Citrus Sinensis ID: 032940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDKRNKIYIWTKSYIACF
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccHHHHHHHcHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEHEEcccccccEEEcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccEEEEcccccccc
Coil and Loop (DISEMBL)
mssrrnaiprrahkeraqpqsrkkfgllekhKDYVVRAKAYRKKEETIRRLKEKaafrnpdeFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLqserngrdkrnKIYIWTKSYIACF
Flexible Loop (DISEMBL)
mssrrnaiprrahkeraqpqsrkkfgllekhkdyvvrakayrkkeetirrlkekaafrnpdefylKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQklqserngrdkrnkiyiwtksyiacf
Low Complexity Region (SEG)
MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDKRNKIYIWTKSYIACF
Disordered region (IsUnstruct)
**************************LLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQ*******KRNKIYIWTKSYIAC*
Disordered Region (DISOPRED)
************************FGLLEKHKDYVVRAKAYRKKEE***********RNPDEFYLKMIK**********************ILMKTQDIGYILQ***************YIWT*S*****
Disordered Region (DISEMBL)
********************SRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDKRNKIYIWTKSYIACF
Disordered Region (DISPRO)
*****************QPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDKRNKIYIWTKSYIACF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDKRNKIYIWTKSYIACF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q8S1Z1	229	Probable U3 small nucleol	yes	no	0.846	0.480	0.763	3e-45
Q9M223	228	Probable U3 small nucleol	yes	no	0.884	0.504	0.669	4e-41
Q55C50	250	Probable U3 small nucleol	yes	no	0.838	0.436	0.525	3e-23
Q9Y3A2	253	Probable U3 small nucleol	yes	no	0.715	0.367	0.526	9e-21
Q9CZJ1	253	Probable U3 small nucleol	yes	no	0.707	0.363	0.532	1e-20
Q8R5K5	253	Probable U3 small nucleol	no	no	0.715	0.367	0.516	6e-20
Q10106	249	Probable U3 small nucleol	yes	no	0.838	0.437	0.467	2e-19
Q9W3C0	237	Probable U3 small nucleol	yes	no	0.846	0.464	0.428	3e-17
P34247	250	U3 small nucleolar RNA-as	yes	no	0.723	0.376	0.396	1e-13
A6ZZL7	250	U3 small nucleolar RNA-as	N/A	no	0.723	0.376	0.396	1e-13

>sp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 101/110 (91%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAI RRAHKERAQP+SRKKFGLLEKHKDY+VRAKA+ +KEETIR+LKEKA+FRNP
Sbjct: 1   MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           DEFY KMI +K VDG+HR + EANKYT++EL+L+KT+D+GYILQ +QSE+
Sbjct: 61  DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEK 110

Involved in nucleolar processing of pre-18S ribosomal RNA.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M223|UTP11_ARATH Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana GN=At3g60360 PE=1 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 77/115 (66%), Positives = 97/115 (84%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPR AHKER+QP++RK+FG+LEKHKDY++RA AY KK+ET++ L++KAAF+NP
Sbjct: 1   MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDK 115
           DEF  KMI +K VDG HR + E NKY+ EEL++MKTQDIGY+ QK QSE+N  DK
Sbjct: 61  DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDK 115

Involved in nucleolar processing of pre-18S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55C50|UTP11_DICDI Probable U3 small nucleolar RNA-associated protein 11 OS=Dictyostelium discoideum GN=utp11 PE=3 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 84/120 (70%), Gaps = 11/120 (9%)

Query: 1   MSSR--RNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFR 58
           MSS   R  +P+RA +ER QP+S KK G LE+ KDYV RAK Y  K +T+++LK +AAF+
Sbjct: 1   MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFK 60

Query: 59  NPDEFYLKMIKTKIVDGVHRLESEANKYT--QEELILMKTQDIGYILQKLQSERNGRDKR 116
           NPDEF  KMI +K+VDGVH   SE +K +  +E++I +KTQDI Y    LQS+R   DK+
Sbjct: 61  NPDEFNYKMISSKLVDGVH---SEISKTSLKKEQIIDIKTQDILY----LQSKRRADDKK 113

Involved in nucleolar processing of pre-18S ribosomal RNA.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9Y3A2|UTP11_HUMAN Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens GN=UTP11L PE=1 SV=2

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 67/93 (72%)

Query: 10  RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
           +R H+ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM +
Sbjct: 13  QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query: 70  TKIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
            K+ DGVH ++    + T E+L LM+TQD+ YI
Sbjct: 73  VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYI 105

Involved in nucleolar processing of pre-18S ribosomal RNA.

Homo sapiens (taxid: 9606)

>sp|Q9CZJ1|UTP11_MOUSE Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 65/92 (70%)

Query: 11  RAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKT 70
           R H+ER+QP  RK+ GLLEK KDY +RA  Y KK++ +R L++KA  +NPDEFY KM + 
Sbjct: 14  REHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTRA 73

Query: 71  KIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
           K+ DGVH  +    + T E+L LM+TQDI YI
Sbjct: 74  KLQDGVHIFKENKEEVTAEQLKLMRTQDIKYI 105

Involved in nucleolar processing of pre-18S ribosomal RNA.

Mus musculus (taxid: 10090)

>sp|Q8R5K5|UTP11_RAT Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus GN=Utp11l PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 67/93 (72%)

Query: 10  RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
           +R ++ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM +
Sbjct: 13  QREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query: 70  TKIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
            K+ DGVH ++    + T E+L LM+TQD+ YI
Sbjct: 73  VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYI 105

Involved in nucleolar processing of pre-18S ribosomal RNA.

Rattus norvegicus (taxid: 10116)

>sp|Q10106|UTP11_SCHPO Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18G6.06 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 72/109 (66%)

Query: 2   SSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPD 61
           SS +NA  R+ H+ERAQP  R+K+GLLEK KDY  RA+ Y+ K++ ++RL+EKA  RNPD
Sbjct: 3   SSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPD 62

Query: 62  EFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           EFY +M   K  +GV   + E +    + + ++KTQDIG+I      ER
Sbjct: 63  EFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVER 111

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9W3C0|UTP11_DROME Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila melanogaster GN=CG1789 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 2/112 (1%)

Query: 1   MSSRRNAIP--RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFR 58
           MSS +NA    ++ H+ER QP+SR+  G LEK KDY  RA   +KK++T++ L  +A  +
Sbjct: 1   MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNK 60

Query: 59  NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           NPDEFY  MI +K+ +  H  +   +++T E+L LM+TQD+ Y++ K   ER
Sbjct: 61  NPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMER 112

Involved in nucleolar processing of pre-18S ribosomal RNA.

Drosophila melanogaster (taxid: 7227)

>sp|P34247|UTP11_YEAST U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP11 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 7/101 (6%)

Query: 8   IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
           + ++ H+ER+Q  SR ++G LEKHKDYV RA+ + +K+ T++ L+EKA  RNPDE+Y  M
Sbjct: 8   VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAM 67

Query: 68  ------IKTKIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
                  K  ++   H  E E    + +++ L+KTQD  Y+
Sbjct: 68  HSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYV 107

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6ZZL7|UTP11_YEAS7 U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain YJM789) GN=UTP11 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 7/101 (6%)

Query: 8   IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
           + ++ H+ER+Q  SR ++G LEKHKDYV RA+ + +K+ T++ L+EKA  RNPDE+Y  M
Sbjct: 8   VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAM 67

Query: 68  ------IKTKIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
                  K  ++   H  E E    + +++ L+KTQD  Y+
Sbjct: 68  HSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYV 107

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
255553233	231	U3 small nucleolar RNA-associated protei	0.846	0.476	0.836	5e-48
224137520	229	predicted protein [Populus trichocarpa]	0.846	0.480	0.845	2e-47
356524892	229	PREDICTED: probable U3 small nucleolar R	0.853	0.484	0.801	1e-45
356512107	229	PREDICTED: probable U3 small nucleolar R	0.853	0.484	0.801	5e-45
449470253	228	PREDICTED: probable U3 small nucleolar R	0.846	0.482	0.763	8e-44
388510862	229	unknown [Lotus japonicus]	0.846	0.480	0.8	2e-43
115440601	229	Os01g0810000 [Oryza sativa Japonica Grou	0.846	0.480	0.763	2e-43
147857564	229	hypothetical protein VITISV_023155 [Viti	0.846	0.480	0.781	2e-43
225439057	229	PREDICTED: probable U3 small nucleolar R	0.846	0.480	0.781	2e-43
413952155	215	hypothetical protein ZEAMMB73_323251 [Ze	0.846	0.511	0.736	3e-41

>gi|255553233|ref|XP_002517659.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi|223543291|gb|EEF44823.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 104/110 (94%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPR+AHKER+QPQSRKK+GLLEKHKDY+VRAKA+ KKEE ++RLKEKAAFRNP
Sbjct: 1   MSSLRNAIPRKAHKERSQPQSRKKYGLLEKHKDYIVRAKAFHKKEEALQRLKEKAAFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           DEFY KMIKT+ VDGVHR ES+ANKYT+EEL+LMKTQDIGYILQKLQSE+
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYTEEELLLMKTQDIGYILQKLQSEK 110

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137520|ref|XP_002322578.1| predicted protein [Populus trichocarpa] gi|222867208|gb|EEF04339.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 101/110 (91%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPR+AHKERAQPQ+RKKFGLLEKHKDYV RAKA+ KKEET+RRLKEKAA RNP
Sbjct: 1   MSSLRNAIPRKAHKERAQPQARKKFGLLEKHKDYVARAKAFHKKEETLRRLKEKAASRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           DEFY  MIK+K VDGVHR +SEANKYTQEEL+LMKTQDIGYILQK QSE+
Sbjct: 61  DEFYFGMIKSKTVDGVHRPQSEANKYTQEELLLMKTQDIGYILQKAQSEK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524892|ref|XP_003531062.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Glycine max]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 102/111 (91%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPRRAHKER+QP SRKKFGLLEKHKDY+ RAKA+ KKE+T+R+L+EKAA RN 
Sbjct: 1   MSSLRNAIPRRAHKERSQPSSRKKFGLLEKHKDYIQRAKAFHKKEDTLRKLREKAANRNE 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERN 111
           DEFY KM++TK VDGVH+ ESEANKYTQEEL+LMKTQD+GYILQK+QSERN
Sbjct: 61  DEFYFKMVRTKTVDGVHKPESEANKYTQEELMLMKTQDMGYILQKIQSERN 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512107|ref|XP_003524762.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Glycine max]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 101/111 (90%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPRRAHKER+QP SRKKFGLLEKHKDYV RAKA+ KKE T+R+L+EKAA RN 
Sbjct: 1   MSSLRNAIPRRAHKERSQPSSRKKFGLLEKHKDYVQRAKAFHKKEGTLRKLREKAANRNE 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERN 111
           DEFY KM++TK VDGVH+ ESEANKYTQ+EL+LMKTQD+GYILQK+QSERN
Sbjct: 61  DEFYFKMVRTKTVDGVHKPESEANKYTQQELMLMKTQDMGYILQKIQSERN 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470253|ref|XP_004152832.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Cucumis sativus] gi|449477691|ref|XP_004155095.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Cucumis sativus]

 Score =  181 bits (459), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 99/110 (90%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNA+PRR +KERAQPQSRKKFGLLEKHKDY+ RAKA+ KKE+T+R+LKEKAAF+NP
Sbjct: 1   MSSLRNAVPRRPYKERAQPQSRKKFGLLEKHKDYIQRAKAFHKKEDTLRKLKEKAAFKNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           DEFY KMI+T+ VDGVH+ ES  NKYT E+L+LMKTQD GYILQK+QSE+
Sbjct: 61  DEFYFKMIRTRTVDGVHKPESHVNKYTAEQLMLMKTQDAGYILQKMQSEK 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510862|gb|AFK43497.1| unknown [Lotus japonicus]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 98/110 (89%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNA+PRRAHKERAQP SRKKFG LEKHKDYV RAKA+ KKEET+R L+EKAA RN 
Sbjct: 1   MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQ 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           DEFY KMI+T+  DGVHR ESEANKYTQ+EL+LMKTQD+GY+LQKLQSER
Sbjct: 61  DEFYFKMIRTRTEDGVHRPESEANKYTQDELMLMKTQDLGYVLQKLQSER 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115440601|ref|NP_001044580.1| Os01g0810000 [Oryza sativa Japonica Group] gi|73621302|sp|Q8S1Z1.2|UTP11_ORYSJ RecName: Full=Probable U3 small nucleolar RNA-associated protein 11; Short=U3 snoRNA-associated protein 11 gi|55297663|dbj|BAD68234.1| putative CGI-94 protein [Oryza sativa Japonica Group] gi|55297664|dbj|BAD68235.1| putative CGI-94 protein [Oryza sativa Japonica Group] gi|113534111|dbj|BAF06494.1| Os01g0810000 [Oryza sativa Japonica Group] gi|215717047|dbj|BAG95410.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767926|dbj|BAH00155.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189251|gb|EEC71678.1| hypothetical protein OsI_04152 [Oryza sativa Indica Group] gi|222619423|gb|EEE55555.1| hypothetical protein OsJ_03819 [Oryza sativa Japonica Group]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 101/110 (91%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAI RRAHKERAQP+SRKKFGLLEKHKDY+VRAKA+ +KEETIR+LKEKA+FRNP
Sbjct: 1   MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           DEFY KMI +K VDG+HR + EANKYT++EL+L+KT+D+GYILQ +QSE+
Sbjct: 61  DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEK 110

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857564|emb|CAN82884.1| hypothetical protein VITISV_023155 [Vitis vinifera]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 100/110 (90%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAI RRA+KERAQP  RKKFGLLEKHKDYVVRA+A+ KKEE +++LKEKAAFRNP
Sbjct: 1   MSSFRNAISRRAYKERAQPHLRKKFGLLEKHKDYVVRAQAFHKKEEALQKLKEKAAFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           DEFY KMIKT+ VDGVHR ES+ANKY+ EEL+LMKTQD+GY+LQK+QSE+
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYSPEELMLMKTQDMGYVLQKVQSEK 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439057|ref|XP_002265743.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11 [Vitis vinifera] gi|239056174|emb|CAQ58608.1| unknown gene [Vitis vinifera] gi|239056194|emb|CAQ58632.1| unknown protein / putative CGI-94 protein [Vitis vinifera] gi|296085811|emb|CBI31135.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 100/110 (90%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAI RRA+KERAQP  RKKFGLLEKHKDYVVRA+A+ KKEE +++LKEKAAFRNP
Sbjct: 1   MSSFRNAISRRAYKERAQPHLRKKFGLLEKHKDYVVRAQAFHKKEEALQKLKEKAAFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           DEFY KMIKT+ VDGVHR ES+ANKY+ EEL+LMKTQD+GY+LQK+QSE+
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYSPEELMLMKTQDMGYVLQKVQSEK 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413952155|gb|AFW84804.1| hypothetical protein ZEAMMB73_323251 [Zea mays]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 96/110 (87%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPRRAHKERAQP++RKKFGLLEKHKDYVVRA+AY  KE TI +LKEKAAFRNP
Sbjct: 1   MSSLRNAIPRRAHKERAQPEARKKFGLLEKHKDYVVRARAYHIKEATIAKLKEKAAFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
           DEFY KMI ++ V G+HR + E NKYT+EEL+L+K +D+GYILQ +QSE+
Sbjct: 61  DEFYFKMINSRTVGGIHRPKPEDNKYTEEELLLLKNKDMGYILQSVQSEK 110

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2103356	228	EDA14 "EMBRYO SAC DEVELOPMENT	0.884	0.504	0.669	2.3e-39
UNIPROTKB|E2QY01	253	UTP11L "Uncharacterized protei	0.769	0.395	0.51	5.6e-25
UNIPROTKB|E1BU24	253	UTP11L "Uncharacterized protei	0.769	0.395	0.52	5.3e-24
DICTYBASE|DDB_G0270230	250	utp11 "U3 snoRNP protein" [Dic	0.853	0.444	0.516	6.8e-24
UNIPROTKB|F1N165	253	UTP11L "Uncharacterized protei	0.769	0.395	0.53	4.8e-23
UNIPROTKB|B4DJC6	148	UTP11L "Probable U3 small nucl	0.769	0.675	0.51	1.3e-22
UNIPROTKB|Q9Y3A2	253	UTP11L "Probable U3 small nucl	0.769	0.395	0.51	1.3e-22
UNIPROTKB|F1SV29	253	UTP11L "Uncharacterized protei	0.769	0.395	0.51	1.6e-22
MGI|MGI:1914455	253	Utp11l "UTP11-like, U3 small n	0.769	0.395	0.51	1.6e-22
RGD|621412	253	Utp11l "UTP11-like, U3 small n	0.769	0.395	0.5	5.5e-22

TAIR|locus:2103356 EDA14 "EMBRYO SAC DEVELOPMENT ARREST 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 77/115 (66%), Positives = 97/115 (84%)

Query:     1 MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
             MSS RNAIPR AHKER+QP++RK+FG+LEKHKDY++RA AY KK+ET++ L++KAAF+NP
Sbjct:     1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60

Query:    61 DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDK 115
             DEF  KMI +K VDG HR + E NKY+ EEL++MKTQDIGY+ QK QSE+N  DK
Sbjct:    61 DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDK 115

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0009561 "megagametogenesis" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000741 "karyogamy" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

UNIPROTKB|E2QY01 UTP11L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 51/100 (51%), Positives = 70/100 (70%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  YRKK++ +R L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQDYLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSE 109
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E
Sbjct:    73 VKLQDGVHVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAE 112

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|E1BU24 UTP11L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 52/100 (52%), Positives = 73/100 (73%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ERAQP  RKK GLLEK KDY +RA+ Y KK+  +R L++KA  +NPDEFY KMI+
Sbjct:    13 QRQHRERAQPACRKKLGLLEKKKDYRLRAQDYHKKQNALRALQKKALDKNPDEFYFKMIR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSE 109
             T++ DGVH ++   ++ T E++ LMKTQD+ Y+  K  +E
Sbjct:    73 TQLKDGVHVIKQPEDEVTPEQMKLMKTQDLKYVEMKRVAE 112

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

DICTYBASE|DDB_G0270230 utp11 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 61/118 (51%), Positives = 80/118 (67%)

Query:     1 MSSR--RNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFR 58
             MSS   R  +P+RA +ER QP+S KK G LE+ KDYV RAK Y  K +T+++LK +AAF+
Sbjct:     1 MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFK 60

Query:    59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDKR 116
             NPDEF  KMI +K+VDGVH  E       +E++I +KTQDI Y    LQS+R   DK+
Sbjct:    61 NPDEFNYKMISSKLVDGVHS-EISKTSLKKEQIIDIKTQDILY----LQSKRRADDKK 113

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030515 "snoRNA binding" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|F1N165 UTP11L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  YRKK+E +R L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSE 109
              K+ DGVH ++    + T E+L LM+TQDI YI  K  +E
Sbjct:    73 VKLQDGVHVIKETKEEVTPEQLKLMRTQDIKYIEMKRVAE 112

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|B4DJC6 UTP11L "Probable U3 small nucleolar RNA-associated protein 11" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/100 (51%), Positives = 70/100 (70%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSE 109
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAE 112

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

UNIPROTKB|Q9Y3A2 UTP11L "Probable U3 small nucleolar RNA-associated protein 11" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/100 (51%), Positives = 70/100 (70%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSE 109
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAE 112

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

UNIPROTKB|F1SV29 UTP11L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 51/100 (51%), Positives = 69/100 (69%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  YR K+E +R L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPSFRKHLGLLEKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSE 109
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E
Sbjct:    73 VKLQDGVHVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAE 112

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

MGI|MGI:1914455 Utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)" [Mus musculus (taxid:10090)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 51/100 (51%), Positives = 69/100 (69%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK+ GLLEK KDY +RA  Y KK++ +R L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSE 109
              K+ DGVH  +    + T E+L LM+TQDI YI  K  +E
Sbjct:    73 AKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAE 112

GO:0003674 "molecular_function" evidence=ND

GO:0005615 "extracellular space" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007399 "nervous system development" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=ISO

RGD|621412 Utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 50/100 (50%), Positives = 70/100 (70%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R ++ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM +
Sbjct:    13 QREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSE 109
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAE 112

GO:0005615 "extracellular space" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S1Z1	UTP11_ORYSJ	No assigned EC number	0.7636	0.8461	0.4803	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
pfam03998	239	pfam03998, Utp11, Utp11 protein	4e-38
COG5223	240	COG5223, COG5223, Uncharacterized conserved protei	6e-17

>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein

 Score =  128 bits (323), Expect = 4e-38
 Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 1/103 (0%)

Query: 10  RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
           RR H+ER+QP+SRK  GLLEK KDY +RAK Y KKE+T++ LKEKAA RNPDEFY  MI 
Sbjct: 1   RRQHRERSQPESRKHLGLLEKKKDYKLRAKDYHKKEKTLKALKEKAAERNPDEFYFGMIS 60

Query: 70  TKIVDGVHRLESEANK-YTQEELILMKTQDIGYILQKLQSERN 111
           +K  DGVH L+ E  +  ++E++ L+KTQD+ Y+  K Q+E  
Sbjct: 61  SKTDDGVHILKREEKEVLSKEQVKLLKTQDLNYVRTKRQAEAK 103

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 239

>gnl|CDD|227548 COG5223, COG5223, Uncharacterized conserved protein [Function unknown]

 Score = 73.5 bits (180), Expect = 6e-17
 Identities = 41/114 (35%), Positives = 60/114 (52%)

Query: 2   SSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPD 61
                   R+ H+ER QP+ R+K+G LEK KDYV RA+   KK++ +++L+EKA  RNPD
Sbjct: 3   LGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPD 62

Query: 62  EFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDK 115
           E+Y  M   K   GV  +  E      +   ++KTQD      + + ER     
Sbjct: 63  EYYHGMHSVKTDGGVSSIYREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMP 116

Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
PF03998	243	Utp11: Utp11 protein; InterPro: IPR007144 A large	100.0
KOG3237	250	consensus Uncharacterized conserved protein [Funct	100.0
COG5223	240	Uncharacterized conserved protein [Function unknow	100.0

>PF03998 Utp11: Utp11 protein; InterPro: IPR007144 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=100.00  E-value=1.9e-53  Score=344.94  Aligned_cols=117  Identities=50%  Similarity=0.743  Sum_probs=113.2

Q ss_pred             cccccccCCchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhhccccC-Cccccccc-cCCCC
Q 032940           10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVD-GVHRLESE-ANKYT   87 (130)
Q Consensus        10 rr~HrER~Qp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lk~KA~~rNpDEFyf~M~~~k~~~-Gvh~~~~~-~~~~t   87 (130)
                      ||+|+|||||++|++||||||||||++||+|||+|+++|+.|++||++||||||||+|+|+++.+ |+|+..++ ++.+|
T Consensus         1 rr~HrERsQP~~R~~lGlLEKkKDY~lRA~dy~~K~~~Lk~Lr~KA~~RNpDEFyf~M~~sk~~~~G~h~~~~~~~~~~~   80 (243)
T PF03998_consen    1 RRNHRERSQPASRKKLGLLEKKKDYKLRAKDYHKKEAKLKRLREKAANRNPDEFYFGMINSKTDDDGVHVEKREENEELS   80 (243)
T ss_pred             CCcccccCChHHhhhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHhcccCCCCeeccCccccccCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999 99999887 78999


Q ss_pred             HHHHHHhhhhcHHHHHHHHHHHHhhHHHHHhhhhhcccc
Q 032940           88 QEELILMKTQDIGYILQKLQSERNGRDKRNKIYIWTKSY  126 (130)
Q Consensus        88 ~e~~kl~kTQDl~Yv~~~~~~e~kKiekL~~~~~~~~~~  126 (130)
                      +|+++||+|||++||+++++++.+|||+|++.++++.+.
T Consensus        81 ~e~~~llkTQD~~Yv~~~~~~e~kKIekL~~~l~~~~~~  119 (243)
T PF03998_consen   81 KEQVKLLKTQDLNYVRTKRQIERKKIEKLQSELHLLDGK  119 (243)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            999999999999999999999999999999999888754

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp11, a large ribonuclear protein that associates with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG3237 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.2e-52  Score=342.44  Aligned_cols=124  Identities=48%  Similarity=0.697  Sum_probs=122.2

Q ss_pred             CCccccccc--cccccccCCchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhhccccCCccc
Q 032940            1 MSSRRNAIP--RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHR   78 (130)
Q Consensus         1 MSSlrna~k--rr~HrER~Qp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lk~KA~~rNpDEFyf~M~~~k~~~Gvh~   78 (130)
                      ||||+||++  +++|||||||.+|++||+|||||||++||.|||+||++|+.|+++|+++|||||||+|+|+++.||+|+
T Consensus         1 mss~~~a~ks~rk~HRERsQP~~Rrk~G~LEKkKDY~~RA~dy~kKq~tLK~LrekA~eKNpDEfyh~M~~~K~~dG~hi   80 (250)
T KOG3237|consen    1 MSSFVNASKSRRKVHRERSQPEARRKYGFLEKKKDYKKRAQDYHKKQDTLKKLREKALEKNPDEFYHKMHNSKTKDGRHI   80 (250)
T ss_pred             CcchhhcchhhhhHHHhhcChhHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhccccCCccc
Confidence            999999999  899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHhhhhcHHHHHHHHHHHHhhHHHHHhhhhhcc
Q 032940           79 LESEANKYTQEELILMKTQDIGYILQKLQSERNGRDKRNKIYIWTK  124 (130)
Q Consensus        79 ~~~~~~~~t~e~~kl~kTQDl~Yv~~~~~~e~kKiekL~~~~~~~~  124 (130)
                      +..+.+++|+|||+||+|||++||.+++++|++|||+|.+.|++++
T Consensus        81 ~k~e~~e~t~eqlklmktQDi~YV~~kr~~ErkKIerlka~L~~~~  126 (250)
T KOG3237|consen   81 EKDEVDEPTMEQLKLMKTQDIGYVRMKRQRERKKIERLKAQLHCVD  126 (250)
T ss_pred             cccccccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccccccc
Confidence            9988899999999999999999999999999999999999999887

>COG5223 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.5e-38  Score=254.39  Aligned_cols=125  Identities=35%  Similarity=0.470  Sum_probs=117.7

Q ss_pred             CCc-cccccccccccccCCchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhhccccCCcccc
Q 032940            1 MSS-RRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRL   79 (130)
Q Consensus         1 MSS-lrna~krr~HrER~Qp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lk~KA~~rNpDEFyf~M~~~k~~~Gvh~~   79 (130)
                      ||+ |.++-+|++|+||+||.+|++||+|||+|||++||.|||+|+.+|+.||++|..||||||||+|.+.++.+||.++
T Consensus         1 Ms~~f~~v~qrK~hrERtQp~~RrkyG~LEK~KDyvkRaqd~~~kq~~lk~lrEka~ernpdEyyh~mhs~Ktd~gv~~~   80 (240)
T COG5223           1 MSLGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPDEYYHGMHSVKTDGGVSSI   80 (240)
T ss_pred             CCcccccchHhhhHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHhhhhcccCCccce
Confidence            775 6666689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCHHHHHHhhhhcHHHHHHHHHHHHhhHHHHHhhhhhccc
Q 032940           80 ESEANKYTQEELILMKTQDIGYILQKLQSERNGRDKRNKIYIWTKS  125 (130)
Q Consensus        80 ~~~~~~~t~e~~kl~kTQDl~Yv~~~~~~e~kKiekL~~~~~~~~~  125 (130)
                      .++.+.+++|++++++|||.+|+++.++.|..+++.+...+.|-.|
T Consensus        81 ~ReDe~~~md~~KmlktqD~~~~R~~r~lEr~k~~~~~~qi~f~es  126 (240)
T COG5223          81 YREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCGTQIKFEES  126 (240)
T ss_pred             eccccchHHHHHHHHHhhhhHHHHHHHHHHHhCCcchhceeeeecc
Confidence            9888899999999999999999999999999999999888777654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00