +Y 
Sbjct: 1   MPKKRRNRGRNKKGRGHVKYVRCDNCGKAVPKDKAIKRTAIRSPVEAAAARDLSEASIYS 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRR 101
            Y +PK Y K+QYCVSCAIH+ +VRVRSR  R+IR P  R  +
Sbjct: 61  EYAVPKTYNKLQYCVSCAIHARIVRVRSREERKIRAPFNRDGK 103

Length = 108

>gnl|CDD|181785 PRK09335, PRK09335, 30S ribosomal protein S26e; Provisional

 Score = 59.7 bits (145), Expect = 7e-13
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 1  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCP--KAIKRFLVRNIVEQAAVRDVQEACVYD 58
          M  KR N GR K  +GHV +++C NCG+  P  KA+    + + V+    +++++     
Sbjct: 1  MPKKRENRGRRKGDKGHVGYVQCDNCGRRVPRDKAVCVTKMYSPVDPQLAKELEK----K 56

Query: 59 GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQ 97
          G  + +      YCV+CA+H  ++++R    R+ + P +
Sbjct: 57 GAIIARYPVTKCYCVNCAVHLGIIKIRPEEERKKKAPLR 95

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
PLN00186	109	ribosomal protein S26; Provisional	100.0
PF01283	113	Ribosomal_S26e: Ribosomal protein S26e; InterPro:	100.0
PTZ00172	108	40S ribosomal protein S26; Provisional	100.0
PRK09335	95	30S ribosomal protein S26e; Provisional	100.0
KOG1768	115	consensus 40s ribosomal protein S26 [Translation,	100.0
COG4830	108	RPS26B Ribosomal protein S26 [Translation, ribosom	100.0

>PLN00186 ribosomal protein S26; Provisional

Probab=100.00  E-value=5.9e-60  Score=348.94  Aligned_cols=105  Identities=90%  Similarity=1.439  Sum_probs=102.2

Q ss_pred             CCcccccCCCCCCCCCccccEeccCccccccc--ceeEeeecccchhHHHHhHHHhccccccccceeeeeeeeeeeecee
Q 032901            1 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH   78 (130)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgr~vPK--AIKrf~irNiVEaaavRDi~eAsv~~~y~lPKlyvKl~YCVSCAIH   78 (130)
                      ||+|||||||+|+|+|||++|+|+|||+||||  |||+|+|+||||++++|||+|||||++|.|||||+|+|||||||||
T Consensus         1 M~kKRrN~GR~K~~rGhv~~V~C~nCgr~vPKDKAIkrf~irniVe~aa~rDl~~a~vy~~y~lPKly~K~~YCVSCAIH   80 (109)
T PLN00186          1 MTKKRRNGGRNKHGRGHVKRIRCSNCGKCVPKDKAIKRFLVRNIVEQAALRDVQEACVYDGYTLPKLYAKVQYCISCAIH   80 (109)
T ss_pred             CCcccccCCCCCCCCCCCcceeeCCCcccccccceEEEEecccCccHHHHHHHHhhhcccccccchhhhceEEEEeehhc
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             cceeccccccccccCCCCCCCcCCCCC
Q 032901           79 SHVVRVRSRTNRRIREPPQRFRRRDDV  105 (130)
Q Consensus        79 skVVRvRS~e~RK~r~pp~~~~~~~~~  105 (130)
                      ++||||||+|+||+|+||++|++.++.
T Consensus        81 ~~iVRvRs~e~Rk~r~pp~r~~~~~~~  107 (109)
T PLN00186         81 SRVVRVRSRENRRIREPPPRFRRRKDD  107 (109)
T ss_pred             cceeecCChHHccccCCCccccccccC
Confidence            999999999999999999999885543

>PF01283 Ribosomal_S26e: Ribosomal protein S26e; InterPro: IPR000892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.5e-60  Score=353.76  Aligned_cols=108  Identities=68%  Similarity=1.169  Sum_probs=71.0

Q ss_pred             CCcccccCCCCCCCCCccccEeccCccccccc--ceeEeeecccchhHHHHhHHHhccccccccceeeeeeeeeeeecee
Q 032901            1 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH   78 (130)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgr~vPK--AIKrf~irNiVEaaavRDi~eAsv~~~y~lPKlyvKl~YCVSCAIH   78 (130)
                      ||+|||||||+|||+||+++|+|+|||+||||  |||+|+|+||||++++|||+|||||++|+|||||+|+|||||||||
T Consensus         1 M~~KRrN~Gr~KkgrGhv~~V~C~nCgr~vPKDKAIkrf~i~niVeaaa~rdi~~a~v~~~y~lPKlyvK~~YCvSCAIH   80 (113)
T PF01283_consen    1 MTKKRRNNGRSKKGRGHVQPVRCDNCGRCVPKDKAIKRFVIRNIVEAAAVRDISEASVYDAYVLPKLYVKLYYCVSCAIH   80 (113)
T ss_dssp             -----TTTTSS-SSSS---EEE-TTTB-EEECCCSEEEEEEEESS-CCCHHHHHHCB-SSS--S-EEEEEEEE-CHHHHH
T ss_pred             CCcccccCCCCCCCCCCCcCEeeCcccccCcCCceEEEEEccCCccHHHHHHHhhcceeeecccccceeEEEEeeeeeee
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             cceeccccccccccCCCCCCCcCCCCCCCC
Q 032901           79 SHVVRVRSRTNRRIREPPQRFRRRDDVPKA  108 (130)
Q Consensus        79 skVVRvRS~e~RK~r~pp~~~~~~~~~~~~  108 (130)
                      ++|||+||+|+||+|+||++|++.++..++
T Consensus        81 ~~IVr~Rs~e~RK~r~~p~~~~~~~~~~~~  110 (113)
T PF01283_consen   81 SKIVRVRSREERKDRTPPPRFRPRKQGQKP  110 (113)
T ss_dssp             TTSS----TCCCC--S--------------
T ss_pred             ccccccCChHHccccCCCCcCCcccccccc
Confidence            999999999999999999999997655543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. One of these families, the S26E family, includes mammalian S26 []; Octopus S26 []; Drosophila S26 (DS31) []; plant cytoplasmic S26; and fungal S26 []. These proteins have 114 to 127 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3U5G_a 3U5C_a 2XZM_5 2XZN_5.

>PTZ00172 40S ribosomal protein S26; Provisional

Probab=100.00  E-value=2.1e-59  Score=345.61  Aligned_cols=102  Identities=74%  Similarity=1.226  Sum_probs=99.9

Q ss_pred             CCcccccCCCCCCCCCccccEeccCccccccc--ceeEeeecccchhHHHHhHHHhccccccccceeeeeeeeeeeecee
Q 032901            1 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH   78 (130)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgr~vPK--AIKrf~irNiVEaaavRDi~eAsv~~~y~lPKlyvKl~YCVSCAIH   78 (130)
                      ||+|||||||+|+|+|||++|+|+|||+||||  |||+|+|+||||+++++||+|||+|++|+|||||+|+|||||||||
T Consensus         1 M~kKRrN~GR~K~~rGhv~~V~C~nCgr~vPKDKAIkrf~irniVe~aa~rDl~~a~v~~~y~lPKly~k~~YCVSCAIH   80 (108)
T PTZ00172          1 MTSKRRNNGRSKHGRGHVKPVRCSNCGRCVPKDKAIKRFVVRNIVDAASVRDIAEASVYYGYPLPKLYMKQQYCVSCAIH   80 (108)
T ss_pred             CCcccccCCCCCCCCCCCccEEeCCccccccccceEEEEeccCCccHHHHHHHHHhhchhccccccceeeeEEeeehhhc
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             cceeccccccccccCCCCCCCcCC
Q 032901           79 SHVVRVRSRTNRRIREPPQRFRRR  102 (130)
Q Consensus        79 skVVRvRS~e~RK~r~pp~~~~~~  102 (130)
                      ++||||||+|+||+|+||+++...
T Consensus        81 ~~iVRvRs~e~Rk~r~pp~r~~~~  104 (108)
T PTZ00172         81 SRVVRVRSREDRKIRTPPKRPFRP  104 (108)
T ss_pred             CCeeecCChHHccccCCCCCCCCC
Confidence            999999999999999999887653

>PRK09335 30S ribosomal protein S26e; Provisional

Probab=100.00  E-value=1.3e-53  Score=308.97  Aligned_cols=92  Identities=28%  Similarity=0.644  Sum_probs=90.1

Q ss_pred             CCcccccCCCCCCCCCccccEeccCccccccc--ceeEeeecccchhHHHHhHHHhccccccccceeeeeeeeeeeecee
Q 032901            1 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH   78 (130)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgr~vPK--AIKrf~irNiVEaaavRDi~eAsv~~~y~lPKlyvKl~YCVSCAIH   78 (130)
                      ||+||+||||+|+|+||+++|+|+|||+||||  |||+|+|+||||+++++||+||++|    |||||+|+|||||||||
T Consensus         1 M~kKRrn~GR~K~~rGhv~~V~C~nCgr~vPKDKAIkrf~i~n~Ve~a~~rdl~~a~~~----lpk~~~k~~YCvSCAiH   76 (95)
T PRK09335          1 MPKKRENRGRRKGDKGHVGYVQCDNCGRRVPRDKAVCVTKMYSPVDPQLAKELEKKGAI----IARYPVTKCYCVNCAVH   76 (95)
T ss_pred             CCcccccCCCCCCCCCCCccEEeCCCCCcCcCCceEEEEEecCCCCHHHHHHHHhCcee----eeeeeeeeEEechhhhh
Confidence            99999999999999999999999999999999  9999999999999999999999988    99999999999999999


Q ss_pred             cceeccccccccccCCCC
Q 032901           79 SHVVRVRSRTNRRIREPP   96 (130)
Q Consensus        79 skVVRvRS~e~RK~r~pp   96 (130)
                      ++|||+||+|+||+|+|.
T Consensus        77 ~~IVrvRs~e~Rk~r~~~   94 (95)
T PRK09335         77 LGIIKIRPEEERKKKAPL   94 (95)
T ss_pred             ccccccCChHHcccccCC
Confidence            999999999999999863

>KOG1768 consensus 40s ribosomal protein S26 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.6e-51  Score=304.29  Aligned_cols=106  Identities=71%  Similarity=1.187  Sum_probs=102.0

Q ss_pred             CCcccccCCCCCCCCCccccEeccCccccccc--ceeEeeecccchhHHHHhHHHhccccccccceeeeeeeeeeeecee
Q 032901            1 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH   78 (130)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgr~vPK--AIKrf~irNiVEaaavRDi~eAsv~~~y~lPKlyvKl~YCVSCAIH   78 (130)
                      |++||+|+|++|+|+||+.+|+|+||++||||  |||+|+|+||||++++|||+|||+|++|+|||||+|||||||||||
T Consensus         1 m~~kr~~~gr~k~~~g~v~~i~c~~c~~~~~kdKaIk~f~i~niVEaaavrdiseasv~d~y~~pKly~Klhycvscaih   80 (115)
T KOG1768|consen    1 MTKKRRNAGRNKKGRGHVIPIRCTNCGRCMPKDKAIKRFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH   80 (115)
T ss_pred             CCcccccCCCCCCCCcceeeeeeccccccchHHHHHHHHHHHHHHHHHHhhhhhhheeccccccccccceeeeeEeeeee
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             cceeccccccccccCCCCCCCcCCCCCC
Q 032901           79 SHVVRVRSRTNRRIREPPQRFRRRDDVP  106 (130)
Q Consensus        79 skVVRvRS~e~RK~r~pp~~~~~~~~~~  106 (130)
                      ++|||+||.|.||+|+||++|.+.....
T Consensus        81 skVvR~rS~e~rrir~pp~rf~~~~~~~  108 (115)
T KOG1768|consen   81 SKVVRVRSREARRIRTPPPRFSPRAPSL  108 (115)
T ss_pred             eeeeccchhhhhcccCCCcccCcccccc
Confidence            9999999999999999999887744333

>COG4830 RPS26B Ribosomal protein S26 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.7e-49  Score=288.53  Aligned_cols=95  Identities=64%  Similarity=1.125  Sum_probs=94.6

Q ss_pred             CCcccccCCCCCCCCCccccEeccCccccccc--ceeEeeecccchhHHHHhHHHhccccccccceeeeeeeeeeeecee
Q 032901            1 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH   78 (130)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgr~vPK--AIKrf~irNiVEaaavRDi~eAsv~~~y~lPKlyvKl~YCVSCAIH   78 (130)
                      |||||+||||+|+|+||+.+|+|+|||..|||  |||+|.|+|+||+++++||+++++|+.|.+||+|.|++||||||||
T Consensus         1 mpkkR~N~GR~K~~rGhv~~v~CdnCg~~vPkdKAikr~~i~s~Ve~a~~rdL~~asIy~~y~vpk~~~k~qyCVsCAih   80 (108)
T COG4830           1 MPKKRRNRGRNKKGRGHVKYVRCDNCGKAVPKDKAIKRTAIRSPVEAAAARDLSEASIYSEYAVPKTYNKLQYCVSCAIH   80 (108)
T ss_pred             CcchhhhcCCCCCCCCCccceeeccccccCCccceeeEeeccCcccHHHHHHHhhceeeeeeeccccccceeeeeeeeee
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             cceeccccccccccCCC
Q 032901           79 SHVVRVRSRTNRRIREP   95 (130)
Q Consensus        79 skVVRvRS~e~RK~r~p   95 (130)
                      ++||||||+|+||+++|
T Consensus        81 ~~IvrVRSre~RK~r~p   97 (108)
T COG4830          81 ARIVRVRSREERKIRAP   97 (108)
T ss_pred             eeEEEEecchhhhhcCC
Confidence            99999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
3u5c_a	119	The Structure Of The Eukaryotic Ribosome At 3.0 A R		5e-17
3zey_V	111	High-resolution Cryo-electron Microscopy Structure		2e-11
2xzm_5	119	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-11

>pdb|3U5C|AA Chain a, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 119

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 18 VKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSC 75
          VK +RC NC K  PK  AIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ YCVSC
Sbjct: 18 VKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSC 77
Query: 76 AIHS 79
          AIH+
Sbjct: 78 AIHA 81

>pdb|3ZEY|V Chain V, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 111

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 4/67 (5%)
Query: 18 VKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVY--DGYTLPKLYAKMQYCV 73
          V+ + C NC +  PK  ++ RF+VR +++QA+ RDV EA +    G+ +PKLY K +YC+
Sbjct: 20 VRPVHCFNCSRLVPKDKSVGRFVVRRMLDQASARDVAEASLIYGSGFPMPKLYMKQRYCI 79
Query: 74 SCAIHSH 80
          +CAIHS 
Sbjct: 80 ACAIHSR 86

>pdb|2XZM|5 Chain 5, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 119

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 4/67 (5%)
Query: 18 VKFIRCSNCGK--CCPKAIKRFLVRNIVEQAAVRDVQEACVYDG--YTLPKLYAKMQYCV 73
           + + C+NCG+     KA+KR+ VR++V+ ++ RD+Q+   ++     +PKLY K+QYC+
Sbjct: 18 TRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCI 77
Query: 74 SCAIHSH 80
          SCAIHS 
Sbjct: 78 SCAIHSR 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	2e-44
2xzm_5	119	Ribosomal protein S26E containing protein; ribosom	9e-42

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252

 Score =  140 bits (353), Expect = 2e-44
 Identities = 7/116 (6%), Positives = 17/116 (14%), Gaps = 2/116 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCP--KAIKRFLVRNIVEQAAVRDVQEACVYD 58
           M+         +  +  +               +        + V    V    E  V  
Sbjct: 1   MSLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLA 60

Query: 59  GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDDVPKAGGALGQ 114
              +  +          +       V          P                  +
Sbjct: 61  ARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFK 116

>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5 Length = 119

 Score =  133 bits (336), Expect = 9e-42
 Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 4/111 (3%)

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCP--KAIKRFLVRNIVEQAAVRDVQEACVYD 58
           M  KRRN GR++  RGH + + C+NCG+     KA+KR+ VR++V+ ++ RD+Q+   ++
Sbjct: 1   MPVKRRNAGRSQKNRGHTRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFE 60

Query: 59  --GYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRIREPPQRFRRRDDVPK 107
                +PKLY K+QYC+SCAIHS VVRVR   +RRIR PP R R+   V  
Sbjct: 61  NEKQGIPKLYVKLQYCISCAIHSRVVRVRCAEDRRIRRPPIRNRKPQVVKT 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
3u5c_a	119	40S ribosomal protein S26-A, 40S ribosomal protein	100.0
2xzm_5	119	Ribosomal protein S26E containing protein; ribosom	100.0

>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a

Probab=100.00  E-value=6.4e-63  Score=368.19  Aligned_cols=106  Identities=61%  Similarity=1.004  Sum_probs=94.9

Q ss_pred             CCcccccCCCCCCCCCccccEeccCccccccc--ceeEeeecccchhHHHHhHHHhccccccccceeeeeeeeeeeecee
Q 032901            1 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH   78 (130)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgr~vPK--AIKrf~irNiVEaaavRDi~eAsv~~~y~lPKlyvKl~YCVSCAIH   78 (130)
                      ||+|||||||+|||||||++|+|+|||+||||  |||+|+|+||||++++|||+|||||++|+|||||+|+|||||||||
T Consensus         1 M~kKRrN~GR~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaavRDi~easv~~~y~lPKlyvKl~YCVSCAIH   80 (119)
T 3u5c_a            1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIH   80 (119)
T ss_dssp             -CCCCSSTTSCCCSCSCCCEEECTTTCCEEEGGGSCEEEEEECSSCSSTHHHHHHTCCSSSCCCCCEEEEEECCSHHHHH
T ss_pred             CCcccccCCCCCCCCCCCccEeeccccccccccceeeEEeCcCcccHHHHHHHHhccchhhccccceeEEEEEeeeeeee
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             cceeccccccccccCCCCCCCcCCCCCC
Q 032901           79 SHVVRVRSRTNRRIREPPQRFRRRDDVP  106 (130)
Q Consensus        79 skVVRvRS~e~RK~r~pp~~~~~~~~~~  106 (130)
                      ++||||||+|+||+|+||++|++..+.+
T Consensus        81 skVVR~RS~e~Rk~r~pp~r~~~~~~~~  108 (119)
T 3u5c_a           81 ARIVRVRSREDRKNRAPPQRPRFNRENK  108 (119)
T ss_dssp             TSSCCCCCTTTTSCCCCC----------
T ss_pred             ccccccCChHHcccCCCCCccCcccCCc
Confidence            9999999999999999999999966644

>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5

Probab=100.00  E-value=3.1e-60  Score=353.69  Aligned_cols=101  Identities=50%  Similarity=0.982  Sum_probs=93.8

Q ss_pred             CCcccccCCCCCCCCCccccEeccCccccccc--ceeEeeecccchhHHHHhHHHhcccc--ccccceeeeeeeeeeeec
Q 032901            1 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPK--AIKRFLVRNIVEQAAVRDVQEACVYD--GYTLPKLYAKMQYCVSCA   76 (130)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgr~vPK--AIKrf~irNiVEaaavRDi~eAsv~~--~y~lPKlyvKl~YCVSCA   76 (130)
                      ||+|||||||+|||||||++|+|+|||+||||  |||+|+|+||||++++|||+|||+|+  +|+|||||+|+|||||||
T Consensus         1 M~kKRrN~GR~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irniVeaaavrDi~ea~v~~~~~y~lPKlyvK~~YCVSCA   80 (119)
T 2xzm_5            1 MPVKRRNAGRSQKNRGHTRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCISCA   80 (119)
T ss_dssp             -CCCCSSTTCCCCSSSCCCEEECTTTCCEEETTTSEECCEEECSSCHHHHHHHHHSBCSCCCSCCSCCEEECCEECHHHH
T ss_pred             CCcccccCCCCCCCCCCCccEeeCCccccCcccceeEEEEeccCccHHHHHHHHhccccccccccccceeeeEEEeeeee
Confidence            99999999999999999999999999999999  99999999999999999999999999  999999999999999999


Q ss_pred             eecceeccccccccccCCCCCCCcC
Q 032901           77 IHSHVVRVRSRTNRRIREPPQRFRR  101 (130)
Q Consensus        77 IHskVVRvRS~e~RK~r~pp~~~~~  101 (130)
                      ||++||||||+|+||+|+||++|++
T Consensus        81 IH~kIVRvRs~e~Rk~r~pp~~~~~  105 (119)
T 2xzm_5           81 IHSRVVRVRCAEDRRIRRPPIRNRK  105 (119)
T ss_dssp             HHTTSSCCCCTGGGGCCCC------
T ss_pred             eeccccccCCHHHcccCCCCCcccc
Confidence            9999999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00