Citrus Sinensis ID: 032980

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEccccccccccccEEccccccccccccccccccccEEEEEcccccccHHHHHHcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEEEcccccccEEccccccccHHHHHHHHHcccccccEEEEEEcccccccHHHHHHcccccEEEEEEc
Coil and Loop (DISEMBL)
MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRgyvkdfqvydphrvgKIKVELLGRvndcraltyrqdikaseiegytvralptrqwgyvvittpdgvldhEEALRRNvggqvlgyfh
Flexible Loop (DISEMBL)
MGRRILNNALRAIVnaerrgkatvelqpistvMSSFLNIMKYRGYVKDFQVYDPHRVGKIkvellgrvndcRALTyrqdikaseiegytvralptrqwgyVVITTPDGVLDHEEAlrrnvggqvlgyfh
Low Complexity Region (SEG)
MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH
Disordered region (IsUnstruct)
******NNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGY**
Disordered Region (DISOPRED)
*GRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH
Disordered Region (DISEMBL)
MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH
Disordered Region (DISPRO)
**RRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q9M0E0	129	40S ribosomal protein S15	yes	no	1.0	1.0	0.806	2e-59
O82205	129	40S ribosomal protein S15	no	no	1.0	1.0	0.782	8e-59
Q00332	130	40S ribosomal protein S15	N/A	no	0.968	0.961	0.52	2e-34
P42798	130	40S ribosomal protein S15	no	no	0.968	0.961	0.52	2e-34
Q9AT34	130	40S ribosomal protein S15	N/A	no	0.968	0.961	0.512	1e-33
O80646	130	40S ribosomal protein S15	no	no	0.968	0.961	0.488	1e-33
Q9LX88	130	40S ribosomal protein S15	no	no	0.968	0.961	0.504	2e-33
Q6XIM8	130	40S ribosomal protein S15	N/A	no	0.961	0.953	0.483	7e-31
P48149	130	40S ribosomal protein S15	yes	no	0.961	0.953	0.483	7e-31
P33095	130	40S ribosomal protein S15	yes	no	0.961	0.953	0.483	3e-30

>sp|Q9M0E0|R15A5_ARATH 40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1

 Score =  227 bits (578), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/129 (80%), Positives = 120/129 (93%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR IVNAERRGKA+VEL+PISTVMSSFL IMK +GY+K+FQVYDPHRVG+I
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            V+L GRVNDC+ALTYRQD++A EIE YT R LPTRQWGYVVITTPDG+LDHEEA++RNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLG+F+
Sbjct: 121 GGQVLGFFY 129

Arabidopsis thaliana (taxid: 3702)

>sp|O82205|R15A2_ARATH 40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1

 Score =  224 bits (572), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 120/129 (93%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR IVNAE+RGKA+VEL+P+STVMSSFL IMK +GY+K+FQV+DPHRVG+I
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            V+L GRVNDC+ALTYRQD+KA+EI  YT R LPTRQWGY+VITTPDG+LDHEEA++RNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q00332|RS15A_BRANA 40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 94/125 (75%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +LN+AL+++ NAE+RGK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI VEL
Sbjct: 6   VLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D+   EIEG+T R LP+RQ+GY+V+TT  G++DHEEA R+NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130

Brassica napus (taxid: 3708)

>sp|P42798|R15A1_ARATH 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 94/125 (75%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +LN+AL+++ NAE+RGK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D+   EIEG+T R LP+RQ+GY+V+TT  G++DHEEA R+NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT34|RS15A_DAUCA 40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 93/125 (74%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +LN+AL+++ NAE+RGK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI VEL
Sbjct: 6   VLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D+   EIE +T R LP+RQ+GY+V+TT  G++DHEEA R+NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130

Daucus carota (taxid: 4039)

>sp|O80646|R15A3_ARATH 40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 94/125 (75%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +LN+ L+++ NAE++GK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI VEL
Sbjct: 6   VLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVEL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N+C  ++ R D+   EIEG+T + LP+RQ+GY+V+TT  G++DHEEA ++NVGG+V
Sbjct: 66  NGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX88|R15A4_ARATH 40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 93/125 (74%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +LN+ L+++ NAE+RGK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI VEL
Sbjct: 6   VLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D+   EIEG+T R LP+RQ+G++V+TT  G++DHEEA R+NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q6XIM8|RS15A_DROYA 40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3

 Score =  132 bits (332), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 89/124 (71%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +L +AL+ I NAE+RGK  V L+P S V+  FL +M   GY+ +F++ D HR GKI V L
Sbjct: 6   VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D+  ++IE +T   LP+RQ+GYVV+TT  G++DHEEA R+++GG++
Sbjct: 66  TGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKI 125

Query: 125 LGYF 128
           LG+F
Sbjct: 126 LGFF 129

Drosophila yakuba (taxid: 7245)

>sp|P48149|RS15A_DROME 40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2

 Score =  132 bits (332), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 89/124 (71%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +L +AL+ I NAE+RGK  V L+P S V+  FL +M   GY+ +F++ D HR GKI V L
Sbjct: 6   VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D+  ++IE +T   LP+RQ+GYVV+TT  G++DHEEA R+++GG++
Sbjct: 66  TGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKI 125

Query: 125 LGYF 128
           LG+F
Sbjct: 126 LGFF 129

Drosophila melanogaster (taxid: 7227)

>sp|P33095|RS15A_STRPU 40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 88/124 (70%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +L +ALR+I NAE+R K  V ++P S V   FL +M   GY+ +F++ D HR GKI V L
Sbjct: 6   VLADALRSICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYIGEFEIVDDHRGGKIIVNL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D+  +E+E +T   LP+RQ+GYVV+TT  G++DHEEA R++VGG++
Sbjct: 66  NGRLNKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKI 125

Query: 125 LGYF 128
           LG+F
Sbjct: 126 LGFF 129

Strongylocentrotus purpuratus (taxid: 7668)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
15233571	129	40S ribosomal protein S15a-5 [Arabidopsi	1.0	1.0	0.806	1e-57
297832184	129	RPS15AB [Arabidopsis lyrata subsp. lyrat	1.0	1.0	0.798	2e-57
224105963	129	predicted protein [Populus trichocarpa]	1.0	1.0	0.821	2e-57
15224834	129	40S ribosomal protein S15a-2 [Arabidopsi	1.0	1.0	0.782	6e-57
357520733	129	40S ribosomal protein S15a-5 [Medicago t	1.0	1.0	0.790	7e-57
356513207	129	PREDICTED: 40S ribosomal protein S15a-5-	1.0	1.0	0.775	9e-57
388522701	129	unknown [Lotus japonicus]	1.0	1.0	0.790	1e-56
351725661	129	uncharacterized protein LOC100306361 [Gl	1.0	1.0	0.767	4e-56
255546217	129	30S ribosomal protein S8, putative [Rici	1.0	1.0	0.790	2e-55
115445365	129	Os02g0255200 [Oryza sativa Japonica Grou	1.0	1.0	0.798	3e-55

>gi|15233571|ref|NP_194672.1| 40S ribosomal protein S15a-5 [Arabidopsis thaliana] gi|297803094|ref|XP_002869431.1| RPS15AE [Arabidopsis lyrata subsp. lyrata] gi|75311751|sp|Q9M0E0.1|R15A5_ARATH RecName: Full=40S ribosomal protein S15a-5 gi|7269842|emb|CAB79701.1| ribosomal protein S15a homolog [Arabidopsis thaliana] gi|21553914|gb|AAM62997.1| ribosomal protein S15a homolog [Arabidopsis thaliana] gi|110737866|dbj|BAF00871.1| ribosomal protein S15a homolog [Arabidopsis thaliana] gi|111074474|gb|ABH04610.1| At4g29430 [Arabidopsis thaliana] gi|297315267|gb|EFH45690.1| RPS15AE [Arabidopsis lyrata subsp. lyrata] gi|332660230|gb|AEE85630.1| 40S ribosomal protein S15a-5 [Arabidopsis thaliana]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/129 (80%), Positives = 120/129 (93%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR IVNAERRGKA+VEL+PISTVMSSFL IMK +GY+K+FQVYDPHRVG+I
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            V+L GRVNDC+ALTYRQD++A EIE YT R LPTRQWGYVVITTPDG+LDHEEA++RNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLG+F+
Sbjct: 121 GGQVLGFFY 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832184|ref|XP_002883974.1| RPS15AB [Arabidopsis lyrata subsp. lyrata] gi|297329814|gb|EFH60233.1| RPS15AB [Arabidopsis lyrata subsp. lyrata]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/129 (79%), Positives = 120/129 (93%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR IVNAE+RGKA+VEL+P+STVMSSFL IMK +GY+K+FQVYDPHRVG+I
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            V+L GRVNDC+ALTYRQD+KA+EI  YT R LPTRQWGYVVITTPDG+LDHEEA++RNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDLKANEIGQYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105963|ref|XP_002313996.1| predicted protein [Populus trichocarpa] gi|224105965|ref|XP_002313997.1| predicted protein [Populus trichocarpa] gi|224150061|ref|XP_002336903.1| predicted protein [Populus trichocarpa] gi|224150848|ref|XP_002337022.1| predicted protein [Populus trichocarpa] gi|118484699|gb|ABK94220.1| unknown [Populus trichocarpa] gi|222837094|gb|EEE75473.1| predicted protein [Populus trichocarpa] gi|222837844|gb|EEE76209.1| predicted protein [Populus trichocarpa] gi|222850404|gb|EEE87951.1| predicted protein [Populus trichocarpa] gi|222850405|gb|EEE87952.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/129 (82%), Positives = 116/129 (89%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALRAIVNAERR K+TVELQPISTV SSFL IMK RGY+K+F VYDPHRVG+I
Sbjct: 1   MGRRILNDALRAIVNAERRSKSTVELQPISTVTSSFLKIMKDRGYIKNFHVYDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            VEL GRV DCRALTYRQDIKA +IE Y +R LPTRQWGYVV+TTPDG+LDHEEA+ RNV
Sbjct: 61  TVELQGRVTDCRALTYRQDIKAKDIEAYRLRNLPTRQWGYVVVTTPDGILDHEEAISRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224834|ref|NP_179562.1| 40S ribosomal protein S15a-2 [Arabidopsis thaliana] gi|75279062|sp|O82205.1|R15A2_ARATH RecName: Full=40S ribosomal protein S15a-2 gi|3687245|gb|AAC62143.1| 40S ribosomal protein S15A [Arabidopsis thaliana] gi|48310079|gb|AAT41749.1| At2g19720 [Arabidopsis thaliana] gi|50198839|gb|AAT70450.1| At2g19720 [Arabidopsis thaliana] gi|330251823|gb|AEC06917.1| 40S ribosomal protein S15a-2 [Arabidopsis thaliana]

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 120/129 (93%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR IVNAE+RGKA+VEL+P+STVMSSFL IMK +GY+K+FQV+DPHRVG+I
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            V+L GRVNDC+ALTYRQD+KA+EI  YT R LPTRQWGY+VITTPDG+LDHEEA++RNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520733|ref|XP_003630655.1| 40S ribosomal protein S15a-5 [Medicago truncatula] gi|217071420|gb|ACJ84070.1| unknown [Medicago truncatula] gi|355524677|gb|AET05131.1| 40S ribosomal protein S15a-5 [Medicago truncatula] gi|388507250|gb|AFK41691.1| unknown [Medicago truncatula]

 Score =  224 bits (572), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 102/129 (79%), Positives = 118/129 (91%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR++VNAE+RGKA VEL+PIS V+SSFL+IMK+RGY+KDFQVYDPHRVG+I
Sbjct: 1   MGRRILNDALRSMVNAEKRGKAMVELKPISNVISSFLHIMKHRGYIKDFQVYDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            VEL GR+NDC+ALTYRQD+KA +IE Y +  LPT QWGYVVITTPDGVLDHEEA +RNV
Sbjct: 61  TVELQGRINDCKALTYRQDLKAKDIEAYRLNTLPTHQWGYVVITTPDGVLDHEEAAKRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513207|ref|XP_003525305.1| PREDICTED: 40S ribosomal protein S15a-5-like [Glycine max]

 Score =  224 bits (571), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 100/129 (77%), Positives = 120/129 (93%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR++VNAERRGKA VEL+PISTVMSSFL IMK+ GY+KDFQVYDPHRVG+I
Sbjct: 1   MGRRILNDALRSMVNAERRGKALVELKPISTVMSSFLQIMKHHGYIKDFQVYDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
           +VEL GR+NDC+AL++R+D+KA +IE Y ++ LPT QWGYVVITTPDG+LDHEEA+R+NV
Sbjct: 61  RVELQGRINDCKALSHRKDLKARDIEAYRLQTLPTHQWGYVVITTPDGILDHEEAIRKNV 120

Query: 121 GGQVLGYFH 129
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522701|gb|AFK49412.1| unknown [Lotus japonicus]

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/129 (79%), Positives = 119/129 (92%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR++VNAERRGKA VEL+PISTV+SSFL IMK RGYVK+F+VYDPHRVG+I
Sbjct: 1   MGRRILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            VEL GR+NDC+ALTYRQD+KA +IE Y ++ LPT QWGYVVI+TPDGVLDHEEA+R+NV
Sbjct: 61  TVELQGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNV 120

Query: 121 GGQVLGYFH 129
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725661|ref|NP_001237612.1| uncharacterized protein LOC100306361 [Glycine max] gi|255628301|gb|ACU14495.1| unknown [Glycine max]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 99/129 (76%), Positives = 118/129 (91%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR++VNAERRGK+ VEL+PISTVMSSFL IMK+ GY+KDFQVYDPHRVG+I
Sbjct: 1   MGRRILNDALRSMVNAERRGKSMVELKPISTVMSSFLQIMKHHGYIKDFQVYDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            VEL GR+NDC+AL +R+D+KA +IE Y ++ LPT QWGYVVITTPDG+LDHEEA+R+NV
Sbjct: 61  SVELQGRINDCKALMHRKDLKARDIEAYRLQTLPTHQWGYVVITTPDGILDHEEAIRKNV 120

Query: 121 GGQVLGYFH 129
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546217|ref|XP_002514168.1| 30S ribosomal protein S8, putative [Ricinus communis] gi|223546624|gb|EEF48122.1| 30S ribosomal protein S8, putative [Ricinus communis]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/129 (79%), Positives = 117/129 (90%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALRA+VNAERRGK  V+LQPISTVMSSFL IMK RGY+K+FQVYDPHRVG+I
Sbjct: 1   MGRRILNDALRAMVNAERRGKDRVQLQPISTVMSSFLKIMKDRGYIKNFQVYDPHRVGRI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            VEL GR+ DC+ALT+RQD+KA +IE Y +RALPT Q+GYVVITTPDGVLDHE+A+ RNV
Sbjct: 61  TVELQGRIKDCKALTHRQDLKAKDIEAYRLRALPTHQYGYVVITTPDGVLDHEQAIERNV 120

Query: 121 GGQVLGYFH 129
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115445365|ref|NP_001046462.1| Os02g0255200 [Oryza sativa Japonica Group] gi|50251667|dbj|BAD29691.1| putative 40S ribosomal protein S15A [Oryza sativa Japonica Group] gi|113535993|dbj|BAF08376.1| Os02g0255200 [Oryza sativa Japonica Group] gi|125538846|gb|EAY85241.1| hypothetical protein OsI_06614 [Oryza sativa Indica Group] gi|125581523|gb|EAZ22454.1| hypothetical protein OsJ_06122 [Oryza sativa Japonica Group] gi|215768335|dbj|BAH00564.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/129 (79%), Positives = 115/129 (89%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           MGRRILN+ALR +VNAERRGKAT  LQPIS VM SFLNIMK+RGY+K F+V DPHRVGKI
Sbjct: 1   MGRRILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKI 60

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            VEL GR+ DC+ALTYRQDI+A EIE Y VR LPTRQWGYVVITTP+GVLDHEEA+++NV
Sbjct: 61  NVELHGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNV 120

Query: 121 GGQVLGYFH 129
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2118319	129	rps15ae "ribosomal protein S15	1.0	1.0	0.806	1.6e-54
TAIR|locus:2052025	129	rps15ab "ribosomal protein S15	1.0	1.0	0.782	8.9e-54
TAIR|locus:2026525	130	RPS15A "ribosomal protein S15A	0.968	0.961	0.52	1.8e-32
TAIR|locus:2168118	130	AT5G59850 [Arabidopsis thalian	0.968	0.961	0.52	1.8e-32
TAIR|locus:2075231	130	RPS15AD "ribosomal protein S15	0.968	0.961	0.504	1.3e-31
FB|FBgn0010198	130	RpS15Aa "Ribosomal protein S15	0.961	0.953	0.483	3.4e-29
FB|FBgn0033555	130	RpS15Ab "Ribosomal protein S15	0.961	0.953	0.475	1.5e-28
UNIPROTKB|F1NXW3	136	RPS15A "Uncharacterized protei	0.961	0.911	0.451	3.9e-28
WB|WBGene00004491	130	rps-22 [Caenorhabditis elegans	0.961	0.953	0.459	3.9e-28
GENEDB_PFALCIPARUM|PFC0735w	130	PFC0735w "40S ribosomal protei	0.961	0.953	0.459	5e-28

TAIR|locus:2118319 rps15ae "ribosomal protein S15A E" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 104/129 (80%), Positives = 120/129 (93%)

Query:     1 MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
             MGRRILN+ALR IVNAERRGKA+VEL+PISTVMSSFL IMK +GY+K+FQVYDPHRVG+I
Sbjct:     1 MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query:    61 KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
              V+L GRVNDC+ALTYRQD++A EIE YT R LPTRQWGYVVITTPDG+LDHEEA++RNV
Sbjct:    61 TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query:   121 GGQVLGYFH 129
             GGQVLG+F+
Sbjct:   121 GGQVLGFFY 129

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

TAIR|locus:2052025 rps15ab "ribosomal protein S15A B" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 101/129 (78%), Positives = 120/129 (93%)

Query:     1 MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
             MGRRILN+ALR IVNAE+RGKA+VEL+P+STVMSSFL IMK +GY+K+FQV+DPHRVG+I
Sbjct:     1 MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query:    61 KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
              V+L GRVNDC+ALTYRQD+KA+EI  YT R LPTRQWGY+VITTPDG+LDHEEA++RNV
Sbjct:    61 TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query:   121 GGQVLGYFH 129
             GGQVLG+FH
Sbjct:   121 GGQVLGFFH 129

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

TAIR|locus:2026525 RPS15A "ribosomal protein S15A" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 65/125 (52%), Positives = 94/125 (75%)

Query:     5 ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
             +LN+AL+++ NAE+RGK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI VEL
Sbjct:     6 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query:    65 LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
              GR+N C  ++ R D+   EIEG+T R LP+RQ+GY+V+TT  G++DHEEA R+NVGG+V
Sbjct:    66 NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query:   125 LGYFH 129
             LG+F+
Sbjct:   126 LGFFY 130

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=ISS;IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2168118 AT5G59850 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 65/125 (52%), Positives = 94/125 (75%)

Query:     5 ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
             +LN+AL+++ NAE+RGK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI VEL
Sbjct:     6 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query:    65 LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
              GR+N C  ++ R D+   EIEG+T R LP+RQ+GY+V+TT  G++DHEEA R+NVGG+V
Sbjct:    66 NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query:   125 LGYFH 129
             LG+F+
Sbjct:   126 LGFFY 130

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2075231 RPS15AD "ribosomal protein S15A D" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/125 (50%), Positives = 93/125 (74%)

Query:     5 ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
             +LN+ L+++ NAE+RGK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI VEL
Sbjct:     6 VLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query:    65 LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
              GR+N C  ++ R D+   EIEG+T R LP+RQ+G++V+TT  G++DHEEA R+NVGG+V
Sbjct:    66 NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKV 125

Query:   125 LGYFH 129
             LG+F+
Sbjct:   126 LGFFY 130

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

FB|FBgn0010198 RpS15Aa "Ribosomal protein S15Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 60/124 (48%), Positives = 89/124 (71%)

Query:     5 ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
             +L +AL+ I NAE+RGK  V L+P S V+  FL +M   GY+ +F++ D HR GKI V L
Sbjct:     6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNL 65

Query:    65 LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
              GR+N C  ++ R D+  ++IE +T   LP+RQ+GYVV+TT  G++DHEEA R+++GG++
Sbjct:    66 TGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKI 125

Query:   125 LGYF 128
             LG+F
Sbjct:   126 LGFF 129

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0005811 "lipid particle" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

FB|FBgn0033555 RpS15Ab "Ribosomal protein S15Ab" [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 59/124 (47%), Positives = 88/124 (70%)

Query:     5 ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
             +L +AL+ I NAE+RGK  V L+P S V+  FL +M   GY+ +F++ + HR GKI V L
Sbjct:     6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVEDHRAGKIVVNL 65

Query:    65 LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
              GR+N C  ++ R D   ++IE +T   LP+RQ+GYVV+TT  G++DHEEA R+++GG++
Sbjct:    66 TGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKI 125

Query:   125 LGYF 128
             LG+F
Sbjct:   126 LGFF 129

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

UNIPROTKB|F1NXW3 RPS15A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 56/124 (45%), Positives = 88/124 (70%)

Query:     5 ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
             +L +AL++I NAE+RGK  V ++P S V+  FL +M   GY+ +F++ D HR GKI V L
Sbjct:    12 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNL 71

Query:    65 LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
              GR+N C  ++ R D++  ++E +    LP+RQ+GY+V+TT  G++DHEEA R++ GG++
Sbjct:    72 TGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKI 131

Query:   125 LGYF 128
             LG+F
Sbjct:   132 LGFF 135

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

WB|WBGene00004491 rps-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 57/124 (45%), Positives = 89/124 (71%)

Query:     5 ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
             +L +AL AI NAE+RGK  V ++P S V+  FL +M   GY+ +F++ D HR GKI V L
Sbjct:     6 VLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 65

Query:    65 LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
              GR+N    ++ R +I+ +++E YT   LP+RQ+GY+++TT  G++DHEEA R+++GG++
Sbjct:    66 TGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKI 125

Query:   125 LGYF 128
             LG+F
Sbjct:   126 LGFF 129

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IGI;IMP

GO:0009408 "response to heat" evidence=IMP

GENEDB_PFALCIPARUM|PFC0735w PFC0735w "40S ribosomal protein S15A, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 57/124 (45%), Positives = 86/124 (69%)

Query:     5 ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
             +L + L+ I NAE+RG+  V ++P S V+  FL  M+ +GY+  F++ D HR GKI V L
Sbjct:     6 VLADCLKTINNAEKRGRRQVLIRPSSKVVIKFLQYMQKKGYIGSFEIVDDHRSGKIVVNL 65

Query:    65 LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
             LGR+N C  ++ R D+K  EIE      LP+R +G++++TTP G++DHEEA R++ GG+V
Sbjct:    66 LGRINKCAVISPRYDVKLDEIEKIITSILPSRLFGHLILTTPYGIMDHEEARRKHTGGKV 125

Query:   125 LGYF 128
             LG+F
Sbjct:   126 LGFF 129

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B6YSM9	RS8_THEON	No assigned EC number	0.3548	0.9612	0.9538	yes	no
B9LSR2	RS8_HALLT	No assigned EC number	0.375	0.9922	0.9846	yes	no
Q00332	RS15A_BRANA	No assigned EC number	0.52	0.9689	0.9615	N/A	no
Q8TW15	RS8_METKA	No assigned EC number	0.3709	0.9612	0.9538	yes	no
A1RWS0	RS8_THEPD	No assigned EC number	0.3870	0.9612	0.9612	yes	no
Q9AT34	RS15A_DAUCA	No assigned EC number	0.512	0.9689	0.9615	N/A	no
A4YCY1	RS8_METS5	No assigned EC number	0.3858	0.9612	0.9323	yes	no
Q76I82	RS15A_BOVIN	No assigned EC number	0.4435	0.9612	0.9538	yes	no
O26126	RS8_METTH	No assigned EC number	0.3629	0.9612	0.9538	yes	no
O28369	RS8_ARCFU	No assigned EC number	0.3870	0.9612	0.9612	yes	no
Q3IMX3	RS8_NATPD	No assigned EC number	0.3870	0.9612	0.9538	yes	no
Q7KR04	RS15B_DROME	No assigned EC number	0.4758	0.9612	0.9538	yes	no
O82205	R15A2_ARATH	No assigned EC number	0.7829	1.0	1.0	no	no
O14469	RS22_SCHPO	No assigned EC number	0.416	0.9689	0.9615	yes	no
Q12ZT6	RS8_METBU	No assigned EC number	0.3709	0.9612	0.9538	yes	no
Q3E7Y3	RS22B_YEAST	No assigned EC number	0.464	0.9689	0.9615	yes	no
P62244	RS15A_HUMAN	No assigned EC number	0.4435	0.9612	0.9538	yes	no
P62245	RS15A_MOUSE	No assigned EC number	0.4435	0.9612	0.9538	yes	no
P62246	RS15A_RAT	No assigned EC number	0.4435	0.9612	0.9538	yes	no
Q6FMW9	RS22_CANGA	No assigned EC number	0.456	0.9689	0.9615	yes	no
P0C0W1	RS22A_YEAST	No assigned EC number	0.456	0.9689	0.9615	yes	no
Q6CW21	RS22_KLULA	No assigned EC number	0.448	0.9689	0.9615	yes	no
A2BMD4	RS8_HYPBU	No assigned EC number	0.3779	0.9612	0.9323	yes	no
Q6L1B2	RS8_PICTO	No assigned EC number	0.3565	1.0	1.0	yes	no
Q18GG4	RS8_HALWD	No assigned EC number	0.3906	0.9922	0.9846	yes	no
P54041	RS8_METJA	No assigned EC number	0.3870	0.9612	0.9538	yes	no
Q5JJG3	RS8_PYRKO	No assigned EC number	0.3548	0.9612	0.9538	yes	no
P33095	RS15A_STRPU	No assigned EC number	0.4838	0.9612	0.9538	yes	no
C6A175	RS8_THESM	No assigned EC number	0.3790	0.9612	0.9538	yes	no
Q977V0	RS8_METIG	No assigned EC number	0.3524	0.9457	0.9384	yes	no
P46793	RS15A_DICDI	No assigned EC number	0.44	0.9689	0.9615	yes	no
O59432	RS8_PYRHO	No assigned EC number	0.3709	0.9612	0.9538	yes	no
P48149	RS15A_DROME	No assigned EC number	0.4838	0.9612	0.9538	yes	no
Q9M0E0	R15A5_ARATH	No assigned EC number	0.8062	1.0	1.0	yes	no
Q8U014	RS8_PYRFU	No assigned EC number	0.3709	0.9612	0.9538	yes	no
Q752J5	RS22_ASHGO	No assigned EC number	0.448	0.9689	0.9615	yes	no
Q5R938	RS15A_PONAB	No assigned EC number	0.4354	0.9612	0.9538	yes	no
A2SPL7	RS8_METLZ	No assigned EC number	0.3524	0.9457	0.9384	yes	no
Q0W1X3	RS8_UNCMA	No assigned EC number	0.3548	0.9612	0.9538	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
PLN00146	130	PLN00146, PLN00146, 40S ribosomal protein S15a; Pr	6e-79
PTZ00158	130	PTZ00158, PTZ00158, 40S ribosomal protein S15A; Pr	4e-49
PRK04034	130	PRK04034, rps8p, 30S ribosomal protein S8P; Review	1e-40
COG0096	132	COG0096, RpsH, Ribosomal protein S8 [Translation,	4e-33
pfam00410	129	pfam00410, Ribosomal_S8, Ribosomal protein S8	8e-21
PRK00136	130	PRK00136, rpsH, 30S ribosomal protein S8; Validate	2e-10

>gnl|CDD|215075 PLN00146, PLN00146, 40S ribosomal protein S15a; Provisional

 Score =  228 bits (583), Expect = 6e-79
 Identities = 67/129 (51%), Positives = 96/129 (74%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           + R +LN+AL+ + NAE+RGK  V ++P S V+  FL +M+  GY+ +F+V D HR GKI
Sbjct: 2   VRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKI 61

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
            VEL GR+N C  ++ R D+K  EIE +T R LP+RQ+GY+V+TT  G++DHEEA R+NV
Sbjct: 62  VVELNGRLNKCGVISPRFDVKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121

Query: 121 GGQVLGYFH 129
           GG+VLG+F+
Sbjct: 122 GGKVLGFFY 130

Length = 130

>gnl|CDD|185487 PTZ00158, PTZ00158, 40S ribosomal protein S15A; Provisional

 Score =  152 bits (387), Expect = 4e-49
 Identities = 58/125 (46%), Positives = 88/125 (70%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +L + LR+IVNAE++GK  V ++P S V+  FL +M+  GY+ +F++ D HR GKI V L
Sbjct: 6   VLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D+   E E +    LP+RQ+G+VV+TT  G++DHEEA RR+ GG++
Sbjct: 66  NGRLNKCGVISPRFDVTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKI 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130

Length = 130

>gnl|CDD|179721 PRK04034, rps8p, 30S ribosomal protein S8P; Reviewed

 Score =  131 bits (332), Expect = 1e-40
 Identities = 51/127 (40%), Positives = 76/127 (59%)

Query: 1   MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKI 60
           +    L NAL  I NAE  GK  V ++P S ++ + L +M+  GY+ +F+  D  R GK 
Sbjct: 2   VLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKF 61

Query: 61  KVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNV 120
           KVELLGR+N C A+  R  +K  E E +  R LP R +G ++++T  GV+ H+EA  + +
Sbjct: 62  KVELLGRINKCGAIKPRYPVKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGI 121

Query: 121 GGQVLGY 127
           GG +L Y
Sbjct: 122 GGVLLAY 128

Length = 130

>gnl|CDD|223174 COG0096, RpsH, Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

 Score =  112 bits (282), Expect = 4e-33
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
            L + L  I NAER  K  V + P S +  + L ++K  GY+KDF+V D  R GK++V+L
Sbjct: 6   PLADMLTRIRNAERAKKEVVSM-PASKLKGAILKVLKKEGYIKDFEVIDDGRKGKLRVQL 64

Query: 65  LGRVNDCRALTYRQDIKASEIEGY-TVRALPTRQWGY--VVITTPDGVLDHEEALRRNVG 121
             R+N C  ++  + +    +  Y   R LP    G    +++T  GV+  +EA ++ VG
Sbjct: 65  KYRINGCGVISPIKRVSKPGLRVYEKKRELPAVLNGLGIAIVSTSKGVMTDKEARKKGVG 124

Query: 122 GQVLGYF 128
           G+VL Y 
Sbjct: 125 GEVLCYV 131

Length = 132

>gnl|CDD|215906 pfam00410, Ribosomal_S8, Ribosomal protein S8

 Score = 81.0 bits (201), Expect = 8e-21
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 17/133 (12%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGK-IKVEL 64
           + + L  I NA+   K TV + P S +  S L I+K  GY+K F+V +  R GK IKV L
Sbjct: 3   IADMLTRIRNAQMAKKETVLI-PASKLKISILKILKEEGYIKGFEVIEDERNGKFIKVTL 61

Query: 65  ---------LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEA 115
                    +  +        R  +   E+    V        G  +++T  GV+   EA
Sbjct: 62  KYDKNGKPVITGIKRISKPGLRVYVSYKELP--KVL----GGLGIAILSTSKGVMTDREA 115

Query: 116 LRRNVGGQVLGYF 128
            ++ VGG+VL Y 
Sbjct: 116 RKKGVGGEVLCYV 128

Length = 129

>gnl|CDD|234658 PRK00136, rpsH, 30S ribosomal protein S8; Validated

 Score = 54.3 bits (132), Expect = 2e-10
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 27/129 (20%)

Query: 13  IVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCR 72
           I NA+     TV + P S +  +   I+K  GY+KD++V +  + G +++          
Sbjct: 13  IRNAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRIT--------- 62

Query: 73  ALTYRQDIKASEIEG-----------YT-VRALPTRQWGY--VVITTPDGVLDHEEALRR 118
            L Y +      IEG           Y     LP    G    +++T  GV+   EA + 
Sbjct: 63  -LKYGEGEPV--IEGIKRVSKPGLRVYKKKDELPKVLNGLGIAIVSTSKGVMTDREARKA 119

Query: 119 NVGGQVLGY 127
            VGG+VL Y
Sbjct: 120 GVGGEVLCY 128

Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
PLN00146	130	40S ribosomal protein S15a; Provisional	100.0
PTZ00158	130	40S ribosomal protein S15A; Provisional	100.0
COG0096	132	RpsH Ribosomal protein S8 [Translation, ribosomal	100.0
PRK04034	130	rps8p 30S ribosomal protein S8P; Reviewed	100.0
CHL00042	132	rps8 ribosomal protein S8	100.0
PRK00136	130	rpsH 30S ribosomal protein S8; Validated	100.0
PF00410	129	Ribosomal_S8: Ribosomal protein S8; InterPro: IPR0	100.0
KOG1754	130	consensus 40S ribosomal protein S15/S22 [Translati	100.0

>PLN00146 40S ribosomal protein S15a; Provisional

Probab=100.00  E-value=2.3e-50  Score=289.90  Aligned_cols=128  Identities=53%  Similarity=0.911  Sum_probs=122.8

Q ss_pred             CCC-chHHHHHHHhhhhhhcCCceEE-eecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccccce
Q 032980            1 MGR-RILNNALRAIVNAERRGKATVE-LQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQ   78 (129)
Q Consensus         1 M~~-d~lad~lt~IrNa~~a~~~~v~-i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRv   78 (129)
                      |++ ||+||||||||||++++|+.|. + |+||++.+||++|++||||++|++.+++..+.++++|||..+++++||||+
T Consensus         1 m~~~~~iad~lt~IrNa~~a~~~~v~~~-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~~i~~~~~IS~Rv   79 (130)
T PLN00146          1 MVRRSVLNDALKTMYNAEKRGKRQVLIR-PSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRF   79 (130)
T ss_pred             CCCcChHHHHHHHhHhHHHcCCCeEEEE-cChHHHHHHHHHHHHCCCCcceEEEecCCcceEEEEEcccccCCcEEEcCE
Confidence            776 9999999999999999999997 6 999999999999999999999998776667789999999989999999999


Q ss_pred             eecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           79 DIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        79 y~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      |++.+|||+|..|++|+.|+|++|+|||+|||||+||+++++|||+||+||
T Consensus        80 y~~~~~l~~v~~~~~~~~g~Gi~IlSTskGimt~~eAr~~~vGGEvL~~vy  130 (130)
T PLN00146         80 DVKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
T ss_pred             ecCcchhhHHHhccCCCCCCEEEEEECCCccccHHHHHHcCCCCEEEEEEC
Confidence            999999999999999999999999999999999999999999999999998

>PTZ00158 40S ribosomal protein S15A; Provisional

Probab=100.00  E-value=5.6e-50  Score=287.48  Aligned_cols=129  Identities=47%  Similarity=0.827  Sum_probs=123.7

Q ss_pred             CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCcccccccee
Q 032980            1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQD   79 (129)
Q Consensus         1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy   79 (129)
                      |+. ||+|||||+||||++++|++|.+.|+||++.+||++|++||||.+|++.+++....+.+.|+-+.++|+.||||+|
T Consensus         1 m~~~~~iadmlt~IrNa~~~~~~~V~v~p~Skl~~~il~IL~~eGyI~~~~~~~~~~~~~i~v~l~~rIsk~g~IS~RvY   80 (130)
T PTZ00158          1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD   80 (130)
T ss_pred             CCcccHHHHHHHhhhhHHhCCCCeEEEeCCcHHHHHHHHHHHHCCcccceEEEecCCEEEEEEEEcCccccCCCCccceE
Confidence            774 9999999999999999999999559999999999999999999999988776677889999999999999999999


Q ss_pred             ecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           80 IKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      ++++|||+|.+||+|.+|+|++|||||+|||||+||+++++|||+||+||
T Consensus        81 ~~~~~ip~v~~~~lp~~glGi~IlSTSkGImt~~eAr~~~vGGEvLc~v~  130 (130)
T PTZ00158         81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY  130 (130)
T ss_pred             CCcchhhHHhcCCCccccceEEEEECCCCccChHHHHHcCCCceEEEEEC
Confidence            99999999999999999999999999999999999999999999999998

>COG0096 RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.2e-50  Score=287.63  Aligned_cols=122  Identities=36%  Similarity=0.574  Sum_probs=117.8

Q ss_pred             CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccc----
Q 032980            1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALT----   75 (129)
Q Consensus         1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~Is----   75 (129)
                      |++ |||||||||||||.+++|..|.+ |+||+..+||++|++||||++|++.++++++.++|+|||+.+++|+|+    
T Consensus         1 m~~~DpiAdmltrIrNa~~~~~~~v~~-P~SKl~~~il~vLk~eGYI~~f~~~~~~~~~~~~v~Lky~~n~~~vI~~~~r   79 (132)
T COG0096           1 MMMTDPLADMLTRIRNAERAKKEVVSM-PASKLKGAILKVLKKEGYIKDFEVIDDGRKGKLRVQLKYRINGCGVISPIKR   79 (132)
T ss_pred             CccccHHHHHHHHhHhHHHhccceeec-chHHHHHHHHHHHHHcCCcceEEEEeCCcceEEEEEEEeccCCCccccccee
Confidence            565 99999999999999999999998 999999999999999999999999999889999999999999999998    


Q ss_pred             ---c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           76 ---Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        76 ---p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                         |  |+|.+.++||++.+      |+|++|||||+|||||+|||++|+|||+|||||
T Consensus        80 VSkpg~rvy~~~~~LP~v~~------g~Gi~IvSTs~GVMtd~eAr~~~vGGevLcyV~  132 (132)
T COG0096          80 VSKPGLRVYEKKRELPAVLN------GLGIAIVSTSKGVMTDKEARKKGVGGEVLCYVW  132 (132)
T ss_pred             cCCCCceeecChhhhhhhhc------CceEEEEEcCCCccChHHHHHcCCCcEEEEEEC
Confidence               5  99999999999999      799999999999999999999999999999999

>PRK04034 rps8p 30S ribosomal protein S8P; Reviewed

Probab=100.00  E-value=1.2e-48  Score=280.91  Aligned_cols=128  Identities=41%  Similarity=0.676  Sum_probs=121.7

Q ss_pred             CC-CchHHHHHHHhhhhhhcCCceEE-eecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccccce
Q 032980            1 MG-RRILNNALRAIVNAERRGKATVE-LQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQ   78 (129)
Q Consensus         1 M~-~d~lad~lt~IrNa~~a~~~~v~-i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRv   78 (129)
                      |+ .|+||||||+||||++|+++.|. + |+|+++.+||++|++||||++|++.++++++.+.++|||..+++++|+||+
T Consensus         1 m~~~d~iad~lt~IrNa~~a~~~~v~~~-p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~~v~Lk~~~~~~~~IkPRv   79 (130)
T PRK04034          1 MVLLDPLANALSTIKNAEMVGKKEVIIK-PASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRY   79 (130)
T ss_pred             CCcccHHHHHHHHhHhHHHcCCceEEEE-cccHHHHHHHHHHHHCCCceEEEEEcCCCccceEEEECCccCCCCcCCCCe
Confidence            65 49999999999999999999985 7 999999999999999999999998777667788999999888899999999


Q ss_pred             eecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           79 DIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        79 y~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      |++.+|||++..+++|+.++|++|||||+|||||+||+++++|||+||+||
T Consensus        80 y~~~~~l~~~~~~~l~~~~lGi~IlSTskGImt~~eA~~~~vGGEvL~~v~  130 (130)
T PRK04034         80 PVKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGIGGVLLAYVY  130 (130)
T ss_pred             EcCHhHhHHHHhccCCCCCceEEEEECCCCceeHHHHHHcCCCCEEEEEEC
Confidence            999999999999999999999999999999999999999999999999999

>CHL00042 rps8 ribosomal protein S8

Probab=100.00  E-value=6.7e-47  Score=272.54  Aligned_cols=122  Identities=24%  Similarity=0.352  Sum_probs=113.7

Q ss_pred             CCCchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccC-Cccccc----
Q 032980            1 MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVN-DCRALT----   75 (129)
Q Consensus         1 M~~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~-k~~~Is----   75 (129)
                      |..|+||||||+||||++|++++|.+ |+|+++.+||++|++||||++|++.+++.++.++|+|||+.+ +.|+|+    
T Consensus         1 m~~d~iad~lt~IrNa~~a~~~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~~~~pvi~~i~~   79 (132)
T CHL00042          1 MGNDTIADMLTRIRNANMVKKGTVRI-PATNITENIVKILLREGFIENVREHRENNKYFLVLTLKYRGNKKKPYITTLKR   79 (132)
T ss_pred             CCcchHHHHHHHhHHHHHCCCCEEEE-eccHHHHHHHHHHHHCCcccceEEEecCCeeEEEEEEEeecCCCceeccccEE
Confidence            77799999999999999999999999 999999999999999999999999877777889999999853 246554    


Q ss_pred             ---c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           76 ---Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        76 ---p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                         |  |+|++.+|||++.+      |+|++|||||+|||||+||+++++|||+||+||
T Consensus        80 iSkPg~Rvy~~~~~L~~~~~------g~G~~IlSTskGimt~~eA~~~~iGGe~L~~v~  132 (132)
T CHL00042         80 ISKPGLRIYSNYKEIPRVLG------GMGIVILSTSKGIMTDREARLKGIGGEILCYIW  132 (132)
T ss_pred             EcCCCceeEcCHhHHHHHhC------CCcEEEEECCCCcccHHHHHHcCCCCEEEEEEC
Confidence               7  99999999999998      799999999999999999999999999999999

>PRK00136 rpsH 30S ribosomal protein S8; Validated

Probab=100.00  E-value=2.1e-45  Score=264.06  Aligned_cols=121  Identities=26%  Similarity=0.387  Sum_probs=113.3

Q ss_pred             CCCchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccc-----
Q 032980            1 MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALT-----   75 (129)
Q Consensus         1 M~~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~Is-----   75 (129)
                      |..|+||||||+||||++|++.+|.+ |+|+++.+||++|++||||++|++.++++..+++|+|||+.+ +|+|+     
T Consensus         1 m~~d~i~d~lt~IrNa~~~~~~~v~i-p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~~v~Lky~~~-~pvi~~i~~I   78 (130)
T PRK00136          1 SMTDPIADMLTRIRNAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLKYGEG-EPVIEGIKRV   78 (130)
T ss_pred             CCcChHHHHHHHHHHHHHcCCCeEEe-cccHHHHHHHHHHHHCCcccceEEEecCCcceEEEEEecCCC-CcccccceEe
Confidence            77799999999999999999999998 999999999999999999999999876556679999999865 67775     


Q ss_pred             --c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           76 --Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        76 --p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                        |  |+|++.+||+++.+      |+|++|+|||+|||||+||+++++|||+||+||
T Consensus        79 SkPg~Riy~~~~~l~~~~~------g~G~~IlSTs~Gimt~~eA~~~~iGGeiL~~v~  130 (130)
T PRK00136         79 SKPGLRVYKKKDELPKVLN------GLGIAIVSTSKGVMTDREARKAGVGGEVLCYVW  130 (130)
T ss_pred             cCCCcceEcCHhHHHHHHC------CCCEEEEEcCCCeeeHHHHHHhCCCCEEEEEEC
Confidence              7  99999999999998      799999999999999999999999999999998

>PF00410 Ribosomal_S8: Ribosomal protein S8; InterPro: IPR000630 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.3e-44  Score=257.29  Aligned_cols=119  Identities=34%  Similarity=0.472  Sum_probs=110.9

Q ss_pred             chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCc-ceEEEEEecccCCccccc-------
Q 032980            4 RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRV-GKIKVELLGRVNDCRALT-------   75 (129)
Q Consensus         4 d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~I~Lky~~~k~~~Is-------   75 (129)
                      |+|||+|++||||++++++.|.+ |+|+++.++|++|++||||++|++.++++. ++++|+|||+.++.|+|+       
T Consensus         1 D~lad~l~~I~Na~~~~~~~v~i-p~sk~~~~il~iL~~eGyI~~f~~~~~~~~~~~i~I~Lky~~~~~~~i~~i~~iSk   79 (129)
T PF00410_consen    1 DPLADLLTRIRNASRARKRFVII-PYSKLNLSILKILKKEGYISGFEIIDDNRNGKRIWIELKYRRNGKPVIKKIKRISK   79 (129)
T ss_dssp             SHHHHHHHHHHHHHHTTCSEEEE-EHCHHHHHHHHHHHHTTSEEEEEEEESSSSEEEEEEEESBCSSSSBSSSEEEESSB
T ss_pred             CcHHHHHHHhHHHHHCCCCEEEe-cccHHHHHHHHHHhhccccceeEeeccCCCceEEEEEEccccccchhhhhhhcccC
Confidence            89999999999999999999999 999999999999999999999999887764 679999999655556655       


Q ss_pred             c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           76 Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        76 p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      |  |+|++.+||+++.+      |+|++|+|||+||||++||+++++|||+||+||
T Consensus        80 p~~r~y~~~~~L~~~~~------g~g~~IlSTskGImt~~eA~~~~vGGevL~~V~  129 (129)
T PF00410_consen   80 PGRRVYISYKELPKVKN------GLGILILSTSKGIMTHREARKLNVGGEVLCYVW  129 (129)
T ss_dssp             TTCCCEESGTGSHHSCT------TTSEEEEEETTEEEEHHHHHHHTSEEEEEEEEE
T ss_pred             CCcceecCHHHHHHHhC------CCeEEEEEcCCCcEeHHHHHHcCCCCEEEEEEC
Confidence            4  99999999999997      799999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S8 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S8 is known to bind directly to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups eubacterial, algal and plant chloroplast, cyanelle, archaebacterial and Marchantia polymorpha mitochondrial S8; mammalian and plant S15A; and yeast S22 (S24) ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_H 3O30_O 3O2Z_O 3IZB_H 3U5G_W 3U5C_W 3OTO_H 1AN7_A 2HGR_K 3BBN_H ....

>KOG1754 consensus 40S ribosomal protein S15/S22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.3e-40  Score=232.09  Aligned_cols=129  Identities=48%  Similarity=0.876  Sum_probs=126.6

Q ss_pred             CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCcccccccee
Q 032980            1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQD   79 (129)
Q Consensus         1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy   79 (129)
                      |+. +.|||+|..|+||.++||++|.+.|+|+....||.+|+++|||.+|++.+|++++++.|+|..|.|+|++||||+.
T Consensus         1 m~~~~vLaDalksinNA~krGK~qvlirp~Skvii~FL~vmmkhGyIg~fei~ddhragkivv~L~gRlNkcg~Isprfd   80 (130)
T KOG1754|consen    1 MVRMNVLADALKSINNAEKRGKRQVLIRPSSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD   80 (130)
T ss_pred             CchHHHHHHHHHHhhhHHhcCCceEEecccHHHHHHHHHHHHHcCcccceEEecCCccceEEEecccccccccccccccc
Confidence            565 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           80 IKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      ++.++|++|.+..+|++++|+.+++||.|+|+|+||+.+++|||+||++|
T Consensus        81 V~lkdlek~~n~llpsrqfg~ivltts~Gimdh~ear~k~~gg~ilg~~~  130 (130)
T KOG1754|consen   81 VKLKDLEKWTNSLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKILGFFY  130 (130)
T ss_pred             cccchHHHHHhccCccceeeEEEEecccccccHHHHhHhhcCcccceeeC
Confidence            99999999999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
3iz6_H	130	Localization Of The Small Subunit Ribosomal Protein		1e-34
3zey_J	130	High-resolution Cryo-electron Microscopy Structure		7e-32
2zkq_h	130	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-30
3izb_H	130	Localization Of The Small Subunit Ribosomal Protein		2e-29
1s1h_H	129	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-29
2xzm_H	130	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-29
3jyv_H	125	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-29
3j20_I	130	Promiscuous Behavior Of Proteins In Archaeal Riboso		4e-22
1i6u_A	130	Rna-Protein Interactions: The Crystal Structure Of		2e-21

>pdb|3IZ6|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 130

Iteration: 1
 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 92/125 (73%)
Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +LN+AL+ + NAE+RGK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI VEL
Sbjct: 6   VLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVEL 65
Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D+   EIE +T R LP+RQ+GY+V+TT  G++DHEEA R+NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125
Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130

>pdb|3ZEY|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 130

Iteration: 1
 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 85/125 (68%)
Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +L NALR I  AERRGK  V ++P S V+  FL +M+  GY+ +F++ D HR GKI V L
Sbjct: 6   VLANALRCIAGAERRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKIVVNL 65
Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C A+  R D  A + E +    LP+RQ+G+VV+TT  G++DHEEA  RN GG+V
Sbjct: 66  NGRLNKCGAICPRFDCTARDFEKWVKNILPSRQFGFVVLTTSLGIMDHEEARARNTGGKV 125
Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130

>pdb|2ZKQ|HH Chain h, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 130

Iteration: 1
 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 88/124 (70%)
Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +L +AL++I NAE+RGK  V ++P S V+  FL +M   GY+ +F++ D HR GKI V L
Sbjct: 6   VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNL 65
Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R D++  ++E +    LP+RQ+G++V+TT  G++DHEEA R++ GG++
Sbjct: 66  TGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKI 125
Query: 125 LGYF 128
           LG+F
Sbjct: 126 LGFF 129

>pdb|3IZB|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 130

Iteration: 1
 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 87/125 (69%)
Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +L +AL AI NAE+ GK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI V+L
Sbjct: 6   VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQL 65
Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R ++K  +IE +T   LP RQ+GYV++TT  G++DHEEA R++V G++
Sbjct: 66  NGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKI 125
Query: 125 LGYFH 129
           LG+ +
Sbjct: 126 LGFVY 130

>pdb|1S1H|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 129

Iteration: 1
 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 87/125 (69%)
Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +L +AL AI NAE+ GK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI V+L
Sbjct: 5   VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQL 64
Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R ++K  +IE +T   LP RQ+GYV++TT  G++DHEEA R++V G++
Sbjct: 65  NGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKI 124
Query: 125 LGYFH 129
           LG+ +
Sbjct: 125 LGFVY 129

>pdb|2XZM|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 130

Iteration: 1
 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 86/125 (68%)
Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           IL   L+ +VNAE+ GK  V L+P+S V+  FL IM+  GY+ +F+V D HR  K+ VEL
Sbjct: 6   ILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVEL 65
Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
           +GR+N C  ++ R D+  ++ E +T   LP+RQ+G VV+TT  G+L HEE  +R+ GG++
Sbjct: 66  IGRINKCGVISPRYDVPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRHTGGKI 125
Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130

>pdb|3JYV|H Chain H, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 125

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 87/125 (69%)
Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           +L +AL AI NAE+ GK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI V+L
Sbjct: 1   LLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQL 60
Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
            GR+N C  ++ R ++K  +IE +T   LP RQ+GYV++TT  G++DHEEA R++V G++
Sbjct: 61  NGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKI 120
Query: 125 LGYFH 129
           LG+ +
Sbjct: 121 LGFVY 125

>pdb|3J20|I Chain I, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 130

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 77/124 (62%)
Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           L NAL  I N+ER GK  V ++P S ++   L +M+  GY+ +F+  D  R G  +V+LL
Sbjct: 7   LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLL 66
Query: 66  GRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVL 125
           GR+N   A+  R  +K SE E +  R LP  ++G ++++T  GV+ H+EA+ + +GG+++
Sbjct: 67  GRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLI 126
Query: 126 GYFH 129
            Y +
Sbjct: 127 AYVY 130

>pdb|1I6U|A Chain A, Rna-Protein Interactions: The Crystal Structure Of Ribosomal Protein S8RRNA COMPLEX FROM METHANOCOCCUS Jannaschii Length = 130

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 73/124 (58%)
Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           L NAL  I N ER GK  V ++P S ++   L + +  GY+ +F+  +  R G  KVEL+
Sbjct: 7   LANALNHISNCERVGKKVVYIKPASKLIGRVLKVXQDNGYIGEFEFIEDGRAGIFKVELI 66
Query: 66  GRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVL 125
           G++N C A+  R  +K    E +  R LP R +G ++++T  GV  HEEA +R +GG++L
Sbjct: 67  GKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVXSHEEAKKRGLGGRLL 126
Query: 126 GYFH 129
            Y +
Sbjct: 127 AYVY 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
3u5c_W	130	40S ribosomal protein S22-A; translation, ribosome	3e-44
2xzm_H	130	Ribosomal protein S8 containing protein; ribosome,	2e-43
1i6u_A	130	30S ribosomal protein S8P; protein-RNA interaction	9e-38
3bbn_H	134	Ribosomal protein S8; small ribosomal subunit, spi	5e-09
2vqe_H	138	30S ribosomal protein S8, 30S ribosomal protein S6	2e-08
1sei_A	130	Ribosomal protein S8; prokaryotic, rRNA-binding; 1	1e-07
1s03_H	129	30S ribosomal protein S8; protein-RNA complex, SPC	1e-06
3rf2_A	168	30S ribosomal protein S8; RNA-binding protein, hyp	1e-04

>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h Length = 130

 Score =  139 bits (354), Expect = 3e-44
 Identities = 57/123 (46%), Positives = 85/123 (69%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           L +AL AI NAE+ GK  V ++P S V+  FL +M+  GY+ +F+  D HR GKI V+L 
Sbjct: 7   LADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLN 66

Query: 66  GRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVL 125
           GR+N C  ++ R ++K  +IE +T   LP RQ+GYV++TT  G++DHEEA R++V G++L
Sbjct: 67  GRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKIL 126

Query: 126 GYF 128
           G+ 
Sbjct: 127 GFV 129

>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H Length = 130

 Score =  138 bits (349), Expect = 2e-43
 Identities = 57/124 (45%), Positives = 85/124 (68%)

Query: 5   ILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVEL 64
           IL   L+ +VNAE+ GK  V L+P+S V+  FL IM+  GY+ +F+V D HR  K+ VEL
Sbjct: 6   ILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVEL 65

Query: 65  LGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
           +GR+N C  ++ R D+  ++ E +T   LP+RQ+G VV+TT  G+L HEE  +R+ GG++
Sbjct: 66  IGRINKCGVISPRYDVPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRHTGGKI 125

Query: 125 LGYF 128
           LG+F
Sbjct: 126 LGFF 129

>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1 Length = 130

 Score =  123 bits (311), Expect = 9e-38
 Identities = 48/123 (39%), Positives = 74/123 (60%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           L NAL  I N ER GK  V ++P S ++   L +M+  GY+ +F+  +  R G  KVEL+
Sbjct: 7   LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELI 66

Query: 66  GRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVL 125
           G++N C A+  R  +K    E +  R LP R +G ++++T  GV+ HEEA +R +GG++L
Sbjct: 67  GKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLL 126

Query: 126 GYF 128
            Y 
Sbjct: 127 AYV 129

>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 134

 Score = 49.8 bits (120), Expect = 5e-09
 Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 27/131 (20%)

Query: 13  IVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCR 72
           I NA+   K TV +   + +  + + I+   G++++ + +       + + L        
Sbjct: 13  IRNADMNRKGTVRI-VSTNITENIVKILLREGFIENARKHQERNKYFLVLTL-------- 63

Query: 73  ALTYRQDIKASEIEGYTVR--------------ALPTRQWGY--VVITTPDGVLDHEEAL 116
              +R++ K   +  + ++               +P    G    +++T  G++   EA 
Sbjct: 64  --RHRRNKKGPYLNTFHLKRVSRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREAR 121

Query: 117 RRNVGGQVLGY 127
              +GG++L Y
Sbjct: 122 LEGIGGEILCY 132

>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ... Length = 138

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 31/135 (22%)

Query: 13  IVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCR 72
           I NA R  K + ++ P S      L I+   G++K ++  D      ++V          
Sbjct: 13  IRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVY--------- 62

Query: 73  ALTYRQDIKASEIEGYTV------------------RALPTRQWGY--VVITTPDGVLDH 112
            L Y    +  +     V                  + +P  + G    +++T  GVL  
Sbjct: 63  -LKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTD 121

Query: 113 EEALRRNVGGQVLGY 127
            EA +  VGG+++  
Sbjct: 122 REARKLGVGGELICE 136

>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1 Length = 130

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 27/129 (20%)

Query: 13  IVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCR 72
           I NA       +E+ P S +      I+K  G+++D++  + ++ G +++          
Sbjct: 13  IRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIF--------- 62

Query: 73  ALTYRQDIKASEIEG-----------YT-VRALPTRQWGY--VVITTPDGVLDHEEALRR 118
            L Y        I G           Y     +P    G    +++T  GVL  +EA ++
Sbjct: 63  -LKYGP--NERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQK 119

Query: 119 NVGGQVLGY 127
             GG+++ Y
Sbjct: 120 GTGGEIIAY 128

>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ... Length = 129

 Score = 43.6 bits (104), Expect = 1e-06
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 28/129 (21%)

Query: 13  IVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCR 72
           I N +   KA V + P S +  +  N++K  G+++DF+V    +  ++++          
Sbjct: 13  IRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTK-PELELT--------- 61

Query: 73  ALTYRQDIKASEIEG-----------YT-VRALPTRQWGY--VVITTPDGVLDHEEALRR 118
            L Y Q      +E            Y     LP    G    V++T  GV+    A + 
Sbjct: 62  -LKYFQGKAV--VESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQA 118

Query: 119 NVGGQVLGY 127
            +GG+++ Y
Sbjct: 119 GLGGEIICY 127

>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus} Length = 168

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 40/154 (25%)

Query: 13  IVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCR 72
           I NA  R    + + P S +    L+++K  G+++D++     +  +   ++        
Sbjct: 14  IKNAIMRRDDFLYV-PSSKLKERILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSP 72

Query: 73  ------------------------ALTYRQDIK-ASEIEG-----------YT-VRALPT 95
                                    L Y    K  S I             Y  VR +P 
Sbjct: 73  NPKMKRYLKQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGGRRVYAGVRTMPY 132

Query: 96  RQWGY--VVITTPDGVLDHEEALRRNVGGQVLGY 127
            + G    +++T  GV+   EA R   GG+V+ +
Sbjct: 133 VKRGLGIAIVSTDAGVMTDHEARRMRKGGEVIAF 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3u5c_W	130	40S ribosomal protein S22-A; translation, ribosome	100.0
1i6u_A	130	30S ribosomal protein S8P; protein-RNA interaction	100.0
2xzm_H	130	Ribosomal protein S8 containing protein; ribosome,	100.0
2vqe_H	138	30S ribosomal protein S8, 30S ribosomal protein S6	100.0
3bbn_H	134	Ribosomal protein S8; small ribosomal subunit, spi	100.0
1sei_A	130	Ribosomal protein S8; prokaryotic, rRNA-binding; 1	100.0
1s03_H	129	30S ribosomal protein S8; protein-RNA complex, SPC	100.0
3rf2_A	168	30S ribosomal protein S8; RNA-binding protein, hyp	100.0

>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h

Probab=100.00  E-value=2.9e-54  Score=309.08  Aligned_cols=129  Identities=46%  Similarity=0.820  Sum_probs=125.1

Q ss_pred             CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCcccccccee
Q 032980            1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQD   79 (129)
Q Consensus         1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy   79 (129)
                      |+. |+||||||+||||.+++|+.|.+.|+||++.+||++|++||||++|++.+|++++++||+|||+.++|++||||+|
T Consensus         1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~r~~k~~~ISpR~y   80 (130)
T 3u5c_W            1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFN   80 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCB
T ss_pred             CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeeccCCCceEEEEEccccCCCCeEEccee
Confidence            775 9999999999999999999998679999999999999999999999999998899999999999999999999999


Q ss_pred             ecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           80 IKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      ++.+|||+|.+|++|++|+|++|||||+|||||+|||++++|||+||+||
T Consensus        81 ~~~~el~kv~~g~lp~~~~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~  130 (130)
T 3u5c_W           81 VKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY  130 (130)
T ss_dssp             CCSSHHHHHHHHHCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             cCHHHhHHHHcCCCCCCCceEEEEEcCCCceeHHHHHHhCCCCEEEEEEC
Confidence            99999999999999999999999999999999999999999999999998

>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1

Probab=100.00  E-value=1.6e-53  Score=305.25  Aligned_cols=129  Identities=38%  Similarity=0.685  Sum_probs=124.5

Q ss_pred             CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCcccccccee
Q 032980            1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQD   79 (129)
Q Consensus         1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy   79 (129)
                      |++ ||||||||+||||++++|++|.+.|+||++.+||++|++||||++|++.+++.++++||+|||+.+++++||||+|
T Consensus         1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y   80 (130)
T 1i6u_A            1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFP   80 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCE
T ss_pred             CCccCHHHHHHHHhHHHHHcCCCEEEEECchHHHHHHHHHHHHCCccccEEEEecCCceEEEEEEeeecccCCEEECCee
Confidence            775 9999999999999999999999779999999999999999999999998887788999999999999999999999


Q ss_pred             ecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           80 IKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      ++.+|||+|.++++|+.|+|++|||||+|||||+|||++++|||+||+||
T Consensus        81 ~~~~~l~kv~~~~lp~~g~G~~IlSTs~Gimt~~eAr~~~vGGevL~~v~  130 (130)
T 1i6u_A           81 VKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY  130 (130)
T ss_dssp             ECTTCCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             cChhhhHHHHhccCCCCCceEEEEECCcCceeHHHHHHcCCCCEEEEEEC
Confidence            99999999999999999999999999999999999999999999999999

>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H

Probab=100.00  E-value=1.2e-53  Score=305.86  Aligned_cols=129  Identities=45%  Similarity=0.808  Sum_probs=124.7

Q ss_pred             CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCcccccccee
Q 032980            1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQD   79 (129)
Q Consensus         1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy   79 (129)
                      |++ ||||||||+||||++++|++|.+.|+||++.+||++|++||||++|++.+++.++++||+|||..+++.+||||+|
T Consensus         1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y   80 (130)
T 2xzm_H            1 MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVELIGRINKCGVISPRYD   80 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHTSSCCEEEECCSSSCEEEEECCSCCCCEEECTTCCB
T ss_pred             CCccCHHHHHHHHhHHHHHcCCCEEEEEcchHHHHHHHHHHHHCCCcceEEEEecCCceEEEEEEecccccCcEEECcee
Confidence            775 9999999999999999999999779999999999999999999999998888788999999999999999999999


Q ss_pred             ecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           80 IKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      ++.+|||+|.++++|+.|+|++|||||+|||||+|||++++|||+||+||
T Consensus        81 ~~~~~l~kv~~~~lp~~g~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~  130 (130)
T 2xzm_H           81 VPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRHTGGKILGFFY  130 (130)
T ss_dssp             CCGGGHHHHHHHHSSSTTCCCCCEECSSCEECTTHHHHTTCCCEECEEEC
T ss_pred             CCHHHhHHHHhccCCCCCceEEEEECCccceeHHHHHHcCCCCEEEEEEC
Confidence            99999999999999999999999999999999999999999999999999

>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...

Probab=100.00  E-value=5.4e-50  Score=289.37  Aligned_cols=122  Identities=24%  Similarity=0.312  Sum_probs=116.6

Q ss_pred             CCCchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCC-------ccc
Q 032980            1 MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVND-------CRA   73 (129)
Q Consensus         1 M~~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k-------~~~   73 (129)
                      |.+||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++.+++.++.++|+|||+.++       +|+
T Consensus         1 m~~d~iad~ltrIrNA~~~~k~~V~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~~~~~~~~~~~v   79 (138)
T 2vqe_H            1 MLTDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQV   79 (138)
T ss_dssp             CCSCHHHHHHHHHHHHHHTTCSCCCC-BCCHHHHHHHHHHHHTTSSSEEEEEEETTEEEEEEECCBCCCCSSSCCCCCBS
T ss_pred             CccchHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHHcCcceeEEEEecCCceEEEEEEecCcCCccccccCCcc
Confidence            66799999999999999999999998 9999999999999999999999988877788999999997676       899


Q ss_pred             cc-------c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           74 LT-------Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        74 Is-------p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      |+       |  |+|++.+|||+|.+      |+|++|||||+|||||+|||++++|||+||+||
T Consensus        80 I~~ikriSkPg~Riy~~~~~lpkv~~------g~Gi~IlSTskGimt~~eAr~~~vGGEvLc~v~  138 (138)
T 2vqe_H           80 IHHIRRISKPGRRVYVGVKEIPRVRR------GLGIAILSTSKGVLTDREARKLGVGGELICEVW  138 (138)
T ss_dssp             CSCEEECSBTTBCCEECGGGCCCGGG------GTSEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             ccccEEecCCCcceEeCHHHHHHHhC------CceEEEEECCCCceeHHHHHHcCCCCEEEEEEC
Confidence            88       6  99999999999998      699999999999999999999999999999999

>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=2.3e-49  Score=284.84  Aligned_cols=120  Identities=18%  Similarity=0.314  Sum_probs=114.8

Q ss_pred             CCCchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeC-CCcceEEEEEecccCCccccc----
Q 032980            1 MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDP-HRVGKIKVELLGRVNDCRALT----   75 (129)
Q Consensus         1 M~~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~-~~~~~i~I~Lky~~~k~~~Is----   75 (129)
                      |.+||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++.++ +. +++||+||| .+++|+|+    
T Consensus         1 m~~d~iad~lt~IrNA~~~~k~~V~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~v~Lky-~~~~~vI~p~~~   77 (134)
T 3bbn_H            1 MGKDTIADIITCIRNADMNRKGTVRI-VSTNITENIVKILLREGFIENARKHQERNK-YFLVLTLRH-RRNKKGPYLNTF   77 (134)
T ss_dssp             CCSCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHTHHHHTTTSSSCEEEEESSSC-EEEEEECCB-CCCSSSCCBSCS
T ss_pred             CcccHHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHHCCcceeEEEEecCCC-cEEEEEEec-CCCCceeecccc
Confidence            66799999999999999999999998 999999999999999999999999887 77 899999999 67789998    


Q ss_pred             -------c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           76 -------Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        76 -------p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                             |  |+|++.+|||+|.+      |+|++|||||+|||||+|||++++|||+||+||
T Consensus        78 ~ikriSkPg~Riy~~~~~lpkv~~------g~Gi~IlSTskGimt~~eAr~~~vGGevLc~v~  134 (134)
T 3bbn_H           78 HLKRVSRPGLRIYSNYQRIPRILG------GMGIAILSTSRGIMTDREARLEGIGGEILCYIW  134 (134)
T ss_dssp             CEEESSBTTBCCEECSSSCCCGGG------TTSEEEEEESSSEECTTHHHHHTCCEEEEEEEC
T ss_pred             ccEEecCCCcceEcCHHHHHHHhC------CceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence                   5  99999999999998      799999999999999999999999999999999

>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1

Probab=100.00  E-value=2.6e-49  Score=283.40  Aligned_cols=118  Identities=26%  Similarity=0.451  Sum_probs=113.3

Q ss_pred             chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccc-------c
Q 032980            4 RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALT-------Y   76 (129)
Q Consensus         4 d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~Is-------p   76 (129)
                      ||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++.+++.+++++|+|||+.+ +|+|+       |
T Consensus         4 d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~-~~vI~~i~rISkP   81 (130)
T 1sei_A            4 DPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPN-ERVITGLKRISKP   81 (130)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSS-SBSCCCEEECCBT
T ss_pred             ChHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHHCCCceeEEEEecCCccEEEEEEecCCC-CcceeeeEEEcCC
Confidence            99999999999999999999998 999999999999999999999999888878899999999866 78777       6


Q ss_pred             --ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           77 --RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        77 --Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                        |+|++.+|||+|.+      |+|++|||||+|||||+|||++++|||+||+||
T Consensus        82 g~R~y~~~~~l~~v~~------g~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~  130 (130)
T 1sei_A           82 GLRVYVKAHEVPRVLN------GLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI  130 (130)
T ss_dssp             TBCCEECGGGCCCCCT------TSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             CCeeEcCHHHHHHHhC------CCeEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence              99999999999998      799999999999999999999999999999999

>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...

Probab=100.00  E-value=1e-48  Score=279.94  Aligned_cols=118  Identities=22%  Similarity=0.392  Sum_probs=112.0

Q ss_pred             CchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccc-------
Q 032980            3 RRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALT-------   75 (129)
Q Consensus         3 ~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~Is-------   75 (129)
                      +||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++ +++.++++||+||| .+++|+|+       
T Consensus         3 ~d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~eGyI~~~~~-~~~~~~~i~v~Lky-~~~~~vI~~i~rISk   79 (129)
T 1s03_H            3 QDPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKV-EGDTKPELELTLKY-FQGKAVVESIQRVSR   79 (129)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEE-ECSSSCEEEEEECB-SSSSBSCSCEEECSB
T ss_pred             cChHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHHCCcceeEEE-cCCCceEEEEEEec-CCCCcccccceEEcC
Confidence            499999999999999999999998 999999999999999999999998 66668899999999 56678877       


Q ss_pred             c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           76 Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        76 p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      |  |+|++.+|||+|.+      |+|++|||||+|||||+|||++++|||+||+||
T Consensus        80 Pg~R~y~~~~~l~kv~~------g~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~  129 (129)
T 1s03_H           80 PGLRIYKRKDELPKVMA------GLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA  129 (129)
T ss_dssp             TTBCCEECGGGSCCSCS------SSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             CCcceEcCHHHHHHHhC------CceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence            6  99999999999998      799999999999999999999999999999998

>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}

Probab=100.00  E-value=7.5e-48  Score=285.54  Aligned_cols=122  Identities=23%  Similarity=0.303  Sum_probs=112.4

Q ss_pred             CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCC------------------------
Q 032980            1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPH------------------------   55 (129)
Q Consensus         1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~------------------------   55 (129)
                      |++ |+|||||||||||.+|+|+.|.+ |+||++.+|+++|++||||++|++.+++                        
T Consensus         1 m~~~d~iad~lt~IrNA~~ar~~~v~i-P~Skl~~~i~~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   79 (168)
T 3rf2_A            1 MSAVDPIADMFSAIKNAIMRRDDFLYV-PSSKLKERILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSPNPKMKRY   79 (168)
T ss_dssp             ---CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHHTSEEEEEECCHHHHHHHHHHHHHHHHSSCCSSSHHH
T ss_pred             CCcccHHHHHHHHHHHHHHcCCCEEEe-cccHHHHHHHHHHHHCCCccceEEecCCccccccccccccccCCCccccccc
Confidence            775 99999999999999999999998 9999999999999999999999998765                        


Q ss_pred             ----------CcceEEEEEecccC--Cccccc-------c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHH
Q 032980           56 ----------RVGKIKVELLGRVN--DCRALT-------Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEE  114 (129)
Q Consensus        56 ----------~~~~i~I~Lky~~~--k~~~Is-------p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~e  114 (129)
                                .++++||.|||+++  ++|+|+       |  |+|++.+||++|.+      |+|++|||||+|||||+|
T Consensus        80 ~~~~t~~n~~~~~~l~v~LKY~~~~~k~pvI~~lkrISKPg~Riy~~~~eLprv~~------GlGi~IlSTskGImt~rE  153 (168)
T 3rf2_A           80 LKQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGGRRVYAGVRTMPYVKR------GLGIAIVSTDAGVMTDHE  153 (168)
T ss_dssp             HHHHHHTTSTTCCEEEEEECBSSTTSCSBSCSCEEECSCSSSCCEECSTTCCCSGG------GTSEEEEEETTEEEEHHH
T ss_pred             ccccccccccccceEEEEEEeecCCCCCccccccEEecCCCceEEcCHHHHHHHHc------CCcEEEEEcCCcceeHHH
Confidence                      57899999999743  488884       8  99999999999998      699999999999999999


Q ss_pred             HHHcCCCeEEEEEEC
Q 032980          115 ALRRNVGGQVLGYFH  129 (129)
Q Consensus       115 A~~~~~GGevL~~v~  129 (129)
                      |+++++|||+||+||
T Consensus       154 Ar~~~vGGevLc~Vw  168 (168)
T 3rf2_A          154 ARRMRKGGEVIAFVW  168 (168)
T ss_dssp             HHHTTCCEEEEEEEC
T ss_pred             HHHhCCCCEEEEEEC
Confidence            999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1i6ua_	129	d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Meth	3e-31
d1seia_	130	d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stea	4e-23
d2gy9h1	126	d.140.1.1 (H:3-128) Ribosomal protein S8 {Escheric	1e-18
d1an7a_	136	d.140.1.1 (A:) Ribosomal protein S8 {Thermus therm	2e-16

>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  106 bits (265), Expect = 3e-31
 Identities = 48/123 (39%), Positives = 74/123 (60%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           L NAL  I N ER GK  V ++P S ++   L +M+  GY+ +F+  +  R G  KVEL+
Sbjct: 6   LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELI 65

Query: 66  GRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVL 125
           G++N C A+  R  +K    E +  R LP R +G ++++T  GV+ HEEA +R +GG++L
Sbjct: 66  GKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLL 125

Query: 126 GYF 128
            Y 
Sbjct: 126 AYV 128

>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]} Length = 130

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 85.4 bits (211), Expect = 4e-23
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           + + L AI NA       +E+ P S +      I+K  G+++D++  + ++ G +++ L 
Sbjct: 6   IADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFL- 63

Query: 66  GRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGY---VVITTPDGVLDHEEALRRNVGG 122
               + R +T  + I    +  Y       R        +++T  GVL  +EA ++  GG
Sbjct: 64  KYGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGG 123

Query: 123 QVLGY 127
           +++ Y
Sbjct: 124 EIIAY 128

>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Escherichia coli [TaxId: 562]

 Score = 73.8 bits (181), Expect = 1e-18
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           + + L  I N +   KA V + P S +  +  N++K  G+++DF+V    +  ++++ L 
Sbjct: 4   IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTK-PELELTLK 61

Query: 66  GRVNDCRALTYRQDIKAS---EIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGG 122
                   +   Q +        +            G  V++T  GV+    A +  +GG
Sbjct: 62  YF-QGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGG 120

Query: 123 QVLGY 127
           +++ Y
Sbjct: 121 EIICY 125

>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]} Length = 136

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Thermus thermophilus [TaxId: 274]

 Score = 68.5 bits (167), Expect = 2e-16
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 13/133 (9%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           + + L  I NA R  K + ++ P S      L I+   G++K ++  D      ++V L 
Sbjct: 4   IADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLK 62

Query: 66  GRVNDCRALTYRQDIKASEIE-----------GYTVRALPTRQWGYVVITTPDGVLDHEE 114
                      R +     I            G        R  G  +++T  GVL   E
Sbjct: 63  YGPRRQ-GPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDRE 121

Query: 115 ALRRNVGGQVLGY 127
           A +  VGG+++  
Sbjct: 122 ARKLGVGGELICE 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1i6ua_	129	Ribosomal protein S8 {Archaeon Methanococcus janna	100.0
d1seia_	130	Ribosomal protein S8 {Bacillus stearothermophilus	100.0
d1an7a_	136	Ribosomal protein S8 {Thermus thermophilus [TaxId:	100.0
d2gy9h1	126	Ribosomal protein S8 {Escherichia coli [TaxId: 562	100.0

>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.1e-46  Score=267.78  Aligned_cols=126  Identities=38%  Similarity=0.695  Sum_probs=114.6

Q ss_pred             chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccccceeeccc
Q 032980            4 RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQDIKAS   83 (129)
Q Consensus         4 d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy~~~~   83 (129)
                      ||||||||+||||++|+|+.|.+.|+||++.+||++|++||||++|++.++++++.+.|+|+|+.+++|+|+|+..++..
T Consensus         4 D~iaD~ltrIrNA~~~~~~~V~i~P~Skl~~~Il~iL~~eGyI~~~~~~~~~~~~~i~i~L~~~~~~~~~I~~~~~vskp   83 (129)
T d1i6ua_           4 DPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFPVKKF   83 (129)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCEECTT
T ss_pred             cHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHHHHHHHhhhccccCCCceeEEEecccccCccccceEeeecc
Confidence            99999999999999999999996699999999999999999999999988888899999999998889999975555666


Q ss_pred             chhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           84 EIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        84 ~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                      ..+.+...+.|..|+|++|||||+|||||+|||++|+|||+||+||
T Consensus        84 ~~r~~~~~~~~~~glGi~IlSTSkGimt~~eAr~~~vGGEiLc~V~  129 (129)
T d1i6ua_          84 GYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY  129 (129)
T ss_dssp             CCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             cccchhhccCCCCCCeEEEEECCccccCHHHHHHcCCCceEEEEEC
Confidence            6666655556677999999999999999999999999999999999

>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.4e-46  Score=267.11  Aligned_cols=120  Identities=27%  Similarity=0.468  Sum_probs=113.2

Q ss_pred             CCCchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccc-----
Q 032980            1 MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALT-----   75 (129)
Q Consensus         1 M~~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~Is-----   75 (129)
                      |+ |||||||++||||++++|+.|.+ |+||++.++|++|++||||++|++.++++.+.++|.|||..++ |+|+     
T Consensus         2 m~-D~iaD~lt~IrNA~~a~k~~V~i-p~Skl~~~il~vL~~eGyI~~f~~~~~~~~~~i~v~Lk~~~~~-~~i~~~~~v   78 (130)
T d1seia_           2 MT-DPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPNE-RVITGLKRI   78 (130)
T ss_dssp             CS-HHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSSS-BSCCCEEEC
T ss_pred             cc-chHHHHHHHHHHHHHcCCCEEEe-cCcHHHHHHHHHHHHhcccceeEEeeccCCceEEEEecccCCc-cccccceec
Confidence            53 99999999999999999999998 9999999999999999999999999988888999999998875 4554     


Q ss_pred             --c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           76 --Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        76 --p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                        |  |+|++.++||++.+      ++|++|||||+|+|||+||+++++|||+||+||
T Consensus        79 Skpg~r~y~~~~~l~~~~~------g~G~~IvSTskGimt~~eA~~~~iGGell~~Vf  130 (130)
T d1seia_          79 SKPGLRVYVKAHEVPRVLN------GLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI  130 (130)
T ss_dssp             CBTTBCCEECGGGCCCCCT------TSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             ccCCeEEEcchhhhhhhhh------hceEEEEECCCCeeeHHHHHHhCCCcEEEEEEC
Confidence              6  99999999999998      799999999999999999999999999999997

>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.8e-44  Score=254.96  Aligned_cols=120  Identities=23%  Similarity=0.318  Sum_probs=109.6

Q ss_pred             CchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCC-------ccccc
Q 032980            3 RRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVND-------CRALT   75 (129)
Q Consensus         3 ~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k-------~~~Is   75 (129)
                      +|||||||++||||++++|..|.+ |+|+++.+||++|++||||++|++.+++....+.+.++|..+.       .|+|+
T Consensus         1 tD~iaD~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   79 (136)
T d1an7a_           1 TDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIH   79 (136)
T ss_dssp             CCHHHHHHHHHHHHHTTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEECEEEECSSSCCSEEESCC
T ss_pred             CCcHHHHHHHHHhHHHcCCCEEEe-cccHHHHHHHHHHHHCCcccceEEeccCCcceeeeeeehhhhcccCCCCCCcccc
Confidence            499999999999999999999998 9999999999999999999999999887777888888875432       23343


Q ss_pred             -------c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980           76 -------Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH  129 (129)
Q Consensus        76 -------p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~  129 (129)
                             |  |+|++.+||+++.+      |+|++|||||+|||||+||+++++|||+||+||
T Consensus        80 ~i~~vSkP~~Rvy~~~~~l~~~~~------g~G~~IlSTskGimt~~eA~~~~iGGe~L~~v~  136 (136)
T d1an7a_          80 HIRRISKPGRRVYVGVKEIPRVRR------GLGIAILSTSKGVLTDREARKLGVGGELICEVW  136 (136)
T ss_dssp             CEEECSBTTBCCEECGGGCCCGGG------GTSEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             eeEEeccCCcccccCcchhhhccC------CeEEEEEeCCCCeeeHHHHHHcCCCCEEEEEEC
Confidence                   6  99999999999998      699999999999999999999999999999999

>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-44  Score=253.65  Aligned_cols=116  Identities=22%  Similarity=0.377  Sum_probs=108.6

Q ss_pred             chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccc-------c
Q 032980            4 RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALT-------Y   76 (129)
Q Consensus         4 d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~Is-------p   76 (129)
                      |||||+|++||||++++|..|.+ |+|+++.++|++|++||||.+|++.+++ +..++|.|||+.++ |+|+       |
T Consensus         2 D~iaD~l~~I~NA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~f~~~~~~-k~~i~i~Lky~~~k-~vI~~~~~vSkp   78 (126)
T d2gy9h1           2 DPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDT-KPELELTLKYFQGK-AVVESIQRVSRP   78 (126)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEECC-BCCHHHHHHHHHHHHHTSEEEEEEECSS-SCEEEEEECCCSSS-CSCSCCEECSCS
T ss_pred             CcHHHHHHHhHhHHHcCCCEEEe-eCcHHHHHHHHHHHhcCcccccEEecCC-CceEEEEEeccCCC-EEEecceEeecC
Confidence            99999999999999999999998 9999999999999999999999987654 56899999998775 5665       6


Q ss_pred             --ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEE
Q 032980           77 --RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF  128 (129)
Q Consensus        77 --Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v  128 (129)
                        |+|++.++|+++.+      |+|++|+|||+|||||+||+++++|||+||+|
T Consensus        79 ~~r~y~~~~~l~~~~~------g~G~~IlSTskGimt~~eA~~~~vGGelL~~V  126 (126)
T d2gy9h1          79 GLRIYKRKDELPKVMA------GLGIAVVSTSKGVMTDRAARQAGLGGEIICYV  126 (126)
T ss_dssp             SSCCBCCTTTCCCGGG------GTSCEEEEETTEEEEHHHHHHHTCCCEEEEEC
T ss_pred             CcccccchhhhhhccC------ceeEEEecCCCceEEHHHHHHhCCCcEEEEEC
Confidence              99999999999998      69999999999999999999999999999997