Citrus Sinensis ID: 032926

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR
Secondary Structure (PSIPRED)
ccHHHHHcccccccccccccHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHccccHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSCDVFEKfkdddgkfkasLTNDVEGMLSLYEAAHlaipgedilDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPLRRAVSRLEsryfldiyprddlhdqtlLNFAKLDFNILQAMHQKKASEINR
Flexible Loop (DISEMBL)
MSCDVFEKfkdddgkfkaSLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQirhslrvplrraVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQkkaseinr
Low Complexity Region (SEG)
MSCdvfekfkdddgkfkASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR
Disordered region (IsUnstruct)
*****************ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQA***********
Disordered Region (DISOPRED)
MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR
Disordered Region (DISEMBL)
MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMH*********
Disordered Region (DISPRO)
MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEIN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q94JS8	560	(E)-beta-farnesene syntha	N/A	no	1.0	0.232	0.751	1e-53
Q6Q3H3	557	(-)-germacrene D synthase	no	no	0.976	0.228	0.534	1e-36
Q6Q3H2	556	Valencene synthase OS=Vit	no	no	0.984	0.230	0.5	3e-35
B2KSJ5	571	(+)-gamma-cadinene syntha	N/A	no	1.0	0.227	0.511	6e-35
Q9FQ27	544	(E,E)-germacrene B syntha	N/A	no	1.0	0.238	0.503	2e-33
O49853	554	(+)-delta-cadinene syntha	N/A	no	0.984	0.231	0.5	3e-33
Q39760	554	(+)-delta-cadinene syntha	N/A	no	0.984	0.231	0.484	1e-32
Q39761	554	(+)-delta-cadinene syntha	N/A	no	0.984	0.231	0.492	2e-32
Q5SBP7	550	Selinene synthase OS=Ocim	N/A	no	0.984	0.232	0.492	2e-32
J9RLZ7	563	Germacrene C/D synthase O	N/A	no	0.984	0.227	0.460	2e-32

>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1

 Score =  207 bits (527), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 116/133 (87%), Gaps = 3/133 (2%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVF+KFKDD+GKFK SL ND+ GMLSLYEAA+LAI GEDILDEAIVFTTTHLKS++S
Sbjct: 127 ISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVIS 186

Query: 61  ---NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNIL 117
              +S  NS  AEQIRHSL++PLR+A +RLE+RYFLDIY RDDLHD+TLL FAKLDFNIL
Sbjct: 187 ISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNIL 246

Query: 118 QAMHQKKASEINR 130
           QA HQK+AS + R
Sbjct: 247 QAAHQKEASIMTR 259

Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7

>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 98/129 (75%), Gaps = 2/129 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCD+F  FKD++G FK SL++DV GMLSLYEA H  + GEDILDEA+ FTTTHL+S   
Sbjct: 131 VSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDEALAFTTTHLQSATK 190

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           +S  ++  AEQ+ H+L+ P+R+ + RLE+R++  +Y  DD H++ LL  AKLDFN+LQ +
Sbjct: 191 HS--SNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKALLKLAKLDFNLLQKL 248

Query: 121 HQKKASEIN 129
           HQK+ S+I+
Sbjct: 249 HQKELSDIS 257

Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.

Vitis vinifera (taxid: 29760)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 7

EC: 5

>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 97/130 (74%), Gaps = 2/130 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCD+F KF D+ G+FK +L +DV GML LYEAAHL + GEDIL +A+ FTTTHLK+MV 
Sbjct: 131 ISCDIFNKFTDERGRFKEALISDVRGMLGLYEAAHLRVHGEDILAKALAFTTTHLKAMVE 190

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           +  +    AEQ+ H+L  P+R+ + RLE+R+++ +Y  +  HD+TLL  AKLDFN++Q++
Sbjct: 191 S--LGYHLAEQVAHALNRPIRKGLERLEARWYISVYQDEAFHDKTLLELAKLDFNLVQSL 248

Query: 121 HQKKASEINR 130
           H+++ S + R
Sbjct: 249 HKEELSNLAR 258

Involved in the biosynthesis of valencene, a major volatile emitted from flowers of grapevine. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (+)-valencene and (-)-7-epi-alpha-selinene along with five minor products.

Vitis vinifera (taxid: 29760)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 8

EC: 6

>sp|B2KSJ5|GCSY1_CUCME (+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/131 (51%), Positives = 101/131 (77%), Gaps = 1/131 (0%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCD+F KF DD+GKFK SL  D  G+LSLYEA+H+   GE +L+EA+ FTTTHL++ + 
Sbjct: 141 ISCDIFLKFMDDNGKFKESLVEDERGLLSLYEASHMMGHGEALLEEALEFTTTHLQTYIH 200

Query: 61  N-SQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQA 119
             S +N +FA ++ ++L++P+R++V R+++R +L+IY +   H++TLL F+KLDFNILQ 
Sbjct: 201 RYSNINPSFASEVSNALKLPIRKSVPRIKAREYLEIYQQHPSHNETLLEFSKLDFNILQK 260

Query: 120 MHQKKASEINR 130
           +HQK+ SEI R
Sbjct: 261 LHQKELSEICR 271

Sesquiterpene synthase producing mainly delta- and gamma-cadinene with traces of several other sesquiterpenoids, including alpha-copaene. Associated with the production of sesquiterpenes responsible for the aroma of the fruit.

Cucumis melo (taxid: 3656)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 9

EC: 2

>sp|Q9FQ27|TPSGB_SOLHA (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 98/131 (74%), Gaps = 1/131 (0%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           MS DVF++F + DGKFK +LTNDV+G+LSLYEA++L +  E+IL+EA+ FTTTHLKS+VS
Sbjct: 114 MSSDVFKQFTNQDGKFKETLTNDVQGLLSLYEASYLRVRDEEILEEALAFTTTHLKSIVS 173

Query: 61  N-SQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQA 119
             S  N++   ++  +L  P+R  + R+E+R ++ IY  +D H+  LL FAKLDFN+LQ 
Sbjct: 174 TMSNNNNSLKVEVSEALTQPIRMTLPRMEARRYISIYENNDAHNHLLLKFAKLDFNMLQK 233

Query: 120 MHQKKASEINR 130
           +HQ++ S++ R
Sbjct: 234 LHQRELSDLTR 244

Involved in the biosynthesis of germacrene B.

Solanum habrochaites (taxid: 62890)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 7

EC: 1

>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 99/130 (76%), Gaps = 2/130 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVF KFKD+ G FK+S+T+DV+G+L LY+A++L + GEDILDEAI FTT HL   VS
Sbjct: 128 VSCDVFNKFKDEQGNFKSSVTSDVQGLLELYQASYLRVHGEDILDEAISFTTNHLSLAVS 187

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           +  ++   +E++ H+L+  +RR + R+E+R++L +Y   + H++ LL FAK+DFN+LQ +
Sbjct: 188 S--LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFL 245

Query: 121 HQKKASEINR 130
           H+K+ SEI R
Sbjct: 246 HRKELSEICR 255

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 99/130 (76%), Gaps = 2/130 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVF KFKD+ G FK+S+T+DV G+L LY+A++L + GEDILDEAI FTT HL   V+
Sbjct: 128 VSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTNHLSLAVA 187

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           +  ++   +E++ H+L+  +RR + R+E+R++L +Y   + H++ LL FAK+DFN++Q +
Sbjct: 188 S--LDYPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKVLLEFAKIDFNMVQLL 245

Query: 121 HQKKASEINR 130
           H+K+ SEI+R
Sbjct: 246 HRKELSEISR 255

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 98/130 (75%), Gaps = 2/130 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVF KFKD+ G FK+S+T+DV G+L LY+A++L + GEDILDEAI FTT HL   V+
Sbjct: 128 VSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVA 187

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           +  ++   +E++ H+L+  +RR + R+E+R++L +Y   + H++ LL FAK+DFN+LQ +
Sbjct: 188 S--LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFL 245

Query: 121 HQKKASEINR 130
           H+K+ SEI R
Sbjct: 246 HRKELSEICR 255

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q5SBP7|SELS_OCIBA Selinene synthase OS=Ocimum basilicum GN=SES PE=1 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 94/130 (72%), Gaps = 2/130 (1%)

Query: 3   CDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSN- 61
           CDVFEKF DD G FK SL  DVEGMLSLYEA++  I GE+I+D+A+ F+++HL+SM+ N 
Sbjct: 133 CDVFEKFMDDGGNFKESLKKDVEGMLSLYEASYYGIDGEEIMDKALEFSSSHLESMLHNI 192

Query: 62  -SQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
            ++ N +   +++ +L  P+ +A  RL +  F+  Y  D+ H++ +LNFAKLDFNILQ M
Sbjct: 193 STKTNKSLLRRLQEALDTPISKAAIRLGATKFISTYREDESHNEDILNFAKLDFNILQKM 252

Query: 121 HQKKASEINR 130
           HQ++A+ + R
Sbjct: 253 HQEEANYLTR 262

Sesquiterpene synthase that catalyzes the formation of alpha- and beta-selinene from trans,trans-farnesyl diphosphate (FPP). Produces also some nerolidol.

Ocimum basilicum (taxid: 39350)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: n

EC: 1

EC: 1

>sp|J9RLZ7|TPS1_VALOF Germacrene C/D synthase OS=Valeriana officinalis GN=TPS1 PE=1 SV=1

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 95/128 (74%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SC VFEKFK+ DG+F   LT+DV G+LSLYE+ H+ +  EDIL+EA+ FT   L+ ++ 
Sbjct: 134 VSCAVFEKFKNIDGRFNECLTDDVRGLLSLYESTHMRVHKEDILEEALEFTVAQLEQVIK 193

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           +S  +     Q+ H+L +P+R++++RLE+RYF+ +Y +D   ++TLL F+KLDFNILQ +
Sbjct: 194 SSLSDKVLLSQVVHALNIPIRKSLTRLEARYFISVYEQDKSCNETLLKFSKLDFNILQKL 253

Query: 121 HQKKASEI 128
           HQ++ +++
Sbjct: 254 HQQEVADL 261

Mediates formation of germacrene C and germacrene D using farnesyl diphosphate as substrate. Can also catalyze formation of trace of germacrene B.

Valeriana officinalis (taxid: 19953)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
313585892	551	Tps2-1 [Clausena lansium]	1.0	0.235	0.9	1e-61
300079902	560	(E)-beta-farnesene synthase [Citrus reti	1.0	0.232	0.759	3e-52
75250254	560	RecName: Full=(E)-beta-farnesene synthas	1.0	0.232	0.751	1e-51
9864189	555	terpene synthase [Citrus junos]	1.0	0.234	0.653	5e-44
261343328	548	terpene synthase 1 [Citrus sinensis]	1.0	0.237	0.598	2e-39
19880625	548	putative terpene synthase [Citrus x para	1.0	0.237	0.598	5e-39
33316389	548	valencene synthase [Citrus sinensis]	1.0	0.237	0.598	6e-39
297740982	584	unnamed protein product [Vitis vinifera]	0.984	0.219	0.538	1e-35
225460101	555	PREDICTED: valencene synthase [Vitis vin	0.984	0.230	0.538	1e-35
380751740	567	terpene synthase [Camellia sinensis]	0.984	0.225	0.569	5e-35

>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 123/130 (94%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVFEKFKDDDGKFKASL NDV+GMLSLYEAAHLAI GEDILDEAIVFTTTHLKS VS
Sbjct: 119 ISCDVFEKFKDDDGKFKASLMNDVQGMLSLYEAAHLAIHGEDILDEAIVFTTTHLKSTVS 178

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           NS VNSTFAEQIRHSLRVPLR+AV RLESRYFLDIY RDDLHD+TLLNFAKLDFNILQAM
Sbjct: 179 NSPVNSTFAEQIRHSLRVPLRKAVPRLESRYFLDIYSRDDLHDKTLLNFAKLDFNILQAM 238

Query: 121 HQKKASEINR 130
           HQK+ASE+ R
Sbjct: 239 HQKEASEMTR 248

Source: Clausena lansium

Species: Clausena lansium

Genus: Clausena

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/133 (75%), Positives = 117/133 (87%), Gaps = 3/133 (2%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVF+KFKDD+GKFK SL ND+ GMLSLYEAA+LAI GEDILDEAIVFTTTHLKS++S
Sbjct: 127 ISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVIS 186

Query: 61  ---NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNIL 117
              +S VNS  AEQIRHSL++PLR+A +RLE+RYFLDIY RDDLHD+TLL FAKLDFNIL
Sbjct: 187 ISDHSHVNSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNIL 246

Query: 118 QAMHQKKASEINR 130
           QA HQK+AS + R
Sbjct: 247 QAAHQKEASIMTR 259

Source: Citrus reticulata

Species: Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 116/133 (87%), Gaps = 3/133 (2%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVF+KFKDD+GKFK SL ND+ GMLSLYEAA+LAI GEDILDEAIVFTTTHLKS++S
Sbjct: 127 ISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVIS 186

Query: 61  ---NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNIL 117
              +S  NS  AEQIRHSL++PLR+A +RLE+RYFLDIY RDDLHD+TLL FAKLDFNIL
Sbjct: 187 ISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNIL 246

Query: 118 QAMHQKKASEINR 130
           QA HQK+AS + R
Sbjct: 247 QAAHQKEASIMTR 259

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 102/130 (78%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           + CDVF KFKDD+GKFKASL  DV G+LSLYEA HLAI GE ILDEAI FT THL+SMVS
Sbjct: 128 VPCDVFAKFKDDEGKFKASLVRDVHGILSLYEAGHLAIRGEGILDEAIAFTRTHLQSMVS 187

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
                +  AEQI H+L  PLRRA+ R+E+R+FL +YPRDD HD+TLL F+KLDFN++Q +
Sbjct: 188 QDVCPNNLAEQINHTLDCPLRRALPRVETRFFLSVYPRDDKHDKTLLKFSKLDFNLVQRI 247

Query: 121 HQKKASEINR 130
           HQK+ S I R
Sbjct: 248 HQKELSAITR 257

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 105/132 (79%), Gaps = 2/132 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVFEKFKDD+G+FK+SL NDV+GMLSLYEAA++A+ GE ILDEAI FTTTHLKS+V+
Sbjct: 118 ISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVA 177

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIY--PRDDLHDQTLLNFAKLDFNILQ 118
              V    AEQI H+L  PLR+ + RLE+RYF+ +     D L+++TLLNFAKLDFNIL 
Sbjct: 178 QDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNILL 237

Query: 119 AMHQKKASEINR 130
            +H+++ +E+ +
Sbjct: 238 ELHKEELNELTK 249

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 104/132 (78%), Gaps = 2/132 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVFEKFKDD+G+FK+SL NDV+GMLSLYEAA++A+ GE ILDEAI FTTTHLKS+V+
Sbjct: 118 ISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVA 177

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIY--PRDDLHDQTLLNFAKLDFNILQ 118
              V    AEQI H+L  PLR+ + RLE+RYF+ +     D L+++TLLNFAKLDFNIL 
Sbjct: 178 QDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNILL 237

Query: 119 AMHQKKASEINR 130
             H+++ +E+ +
Sbjct: 238 EPHKEELNELTK 249

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 104/132 (78%), Gaps = 2/132 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVFEKFKDD+G+FK+SL NDV+GMLSLYEAA++A+ GE ILDEAI FTTTHLKS+V+
Sbjct: 118 ISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVA 177

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIY--PRDDLHDQTLLNFAKLDFNILQ 118
              V    AEQI H+L  PLR+ + RLE+RYF+ +     D L ++TLLNFAKLDFNIL 
Sbjct: 178 QDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLCNKTLLNFAKLDFNILL 237

Query: 119 AMHQKKASEINR 130
            +H+++ +E+ +
Sbjct: 238 ELHKEELNELTK 249

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740982|emb|CBI31294.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 100/130 (76%), Gaps = 2/130 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SC +F +FKD+ G FK +L +DV GML LYEAAHL + GEDILDEA+ FTTTHL+SMV 
Sbjct: 159 ISCGLFNEFKDEKGNFKKALISDVRGMLGLYEAAHLRVRGEDILDEALAFTTTHLRSMVE 218

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           +  +   FAEQ+ H+L+ P+RR + RLE+R+++ IY  +  HD+TLL  AKLDFN++Q++
Sbjct: 219 H--LEYPFAEQVVHALKQPIRRGLERLEARWYISIYQDETSHDRTLLKLAKLDFNLVQSL 276

Query: 121 HQKKASEINR 130
           H+++ S I+R
Sbjct: 277 HKEELSNISR 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460101|ref|XP_002274781.1| PREDICTED: valencene synthase [Vitis vinifera] gi|147775857|emb|CAN64791.1| hypothetical protein VITISV_001915 [Vitis vinifera] gi|313755472|gb|ADR74227.1| alpha-humulene synthase [synthetic construct]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 100/130 (76%), Gaps = 2/130 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SC +F +FKD+ G FK +L +DV GML LYEAAHL + GEDILDEA+ FTTTHL+SMV 
Sbjct: 130 ISCGLFNEFKDEKGNFKKALISDVRGMLGLYEAAHLRVRGEDILDEALAFTTTHLRSMVE 189

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           +  +   FAEQ+ H+L+ P+RR + RLE+R+++ IY  +  HD+TLL  AKLDFN++Q++
Sbjct: 190 H--LEYPFAEQVVHALKQPIRRGLERLEARWYISIYQDETSHDRTLLKLAKLDFNLVQSL 247

Query: 121 HQKKASEINR 130
           H+++ S I+R
Sbjct: 248 HKEELSNISR 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380751740|gb|AFE56211.1| terpene synthase [Camellia sinensis]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 95/130 (73%), Gaps = 2/130 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVF KFKDD+GK + SL  DV GMLSLYEAAHL + GEDILDEA+ FT THL+S V 
Sbjct: 136 ISCDVFNKFKDDNGKIRESLIGDVRGMLSLYEAAHLRVRGEDILDEALSFTITHLESAVP 195

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           N  +++   EQ+ H+L  P+   ++RLE+  +   Y +DD H++ LLNFAKLDFN+LQ M
Sbjct: 196 N--LSNLVQEQVIHALNQPIHMGLTRLEATRYFFFYEQDDSHNEVLLNFAKLDFNLLQKM 253

Query: 121 HQKKASEINR 130
           HQ + SEI R
Sbjct: 254 HQWELSEITR 263

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
UNIPROTKB|B2KSJ5	571	B2KSJ5 "(+)-gamma-cadinene syn	0.861	0.196	0.486	2.7e-25
UNIPROTKB|E2E2N7	555	TPS4 "Bicyclogermacrene syntha	0.861	0.201	0.451	3.9e-24
UNIPROTKB|B5A435	559	B5A435 "Sesquiterpene synthase	0.846	0.196	0.482	1.8e-23
UNIPROTKB|J7LJN5	555	J7LJN5 "Beta-caryophyllene syn	0.861	0.201	0.451	1.3e-22
UNIPROTKB|Q672F7	595	EBOS "Tricyclene synthase EBOS	0.853	0.186	0.464	1.4e-20
UNIPROTKB|B5A434	576	B5A434 "(+)-alpha-terpineol sy	0.861	0.194	0.424	7.5e-20
UNIPROTKB|B3TPQ6	550	B3TPQ6 "Beta-cubebene synthase	0.830	0.196	0.436	1.1e-19
UNIPROTKB|Q49SP5	554	Q49SP5 "Germacrene A synthase"	0.846	0.198	0.437	1.1e-19
UNIPROTKB|B3TPQ7	592	B3TPQ7 "Alpha-terpineol syntha	0.846	0.185	0.455	1.7e-19
TAIR|locus:2178657	547	TPS21 "terpene synthase 21" [A	0.838	0.199	0.414	6.3e-19

UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)]

 Score = 294 (108.6 bits), Expect = 2.7e-25, P = 2.7e-25
 Identities = 55/113 (48%), Positives = 86/113 (76%)

Query:    19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSN-SQVNSTFAEQIRHSLR 77
             SL  D  G+LSLYEA+H+   GE +L+EA+ FTTTHL++ +   S +N +FA ++ ++L+
Sbjct:   159 SLVEDERGLLSLYEASHMMGHGEALLEEALEFTTTHLQTYIHRYSNINPSFASEVSNALK 218

Query:    78 VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
             +P+R++V R+++R +L+IY +   H++TLL F+KLDFNILQ +HQK+ SEI R
Sbjct:   219 LPIRKSVPRIKAREYLEIYQQHPSHNETLLEFSKLDFNILQKLHQKELSEICR 271

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)]

 Score = 283 (104.7 bits), Expect = 3.9e-24, P = 3.9e-24
 Identities = 51/113 (45%), Positives = 87/113 (76%)

Query:    19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNS-TFAEQIRHSLR 77
             +LTNDVEG+L LYEA+HLA  GE+ILD A+ F+++HL+++++   V S + ++++  +L+
Sbjct:   147 ALTNDVEGLLELYEASHLATRGEEILDRAMEFSSSHLQALLNQHLVGSVSLSKRVDEALK 206

Query:    78 VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
             +P+R+ ++RL +R F+ +Y  D+  ++ LLNFAKLDFN++Q MHQ++ S+  R
Sbjct:   207 MPIRKTLTRLGARKFISLYQEDESRNELLLNFAKLDFNMVQKMHQRELSDATR 259

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)]

 Score = 277 (102.6 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 54/112 (48%), Positives = 81/112 (72%)

Query:    19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
             SL  D +G+L LYEA HL++ GE++LD+A+ F  T L+S+V++  +N   AEQ+RH+L  
Sbjct:   151 SLMEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESIVNH--LNYPLAEQVRHALYR 208

Query:    79 PLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
             PLR+ + RLE+ YF  IY   D H++ LL  AKLDFN+LQ++H+K+ S++ R
Sbjct:   209 PLRKGLPRLEAVYFFRIYEAYDSHNKALLKLAKLDFNLLQSLHKKELSDMAR 260

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)]

 Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/113 (45%), Positives = 77/113 (68%)

Query:    19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS-NSQVNSTFAEQIRHSLR 77
             SL +DV GMLSLYEAAH  + GE ILDEA+VF++++LKS+++ N   NS    +I  +  
Sbjct:   149 SLADDVRGMLSLYEAAHCGVQGEKILDEALVFSSSNLKSILAKNHMSNSGLTARIEEAFD 208

Query:    78 VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
              P+R+ ++   +R F+ +Y  D+ H + LL FA+LDFN  Q +HQK+ S++ R
Sbjct:   209 TPIRKCLTNFGARKFMSMYEEDESHSEALLKFARLDFNFSQKLHQKEISDLTR 261

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901937 "beta-caryophyllene biosynthetic process" evidence=IDA

UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)]

 Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 52/112 (46%), Positives = 75/112 (66%)

Query:    19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
             SL N+V+GMLSLYEA+ L+  GE ILD+A  FT+ HLKS +    +N+   EQ+ H+L +
Sbjct:   181 SLVNNVKGMLSLYEASFLSYEGEQILDKANAFTSFHLKS-IHEEDINNILLEQVNHALEL 239

Query:    79 PLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
             PL R + RLE+R++ + Y R    +  LL  AKLDFN++Q+  QK   E++R
Sbjct:   240 PLHRRIHRLEARWYTESYSRRKDANWVLLEAAKLDFNMVQSTLQKDLQEMSR 291

GO:0008152 "metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)]

 Score = 244 (91.0 bits), Expect = 7.5e-20, P = 7.5e-20
 Identities = 48/113 (42%), Positives = 78/113 (69%)

Query:    18 ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLR 77
             + L  DV G+LSLYEA++L   GED+LDEA  F+TT+L + V  S  ++T    ++H+L 
Sbjct:   161 SQLCKDVRGLLSLYEASYLGWEGEDLLDEAKKFSTTNLNN-VKESISSNTLGRLVKHALN 219

Query:    78 VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
             +PL  + +R E+R+F+D Y +++  +  LL +AKLDFNI+Q++HQ++   + R
Sbjct:   220 LPLHWSAARYEARWFIDEYEKEENVNPNLLKYAKLDFNIVQSIHQQELGNLAR 272

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)]

 Score = 242 (90.2 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 48/110 (43%), Positives = 74/110 (67%)

Query:    20 LTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVP 79
             L+ D  G+LSLYEAA L   G+DILDEAI FTT HLKS + +  V++   + +  +L +P
Sbjct:   143 LSKDTHGLLSLYEAAFLGTHGDDILDEAITFTTVHLKSTLPH--VSAPLTKLVELALEIP 200

Query:    80 LRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEIN 129
             L R + RL++R+++ IY  D   +  LL F+KL+F  LQ++HQ++  +I+
Sbjct:   201 LHRRMERLQTRFYISIYEEDRERNDVLLEFSKLEFLRLQSLHQRELRDIS 250

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)]

 Score = 242 (90.2 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 49/112 (43%), Positives = 76/112 (67%)

Query:    19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
             S+ +D +G+LSLYEA  L   G+ +LDEA+VF T  LKSM +N  + S   +Q+ H+L  
Sbjct:   145 SIKSDAKGLLSLYEACCLRTHGDTLLDEALVFATASLKSMAAN--LASPLRKQVEHALFQ 202

Query:    79 PLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
              L   + R+E+R+F+  Y  ++  ++ LL FAKLDFN LQA+H+++ SEI++
Sbjct:   203 HLHFGIPRVEARHFITFYEEEEHKNEMLLRFAKLDFNALQALHKEELSEISK 254

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)]

 Score = 241 (89.9 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 51/112 (45%), Positives = 75/112 (66%)

Query:    18 ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLR 77
             ASL NDV+GMLSLYEA++LA+ GE  LDEA  FT  HL+ +  N  ++S     + H+L 
Sbjct:   180 ASLCNDVKGMLSLYEASYLALEGETTLDEAKAFTYRHLRGLKGN--IDSNLKGLVEHALE 237

Query:    78 VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEIN 129
             +PL   V RLE+R+++D Y R +  +  LL  AKLDFNI+Q ++Q +  +++
Sbjct:   238 LPLHWRVLRLEARWYIDTYERMEDMNPLLLELAKLDFNIVQNVYQGQVRKMS 289

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0043693 "monoterpene biosynthetic process" evidence=IDA

TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 6.3e-19, P = 6.3e-19
 Identities = 46/111 (41%), Positives = 74/111 (66%)

Query:    20 LTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVP 79
             L  D  GMLSLYEAA     GEDI+DEA+ F+ +HL+ + S S  +   A +I+++L+ P
Sbjct:   139 LVTDAYGMLSLYEAAQWGTHGEDIIDEALAFSRSHLEEISSRSSPH--LAIRIKNALKHP 196

Query:    80 LRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
               + +SR+E+R ++  Y  ++  D TLL FAK+DFN+LQ +H+++ + + R
Sbjct:   197 YHKGISRIETRQYISYYEEEESCDPTLLEFAKIDFNLLQILHREELACVTR 247

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0080016 "(-)-E-beta-caryophyllene synthase activity" evidence=IDA

GO:0080017 "alpha-humulene synthase activity" evidence=IDA

GO:0016106 "sesquiterpenoid biosynthetic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
cd00684	542	cd00684, Terpene_cyclase_plant_C1, Plant Terpene C	5e-61
pfam01397	177	pfam01397, Terpene_synth, Terpene synthase, N-term	4e-40
PLN02592	800	PLN02592, PLN02592, ent-copalyl diphosphate syntha	2e-13
PLN02279	784	PLN02279, PLN02279, ent-kaur-16-ene synthase	3e-07
pfam03936	270	pfam03936, Terpene_synth_C, Terpene synthase famil	0.004

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1

 Score =  195 bits (497), Expect = 5e-61
 Identities = 70/131 (53%), Positives = 102/131 (77%), Gaps = 1/131 (0%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +S DVF+KFKD+DGKFK SLT DV+GMLSLYEA+HL+ PGEDILDEA+ FTT HL+  + 
Sbjct: 115 VSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLE 174

Query: 61  -NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQA 119
            N  ++   + +I ++L +PL  ++ RLE+R++++ Y ++D H++TLL  AKLDFNILQA
Sbjct: 175 SNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQA 234

Query: 120 MHQKKASEINR 130
           +HQ++   ++R
Sbjct: 235 LHQEELKILSR 245

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542

>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain

 Score =  131 bits (332), Expect = 4e-40
 Identities = 46/76 (60%), Positives = 60/76 (78%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +S DVF KFKD+DGKFK SLTNDV+G+LSLYEA+HL   GEDILDEA+ FTT HL+S++S
Sbjct: 102 VSSDVFNKFKDEDGKFKESLTNDVKGLLSLYEASHLRTHGEDILDEALSFTTKHLESLLS 161

Query: 61  NSQVNSTFAEQIRHSL 76
           +       A+++ H+L
Sbjct: 162 SLSSPDNLAKEVEHAL 177

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 177

>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 21/145 (14%)

Query: 1   MSCDVFEKFKDDDG--KFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSM 58
           +S DVF+ F+       F    T  V GM +LY A+ +  PGE IL+ A  F++  L+  
Sbjct: 377 VSADVFKHFEKGGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREK 436

Query: 59  VSNSQ------VNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDD------------ 100
              ++      +      ++  +L +P   ++ R+E+R++++ Y  +D            
Sbjct: 437 QEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFYIEQYGGEDDVWIGKTLYRMP 496

Query: 101 -LHDQTLLNFAKLDFNILQAMHQKK 124
            +++   L  AKLD+N  QA+HQ +
Sbjct: 497 YVNNNEYLELAKLDYNNCQALHQLE 521

Length = 800

>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 18/148 (12%)

Query: 1   MSCDVFEKFKDDDGKFK-ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMV 59
           +S D  ++F +D           D   +L L+ A+ ++ P E +L++   +T+  L+  +
Sbjct: 332 VSSDPLKQFAEDHFSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGL 391

Query: 60  SNS-----QVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLH------------ 102
           SN      ++     +++  +L  P    + RL +R  ++ Y  DD              
Sbjct: 392 SNWSKTADRLRKYIKKEVEDALNFPYYANLERLANRRSIENYAVDDTRILKTSYRCSNIC 451

Query: 103 DQTLLNFAKLDFNILQAMHQKKASEINR 130
           +Q  L  A  DFN  Q++H+++  ++ R
Sbjct: 452 NQDFLKLAVEDFNFCQSIHREELKQLER 479

Length = 784

>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 15/25 (60%), Positives = 20/25 (80%)

Query: 106 LLNFAKLDFNILQAMHQKKASEINR 130
           LL  AKLDFN+LQA+HQ++  E+ R
Sbjct: 1   LLELAKLDFNLLQALHQQELKELTR 25

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 270

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
cd00684	542	Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C	100.0
PLN02279	784	ent-kaur-16-ene synthase	100.0
PLN02592	800	ent-copalyl diphosphate synthase	100.0
PF01397	183	Terpene_synth: Terpene synthase, N-terminal domain	99.94

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1

Probab=100.00  E-value=9.5e-51  Score=349.96  Aligned_cols=130  Identities=53%  Similarity=0.925  Sum_probs=125.3

Q ss_pred             CChHhhhccccCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcC-CCCccHHHHHHHhcCCc
Q 032926            1 MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNS-QVNSTFAEQIRHSLRVP   79 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~-~~~~~l~~~V~~aL~~P   79 (130)
                      ||||||++|+|++|+|++++.+||+||||||||||+++|||+|||+|+.||+++|++.++++ .++++|+++|++||++|
T Consensus       115 vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P  194 (542)
T cd00684         115 VSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIP  194 (542)
T ss_pred             cCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCc
Confidence            89999999999999999999999999999999999999999999999999999999999842 16889999999999999


Q ss_pred             ccchhhhHHHhhhhhhcCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           80 LRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        80 ~h~~l~Rlear~yI~~Y~~~~~~n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      |||++||+|||+||++|++++++|+.||||||+|||+||++||+||++++|
T Consensus       195 ~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~r  245 (542)
T cd00684         195 LHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSR  245 (542)
T ss_pred             hhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999999975

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi

>PLN02279 ent-kaur-16-ene synthase

Probab=100.00  E-value=8.3e-45  Score=323.60  Aligned_cols=128  Identities=27%  Similarity=0.505  Sum_probs=119.7

Q ss_pred             CChHhhhccccCCccccccc---hhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCC-----CCccHHHHH
Q 032926            1 MSCDVFEKFKDDDGKFKASL---TNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQ-----VNSTFAEQI   72 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~---~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~-----~~~~l~~~V   72 (130)
                      ||||||++|+|+ + |++++   .+||+||||||||||+++|||+|||+|+.||+++|++.++++.     ++++|+++|
T Consensus       332 VS~dvf~~F~~~-~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV  409 (784)
T PLN02279        332 VSSDPLKQFAED-H-FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEV  409 (784)
T ss_pred             CChhHHhhcCCC-c-ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHH
Confidence            899999999955 4 99887   6999999999999999999999999999999999999987532     467899999


Q ss_pred             HHhcCCcccchhhhHHHhhhhhhcCCCCc------------ccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           73 RHSLRVPLRRAVSRLESRYFLDIYPRDDL------------HDQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        73 ~~aL~~P~h~~l~Rlear~yI~~Y~~~~~------------~n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      ++||++|||+++||+|||+||++|+.++.            +|+.||||||+|||+||++||+||++|+|
T Consensus       410 ~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~r  479 (784)
T PLN02279        410 EDALNFPYYANLERLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLER  479 (784)
T ss_pred             HHHhcCchhcCccHHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCe
Confidence            99999999999999999999999998885            79999999999999999999999999986

>PLN02592 ent-copalyl diphosphate synthase

Probab=100.00  E-value=1.7e-43  Score=315.10  Aligned_cols=129  Identities=30%  Similarity=0.587  Sum_probs=119.1

Q ss_pred             CChHhhhccccCCccccccc---hhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCC------CCccHHHH
Q 032926            1 MSCDVFEKFKDDDGKFKASL---TNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQ------VNSTFAEQ   71 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~---~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~------~~~~l~~~   71 (130)
                      ||||||++|++ +|+|++..   .+|++|||+||||||+++|||.|||+|+.||+++|++.+..++      ++++|+++
T Consensus       377 VS~DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~e  455 (800)
T PLN02592        377 VSADVFKHFEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGE  455 (800)
T ss_pred             CChHHHHhhcC-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHH
Confidence            89999999986 89998655   8999999999999999999999999999999999999875222      35789999


Q ss_pred             HHHhcCCcccchhhhHHHhhhhhhcCCCCcc-------------cHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           72 IRHSLRVPLRRAVSRLESRYFLDIYPRDDLH-------------DQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        72 V~~aL~~P~h~~l~Rlear~yI~~Y~~~~~~-------------n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      |+|||++||||+|||+||||||++|++++++             |+.||||||+|||+||++||+||++++|
T Consensus       456 V~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsr  527 (800)
T PLN02592        456 VGFALEIPWYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQK  527 (800)
T ss_pred             HHHhccChhhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhH
Confidence            9999999999999999999999999987764             9999999999999999999999999986

>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family

Probab=99.94  E-value=4.8e-27  Score=179.34  Aligned_cols=76  Identities=59%  Similarity=0.953  Sum_probs=66.4

Q ss_pred             CChHhhhccccCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHhc
Q 032926            1 MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVN-STFAEQIRHSL   76 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~-~~l~~~V~~aL   76 (130)
                      ||||||++|+|++|+|+.++.+||+|||+||||||++++||+|||+|+.||+++|++++++...+ ++|+++|++||
T Consensus       107 VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL  183 (183)
T PF01397_consen  107 VSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL  183 (183)
T ss_dssp             --GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred             ccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence            89999999999999999999999999999999999999999999999999999999999864443 45999999997

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
3g4d_A	554	Crystal Structure Of (+)-Delta-Cadinene Synthase Fr		6e-25
3n0f_A	555	Crystal Structure Of Isoprene Synthase From Grey Po		2e-20
4di5_A	535	Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt		4e-20
1hx9_A	548	Crystal Structure Of Teas W273s Form 1 Length = 548		4e-20
5eas_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		4e-20
3m01_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		4e-20
5eat_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		4e-20
5eau_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		4e-20
3lz9_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		4e-20
1hxg_A	548	Crystal Structure Of Teas W273sC440W Length = 548		4e-20
1hxc_A	548	Crystal Structure Of Teas C440w Length = 548		4e-20
1n1b_A	549	Crystal Structure Of (+)-bornyl Diphosphate Synthas		6e-17
3sae_A	817	Structure Of A Three-Domain Sesquiterpene Synthase:		3e-15
2j5c_A	569	Rational Conversion Of Substrate And Product Specif		3e-11
2ong_A	543	Crystal Structure Of Of Limonene Synthase With 2- F		3e-11
3s9v_A	785	Abietadiene Synthase From Abies Grandis Length = 78		4e-11
3p5p_A	764	Crystal Structure Of Taxadiene Synthase From Pacifi		2e-09
3pya_A	727	Crystal Structure Of Ent-Copalyl Diphosphate Syntha		2e-08

>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554

Iteration: 1
 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
Query: 18  ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLR 77
           +S+T+DV G+L LY+A++L + GEDILDEAI FTT HL   V++  ++   +E++ H+L+
Sbjct: 145 SSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVAS--LDHPLSEEVSHALK 202
Query: 78  VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
             +RR + R+E+R++L +Y   + H++ LL FAK+DFN+LQ +H+K+ SEI R
Sbjct: 203 QSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICR 255

>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           +L  D + +LSLYEA+ LA+ GE+ILDEA VF  +HLK + S  ++    AEQ+ H+L +
Sbjct: 143 NLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKEL-SEEKIGKELAEQVNHALEL 201
Query: 79  PLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
           PL R   RLE+ + ++ Y + +  +Q LL  A LD+N++Q+++Q+   E +R
Sbjct: 202 PLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSR 253

>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S  +   + S   EQ+ H+L  
Sbjct: 126 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 183
Query: 79  PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 184 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 236

>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S  +   + S   EQ+ H+L  
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79  PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249

>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S  +   + S   EQ+ H+L  
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79  PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249

>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S  +   + S   EQ+ H+L  
Sbjct: 141 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 198
Query: 79  PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 199 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 251

>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S  +   + S   EQ+ H+L  
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79  PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249

>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S  +   + S   EQ+ H+L  
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79  PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249

>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S  +   + S   EQ+ H+L  
Sbjct: 141 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 198
Query: 79  PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 199 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 251

>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S  +   + S   EQ+ H+L  
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79  PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249

>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S  +   + S   EQ+ H+L  
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79  PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249

>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 18  ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMV--SNSQVNSTFAEQIRHS 75
           ASL  D +GML LYEA+ L   GED L+ A  F T  L+  +    ++++      IRHS
Sbjct: 136 ASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHS 195
Query: 76  LRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
           L +PL   +  +E+R+F+D Y R    +  +   AKL+FNI+QA HQ++  +++R
Sbjct: 196 LDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSR 250

>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 18/130 (13%)
Query: 18  ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTF------AEQ 71
                DV  ML+LY A+ LA PGE+ILDEA  F T +L+  +  S+ +S +      +++
Sbjct: 385 GQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQE 444
Query: 72  IRHSLRVPLRRAVSRLESRYFLDIYPRD------------DLHDQTLLNFAKLDFNILQA 119
           I+++L+     +V R+E++ +  +Y  D             ++++  L   KLDFNI+Q+
Sbjct: 445 IKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQS 504
Query: 120 MHQKKASEIN 129
           +HQ++   + 
Sbjct: 505 IHQEEMKNVT 514

>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHL-KSMVSNSQVNSTFAEQIRHSLR 77
           SL +D  G+L LYEA+ L+  GE+ L  A  F T  L K ++ +  +N      I  +L 
Sbjct: 161 SLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDIN--LLSSIERALE 218
Query: 78  VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
           +P    V    +R F+D Y R    + T+L  AKLDFN++QA  Q++  E +R
Sbjct: 219 LPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASR 271

>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%)
Query: 19  SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
           SL++D  G+L LYEA+ L   GE  L+ A  F T  L+  V+   V+     +I +SL +
Sbjct: 133 SLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDI 192
Query: 79  PLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASE 127
           PL   + R  +  +++ Y +    +  +L  A LD NI+QA  Q++  E
Sbjct: 193 PLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKE 241

>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 24  VEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFA------EQIRHSLR 77
           V  ML++   +H++ PGE I++EA + T  +L++ + N      +A       ++ ++L+
Sbjct: 363 VTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALK 422
Query: 78  VPLRRAVSRLESRYFLDIYPRDD------------LHDQTLLNFAKLDFNILQAMHQKKA 125
            P  +++ RLE+R +++ Y  DD            + ++  L  AKLDFN +Q++HQ + 
Sbjct: 423 YPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTEL 482
Query: 126 SEINR 130
            ++ R
Sbjct: 483 QDLRR 487

>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 23  DVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLK-SMVSNSQVNSTFAEQIRHSLRVPLR 81
           ++  +++L+ A+ LA P E  +D+A  F   +L+ ++ +    N+   ++I + +  P  
Sbjct: 338 ELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWH 397
Query: 82  RAVSRLESRYFLD------------IYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEIN 129
            ++ RLE+R ++D            +Y    L +   L  AKLDFNI+Q++HQ++   + 
Sbjct: 398 MSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLT 457
Query: 130 R 130
           R
Sbjct: 458 R 458

>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 25/132 (18%)
Query: 24  VEGMLSLYEAAHLAIPGEDILDEAIVFTTTHL------KSMVSNSQVNSTFAEQIRHSLR 77
           V GM +LY A+ LA P E+IL  A  F+  +L      + ++    +      +I  +L 
Sbjct: 337 VTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALE 396
Query: 78  VPLRRAVSRLESRYFLDIYPRDD-------------LHDQTLLNFAKLDFNILQAMHQ-- 122
           +P   ++ R+E+R+++D Y  ++             +++   L  AK D+N  QA HQ  
Sbjct: 397 IPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLE 456
Query: 123 ----KKASEINR 130
               +K  E NR
Sbjct: 457 WDIFQKWYEENR 468

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	1e-40
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	1e-39
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	4e-38
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	9e-38
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	5e-37
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	1e-35
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	2e-30
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	4e-30
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	2e-28
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	1e-27

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543

 Score =  140 bits (354), Expect = 1e-40
 Identities = 43/128 (33%), Positives = 73/128 (57%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           ++ +VF+ FK+++G+FK SL++D  G+L LYEA+ L   GE  L+ A  F T  L+  V+
Sbjct: 115 VAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVN 174

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
              V+     +I +SL +PL   + R  +  +++ Y +    +  +L  A LD NI+QA 
Sbjct: 175 EGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQ 234

Query: 121 HQKKASEI 128
            Q++  E 
Sbjct: 235 FQEELKES 242

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554

 Score =  138 bits (348), Expect = 1e-39
 Identities = 63/128 (49%), Positives = 96/128 (75%), Gaps = 2/128 (1%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +SCDVF KFKD+ G FK+S+T+DV G+L LY+A++L + GEDILDEAI FTT HL   V+
Sbjct: 128 VSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVA 187

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
           +   +   +E++ H+L+  +RR + R+E+R++L +Y   + H++ LL FAK+DFN+LQ +
Sbjct: 188 SL--DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFL 245

Query: 121 HQKKASEI 128
           H+K+ SEI
Sbjct: 246 HRKELSEI 253

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555

 Score =  133 bits (336), Expect = 4e-38
 Identities = 52/130 (40%), Positives = 82/130 (63%), Gaps = 1/130 (0%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +S + F  FKD +G F  +L  D + +LSLYEA+ LA+ GE+ILDEA VF  +HLK +  
Sbjct: 125 VSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSE 184

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAM 120
              +    AEQ+ H+L +PL R   RLE+ + ++ Y + +  +Q LL  A LD+N++Q++
Sbjct: 185 EK-IGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSV 243

Query: 121 HQKKASEINR 130
           +Q+   E +R
Sbjct: 244 YQRDLRETSR 253

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550

 Score =  132 bits (334), Expect = 9e-38
 Identities = 54/131 (41%), Positives = 92/131 (70%), Gaps = 3/131 (2%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +S ++F KF+D++GKFK SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S   
Sbjct: 123 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 182

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYPRDDLHDQTLLNFAKLDFNILQA 119
           + +      EQ+ H+L   L + V R+E+R+F+  IY ++   +  LL FAKLDFN+LQ 
Sbjct: 183 HLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM 240

Query: 120 MHQKKASEINR 130
           +H+++ ++++R
Sbjct: 241 LHKQELAQVSR 251

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569

 Score =  131 bits (329), Expect = 5e-37
 Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 1   MSCDVFEKFKDDDGK-FKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMV 59
           +S +VF+ FK+  G  FK SL +D  G+L LYEA+ L+  GE+ L  A  F T  L+  V
Sbjct: 142 VSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRV 201

Query: 60  SNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQA 119
              + +      I  +L +P    V    +R F+D Y R    + T+L  AKLDFN++QA
Sbjct: 202 LVDK-DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQA 260

Query: 120 MHQKKASEINR 130
             Q++  E +R
Sbjct: 261 QFQQELKEASR 271

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549

 Score =  127 bits (320), Expect = 1e-35
 Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 3/133 (2%)

Query: 1   MSCDVFEKFKDDDG-KFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMV 59
           +S DVF  FK++ G  FKASL  D +GML LYEA+ L   GED L+ A  F T  L+  +
Sbjct: 118 ISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKL 177

Query: 60  SN--SQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNIL 117
               ++++      IRHSL +PL   +  +E+R+F+D Y R    +  +   AKL+FNI+
Sbjct: 178 DEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNII 237

Query: 118 QAMHQKKASEINR 130
           QA HQ++  +++R
Sbjct: 238 QATHQQELKDLSR 250

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727

 Score =  113 bits (283), Expect = 2e-30
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 21/151 (13%)

Query: 1   MSCDVFEKFKDDDG--KFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSM 58
           +S DVF+ F+ +     F       V GM +LY A+ LA P E+IL  A  F+  +L   
Sbjct: 312 VSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEK 371

Query: 59  VSNSQV------NSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDD------------ 100
               ++            +I  +L +P   ++ R+E+R+++D Y  ++            
Sbjct: 372 REREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMP 431

Query: 101 -LHDQTLLNFAKLDFNILQAMHQKKASEINR 130
            +++   L  AK D+N  QA HQ +     +
Sbjct: 432 YVNNNGYLELAKQDYNNCQAQHQLEWDIFQK 462

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785

 Score =  112 bits (280), Expect = 4e-30
 Identities = 40/149 (26%), Positives = 79/149 (53%), Gaps = 21/149 (14%)

Query: 1   MSCDVFEKFKDDDGKFKASL---TNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKS 57
           +S DV + F+D++G+F   L      V  ML++   +H++ PGE I++EA + T  +L++
Sbjct: 337 VSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRN 396

Query: 58  MVSNS------QVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDD----------- 100
            + N               ++ ++L+ P  +++ RLE+R +++ Y  DD           
Sbjct: 397 ALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMP 456

Query: 101 -LHDQTLLNFAKLDFNILQAMHQKKASEI 128
            + ++  L  AKLDFN +Q++HQ +  ++
Sbjct: 457 YISNEKYLELAKLDFNKVQSIHQTELQDL 485

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score =  107 bits (268), Expect = 2e-28
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 21/149 (14%)

Query: 1   MSCDVFEKFKDDDGKFKAS---LTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKS 57
           +S  +F+ FKD +GKF  S      DV  ML+LY A+ LA PGE+ILDEA  F T +L+ 
Sbjct: 365 VSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLRE 424

Query: 58  MVSNSQV------NSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDD----------- 100
            +  S+           +++I+++L+     +V R+E++ +  +Y  D            
Sbjct: 425 ALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLP 484

Query: 101 -LHDQTLLNFAKLDFNILQAMHQKKASEI 128
            ++++  L   KLDFNI+Q++HQ++   +
Sbjct: 485 YVNNEKFLELGKLDFNIIQSIHQEEMKNV 513

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764

 Score =  104 bits (261), Expect = 1e-27
 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 16/140 (11%)

Query: 1   MSCDVFEKFKDDDGKFKASLTN---DVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKS 57
           +S DV   FKD++G+F +S      ++  +++L+ A+ LA P E  +D+A  F   +L+ 
Sbjct: 313 VSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLRE 372

Query: 58  MVSNSQV-NSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDDL------------HDQ 104
            ++     N+   ++I + +  P   ++ RLE+R ++D Y  + +             + 
Sbjct: 373 ALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNS 432

Query: 105 TLLNFAKLDFNILQAMHQKK 124
             L  AKLDFNI+Q++HQ++
Sbjct: 433 KCLELAKLDFNIVQSLHQEE 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	100.0
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	100.0
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	100.0
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	100.0
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	100.0
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	100.0
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	100.0
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	100.0
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	100.0
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	100.0

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*

Probab=100.00  E-value=1.5e-50  Score=347.88  Aligned_cols=129  Identities=33%  Similarity=0.559  Sum_probs=124.8

Q ss_pred             CChHhhhccccCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCC-CccHHHHHHHhcCCc
Q 032926            1 MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQV-NSTFAEQIRHSLRVP   79 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~-~~~l~~~V~~aL~~P   79 (130)
                      ||||||++|+|++|+|++++.+||+|||+|||||||++|||+|||+|+.||+++|++.+.++ + +++|+++|++||++|
T Consensus       115 vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~-~~~~~l~~~V~~aL~~P  193 (543)
T 2ong_A          115 VAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEG-GVDGDLLTRIAYSLDIP  193 (543)
T ss_dssp             CCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSS-CSSSHHHHHHHHHHHSC
T ss_pred             ccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHhhh
Confidence            89999999999999999999999999999999999999999999999999999999999842 5 788999999999999


Q ss_pred             ccchhhhHHHhhhhhhcCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           80 LRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        80 ~h~~l~Rlear~yI~~Y~~~~~~n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      |||++||+|||+||++|++++++|+.||||||+|||+||++||+||++++|
T Consensus       194 ~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~r  244 (543)
T 2ong_A          194 LHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFR  244 (543)
T ss_dssp             TTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999985

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}

Probab=100.00  E-value=3.8e-50  Score=347.12  Aligned_cols=128  Identities=38%  Similarity=0.568  Sum_probs=122.6

Q ss_pred             CChHhhhccccCCc-cccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCC-CccHHHHHHHhcCC
Q 032926            1 MSCDVFEKFKDDDG-KFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQV-NSTFAEQIRHSLRV   78 (130)
Q Consensus         1 VSsDvf~~F~d~~g-~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~-~~~l~~~V~~aL~~   78 (130)
                      ||||||++|+|++| +|++++.+||+|||+|||||||++|||+|||+|+.||+++|++.+.  ++ +++|+++|++||++
T Consensus       142 Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~--~~~~~~l~~~V~~aL~~  219 (569)
T 2j5c_A          142 VSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVL--VDKDINLLSSIERALEL  219 (569)
T ss_dssp             CCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC------CHHHHHHHHHHHHS
T ss_pred             cCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHh--hcCCCcHHHHHHHHhcC
Confidence            89999999999999 9999999999999999999999999999999999999999999987  45 78899999999999


Q ss_pred             cccchhhhHHHhhhhhhcCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           79 PLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        79 P~h~~l~Rlear~yI~~Y~~~~~~n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      ||||++||+|||+||+.|++++++|+.||||||+|||+||++||+||++++|
T Consensus       220 P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~r  271 (569)
T 2j5c_A          220 PTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASR  271 (569)
T ss_dssp             CGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999985

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*

Probab=100.00  E-value=5.3e-50  Score=345.43  Aligned_cols=129  Identities=40%  Similarity=0.712  Sum_probs=124.1

Q ss_pred             CChHhhhccccCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHhcCCcc
Q 032926            1 MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPL   80 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~~~l~~~V~~aL~~P~   80 (130)
                      ||||||++|+|++|+|++++.+||+|||+|||||||++|||+|||+|+.||+++|++.+.+ .++++|+++|++||++||
T Consensus       125 VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~-~~~~~l~~~V~~aL~~P~  203 (555)
T 3n0f_A          125 VSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEE-KIGKELAEQVNHALELPL  203 (555)
T ss_dssp             CCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHH-HHCHHHHHHHHHHHHSCT
T ss_pred             cChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHhcCCc
Confidence            8999999999999999999999999999999999999999999999999999999997753 457889999999999999


Q ss_pred             cchhhhHHHhhhhhhcCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           81 RRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        81 h~~l~Rlear~yI~~Y~~~~~~n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      ||++||+|||+||++|++++++|+.||||||+|||+||++||+||++++|
T Consensus       204 ~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsr  253 (555)
T 3n0f_A          204 HRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSR  253 (555)
T ss_dssp             TTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999985

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*

Probab=100.00  E-value=5.6e-50  Score=344.88  Aligned_cols=130  Identities=41%  Similarity=0.674  Sum_probs=123.3

Q ss_pred             CChHhhhccccCCc-cccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcC-CC-CccHHHHHHHhcC
Q 032926            1 MSCDVFEKFKDDDG-KFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNS-QV-NSTFAEQIRHSLR   77 (130)
Q Consensus         1 VSsDvf~~F~d~~g-~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~-~~-~~~l~~~V~~aL~   77 (130)
                      ||||||++|+|++| +|++++.+||+|||+||||||+++|||+|||+|+.||+++|++.+.++ .+ +++|+++|++||+
T Consensus       118 Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~  197 (549)
T 1n1b_A          118 ISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLD  197 (549)
T ss_dssp             CCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHH
T ss_pred             cCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhc
Confidence            89999999999999 999999999999999999999999999999999999999999998742 14 7889999999999


Q ss_pred             CcccchhhhHHHhhhhhhcCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           78 VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        78 ~P~h~~l~Rlear~yI~~Y~~~~~~n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      +||||++||+|||+||++|++++++|+.||||||+|||+||++||+||++++|
T Consensus       198 ~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~r  250 (549)
T 1n1b_A          198 LPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSR  250 (549)
T ss_dssp             SCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999985

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*

Probab=100.00  E-value=1.7e-49  Score=342.28  Aligned_cols=128  Identities=50%  Similarity=0.880  Sum_probs=124.7

Q ss_pred             CChHhhhccccCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHhcCCcc
Q 032926            1 MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPL   80 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~~~l~~~V~~aL~~P~   80 (130)
                      ||||||++|+|++|+|++++.+||+|||+|||||||++|||+|||+|+.||+++|++.+.  .++++|+++|++||++||
T Consensus       128 VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~--~~~~~l~~~V~~aL~~P~  205 (554)
T 3g4d_A          128 VSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVA--SLDHPLSEEVSHALKQSI  205 (554)
T ss_dssp             CCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHST--TCCTTHHHHHHHHHHCCT
T ss_pred             CChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh--ccCchHHHHHHHHhCCCc
Confidence            899999999999999999999999999999999999999999999999999999999987  578889999999999999


Q ss_pred             cchhhhHHHhhhhhhcCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           81 RRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        81 h~~l~Rlear~yI~~Y~~~~~~n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      ||++||+||||||++|++++.+|+.||+|||+|||+||++||+||++++|
T Consensus       206 ~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~r  255 (554)
T 3g4d_A          206 RRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICR  255 (554)
T ss_dssp             TTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999985

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*

Probab=100.00  E-value=4.7e-49  Score=339.24  Aligned_cols=128  Identities=43%  Similarity=0.823  Sum_probs=124.4

Q ss_pred             CChHhhhccccCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHhcCCcc
Q 032926            1 MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPL   80 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~~~l~~~V~~aL~~P~   80 (130)
                      ||||||++|+|++|+|++++.+|++|||+||||||+++|||+|||+|+.||+++|++.++  +++++|+++|.+||++||
T Consensus       123 VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~--~~~~~l~~~V~~aL~~P~  200 (550)
T 3m00_A          123 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP--HLKSPLREQVTHALEQCL  200 (550)
T ss_dssp             CCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGG--GCCTTHHHHHHHHHHSCS
T ss_pred             CChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHh--ccCccHHHHHHHHhCCCc
Confidence            899999999999999999999999999999999999999999999999999999999986  567889999999999999


Q ss_pred             cchhhhHHHhhhhh-hcCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           81 RRAVSRLESRYFLD-IYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        81 h~~l~Rlear~yI~-~Y~~~~~~n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      ||++||+||||||+ +|++++.+|+.||+|||+|||+||++||+||++++|
T Consensus       201 ~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~r  251 (550)
T 3m00_A          201 HKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR  251 (550)
T ss_dssp             TTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999999 999999999999999999999999999999999985

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=100.00  E-value=7.1e-47  Score=335.38  Aligned_cols=130  Identities=31%  Similarity=0.580  Sum_probs=122.1

Q ss_pred             CChHhhhccccCCcccccc---chhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhc-CCCCccHHHHHHHhc
Q 032926            1 MSCDVFEKFKDDDGKFKAS---LTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSN-SQVNSTFAEQIRHSL   76 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~---~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~-~~~~~~l~~~V~~aL   76 (130)
                      ||||||++|+|++|+|+++   +.+|++|||+|||||||++|||+|||+|+.||+++|++.+.+ +.++++|+++|++||
T Consensus       313 VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL  392 (764)
T 3p5p_A          313 VSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVV  392 (764)
T ss_dssp             CCGGGGGGGBCTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHH
T ss_pred             ccHhHHHhhhcCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Confidence            8999999999999999974   689999999999999999999999999999999999998864 235788999999999


Q ss_pred             CCcccchhhhHHHhhhhhhcCCCCcc------------cHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           77 RVPLRRAVSRLESRYFLDIYPRDDLH------------DQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        77 ~~P~h~~l~Rlear~yI~~Y~~~~~~------------n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      ++|||+++||+|||+||++|++++.|            |+.||||||+|||+||++||+||++++|
T Consensus       393 ~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~r  458 (764)
T 3p5p_A          393 EYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTR  458 (764)
T ss_dssp             HSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchhccchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhce
Confidence            99999999999999999999988764            9999999999999999999999999985

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=100.00  E-value=1.1e-46  Score=334.89  Aligned_cols=130  Identities=32%  Similarity=0.621  Sum_probs=121.7

Q ss_pred             CChHhhhccccCCccccccc---hhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcC------CCCccHHHH
Q 032926            1 MSCDVFEKFKDDDGKFKASL---TNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNS------QVNSTFAEQ   71 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~---~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~------~~~~~l~~~   71 (130)
                      ||||||++|+|++|+|++++   .+|++|||+||||||+++|||+|||+|+.||+++|++.+.++      .++++|+++
T Consensus       337 VS~dvf~~F~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~e  416 (785)
T 3s9v_A          337 VSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGE  416 (785)
T ss_dssp             CCGGGGGGGBCTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHH
T ss_pred             CCHHHHHHHHhcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHH
Confidence            89999999999999999865   699999999999999999999999999999999999987642      256789999


Q ss_pred             HHHhcCCcccchhhhHHHhhhhhhcCCCCcc------------cHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           72 IRHSLRVPLRRAVSRLESRYFLDIYPRDDLH------------DQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        72 V~~aL~~P~h~~l~Rlear~yI~~Y~~~~~~------------n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      |++||++|||+++||+|||+||++|++++.|            |+.||||||+|||+||++||+||++++|
T Consensus       417 V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsr  487 (785)
T 3s9v_A          417 VEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRR  487 (785)
T ss_dssp             HHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCccccCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999988764            9999999999999999999999999985

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=100.00  E-value=2e-46  Score=334.43  Aligned_cols=130  Identities=36%  Similarity=0.671  Sum_probs=118.9

Q ss_pred             CChHhhhccccCCccccccc---hhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCC-C-----CccHHHH
Q 032926            1 MSCDVFEKFKDDDGKFKASL---TNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQ-V-----NSTFAEQ   71 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~---~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~-~-----~~~l~~~   71 (130)
                      ||||||++|+|++|+|++++   .+|++|||+|||||||++|||+|||+|+.||+++|++.+.++. +     +++|+++
T Consensus       365 VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~e  444 (817)
T 3sdr_A          365 VSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQE  444 (817)
T ss_dssp             CCGGGGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHH
T ss_pred             ccHhHHHHHhhcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHH
Confidence            89999999999999999854   6999999999999999999999999999999999999886422 2     3679999


Q ss_pred             HHHhcCCcccchhhhHHHhhhhhhcCCCCcc------------cHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           72 IRHSLRVPLRRAVSRLESRYFLDIYPRDDLH------------DQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        72 V~~aL~~P~h~~l~Rlear~yI~~Y~~~~~~------------n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      |++||++|||+++||+|||+||++|++++.|            |+.||||||+|||+||++||+||++++|
T Consensus       445 V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsr  515 (817)
T 3sdr_A          445 IKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTS  515 (817)
T ss_dssp             HHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchhccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhce
Confidence            9999999999999999999999999988764            9999999999999999999999999985

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=100.00  E-value=1.5e-44  Score=318.89  Aligned_cols=129  Identities=30%  Similarity=0.525  Sum_probs=118.8

Q ss_pred             CChHhhhccccCCcccccc---chhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCC------CccHHHH
Q 032926            1 MSCDVFEKFKDDDGKFKAS---LTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQV------NSTFAEQ   71 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~---~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~------~~~l~~~   71 (130)
                      ||||||++|+ ++|+|++.   ..+|++|||+||||||+++|||+|||+|+.||+++|++.+.++..      +++|+++
T Consensus       312 VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~  390 (727)
T 3pya_A          312 VSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGE  390 (727)
T ss_dssp             CCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHH
T ss_pred             CCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHH
Confidence            8999999999 88999853   368999999999999999999999999999999999998865333      4789999


Q ss_pred             HHHhcCCcccchhhhHHHhhhhhhcCCCCc-------------ccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926           72 IRHSLRVPLRRAVSRLESRYFLDIYPRDDL-------------HDQTLLNFAKLDFNILQAMHQKKASEINR  130 (130)
Q Consensus        72 V~~aL~~P~h~~l~Rlear~yI~~Y~~~~~-------------~n~~lLelAklDFn~~Qs~hq~EL~~lsr  130 (130)
                      |++||++||||++||+|||+||+.|+++++             +|+.||||||+|||+||++||+||++++|
T Consensus       391 V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsr  462 (727)
T 3pya_A          391 IGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQK  462 (727)
T ss_dssp             HHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhhe
Confidence            999999999999999999999999997654             59999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1n1ba1	207	a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha	3e-35
d5easa1	197	a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase	1e-33
d5easa2	328	a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase	5e-07
d1n1ba2	328	a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth	9e-07

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  118 bits (297), Expect = 3e-35
 Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 1   MSCDVFEKFKDDDG-KFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMV 59
           +S DVF  FK++ G  FKASL  D +GML LYEA+ L   GED L+ A  F T  L+  +
Sbjct: 104 ISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKL 163

Query: 60  S--NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDD 100
               ++++      IRHSL +PL   +  +E+R+F+D Y R  
Sbjct: 164 DEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRP 206

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  114 bits (286), Expect = 1e-33
 Identities = 42/101 (41%), Positives = 69/101 (68%), Gaps = 3/101 (2%)

Query: 1   MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVS 60
           +S ++F KF+D++GKFK SL +DV G+L+LYEA+H+    +DIL++A+ F+T HL+S   
Sbjct: 98  ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 157

Query: 61  NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYPRDD 100
           +    S   EQ+ H+L   L + V R+E+R+F+  IY ++ 
Sbjct: 158 HL--KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 196

>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 13/28 (46%), Positives = 23/28 (82%)

Query: 103 DQTLLNFAKLDFNILQAMHQKKASEINR 130
           +  LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 2   NNVLLRFAKLDFNLLQMLHKQELAQVSR 29

>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score = 44.1 bits (104), Expect = 9e-07
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 104 QTLLNFAKLDFNILQAMHQKKASEINR 130
             +   AKL+FNI+QA HQ++  +++R
Sbjct: 3   PLIFELAKLNFNIIQATHQQELKDLSR 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1n1ba1	207	(+)-bornyl diphosphate synthase {Garden sage (Salv	100.0
d5easa1	197	5-Epi-aristolochene synthase {Tobacco (Nicotiana t	100.0

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=6.9e-40  Score=251.13  Aligned_cols=100  Identities=42%  Similarity=0.701  Sum_probs=93.3

Q ss_pred             CChHhhhccccCCc-cccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcC--CCCccHHHHHHHhcC
Q 032926            1 MSCDVFEKFKDDDG-KFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNS--QVNSTFAEQIRHSLR   77 (130)
Q Consensus         1 VSsDvf~~F~d~~g-~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~--~~~~~l~~~V~~aL~   77 (130)
                      ||||||++|+|++| +|++++.+||+|||+||||||++++||+|||+|+.||+++|+++++++  .++++|+++|.+||+
T Consensus       104 VS~dvF~~F~d~~g~~fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~l~~~~~~~~~~l~~~V~~AL~  183 (207)
T d1n1ba1         104 ISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLD  183 (207)
T ss_dssp             CCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHH
T ss_pred             CCHHHHHHhccCCCCchhhhHHHhHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhC
Confidence            89999999999999 999999999999999999999999999999999999999999998643  357899999999999


Q ss_pred             CcccchhhhHHHhhhhhhcCCCC
Q 032926           78 VPLRRAVSRLESRYFLDIYPRDD  100 (130)
Q Consensus        78 ~P~h~~l~Rlear~yI~~Y~~~~  100 (130)
                      +||||+|||+||||||+.|++++
T Consensus       184 ~P~~~~l~rleaR~yI~~Ye~~~  206 (207)
T d1n1ba1         184 LPLHWRIQSVEARWFIDAYARRP  206 (207)
T ss_dssp             SCGGGCCTTTSHHHHHHHHHHCT
T ss_pred             CCccCCCcHHHHHHhHHHhCCCC
Confidence            99999999999999999999875

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=6.9e-39  Score=243.96  Aligned_cols=98  Identities=43%  Similarity=0.823  Sum_probs=94.3

Q ss_pred             CChHhhhccccCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHhcCCcc
Q 032926            1 MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPL   80 (130)
Q Consensus         1 VSsDvf~~F~d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~~~l~~~V~~aL~~P~   80 (130)
                      ||||||++|+|++|+|++++.+||+|||+||||||++++||+||++|+.||+++|++.++  +++++|+.+|.+||++|+
T Consensus        98 Vs~dvF~~Fkd~~G~f~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~--~~~~~l~~~V~~aL~~P~  175 (197)
T d5easa1          98 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP--HLKSPLREQVTHALEQCL  175 (197)
T ss_dssp             CCGGGGGGGBCTTSSBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGG--GCCTTHHHHHHHHHHSCS
T ss_pred             cCHHHHhhhccCCCCcccchhHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHh--hcCccHHHHHHHHhCCCc
Confidence            899999999999999999999999999999999999999999999999999999999988  678999999999999999


Q ss_pred             cchhhhHHHhhhhh-hcCCCC
Q 032926           81 RRAVSRLESRYFLD-IYPRDD  100 (130)
Q Consensus        81 h~~l~Rlear~yI~-~Y~~~~  100 (130)
                      ||++||+||||||+ .|++++
T Consensus       176 h~~l~rleaR~yI~~~Ye~e~  196 (197)
T d5easa1         176 HKGVPRVETRFFISSIYDKEQ  196 (197)
T ss_dssp             TTSCHHHHHHHHHHHTGGGCT
T ss_pred             cCCCcHHHHHHHHHHHhcccC
Confidence            99999999999995 688775