Citrus Sinensis ID: 032911

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHccccccEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEEEcccccccEEccccccccHHHHHHHHHcccccccEEEEEEcccccccHHHHHHcccccEEEEEEc
Coil and Loop (DISEMBL)
MVRVSVLNDALKSMYNAEkrgkrqvmirPSSKVIIKFLLVMQKhgyigefeyvddhraGKIVVELNGrlnkcgvisprfdvgvkEIEGWtarllpsrqfgYIVLttsagimdheearrknvggkvlgffy
Flexible Loop (DISEMBL)
MVRVSVLNDALKSmynaekrgkrqvmirpsSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVElngrlnkcgvisprFDVGVKEIEGWtarllpsrqfGYIVLTTsagimdheearrknvggkvlgffy
Low Complexity Region (SEG)
MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Disordered region (IsUnstruct)
*************************MIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDH*******VGGKVLGF**
Disordered Region (DISOPRED)
*VRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISP***V**KEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Disordered Region (DISEMBL)
MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Disordered Region (DISPRO)
**RVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
P42798	130	40S ribosomal protein S15	yes	no	1.0	1.0	0.976	2e-70
Q00332	130	40S ribosomal protein S15	N/A	no	1.0	1.0	0.969	4e-70
Q9LX88	130	40S ribosomal protein S15	yes	no	1.0	1.0	0.961	2e-69
Q9AT34	130	40S ribosomal protein S15	N/A	no	1.0	1.0	0.961	2e-69
O80646	130	40S ribosomal protein S15	no	no	1.0	1.0	0.907	7e-66
P0C0W1	130	40S ribosomal protein S22	yes	no	1.0	1.0	0.792	8e-58
P33953	130	40S ribosomal protein S22	N/A	no	1.0	1.0	0.776	1e-57
Q6CW21	130	40S ribosomal protein S22	yes	no	1.0	1.0	0.776	1e-57
Q3E7Y3	130	40S ribosomal protein S22	yes	no	1.0	1.0	0.784	2e-57
Q6FMW9	130	40S ribosomal protein S22	yes	no	1.0	1.0	0.784	2e-57

>sp|P42798|R15A1_ARATH 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2

 Score =  264 bits (674), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/130 (97%), Positives = 130/130 (100%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q00332|RS15A_BRANA 40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3

 Score =  262 bits (670), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/130 (96%), Positives = 130/130 (100%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Brassica napus (taxid: 3708)

>sp|Q9LX88|R15A4_ARATH 40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3

 Score =  260 bits (665), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/130 (96%), Positives = 129/130 (99%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT34|RS15A_DAUCA 40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3

 Score =  259 bits (663), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/130 (96%), Positives = 129/130 (99%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Daucus carota (taxid: 4039)

>sp|O80646|R15A3_ARATH 40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2

 Score =  248 bits (634), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 118/130 (90%), Positives = 124/130 (95%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHR+GK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFGYIVLTTSAGIMDHEEAR+KN
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Arabidopsis thaliana (taxid: 3702)

>sp|P0C0W1|RS22A_YEAST 40S ribosomal protein S22-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS22A PE=1 SV=2

 Score =  221 bits (564), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 117/130 (90%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct: 1   MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct: 61  IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120

Query: 121 VGGKVLGFFY 130
           V GK+LGF Y
Sbjct: 121 VSGKILGFVY 130

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P33953|RS22_KLUMA 40S ribosomal protein S22 OS=Kluyveromyces marxianus GN=RPS22 PE=3 SV=3

 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 116/130 (89%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct: 1   MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV+LNGRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+
Sbjct: 61  IVVQLNGRLNKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKH 120

Query: 121 VGGKVLGFFY 130
           V GK+LGF Y
Sbjct: 121 VSGKILGFVY 130

Kluyveromyces marxianus (taxid: 4911)

>sp|Q6CW21|RS22_KLULA 40S ribosomal protein S22 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPS22 PE=3 SV=3

 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 116/130 (89%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct: 1   MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV+LNGRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+
Sbjct: 61  IVVQLNGRLNKCGVISPRFNVKIADVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKH 120

Query: 121 VGGKVLGFFY 130
           V GK+LGF Y
Sbjct: 121 VSGKILGFVY 130

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q3E7Y3|RS22B_YEAST 40S ribosomal protein S22-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS22B PE=1 SV=3

 Score =  221 bits (562), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 117/130 (90%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M R SVL DAL ++ NAEK GKRQV++RPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct: 1   MTRSSVLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct: 61  IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120

Query: 121 VGGKVLGFFY 130
           V GK+LGF Y
Sbjct: 121 VSGKILGFVY 130

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FMW9|RS22_CANGA 40S ribosomal protein S22 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPS22 PE=3 SV=3

 Score =  220 bits (561), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 117/130 (90%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQ+HGYIGEFEY+DDHR+GK
Sbjct: 1   MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQRHGYIGEFEYIDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct: 61  IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120

Query: 121 VGGKVLGFFY 130
           V GK+LGF Y
Sbjct: 121 VSGKILGFVY 130

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
351720707	130	uncharacterized protein LOC100305645 [Gl	1.0	1.0	1.0	2e-69
313586479	131	40S ribosomal protein S15C [Hevea brasil	1.0	0.992	0.992	2e-69
255575122	130	30S ribosomal protein S8, putative [Rici	1.0	1.0	0.992	2e-69
388496870	130	unknown [Lotus japonicus]	1.0	1.0	0.992	3e-69
414875627	152	TPA: putative ribosomal protein S8 famil	1.0	0.855	0.984	5e-69
388490984	130	unknown [Medicago truncatula] gi|3885050	1.0	1.0	0.984	7e-69
255584778	130	30S ribosomal protein S8, putative [Rici	1.0	1.0	0.992	7e-69
357125783	130	PREDICTED: 40S ribosomal protein S15a-1-	1.0	1.0	0.984	8e-69
192910724	130	cytoplasmic ribosomal protein S15a [Elae	1.0	1.0	0.992	9e-69
15223001	130	40S ribosomal protein S15a-1 [Arabidopsi	1.0	1.0	0.976	1e-68

>gi|351720707|ref|NP_001238465.1| uncharacterized protein LOC100305645 [Glycine max] gi|356497480|ref|XP_003517588.1| PREDICTED: 40S ribosomal protein S15a-1-like [Glycine max] gi|356521929|ref|XP_003529602.1| PREDICTED: 40S ribosomal protein S15a-1-like [Glycine max] gi|356540966|ref|XP_003538955.1| PREDICTED: 40S ribosomal protein S15a-1-like [Glycine max] gi|356541097|ref|XP_003539019.1| PREDICTED: 40S ribosomal protein S15a-1-like [Glycine max] gi|193850547|gb|ACF22877.1| putative ribosomal protein S15 [Glycine max] gi|255626173|gb|ACU13431.1| unknown [Glycine max]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586479|gb|ADR71250.1| 40S ribosomal protein S15C [Hevea brasiliensis]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK
Sbjct: 2   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 61

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 62  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 121

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 122 VGGKVLGFFY 131

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575122|ref|XP_002528466.1| 30S ribosomal protein S8, putative [Ricinus communis] gi|223532142|gb|EEF33949.1| 30S ribosomal protein S8, putative [Ricinus communis] gi|313586475|gb|ADR71248.1| 40S ribosomal protein S15A [Hevea brasiliensis] gi|313586477|gb|ADR71249.1| 40S ribosomal protein S15B [Hevea brasiliensis]

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496870|gb|AFK36501.1| unknown [Lotus japonicus]

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRAGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRAGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414875627|tpg|DAA52758.1| TPA: putative ribosomal protein S8 family protein [Zea mays]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 129/130 (99%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQ+HGYIGEFEYVDDHRAGK
Sbjct: 23  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLTVMQRHGYIGEFEYVDDHRAGK 82

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 83  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 142

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 143 VGGKVLGFFY 152

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490984|gb|AFK33558.1| unknown [Medicago truncatula] gi|388505028|gb|AFK40580.1| unknown [Medicago truncatula]

 Score =  264 bits (675), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 130/130 (100%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584778|ref|XP_002533107.1| 30S ribosomal protein S8, putative [Ricinus communis] gi|223527098|gb|EEF29279.1| 30S ribosomal protein S8, putative [Ricinus communis]

 Score =  264 bits (675), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 129/130 (99%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALK MYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK
Sbjct: 1   MVRVSVLNDALKCMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125783|ref|XP_003564569.1| PREDICTED: 40S ribosomal protein S15a-1-like [Brachypodium distachyon] gi|357133356|ref|XP_003568291.1| PREDICTED: 40S ribosomal protein S15a-1-like [Brachypodium distachyon] gi|76573307|gb|ABA46758.1| unknown [Solanum tuberosum] gi|77745497|gb|ABB02647.1| unknown [Solanum tuberosum] gi|301641374|gb|ADK87348.1| 40S ribosomal protein S15a [Triticum aestivum] gi|388511815|gb|AFK43969.1| unknown [Medicago truncatula]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 130/130 (100%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910724|gb|ACF06470.1| cytoplasmic ribosomal protein S15a [Elaeis guineensis] gi|192910726|gb|ACF06471.1| cytoplasmic ribosomal protein S15a [Elaeis guineensis]

 Score =  264 bits (674), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 129/130 (99%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223001|ref|NP_172256.1| 40S ribosomal protein S15a-1 [Arabidopsis thaliana] gi|15238544|ref|NP_200793.1| 40S ribosomal protein S15a-1 [Arabidopsis thaliana] gi|42571385|ref|NP_973783.1| 40S ribosomal protein S15a-1 [Arabidopsis thaliana] gi|297796939|ref|XP_002866354.1| RPS15A [Arabidopsis lyrata subsp. lyrata] gi|297815756|ref|XP_002875761.1| RPS15A [Arabidopsis lyrata subsp. lyrata] gi|297849076|ref|XP_002892419.1| RPS15A [Arabidopsis lyrata subsp. lyrata] gi|1173218|sp|P42798.2|R15A1_ARATH RecName: Full=40S ribosomal protein S15a-1 gi|8439890|gb|AAF75076.1|AC007583_12 Strong similarity to 40S ribosomal protein S15A from Arabidopsis thaliana gb|L27461. EST gb|R30315 comes from this gene [Arabidopsis thaliana] gi|12083302|gb|AAG48810.1|AF332447_1 putative ribosomal protein S15 [Arabidopsis thaliana] gi|13430744|gb|AAK25994.1|AF360284_1 putative ribosomal protein S15 [Arabidopsis thaliana] gi|14423370|gb|AAK62367.1|AF386922_1 40S ribosomal protein S15A [Arabidopsis thaliana] gi|440824|gb|AAA61608.1| ribosomal protein S15 [Arabidopsis thaliana] gi|2150130|gb|AAB58750.1| cytoplasmic ribosomal protein S15a [Arabidopsis thaliana] gi|9757906|dbj|BAB08353.1| 40S ribosomal protein S15A [Arabidopsis thaliana] gi|14334968|gb|AAK59661.1| putative cytoplasmic ribosomal protein S15a [Arabidopsis thaliana] gi|14596085|gb|AAK68770.1| Putative 40S ribosomal protein S15A [Arabidopsis thaliana] gi|15293213|gb|AAK93717.1| putative ribosomal protein S15 [Arabidopsis thaliana] gi|17104627|gb|AAL34202.1| putative cytoplasmic ribosomal protein S15a [Arabidopsis thaliana] gi|20148287|gb|AAM10034.1| similar to 40S ribosomal protein S15A [Arabidopsis thaliana] gi|20148721|gb|AAM10251.1| similar to 40S ribosomal protein S15A [Arabidopsis thaliana] gi|21593169|gb|AAM65118.1| cytoplasmic ribosomal protein S15a-like [Arabidopsis thaliana] gi|21593909|gb|AAM65874.1| cytoplasmic ribosomal protein S15a-like [Arabidopsis thaliana] gi|23397065|gb|AAN31818.1| putative cytoplasmic ribosomal protein S15a [Arabidopsis thaliana] gi|222424838|dbj|BAH20371.1| AT1G07770 [Arabidopsis thaliana] gi|297312189|gb|EFH42613.1| RPS15A [Arabidopsis lyrata subsp. lyrata] gi|297321599|gb|EFH52020.1| RPS15A [Arabidopsis lyrata subsp. lyrata] gi|297338261|gb|EFH68678.1| RPS15A [Arabidopsis lyrata subsp. lyrata] gi|332009859|gb|AED97242.1| 40S ribosomal protein S15a-1 [Arabidopsis thaliana] gi|332190056|gb|AEE28177.1| 40S ribosomal protein S15a-1 [Arabidopsis thaliana] gi|332190057|gb|AEE28178.1| 40S ribosomal protein S15a-1 [Arabidopsis thaliana]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/130 (97%), Positives = 130/130 (100%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2026525	130	RPS15A "ribosomal protein S15A	1.0	1.0	0.976	6.7e-65
TAIR|locus:2168118	130	AT5G59850 [Arabidopsis thalian	1.0	1.0	0.976	6.7e-65
TAIR|locus:2075231	130	RPS15AD "ribosomal protein S15	1.0	1.0	0.961	4.7e-64
SGD|S000003726	130	RPS22A "Protein component of t	1.0	1.0	0.792	1.3e-52
UNIPROTKB|F1NXW3	136	RPS15A "Uncharacterized protei	1.0	0.955	0.792	2.1e-52
SGD|S000004359	130	RPS22B "Protein component of t	1.0	1.0	0.784	2.1e-52
CGD|CAL0000540	130	RPS22A [Candida albicans (taxi	1.0	1.0	0.776	4.4e-52
CGD|CAF0007456	130	orf19.3061.1 [Candida albicans	1.0	1.0	0.776	4.4e-52
FB|FBgn0010198	130	RpS15Aa "Ribosomal protein S15	1.0	1.0	0.784	5.6e-52
UNIPROTKB|Q76I82	130	RPS15A "40S ribosomal protein	1.0	1.0	0.784	5.6e-52

TAIR|locus:2026525 RPS15A "ribosomal protein S15A" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 127/130 (97%), Positives = 130/130 (100%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct:     1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query:   121 VGGKVLGFFY 130
             VGGKVLGFFY
Sbjct:   121 VGGKVLGFFY 130

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=ISS;IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2168118 AT5G59850 [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 127/130 (97%), Positives = 130/130 (100%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct:     1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query:   121 VGGKVLGFFY 130
             VGGKVLGFFY
Sbjct:   121 VGGKVLGFFY 130

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2075231 RPS15AD "ribosomal protein S15A D" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/130 (96%), Positives = 129/130 (99%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GK
Sbjct:     1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query:   121 VGGKVLGFFY 130
             VGGKVLGFFY
Sbjct:   121 VGGKVLGFFY 130

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

SGD|S000003726 RPS22A "Protein component of the small (40S) ribosomal subunit" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 103/130 (79%), Positives = 117/130 (90%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct:     1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct:    61 IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120

Query:   121 VGGKVLGFFY 130
             V GK+LGF Y
Sbjct:   121 VSGKILGFVY 130

GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IC

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1NXW3 RPS15A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 103/130 (79%), Positives = 116/130 (89%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGK
Sbjct:     7 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 66

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFGYIVLTTSAGIMDHEEARRK+
Sbjct:    67 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKH 126

Query:   121 VGGKVLGFFY 130
              GGK+LGFF+
Sbjct:   127 TGGKILGFFF 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

SGD|S000004359 RPS22B "Protein component of the small (40S) ribosomal subunit" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 102/130 (78%), Positives = 117/130 (90%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             M R SVL DAL ++ NAEK GKRQV++RPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct:     1 MTRSSVLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct:    61 IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120

Query:   121 VGGKVLGFFY 130
             V GK+LGF Y
Sbjct:   121 VSGKILGFVY 130

GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IC

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

CGD|CAL0000540 RPS22A [Candida albicans (taxid:5476)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 101/130 (77%), Positives = 115/130 (88%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct:     1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLTVMQKHGYIGEFEYIDDHRSGK 60

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVV+LNGRLNKCGVI PRF+V + +IE WT  LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct:    61 IVVQLNGRLNKCGVIQPRFNVKINDIERWTDNLLPARQFGYVILTTSAGIMDHEEARRKH 120

Query:   121 VGGKVLGFFY 130
             V GK+LGF Y
Sbjct:   121 VSGKILGFVY 130

GO:0005634 "nucleus" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

CGD|CAF0007456 orf19.3061.1 [Candida albicans (taxid:5476)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 101/130 (77%), Positives = 115/130 (88%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct:     1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLTVMQKHGYIGEFEYIDDHRSGK 60

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVV+LNGRLNKCGVI PRF+V + +IE WT  LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct:    61 IVVQLNGRLNKCGVIQPRFNVKINDIERWTDNLLPARQFGYVILTTSAGIMDHEEARRKH 120

Query:   121 VGGKVLGFFY 130
             V GK+LGF Y
Sbjct:   121 VSGKILGFVY 130

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

FB|FBgn0010198 RpS15Aa "Ribosomal protein S15Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 102/130 (78%), Positives = 115/130 (88%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             MVR++VL DALK + NAEKRGKRQV++RP SKVIIKFL VM KHGYIGEFE VDDHR+GK
Sbjct:     1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGK 60

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct:    61 IVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120

Query:   121 VGGKVLGFFY 130
             +GGK+LGFF+
Sbjct:   121 LGGKILGFFF 130

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0005811 "lipid particle" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

UNIPROTKB|Q76I82 RPS15A "40S ribosomal protein S15a" [Bos taurus (taxid:9913)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 102/130 (78%), Positives = 116/130 (89%)

Query:     1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
             MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGK
Sbjct:     1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60

Query:    61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             IVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+
Sbjct:    61 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120

Query:   121 VGGKVLGFFY 130
              GGK+LGFF+
Sbjct:   121 TGGKILGFFF 130

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UX92	RS8_SULSO	No assigned EC number	0.4887	1.0	0.9774	yes	no
C4KHH1	RS8_SULIK	No assigned EC number	0.4887	1.0	0.9774	yes	no
Q00332	RS15A_BRANA	No assigned EC number	0.9692	1.0	1.0	N/A	no
Q90YQ8	RS15A_ICTPU	No assigned EC number	0.7692	1.0	1.0	N/A	no
Q9AT34	RS15A_DAUCA	No assigned EC number	0.9615	1.0	1.0	N/A	no
A8MAJ5	RS8_CALMQ	No assigned EC number	0.5384	1.0	1.0	yes	no
A4YCY1	RS8_METS5	No assigned EC number	0.4887	1.0	0.9774	yes	no
Q76I82	RS15A_BOVIN	No assigned EC number	0.7846	1.0	1.0	yes	no
P50891	RS15A_PARLI	No assigned EC number	0.7615	1.0	1.0	N/A	no
C3NEF8	RS8_SULIY	No assigned EC number	0.4887	1.0	0.9774	yes	no
Q7KR04	RS15B_DROME	No assigned EC number	0.7769	1.0	1.0	yes	no
Q6XIM8	RS15A_DROYA	No assigned EC number	0.7846	1.0	1.0	N/A	no
O14469	RS22_SCHPO	No assigned EC number	0.7153	1.0	1.0	yes	no
Q12ZT6	RS8_METBU	No assigned EC number	0.5076	1.0	1.0	yes	no
Q96W54	RS22_CANAL	No assigned EC number	0.7769	1.0	1.0	N/A	no
P33953	RS22_KLUMA	No assigned EC number	0.7769	1.0	1.0	N/A	no
Q3E7Y3	RS22B_YEAST	No assigned EC number	0.7846	1.0	1.0	yes	no
C3NH94	RS8_SULIN	No assigned EC number	0.4887	1.0	0.9774	yes	no
Q9LX88	R15A4_ARATH	No assigned EC number	0.9615	1.0	1.0	yes	no
B8GKE8	RS8_METPE	No assigned EC number	0.4461	1.0	1.0	yes	no
C3MQ74	RS8_SULIL	No assigned EC number	0.4887	1.0	0.9774	yes	no
P62244	RS15A_HUMAN	No assigned EC number	0.7846	1.0	1.0	yes	no
P62245	RS15A_MOUSE	No assigned EC number	0.7846	1.0	1.0	yes	no
P62246	RS15A_RAT	No assigned EC number	0.7846	1.0	1.0	yes	no
O05636	RS8_SULAC	No assigned EC number	0.4736	1.0	0.9774	yes	no
O80646	R15A3_ARATH	No assigned EC number	0.9076	1.0	1.0	no	no
Q7RV75	RS22_NEUCR	No assigned EC number	0.7769	1.0	1.0	N/A	no
Q6FMW9	RS22_CANGA	No assigned EC number	0.7846	1.0	1.0	yes	no
P0C0W1	RS22A_YEAST	No assigned EC number	0.7923	1.0	1.0	yes	no
Q6CW21	RS22_KLULA	No assigned EC number	0.7769	1.0	1.0	yes	no
Q8PV35	RS8_METMA	No assigned EC number	0.4769	1.0	1.0	yes	no
C3N5U2	RS8_SULIA	No assigned EC number	0.4887	1.0	0.9774	yes	no
A3MSJ6	RS8_PYRCJ	No assigned EC number	0.4846	1.0	1.0	yes	no
C3MVJ3	RS8_SULIM	No assigned EC number	0.4887	1.0	0.9774	yes	no
A0B9V5	RS8_METTP	No assigned EC number	0.4838	0.9538	0.9612	yes	no
P33095	RS15A_STRPU	No assigned EC number	0.7769	1.0	1.0	yes	no
P46792	RS22_AGABI	No assigned EC number	0.7307	1.0	1.0	N/A	no
P46793	RS15A_DICDI	No assigned EC number	0.7230	1.0	1.0	yes	no
P42798	R15A1_ARATH	No assigned EC number	0.9769	1.0	1.0	yes	no
O59432	RS8_PYRHO	No assigned EC number	0.4769	1.0	1.0	yes	no
P48149	RS15A_DROME	No assigned EC number	0.7846	1.0	1.0	yes	no
Q8U014	RS8_PYRFU	No assigned EC number	0.4923	1.0	1.0	yes	no
Q46GB0	RS8_METBF	No assigned EC number	0.4846	1.0	1.0	yes	no
Q752J5	RS22_ASHGO	No assigned EC number	0.7692	1.0	1.0	yes	no
Q9V1V0	RS8_PYRAB	No assigned EC number	0.4769	1.0	1.0	yes	no
Q975J5	RS8_SULTO	No assigned EC number	0.4661	1.0	0.9774	yes	no
Q5R938	RS15A_PONAB	No assigned EC number	0.7769	1.0	1.0	yes	no
Q0W1X3	RS8_UNCMA	No assigned EC number	0.4846	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
PLN00146	130	PLN00146, PLN00146, 40S ribosomal protein S15a; Pr	2e-92
PTZ00158	130	PTZ00158, PTZ00158, 40S ribosomal protein S15A; Pr	3e-88
PRK04034	130	PRK04034, rps8p, 30S ribosomal protein S8P; Review	1e-64
COG0096	132	COG0096, RpsH, Ribosomal protein S8 [Translation,	2e-47
pfam00410	129	pfam00410, Ribosomal_S8, Ribosomal protein S8	4e-37
PRK00136	130	PRK00136, rpsH, 30S ribosomal protein S8; Validate	1e-13
CHL00042	132	CHL00042, rps8, ribosomal protein S8	1e-06

>gnl|CDD|215075 PLN00146, PLN00146, 40S ribosomal protein S15a; Provisional

 Score =  262 bits (672), Expect = 2e-92
 Identities = 121/130 (93%), Positives = 125/130 (96%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVR SVLNDALK+MYNAEKRGKRQV+IRPSSKV+IKFL VMQKHGYIGEFE VDDHR+GK
Sbjct: 1   MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDV VKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

Length = 130

>gnl|CDD|185487 PTZ00158, PTZ00158, 40S ribosomal protein S15A; Provisional

 Score =  251 bits (644), Expect = 3e-88
 Identities = 100/130 (76%), Positives = 115/130 (88%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVR+SVL D L+S+ NAEK+GKRQV+IRPSSKV++KFL VMQKHGYIGEFE VDDHR+GK
Sbjct: 1   MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV LNGRLNKCGVISPRFDV + E E W   +LPSRQFG++VLTTS GIMDHEEARR++
Sbjct: 61  IVVNLNGRLNKCGVISPRFDVTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRH 120

Query: 121 VGGKVLGFFY 130
            GGK+LGFFY
Sbjct: 121 TGGKILGFFY 130

Length = 130

>gnl|CDD|179721 PRK04034, rps8p, 30S ribosomal protein S8P; Reviewed

 Score =  192 bits (490), Expect = 1e-64
 Identities = 69/130 (53%), Positives = 92/130 (70%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MV +  L +AL ++ NAE  GK++V+I+P+SK+I   L VMQ  GYIGEFEY+DD RAGK
Sbjct: 1   MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             VEL GR+NKCG I PR+ V   E E W  R LP+R FG ++++TS G+M H+EAR K 
Sbjct: 61  FKVELLGRINKCGAIKPRYPVKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKG 120

Query: 121 VGGKVLGFFY 130
           +GG +L + Y
Sbjct: 121 IGGVLLAYVY 130

Length = 130

>gnl|CDD|223174 COG0096, RpsH, Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

 Score =  148 bits (377), Expect = 2e-47
 Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 4/133 (3%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M+    L D L  + NAE+  K++V+  P+SK+    L V++K GYI +FE +DD R GK
Sbjct: 1   MMMTDPLADMLTRIRNAERA-KKEVVSMPASKLKGAILKVLKKEGYIKDFEVIDDGRKGK 59

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGW-TARLLPSRQ--FGYIVLTTSAGIMDHEEAR 117
           + V+L  R+N CGVISP   V    +  +   R LP+     G  +++TS G+M  +EAR
Sbjct: 60  LRVQLKYRINGCGVISPIKRVSKPGLRVYEKKRELPAVLNGLGIAIVSTSKGVMTDKEAR 119

Query: 118 RKNVGGKVLGFFY 130
           +K VGG+VL + +
Sbjct: 120 KKGVGGEVLCYVW 132

Length = 132

>gnl|CDD|215906 pfam00410, Ribosomal_S8, Ribosomal protein S8

 Score =  122 bits (309), Expect = 4e-37
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)

Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK-IVVEL 65
           + D L  + NA+   K  V+I P+SK+ I  L ++++ GYI  FE ++D R GK I V L
Sbjct: 3   IADMLTRIRNAQMAKKETVLI-PASKLKISILKILKEEGYIKGFEVIEDERNGKFIKVTL 61

Query: 66  ---------NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEA 116
                       + +      R  V  KE+     ++L     G  +L+TS G+M   EA
Sbjct: 62  KYDKNGKPVITGIKRISKPGLRVYVSYKELP----KVL--GGLGIAILSTSKGVMTDREA 115

Query: 117 RRKNVGGKVLGFFY 130
           R+K VGG+VL + +
Sbjct: 116 RKKGVGGEVLCYVW 129

Length = 129

>gnl|CDD|234658 PRK00136, rpsH, 30S ribosomal protein S8; Validated

 Score = 62.4 bits (153), Expect = 1e-13
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 25/124 (20%)

Query: 16  NAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL---------N 66
           NA+      V + P+SK+ +    ++++ GYI ++E  +D + G + + L          
Sbjct: 15  NAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLKYGEGEPVIE 73

Query: 67  G--RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGY--IVLTTSAGIMDHEEARRKNVG 122
           G  R++K G+   R      E+        P    G    +++TS G+M   EAR+  VG
Sbjct: 74  GIKRVSKPGL---RVYKKKDEL--------PKVLNGLGIAIVSTSKGVMTDREARKAGVG 122

Query: 123 GKVL 126
           G+VL
Sbjct: 123 GEVL 126

Length = 130

>gnl|CDD|214344 CHL00042, rps8, ribosomal protein S8

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 17/128 (13%)

Query: 9   DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGR 68
           D L  + NA    K  V I P++ +    + ++ + G+I       ++    +V+ L  R
Sbjct: 8   DMLTRIRNANMVKKGTVRI-PATNITENIVKILLREGFIENVREHRENNKYFLVLTLKYR 66

Query: 69  LNKCGV-------IS-P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
            NK          IS P  R     KEI     R+L     G ++L+TS GIM   EAR 
Sbjct: 67  GNKKKPYITTLKRISKPGLRIYSNYKEI----PRVLGG--MGIVILSTSKGIMTDREARL 120

Query: 119 KNVGGKVL 126
           K +GG++L
Sbjct: 121 KGIGGEIL 128

Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
PLN00146	130	40S ribosomal protein S15a; Provisional	100.0
COG0096	132	RpsH Ribosomal protein S8 [Translation, ribosomal	100.0
PTZ00158	130	40S ribosomal protein S15A; Provisional	100.0
PRK04034	130	rps8p 30S ribosomal protein S8P; Reviewed	100.0
CHL00042	132	rps8 ribosomal protein S8	100.0
PRK00136	130	rpsH 30S ribosomal protein S8; Validated	100.0
PF00410	129	Ribosomal_S8: Ribosomal protein S8; InterPro: IPR0	100.0
KOG1754	130	consensus 40S ribosomal protein S15/S22 [Translati	100.0

>PLN00146 40S ribosomal protein S15a; Provisional

Probab=100.00  E-value=7.4e-50  Score=287.99  Aligned_cols=130  Identities=93%  Similarity=1.400  Sum_probs=123.9

Q ss_pred             CcccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCccccccee
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFD   80 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRvy   80 (130)
                      |++||++|||||+||||+++++++|.++|+||++++|+++|++||||++|+..+++....++++|||..+++++|+||+|
T Consensus         1 m~~~~~iad~lt~IrNa~~a~~~~v~~~p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~~i~~~~~IS~Rvy   80 (130)
T PLN00146          1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD   80 (130)
T ss_pred             CCCcChHHHHHHHhHhHHHcCCCeEEEEcChHHHHHHHHHHHHCCCCcceEEEecCCcceEEEEEcccccCCcEEEcCEe
Confidence            99999999999999999999999997339999999999999999999999988776677899999998888999999999


Q ss_pred             cccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        81 ~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      ++.++|+++..+++|++|+|++|||||+|||||+||+++|+|||+||+||
T Consensus        81 ~~~~~l~~v~~~~~~~~g~Gi~IlSTskGimt~~eAr~~~vGGEvL~~vy  130 (130)
T PLN00146         81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
T ss_pred             cCcchhhHHHhccCCCCCCEEEEEECCCccccHHHHHHcCCCCEEEEEEC
Confidence            99999999988999999999999999999999999999999999999998

>COG0096 RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.2e-50  Score=286.91  Aligned_cols=124  Identities=42%  Similarity=0.677  Sum_probs=113.6

Q ss_pred             CcccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCccccccee
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFD   80 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRvy   80 (130)
                      |+++|+|||||||||||.++++..|.+ |+||+..+||++|++||||++|++.++++++.++|+|||+.+++|+|+    
T Consensus         1 m~~~DpiAdmltrIrNa~~~~~~~v~~-P~SKl~~~il~vLk~eGYI~~f~~~~~~~~~~~~v~Lky~~n~~~vI~----   75 (132)
T COG0096           1 MMMTDPLADMLTRIRNAERAKKEVVSM-PASKLKGAILKVLKKEGYIKDFEVIDDGRKGKLRVQLKYRINGCGVIS----   75 (132)
T ss_pred             CccccHHHHHHHHhHhHHHhccceeec-chHHHHHHHHHHHHHcCCcceEEEEeCCcceEEEEEEEeccCCCcccc----
Confidence            889999999999999999998888987 999999999999999999999999999999999999999988899999    


Q ss_pred             cccceeecccc------ccCCC--CcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           81 VGVKEIEGWTA------RLLPS--RQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        81 ~~~~~isk~~~------r~l~~--~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                       ..+.+|+|+.      +.||+  +|+|++|||||+|||||+|||++|+|||||||||
T Consensus        76 -~~~rVSkpg~rvy~~~~~LP~v~~g~Gi~IvSTs~GVMtd~eAr~~~vGGevLcyV~  132 (132)
T COG0096          76 -PIKRVSKPGLRVYEKKRELPAVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCYVW  132 (132)
T ss_pred             -cceecCCCCceeecChhhhhhhhcCceEEEEEcCCCccChHHHHHcCCCcEEEEEEC
Confidence             4555555543      33566  8899999999999999999999999999999999

>PTZ00158 40S ribosomal protein S15A; Provisional

Probab=100.00  E-value=2.9e-49  Score=284.52  Aligned_cols=130  Identities=77%  Similarity=1.242  Sum_probs=124.4

Q ss_pred             CcccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCccccccee
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFD   80 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRvy   80 (130)
                      |+.||++|||||+||||++++|++|.++|+||++++|+++|++||||++|++.+++....+.++|+.+.+++.+|+||+|
T Consensus         1 m~~~~~iadmlt~IrNa~~~~~~~V~v~p~Skl~~~il~IL~~eGyI~~~~~~~~~~~~~i~v~l~~rIsk~g~IS~RvY   80 (130)
T PTZ00158          1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD   80 (130)
T ss_pred             CCcccHHHHHHHhhhhHHhCCCCeEEEeCCcHHHHHHHHHHHHCCcccceEEEecCCEEEEEEEEcCccccCCCCccceE
Confidence            89999999999999999999999999669999999999999999999999988777667889999988888889999999


Q ss_pred             cccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        81 ~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      ++.++|+++..++||.+|+|++|||||+|||||+|||++++|||+||+||
T Consensus        81 ~~~~~ip~v~~~~lp~~glGi~IlSTSkGImt~~eAr~~~vGGEvLc~v~  130 (130)
T PTZ00158         81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY  130 (130)
T ss_pred             CCcchhhHHhcCCCccccceEEEEECCCCccChHHHHHcCCCceEEEEEC
Confidence            99999999998999999999999999999999999999999999999997

>PRK04034 rps8p 30S ribosomal protein S8P; Reviewed

Probab=100.00  E-value=3.1e-48  Score=279.56  Aligned_cols=129  Identities=53%  Similarity=0.926  Sum_probs=122.1

Q ss_pred             CcccchHHHHHHhhhhhhhhCcccee-ecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccccce
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVM-IRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRF   79 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~-~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRv   79 (130)
                      |+++|++|||||+||||++|++++|. + |+|+++++||++|++||||++|++.++++++.+.++|||..+++++|+||+
T Consensus         1 m~~~d~iad~lt~IrNa~~a~~~~v~~~-p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~~v~Lk~~~~~~~~IkPRv   79 (130)
T PRK04034          1 MVLLDPLANALSTIKNAEMVGKKEVIIK-PASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRY   79 (130)
T ss_pred             CCcccHHHHHHHHhHhHHHcCCceEEEE-cccHHHHHHHHHHHHCCCceEEEEEcCCCccceEEEECCccCCCCcCCCCe
Confidence            77789999999999999999999985 6 999999999999999999999998776667789999999877789999999


Q ss_pred             ecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           80 DVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        80 y~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      |++.++|+++..+++|++|+|++|||||+|||||+||+++++|||+||+||
T Consensus        80 y~~~~~l~~~~~~~l~~~~lGi~IlSTskGImt~~eA~~~~vGGEvL~~v~  130 (130)
T PRK04034         80 PVKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGIGGVLLAYVY  130 (130)
T ss_pred             EcCHhHhHHHHhccCCCCCceEEEEECCCCceeHHHHHHcCCCCEEEEEEC
Confidence            999999999888899999999999999999999999999999999999999

>CHL00042 rps8 ribosomal protein S8

Probab=100.00  E-value=4.2e-45  Score=263.89  Aligned_cols=121  Identities=29%  Similarity=0.438  Sum_probs=106.6

Q ss_pred             ccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccC-CCcccc-----
Q 032911            3 RVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN-KCGVIS-----   76 (130)
Q Consensus         3 ~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~-~~~~I~-----   76 (130)
                      ++|++|||||+||||++|++.+|.+ |+|+++++||++|++||||++|++.+++.++.++|+|||+.+ ..|+|+     
T Consensus         2 ~~d~iad~lt~IrNa~~a~~~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~~~~pvi~~i~~i   80 (132)
T CHL00042          2 GNDTIADMLTRIRNANMVKKGTVRI-PATNITENIVKILLREGFIENVREHRENNKYFLVLTLKYRGNKKKPYITTLKRI   80 (132)
T ss_pred             CcchHHHHHHHhHHHHHCCCCEEEE-eccHHHHHHHHHHHHCCcccceEEEecCCeeEEEEEEEeecCCCceeccccEEE
Confidence            4799999999999999999999999 999999999999999999999999877777889999999853 258886     


Q ss_pred             --c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           77 --P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        77 --p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                        |  |+|++.++++++.      +|+|++|||||+|||||+||+++++|||+||+||
T Consensus        81 SkPg~Rvy~~~~~L~~~~------~g~G~~IlSTskGimt~~eA~~~~iGGe~L~~v~  132 (132)
T CHL00042         81 SKPGLRIYSNYKEIPRVL------GGMGIVILSTSKGIMTDREARLKGIGGEILCYIW  132 (132)
T ss_pred             cCCCceeEcCHhHHHHHh------CCCcEEEEECCCCcccHHHHHHcCCCCEEEEEEC
Confidence              4  5555555553332      8999999999999999999999999999999999

>PRK00136 rpsH 30S ribosomal protein S8; Validated

Probab=100.00  E-value=5.4e-44  Score=257.43  Aligned_cols=121  Identities=27%  Similarity=0.469  Sum_probs=107.4

Q ss_pred             CcccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccc----
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVIS----   76 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~----   76 (130)
                      |+ +|+++||||+||||+++++.+|.+ |+|+++.+||++|++||||++|+..+++++.+++|+|||+.+ +|+|+    
T Consensus         1 m~-~d~i~d~lt~IrNa~~~~~~~v~i-p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~~v~Lky~~~-~pvi~~i~~   77 (130)
T PRK00136          1 SM-TDPIADMLTRIRNAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLKYGEG-EPVIEGIKR   77 (130)
T ss_pred             CC-cChHHHHHHHHHHHHHcCCCeEEe-cccHHHHHHHHHHHHCCcccceEEEecCCcceEEEEEecCCC-CcccccceE
Confidence            54 599999999999999999999998 999999999999999999999998876556679999999865 69986    


Q ss_pred             ---c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           77 ---P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        77 ---p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                         |  |+|++.++|+++.      +|+|++|+|||+|||||+||+++++|||+||+||
T Consensus        78 ISkPg~Riy~~~~~l~~~~------~g~G~~IlSTs~Gimt~~eA~~~~iGGeiL~~v~  130 (130)
T PRK00136         78 VSKPGLRVYKKKDELPKVL------NGLGIAIVSTSKGVMTDREARKAGVGGEVLCYVW  130 (130)
T ss_pred             ecCCCcceEcCHhHHHHHH------CCCCEEEEEcCCCeeeHHHHHHhCCCCEEEEEEC
Confidence               4  5666655554443      8999999999999999999999999999999999

>PF00410 Ribosomal_S8: Ribosomal protein S8; InterPro: IPR000630 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.4e-43  Score=252.64  Aligned_cols=119  Identities=42%  Similarity=0.656  Sum_probs=107.4

Q ss_pred             chHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCcc-ceEEEEEcCccCCCcccc-------
Q 032911            5 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRA-GKIVVELNGRLNKCGVIS-------   76 (130)
Q Consensus         5 ~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~i~Lky~~~~~~~I~-------   76 (130)
                      |++||||++||||+++++++|.+ |+|++++++|++|++||||++|++.++++. ++++|+|||..++.|+|+       
T Consensus         1 D~lad~l~~I~Na~~~~~~~v~i-p~sk~~~~il~iL~~eGyI~~f~~~~~~~~~~~i~I~Lky~~~~~~~i~~i~~iSk   79 (129)
T PF00410_consen    1 DPLADLLTRIRNASRARKRFVII-PYSKLNLSILKILKKEGYISGFEIIDDNRNGKRIWIELKYRRNGKPVIKKIKRISK   79 (129)
T ss_dssp             SHHHHHHHHHHHHHHTTCSEEEE-EHCHHHHHHHHHHHHTTSEEEEEEEESSSSEEEEEEEESBCSSSSBSSSEEEESSB
T ss_pred             CcHHHHHHHhHHHHHCCCCEEEe-cccHHHHHHHHHHhhccccceeEeeccCCCceEEEEEEccccccchhhhhhhcccC
Confidence            79999999999999999999999 999999999999999999999999887764 679999999545568875       


Q ss_pred             c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           77 P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        77 p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      |  |+|++.+++++..      +|+|++|+|||+|||||+||+++++|||+||+||
T Consensus        80 p~~r~y~~~~~L~~~~------~g~g~~IlSTskGImt~~eA~~~~vGGevL~~V~  129 (129)
T PF00410_consen   80 PGRRVYISYKELPKVK------NGLGILILSTSKGIMTHREARKLNVGGEVLCYVW  129 (129)
T ss_dssp             TTCCCEESGTGSHHSC------TTTSEEEEEETTEEEEHHHHHHHTSEEEEEEEEE
T ss_pred             CCcceecCHHHHHHHh------CCCeEEEEEcCCCcEeHHHHHHcCCCCEEEEEEC
Confidence            4  7777777776533      8999999999999999999999999999999999

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S8 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S8 is known to bind directly to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups eubacterial, algal and plant chloroplast, cyanelle, archaebacterial and Marchantia polymorpha mitochondrial S8; mammalian and plant S15A; and yeast S22 (S24) ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_H 3O30_O 3O2Z_O 3IZB_H 3U5G_W 3U5C_W 3OTO_H 1AN7_A 2HGR_K 3BBN_H ....

>KOG1754 consensus 40S ribosomal protein S15/S22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-38  Score=224.75  Aligned_cols=130  Identities=84%  Similarity=1.317  Sum_probs=128.4

Q ss_pred             CcccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCccccccee
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFD   80 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRvy   80 (130)
                      |++++.|||+|..|+||.+++|++|.+.|.|+....+|.+|.+||||.+|++.++++.+++.|.|..+.|+|++|+||+-
T Consensus         1 m~~~~vLaDalksinNA~krGK~qvlirp~Skvii~FL~vmmkhGyIg~fei~ddhragkivv~L~gRlNkcg~Isprfd   80 (130)
T KOG1754|consen    1 MVRMNVLADALKSINNAEKRGKRQVLIRPSSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD   80 (130)
T ss_pred             CchHHHHHHHHHHhhhHHhcCCceEEecccHHHHHHHHHHHHHcCcccceEEecCCccceEEEecccccccccccccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        81 ~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      ++.+++++|..+.+|+.++|+.+++||.|+|+|+||+.+++|||+||++|
T Consensus        81 V~lkdlek~~n~llpsrqfg~ivltts~Gimdh~ear~k~~gg~ilg~~~  130 (130)
T KOG1754|consen   81 VKLKDLEKWTNSLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKILGFFY  130 (130)
T ss_pred             cccchHHHHHhccCccceeeEEEEecccccccHHHHhHhhcCcccceeeC
Confidence            99999999999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
3iz6_H	130	Localization Of The Small Subunit Ribosomal Protein		4e-70
3izb_H	130	Localization Of The Small Subunit Ribosomal Protein		6e-59
1s1h_H	129	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		3e-58
2zkq_h	130	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-58
3jyv_H	125	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-57
3zey_J	130	High-resolution Cryo-electron Microscopy Structure		1e-53
2xzm_H	130	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-48
3j20_I	130	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-33
1i6u_A	130	Rna-Protein Interactions: The Crystal Structure Of		7e-29
1sei_A	130	Structure Of 30s Ribosomal Protein S8 Length = 130		9e-06
1vs5_H	130	Crystal Structure Of The Bacterial Ribosome From Es		3e-04
1p6g_H	129	Real Space Refined Coordinates Of The 30s Subunit F		3e-04
2gy9_H	127	Structure Of The 30s Subunit Of A Pre-Translocation		3e-04

>pdb|3IZ6|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 130

Iteration: 1
 Score =  259 bits (661), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 124/130 (95%), Positives = 129/130 (99%)
Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVRVSVLNDALK+MYNAEKRGKRQV+IRPSSKVIIKFL+VMQKHGYIGEFE+VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 121 VGGKVLGFFY 130
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

>pdb|3IZB|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 130

Iteration: 1
 Score =  221 bits (564), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 117/130 (90%)
Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct: 1   MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60
Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct: 61  IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120
Query: 121 VGGKVLGFFY 130
           V GK+LGF Y
Sbjct: 121 VSGKILGFVY 130

>pdb|1S1H|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 129

Iteration: 1
 Score =  219 bits (558), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/129 (79%), Positives = 116/129 (89%)
Query: 2   VRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKI 61
            R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKI
Sbjct: 1   TRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKI 60
Query: 62  VVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121
           VV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V
Sbjct: 61  VVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHV 120
Query: 122 GGKVLGFFY 130
            GK+LGF Y
Sbjct: 121 SGKILGFVY 129

>pdb|2ZKQ|HH Chain h, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 130

Iteration: 1
 Score =  218 bits (554), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 116/130 (89%)
Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGK
Sbjct: 1   MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+
Sbjct: 61  IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120
Query: 121 VGGKVLGFFY 130
            GGK+LGFF+
Sbjct: 121 TGGKILGFFF 130

>pdb|3JYV|H Chain H, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 125

Iteration: 1
 Score =  214 bits (546), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 99/125 (79%), Positives = 114/125 (91%)
Query: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL 65
           +L DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+L
Sbjct: 1   LLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQL 60
Query: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125
           NGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+
Sbjct: 61  NGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKI 120
Query: 126 LGFFY 130
           LGF Y
Sbjct: 121 LGFVY 125

>pdb|3ZEY|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 130

Iteration: 1
 Score =  204 bits (519), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 108/130 (83%)
Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M  +SVL +AL+ +  AE+RGKRQV+IRPSSKV++KFL VMQKHGYIGEFE VDDHRAGK
Sbjct: 1   MTMMSVLANALRCIAGAERRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGK 60
Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV LNGRLNKCG I PRFD   ++ E W   +LPSRQFG++VLTTS GIMDHEEAR +N
Sbjct: 61  IVVNLNGRLNKCGAICPRFDCTARDFEKWVKNILPSRQFGFVVLTTSLGIMDHEEARARN 120
Query: 121 VGGKVLGFFY 130
            GGKVLGFFY
Sbjct: 121 TGGKVLGFFY 130

>pdb|2XZM|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 130

Iteration: 1
 Score =  185 bits (470), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 109/130 (83%)
Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MV+V++L + LK + NAEK GK+QV++RP SKV++KFL +MQK+GYIGEFE +DDHR+ K
Sbjct: 1   MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKK 60
Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           +VVEL GR+NKCGVISPR+DV + + E WT  +LPSRQFG +VLTT+ GI+ HEE R+++
Sbjct: 61  VVVELIGRINKCGVISPRYDVPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRH 120
Query: 121 VGGKVLGFFY 130
            GGK+LGFFY
Sbjct: 121 TGGKILGFFY 130

>pdb|3J20|I Chain I, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 130

Iteration: 1
 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 92/130 (70%)
Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M  +  L +AL  + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD RAG 
Sbjct: 1   MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             V+L GR+NK G I PRF V V E E W  R LP+ +FG ++++TS G+M H+EA  K 
Sbjct: 61  YRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKG 120
Query: 121 VGGKVLGFFY 130
           +GG+++ + Y
Sbjct: 121 IGGRLIAYVY 130

>pdb|1I6U|A Chain A, Rna-Protein Interactions: The Crystal Structure Of Ribosomal Protein S8RRNA COMPLEX FROM METHANOCOCCUS Jannaschii Length = 130

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 88/130 (67%)
Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M  +  L +AL  + N E+ GK+ V I+P+SK+I + L V Q +GYIGEFE+++D RAG 
Sbjct: 1   MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVXQDNGYIGEFEFIEDGRAGI 60
Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             VEL G++NKCG I PRF V     E +  R LP+R FG ++++T+ G+  HEEA+++ 
Sbjct: 61  FKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVXSHEEAKKRG 120
Query: 121 VGGKVLGFFY 130
           +GG++L + Y
Sbjct: 121 LGGRLLAYVY 130

>pdb|1SEI|A Chain A, Structure Of 30s Ribosomal Protein S8 Length = 130

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 23/137 (16%)
Query: 6   VLNDALKSMYNAEKRGKRQVMIR------PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAG 59
           V+ D +  M  A +      M+R      P+SK+  +   ++++ G+I ++EY++D++ G
Sbjct: 1   VMTDPIADMLTAIRNAN---MVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQG 57
Query: 60  KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARL------LPS--RQFGYIVLTTSAGIM 111
            + + L    N+      R   G+K I     R+      +P      G  +L+TS G++
Sbjct: 58  ILRIFLKYGPNE------RVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVL 111
Query: 112 DHEEARRKNVGGKVLGF 128
             +EAR+K  GG+++ +
Sbjct: 112 TDKEARQKGTGGEIIAY 128

>pdb|1VS5|H Chain H, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 130

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 22/133 (16%)
Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRA-------- 58
           + D L  + N +   K  V + PSSK+ +    V+++ G+I +F+   D +         
Sbjct: 7   IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKY 65
Query: 59  --GKIVVELNGRLNKCGV-ISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEE 115
             GK VVE   R+++ G+ I  R D   K + G           G  V++TS G+M    
Sbjct: 66  FQGKAVVESIQRVSRPGLRIYKRKDELPKVMAG----------LGIAVVSTSKGVMTDRA 115
Query: 116 ARRKNVGGKVLGF 128
           AR+  +GG+++ +
Sbjct: 116 ARQAGLGGEIICY 128

>pdb|1P6G|H Chain H, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 129

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 22/133 (16%)
Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRA-------- 58
           + D L  + N +   K  V + PSSK+ +    V+++ G+I +F+   D +         
Sbjct: 6   IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKY 64
Query: 59  --GKIVVELNGRLNKCGV-ISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEE 115
             GK VVE   R+++ G+ I  R D   K + G           G  V++TS G+M    
Sbjct: 65  FQGKAVVESIQRVSRPGLRIYKRKDELPKVMAG----------LGIAVVSTSKGVMTDRA 114
Query: 116 ARRKNVGGKVLGF 128
           AR+  +GG+++ +
Sbjct: 115 ARQAGLGGEIICY 127

>pdb|2GY9|H Chain H, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 127

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 22/133 (16%)
Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRA-------- 58
           + D L  + N +   K  V + PSSK+ +    V+++ G+I +F+   D +         
Sbjct: 5   IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKY 63
Query: 59  --GKIVVELNGRLNKCGV-ISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEE 115
             GK VVE   R+++ G+ I  R D   K + G           G  V++TS G+M    
Sbjct: 64  FQGKAVVESIQRVSRPGLRIYKRKDELPKVMAG----------LGIAVVSTSKGVMTDRA 113
Query: 116 ARRKNVGGKVLGF 128
           AR+  +GG+++ +
Sbjct: 114 ARQAGLGGEIICY 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
3u5c_W	130	40S ribosomal protein S22-A; translation, ribosome	1e-64
1i6u_A	130	30S ribosomal protein S8P; protein-RNA interaction	3e-63
2xzm_H	130	Ribosomal protein S8 containing protein; ribosome,	7e-62
3bbn_H	134	Ribosomal protein S8; small ribosomal subunit, spi	3e-12
1sei_A	130	Ribosomal protein S8; prokaryotic, rRNA-binding; 1	8e-12
2vqe_H	138	30S ribosomal protein S8, 30S ribosomal protein S6	2e-11
1s03_H	129	30S ribosomal protein S8; protein-RNA complex, SPC	4e-11
3rf2_A	168	30S ribosomal protein S8; RNA-binding protein, hyp	6e-08

>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h Length = 130

 Score =  191 bits (488), Expect = 1e-64
 Identities = 103/130 (79%), Positives = 117/130 (90%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GK
Sbjct: 1   MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           IVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct: 61  IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120

Query: 121 VGGKVLGFFY 130
           V GK+LGF Y
Sbjct: 121 VSGKILGFVY 130

>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1 Length = 130

 Score =  188 bits (479), Expect = 3e-63
 Identities = 60/130 (46%), Positives = 90/130 (69%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           M  +  L +AL  + N E+ GK+ V I+P+SK+I + L VMQ +GYIGEFE+++D RAG 
Sbjct: 1   MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGI 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
             VEL G++NKCG I PRF V     E +  R LP+R FG ++++T+ G+M HEEA+++ 
Sbjct: 61  FKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRG 120

Query: 121 VGGKVLGFFY 130
           +GG++L + Y
Sbjct: 121 LGGRLLAYVY 130

>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H Length = 130

 Score =  184 bits (470), Expect = 7e-62
 Identities = 82/130 (63%), Positives = 109/130 (83%)

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
           MV+V++L + LK + NAEK GK+QV++RP SKV++KFL +MQK+GYIGEFE +DDHR+ K
Sbjct: 1   MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
           +VVEL GR+NKCGVISPR+DV + + E WT  +LPSRQFG +VLTT+ GI+ HEE R+++
Sbjct: 61  VVVELIGRINKCGVISPRYDVPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRH 120

Query: 121 VGGKVLGFFY 130
            GGK+LGFFY
Sbjct: 121 TGGKILGFFY 130

>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 134

 Score = 58.3 bits (142), Expect = 3e-12
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 23/125 (18%)

Query: 16  NAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELN-GRLNKCGV 74
           NA+   K  V I  S+ +    + ++ + G+I       +     +V+ L   R  K   
Sbjct: 15  NADMNRKGTVRI-VSTNITENIVKILLREGFIENARKHQERNKYFLVLTLRHRRNKKGPY 73

Query: 75  ISP-----------RFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARRKNV 121
           ++            R     + I        P      G  +L+TS GIM   EAR + +
Sbjct: 74  LNTFHLKRVSRPGLRIYSNYQRI--------PRILGGMGIAILSTSRGIMTDREARLEGI 125

Query: 122 GGKVL 126
           GG++L
Sbjct: 126 GGEIL 130

>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1 Length = 130

 Score = 57.1 bits (139), Expect = 8e-12
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 25/124 (20%)

Query: 16  NAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL---NG----- 67
           NA      ++ + P+SK+  +   ++++ G+I ++EY++D++ G + + L          
Sbjct: 15  NANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPNERVIT 73

Query: 68  ---RLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARRKNVG 122
              R++K G+   R  V   E+        P      G  +L+TS G++  +EAR+K  G
Sbjct: 74  GLKRISKPGL---RVYVKAHEV--------PRVLNGLGIAILSTSQGVLTDKEARQKGTG 122

Query: 123 GKVL 126
           G+++
Sbjct: 123 GEII 126

>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ... Length = 138

 Score = 56.4 bits (137), Expect = 2e-11
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 27/129 (20%)

Query: 16  NAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL-------NGR 68
           NA +  K    + P+S+   + L ++ + G+I  +E VD      + V L          
Sbjct: 15  NATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPD 73

Query: 69  LNKCGVIS-------P--RFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEAR 117
                VI        P  R  VGVKEI        P  +   G  +L+TS G++   EAR
Sbjct: 74  PRPEQVIHHIRRISKPGRRVYVGVKEI--------PRVRRGLGIAILSTSKGVLTDREAR 125

Query: 118 RKNVGGKVL 126
           +  VGG+++
Sbjct: 126 KLGVGGELI 134

>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ... Length = 129

 Score = 55.5 bits (135), Expect = 4e-11
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 26/124 (20%)

Query: 16  NAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL---NG----- 67
           N +   K  V + PSSK+ +    V+++ G+I +F+   D +  ++ + L    G     
Sbjct: 15  NGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTK-PELELTLKYFQGKAVVE 72

Query: 68  ---RLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARRKNVG 122
              R+++ G+   R      E+        P      G  V++TS G+M    AR+  +G
Sbjct: 73  SIQRVSRPGL---RIYKRKDEL--------PKVMAGLGIAVVSTSKGVMTDRAARQAGLG 121

Query: 123 GKVL 126
           G+++
Sbjct: 122 GEII 125

>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus} Length = 168

 Score = 47.5 bits (113), Expect = 6e-08
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 40/150 (26%)

Query: 16  NAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVI 75
           NA  R    + + PSSK+  + L V++K G+I ++E +   +  +   ++     K    
Sbjct: 16  NAIMRRDDFLYV-PSSKLKERILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSPNP 74

Query: 76  SPRFDVGVKEIEGWTARLL-------------------------PSRQ------------ 98
             +  +   E      +                             R+            
Sbjct: 75  KMKRYLKQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGGRRVYAGVRTMPYVK 134

Query: 99  --FGYIVLTTSAGIMDHEEARRKNVGGKVL 126
              G  +++T AG+M   EARR   GG+V+
Sbjct: 135 RGLGIAIVSTDAGVMTDHEARRMRKGGEVI 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
3u5c_W	130	40S ribosomal protein S22-A; translation, ribosome	100.0
1i6u_A	130	30S ribosomal protein S8P; protein-RNA interaction	100.0
2xzm_H	130	Ribosomal protein S8 containing protein; ribosome,	100.0
1sei_A	130	Ribosomal protein S8; prokaryotic, rRNA-binding; 1	100.0
2vqe_H	138	30S ribosomal protein S8, 30S ribosomal protein S6	100.0
3bbn_H	134	Ribosomal protein S8; small ribosomal subunit, spi	100.0
1s03_H	129	30S ribosomal protein S8; protein-RNA complex, SPC	100.0
3rf2_A	168	30S ribosomal protein S8; RNA-binding protein, hyp	100.0

>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h

Probab=100.00  E-value=2.2e-52  Score=300.08  Aligned_cols=130  Identities=79%  Similarity=1.274  Sum_probs=125.6

Q ss_pred             CcccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCccccccee
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFD   80 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRvy   80 (130)
                      |+.||+||||||+||||.+++|++|.++|+||++.+|+++|++||||++|++.++++++++||+|||+.+++++|+||+|
T Consensus         1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~r~~k~~~ISpR~y   80 (130)
T 3u5c_W            1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFN   80 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCB
T ss_pred             CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeeccCCCceEEEEEccccCCCCeEEccee
Confidence            89999999999999999999999998779999999999999999999999999998899999999999999999999999


Q ss_pred             cccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        81 ~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      ++.+|+++|..+.+|..|+|++|||||+|||||+|||++++|||+|||||
T Consensus        81 ~~~~el~kv~~g~lp~~~~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~  130 (130)
T 3u5c_W           81 VKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY  130 (130)
T ss_dssp             CCSSHHHHHHHHHCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             cCHHHhHHHHcCCCCCCCceEEEEEcCCCceeHHHHHHhCCCCEEEEEEC
Confidence            99999999987889999999999999999999999999999999999998

>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1

Probab=100.00  E-value=3e-52  Score=299.43  Aligned_cols=130  Identities=46%  Similarity=0.859  Sum_probs=125.3

Q ss_pred             CcccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCccccccee
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFD   80 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRvy   80 (130)
                      |+++|++|||||+||||++++|.+|.+.|+||++.+|+++|++||||++|++.+++.+++|+|+|||..+++.+||||+|
T Consensus         1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y   80 (130)
T 1i6u_A            1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFP   80 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCE
T ss_pred             CCccCHHHHHHHHhHHHHHcCCCEEEEECchHHHHHHHHHHHHCCccccEEEEecCCceEEEEEEeeecccCCEEECCee
Confidence            88889999999999999999999999779999999999999999999999998888788999999999999999999999


Q ss_pred             cccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        81 ~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      ++.+++++|..+.+|++|+|++|||||+|||||+|||++++|||+||+||
T Consensus        81 ~~~~~l~kv~~~~lp~~g~G~~IlSTs~Gimt~~eAr~~~vGGevL~~v~  130 (130)
T 1i6u_A           81 VKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY  130 (130)
T ss_dssp             ECTTCCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             cChhhhHHHHhccCCCCCceEEEEECCcCceeHHHHHHcCCCCEEEEEEC
Confidence            99999999988999999999999999999999999999999999999999

>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H

Probab=100.00  E-value=2.7e-52  Score=299.66  Aligned_cols=130  Identities=63%  Similarity=1.126  Sum_probs=125.4

Q ss_pred             CcccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCccccccee
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFD   80 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRvy   80 (130)
                      |+++|++|||||+||||++++|.+|.+.|+||++.+|+++|++||||++|++.+++.+++|+|+|||..+++.+||||+|
T Consensus         1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y   80 (130)
T 2xzm_H            1 MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVELIGRINKCGVISPRYD   80 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHTSSCCEEEECCSSSCEEEEECCSCCCCEEECTTCCB
T ss_pred             CCccCHHHHHHHHhHHHHHcCCCEEEEEcchHHHHHHHHHHHHCCCcceEEEEecCCceEEEEEEecccccCcEEECcee
Confidence            88889999999999999999999999779999999999999999999999998888788999999999999999999999


Q ss_pred             cccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        81 ~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      ++.+++++|..+++|++|+|++|||||+|||||+|||++++|||+||+||
T Consensus        81 ~~~~~l~kv~~~~lp~~g~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~  130 (130)
T 2xzm_H           81 VPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRHTGGKILGFFY  130 (130)
T ss_dssp             CCGGGHHHHHHHHSSSTTCCCCCEECSSCEECTTHHHHTTCCCEECEEEC
T ss_pred             CCHHHhHHHHhccCCCCCceEEEEECCccceeHHHHHHcCCCCEEEEEEC
Confidence            99999999988999999999999999999999999999999999999999

>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1

Probab=100.00  E-value=1.7e-48  Score=279.85  Aligned_cols=121  Identities=27%  Similarity=0.523  Sum_probs=111.8

Q ss_pred             cccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccc-----
Q 032911            2 VRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVIS-----   76 (130)
Q Consensus         2 ~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~-----   76 (130)
                      +++|++|||||+||||++++|.+|.+ |+||++.+|+++|++||||++|++.++++++.|+|+|||+.+ +|+|+     
T Consensus         1 ~~~d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~-~~vI~~i~rI   78 (130)
T 1sei_A            1 VMTDPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPN-ERVITGLKRI   78 (130)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSS-SBSCCCEEEC
T ss_pred             CccChHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHHCCCceeEEEEecCCccEEEEEEecCCC-CcceeeeEEE
Confidence            35799999999999999999999998 999999999999999999999999888878899999999876 69886     


Q ss_pred             --c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           77 --P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        77 --p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                        |  |+|++.++|++|.      +|+|++|||||+|||||+|||++++|||+||+||
T Consensus        79 SkPg~R~y~~~~~l~~v~------~g~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~  130 (130)
T 1sei_A           79 SKPGLRVYVKAHEVPRVL------NGLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI  130 (130)
T ss_dssp             CBTTBCCEECGGGCCCCC------TTSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             cCCCCeeEcCHHHHHHHh------CCCeEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence              5  7777777776654      8999999999999999999999999999999999

>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...

Probab=100.00  E-value=1.2e-48  Score=282.98  Aligned_cols=122  Identities=30%  Similarity=0.446  Sum_probs=111.6

Q ss_pred             cccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCC-------Ccc
Q 032911            2 VRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNK-------CGV   74 (130)
Q Consensus         2 ~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~-------~~~   74 (130)
                      +++|++|||||+||||++++|.+|.+ |+|+++.+|+++|++||||++|++.+++.++.|+|+|||+.++       +|+
T Consensus         1 m~~d~iad~ltrIrNA~~~~k~~V~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~~~~~~~~~~~v   79 (138)
T 2vqe_H            1 MLTDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQV   79 (138)
T ss_dssp             CCSCHHHHHHHHHHHHHHTTCSCCCC-BCCHHHHHHHHHHHHTTSSSEEEEEEETTEEEEEEECCBCCCCSSSCCCCCBS
T ss_pred             CccchHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHHcCcceeEEEEecCCceEEEEEEecCcCCccccccCCcc
Confidence            14799999999999999999999998 9999999999999999999999988877778999999996566       899


Q ss_pred             cc-------c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           75 IS-------P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        75 I~-------p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      |+       |  |+|++.++|++|.      +|+|++|||||+|||||+|||++++|||+||+||
T Consensus        80 I~~ikriSkPg~Riy~~~~~lpkv~------~g~Gi~IlSTskGimt~~eAr~~~vGGEvLc~v~  138 (138)
T 2vqe_H           80 IHHIRRISKPGRRVYVGVKEIPRVR------RGLGIAILSTSKGVLTDREARKLGVGGELICEVW  138 (138)
T ss_dssp             CSCEEECSBTTBCCEECGGGCCCGG------GGTSEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             ccccEEecCCCcceEeCHHHHHHHh------CCceEEEEECCCCceeHHHHHHcCCCCEEEEEEC
Confidence            97       5  7777777776554      8999999999999999999999999999999999

>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=5e-48  Score=278.59  Aligned_cols=119  Identities=23%  Similarity=0.360  Sum_probs=110.6

Q ss_pred             ccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeC-CccceEEEEEcCccCCCcccc-----
Q 032911            3 RVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDD-HRAGKIVVELNGRLNKCGVIS-----   76 (130)
Q Consensus         3 ~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~-~~~~~i~i~Lky~~~~~~~I~-----   76 (130)
                      ++|++|||||+||||++++|.+|.+ |+||++.+|+++|++||||++|++.++ +. +.|+|+||| .+++|+|+     
T Consensus         2 ~~d~iad~lt~IrNA~~~~k~~V~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~v~Lky-~~~~~vI~p~~~~   78 (134)
T 3bbn_H            2 GKDTIADIITCIRNADMNRKGTVRI-VSTNITENIVKILLREGFIENARKHQERNK-YFLVLTLRH-RRNKKGPYLNTFH   78 (134)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHTHHHHTTTSSSCEEEEESSSC-EEEEEECCB-CCCSSSCCBSCSC
T ss_pred             cccHHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHHCCcceeEEEEecCCC-cEEEEEEec-CCCCceeeccccc
Confidence            4799999999999999999999998 999999999999999999999998887 76 899999999 45679998     


Q ss_pred             ------c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           77 ------P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        77 ------p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                            |  |+|++.+++++|.      +|+|++|||||+|||||+|||++++|||+||+||
T Consensus        79 ikriSkPg~Riy~~~~~lpkv~------~g~Gi~IlSTskGimt~~eAr~~~vGGevLc~v~  134 (134)
T 3bbn_H           79 LKRVSRPGLRIYSNYQRIPRIL------GGMGIAILSTSRGIMTDREARLEGIGGEILCYIW  134 (134)
T ss_dssp             EEESSBTTBCCEECSSSCCCGG------GTTSEEEEEESSSEECTTHHHHHTCCEEEEEEEC
T ss_pred             cEEecCCCcceEcCHHHHHHHh------CCceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence                  4  8888888887664      8999999999999999999999999999999999

>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...

Probab=100.00  E-value=1.4e-47  Score=274.75  Aligned_cols=119  Identities=24%  Similarity=0.409  Sum_probs=108.7

Q ss_pred             ccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccc------
Q 032911            3 RVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVIS------   76 (130)
Q Consensus         3 ~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~------   76 (130)
                      ++|++|||||+||||++++|.+|.+ |+||++.+|+++|++||||++|++ +++.++.|+|+|||. +++|+|+      
T Consensus         2 ~~d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~eGyI~~~~~-~~~~~~~i~v~Lky~-~~~~vI~~i~rIS   78 (129)
T 1s03_H            2 MQDPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKV-EGDTKPELELTLKYF-QGKAVVESIQRVS   78 (129)
T ss_dssp             -CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEE-ECSSSCEEEEEECBS-SSSBSCSCEEECS
T ss_pred             CcChHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHHCCcceeEEE-cCCCceEEEEEEecC-CCCcccccceEEc
Confidence            4799999999999999999999998 999999999999999999999998 667678999999994 5579886      


Q ss_pred             -c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           77 -P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        77 -p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                       |  |+|++.++|++|.      +|+|++|||||+|||||+|||++++|||+||+||
T Consensus        79 kPg~R~y~~~~~l~kv~------~g~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~  129 (129)
T 1s03_H           79 RPGLRIYKRKDELPKVM------AGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA  129 (129)
T ss_dssp             BTTBCCEECGGGSCCSC------SSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             CCCcceEcCHHHHHHHh------CCceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence             5  7777777776664      8999999999999999999999999999999998

>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}

Probab=100.00  E-value=1.9e-47  Score=284.16  Aligned_cols=123  Identities=29%  Similarity=0.444  Sum_probs=109.7

Q ss_pred             CcccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCC------------------------
Q 032911            1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDH------------------------   56 (130)
Q Consensus         1 m~~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~------------------------   56 (130)
                      |++||+|||||||||||+++++.+|.+ |+|+++.+|+++|++||||++|++.+++                        
T Consensus         1 m~~~d~iad~lt~IrNA~~ar~~~v~i-P~Skl~~~i~~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   79 (168)
T 3rf2_A            1 MSAVDPIADMFSAIKNAIMRRDDFLYV-PSSKLKERILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSPNPKMKRY   79 (168)
T ss_dssp             ---CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHHTSEEEEEECCHHHHHHHHHHHHHHHHSSCCSSSHHH
T ss_pred             CCcccHHHHHHHHHHHHHHcCCCEEEe-cccHHHHHHHHHHHHCCCccceEEecCCccccccccccccccCCCccccccc
Confidence            889999999999999999999999998 9999999999999999999999998765                        


Q ss_pred             ----------ccceEEEEEcCccC--CCcccc-------c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHH
Q 032911           57 ----------RAGKIVVELNGRLN--KCGVIS-------P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEE  115 (130)
Q Consensus        57 ----------~~~~i~i~Lky~~~--~~~~I~-------p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~e  115 (130)
                                .+++|||+|||+++  ++|+|+       |  |+|++.++++++.      +|+|++|||||+|||||+|
T Consensus        80 ~~~~t~~n~~~~~~l~v~LKY~~~~~k~pvI~~lkrISKPg~Riy~~~~eLprv~------~GlGi~IlSTskGImt~rE  153 (168)
T 3rf2_A           80 LKQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGGRRVYAGVRTMPYVK------RGLGIAIVSTDAGVMTDHE  153 (168)
T ss_dssp             HHHHHHTTSTTCCEEEEEECBSSTTSCSBSCSCEEECSCSSSCCEECSTTCCCSG------GGTSEEEEEETTEEEEHHH
T ss_pred             ccccccccccccceEEEEEEeecCCCCCccccccEEecCCCceEEcCHHHHHHHH------cCCcEEEEEcCCcceeHHH
Confidence                      57899999999643  479994       6  7777777776554      8999999999999999999


Q ss_pred             HHHcCCCcEEEEEEC
Q 032911          116 ARRKNVGGKVLGFFY  130 (130)
Q Consensus       116 Ar~~~lGGevLc~V~  130 (130)
                      ||++++|||+||+||
T Consensus       154 Ar~~~vGGevLc~Vw  168 (168)
T 3rf2_A          154 ARRMRKGGEVIAFVW  168 (168)
T ss_dssp             HHHTTCCEEEEEEEC
T ss_pred             HHHhCCCCEEEEEEC
Confidence            999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1i6ua_	129	d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Meth	4e-43
d1seia_	130	d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stea	3e-30
d2gy9h1	126	d.140.1.1 (H:3-128) Ribosomal protein S8 {Escheric	2e-28
d1an7a_	136	d.140.1.1 (A:) Ribosomal protein S8 {Thermus therm	7e-25

>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  136 bits (343), Expect = 4e-43
 Identities = 59/125 (47%), Positives = 88/125 (70%)

Query: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL 65
            L +AL  + N E+ GK+ V I+P+SK+I + L VMQ +GYIGEFE+++D RAG   VEL
Sbjct: 5   PLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVEL 64

Query: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125
            G++NKCG I PRF V     E +  R LP+R FG ++++T+ G+M HEEA+++ +GG++
Sbjct: 65  IGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRL 124

Query: 126 LGFFY 130
           L + Y
Sbjct: 125 LAYVY 129

>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]} Length = 130

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  103 bits (258), Expect = 3e-30
 Identities = 28/124 (22%), Positives = 64/124 (51%), Gaps = 3/124 (2%)

Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELN 66
           + D L ++ NA      ++ + P+SK+  +   ++++ G+I ++EY++D++ G + + L 
Sbjct: 6   IADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLK 64

Query: 67  GRLNKCGVISPRFDVGVKEIEGWTARLLPS--RQFGYIVLTTSAGIMDHEEARRKNVGGK 124
              N+  +   +            A  +P      G  +L+TS G++  +EAR+K  GG+
Sbjct: 65  YGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGE 124

Query: 125 VLGF 128
           ++ +
Sbjct: 125 IIAY 128

>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Escherichia coli [TaxId: 562]

 Score = 98.9 bits (246), Expect = 2e-28
 Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELN 66
           + D L  + N +   K  V + PSSK+ +    V+++ G+I +F+   D +  ++ + L 
Sbjct: 4   IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTK-PELELTLK 61

Query: 67  GRLNKCGVISPRFDV---GVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 123
               K  V+     V   G++  +            G  V++TS G+M    AR+  +GG
Sbjct: 62  YFQGKA-VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGG 120

Query: 124 KVLGF 128
           +++ +
Sbjct: 121 EIICY 125

>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]} Length = 136

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Thermus thermophilus [TaxId: 274]

 Score = 90.1 bits (223), Expect = 7e-25
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 13/135 (9%)

Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELN 66
           + D L  + NA +  K    + P+S+   + L ++ + G+I  +E VD      + V L 
Sbjct: 4   IADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLK 62

Query: 67  GRLNKCGVISPRFDVGVKEIE-----------GWTARLLPSRQFGYIVLTTSAGIMDHEE 115
               + G   PR +  +  I            G        R  G  +L+TS G++   E
Sbjct: 63  YGPRRQGP-DPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDRE 121

Query: 116 ARRKNVGGKVLGFFY 130
           AR+  VGG+++   +
Sbjct: 122 ARKLGVGGELICEVW 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1i6ua_	129	Ribosomal protein S8 {Archaeon Methanococcus janna	100.0
d1seia_	130	Ribosomal protein S8 {Bacillus stearothermophilus	100.0
d2gy9h1	126	Ribosomal protein S8 {Escherichia coli [TaxId: 562	100.0
d1an7a_	136	Ribosomal protein S8 {Thermus thermophilus [TaxId:	100.0

>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.5e-47  Score=272.89  Aligned_cols=123  Identities=43%  Similarity=0.817  Sum_probs=113.2

Q ss_pred             ccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccccceecc
Q 032911            3 RVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVG   82 (130)
Q Consensus         3 ~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRvy~~   82 (130)
                      ++|++|||||+||||++|+|.+|.+.|+||++++||++|++||||++|++.++++++.+.|+|+|+.+++|+|+     .
T Consensus         2 m~D~iaD~ltrIrNA~~~~~~~V~i~P~Skl~~~Il~iL~~eGyI~~~~~~~~~~~~~i~i~L~~~~~~~~~I~-----~   76 (129)
T d1i6ua_           2 LMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIK-----P   76 (129)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECS-----S
T ss_pred             CccHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHHHHHHHhhhccccCCCceeEEEecccccCcccc-----c
Confidence            57999999999999999999999976999999999999999999999999888888999999999988889999     6


Q ss_pred             cceeecccccc-----CCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           83 VKEIEGWTARL-----LPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        83 ~~~isk~~~r~-----l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                      .+.+|+|+.|.     +|.+|+|++|||||+|||||+|||++|+|||+||+||
T Consensus        77 ~~~vskp~~r~~~~~~~~~~glGi~IlSTSkGimt~~eAr~~~vGGEiLc~V~  129 (129)
T d1i6ua_          77 RFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY  129 (129)
T ss_dssp             CCEECTTCCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             eEeeecccccchhhccCCCCCCeEEEEECCccccCHHHHHHcCCCceEEEEEC
Confidence            66777776544     4669999999999999999999999999999999999

>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=7.5e-46  Score=264.00  Aligned_cols=120  Identities=27%  Similarity=0.530  Sum_probs=108.8

Q ss_pred             ccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccc------
Q 032911            3 RVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVIS------   76 (130)
Q Consensus         3 ~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~------   76 (130)
                      +.|++|||||+||||++++|.+|.+ |+|+++.++|++|++||||++|++.++++.+.++|.|||..++ |+|+      
T Consensus         2 m~D~iaD~lt~IrNA~~a~k~~V~i-p~Skl~~~il~vL~~eGyI~~f~~~~~~~~~~i~v~Lk~~~~~-~~i~~~~~vS   79 (130)
T d1seia_           2 MTDPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPNE-RVITGLKRIS   79 (130)
T ss_dssp             CSHHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSSS-BSCCCEEECC
T ss_pred             ccchHHHHHHHHHHHHHcCCCEEEe-cCcHHHHHHHHHHHHhcccceeEEeeccCCceEEEEecccCCc-cccccceecc
Confidence            4699999999999999999999998 9999999999999999999999999988888999999999876 7776      


Q ss_pred             -c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           77 -P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        77 -p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                       |  |+|.+.++++++.      +|+|++|||||+|+|||+||+++++|||+||+||
T Consensus        80 kpg~r~y~~~~~l~~~~------~g~G~~IvSTskGimt~~eA~~~~iGGell~~Vf  130 (130)
T d1seia_          80 KPGLRVYVKAHEVPRVL------NGLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI  130 (130)
T ss_dssp             BTTBCCEECGGGCCCCC------TTSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             cCCeEEEcchhhhhhhh------hhceEEEEECCCCeeeHHHHHHhCCCcEEEEEEC
Confidence             4  6666666664432      8999999999999999999999999999999997

>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-43  Score=251.18  Aligned_cols=117  Identities=26%  Similarity=0.441  Sum_probs=104.8

Q ss_pred             cchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccc-------
Q 032911            4 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVIS-------   76 (130)
Q Consensus         4 ~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~-------   76 (130)
                      .|++||||++||||+++++.+|.+ |+|+++.++|++|++||||++|++.+++ +..++|.|||+.++ |+|+       
T Consensus         1 qD~iaD~l~~I~NA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~f~~~~~~-k~~i~i~Lky~~~k-~vI~~~~~vSk   77 (126)
T d2gy9h1           1 QDPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDT-KPELELTLKYFQGK-AVVESIQRVSR   77 (126)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEECC-BCCHHHHHHHHHHHHHTSEEEEEEECSS-SCEEEEEECCCSSS-CSCSCCEECSC
T ss_pred             CCcHHHHHHHhHhHHHcCCCEEEe-eCcHHHHHHHHHHHhcCcccccEEecCC-CceEEEEEeccCCC-EEEecceEeec
Confidence            389999999999999999999998 9999999999999999999999987654 57899999999776 7886       


Q ss_pred             c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEE
Q 032911           77 P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFF  129 (130)
Q Consensus        77 p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V  129 (130)
                      |  |+|++.++++++.      +|+|++|||||+|||||+||+++|+|||+||+|
T Consensus        78 p~~r~y~~~~~l~~~~------~g~G~~IlSTskGimt~~eA~~~~vGGelL~~V  126 (126)
T d2gy9h1          78 PGLRIYKRKDELPKVM------AGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV  126 (126)
T ss_dssp             SSSCCBCCTTTCCCGG------GGTSCEEEEETTEEEEHHHHHHHTCCCEEEEEC
T ss_pred             CCcccccchhhhhhcc------CceeEEEecCCCceEEHHHHHHhCCCcEEEEEC
Confidence            4  6666666665433      899999999999999999999999999999997

>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.2e-43  Score=250.20  Aligned_cols=120  Identities=31%  Similarity=0.455  Sum_probs=105.2

Q ss_pred             cchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCC-------Ccccc
Q 032911            4 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNK-------CGVIS   76 (130)
Q Consensus         4 ~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~-------~~~I~   76 (130)
                      .|+|||||++||||+++++.+|.+ |+|+++.+||++|++||||++|++.+++....+.+.++|..+.       .|+|+
T Consensus         1 tD~iaD~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   79 (136)
T d1an7a_           1 TDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIH   79 (136)
T ss_dssp             CCHHHHHHHHHHHHHTTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEECEEEECSSSCCSEEESCC
T ss_pred             CCcHHHHHHHHHhHHHcCCCEEEe-cccHHHHHHHHHHHHCCcccceEEeccCCcceeeeeeehhhhcccCCCCCCcccc
Confidence            389999999999999999999998 9999999999999999999999999877777788887654321       25564


Q ss_pred             -------c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911           77 -------P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
Q Consensus        77 -------p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~  130 (130)
                             |  |+|++.++++++.      +|+|++|||||+|||||+||+++|+|||+||+||
T Consensus        80 ~i~~vSkP~~Rvy~~~~~l~~~~------~g~G~~IlSTskGimt~~eA~~~~iGGe~L~~v~  136 (136)
T d1an7a_          80 HIRRISKPGRRVYVGVKEIPRVR------RGLGIAILSTSKGVLTDREARKLGVGGELICEVW  136 (136)
T ss_dssp             CEEECSBTTBCCEECGGGCCCGG------GGTSEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             eeEEeccCCcccccCcchhhhcc------CCeEEEEEeCCCCeeeHHHHHHcCCCCEEEEEEC
Confidence                   5  7777777775543      8999999999999999999999999999999999