Citrus Sinensis ID: 032981

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MRAFGAFQRSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQKENFEFWRCLLKL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHcccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcHHHHHccccccccEEEEcccEEcccccccccccccccEEEEcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrafgafqRSSLLLRRRrannepyalvpsgsfctdngfettsngssrvSIFDRHLKRKQRDRaawltrpndsfVDAVAENLLDRLEDCRKtfptalclggSLEAVRRLLRGRVVLQKENFEFWRCLLKL
Flexible Loop (DISEMBL)
mrafgafqrsslllrRRRANnepyalvpsgsfctdngfettsngssrvsifdrhLKRKQRdraawltrpndsfvDAVAENLLDRLEDCRKTFptalclggslEAVRRLLRGrvvlqkenfefwrcllkl
Low Complexity Region (SEG)
MRAFGAFQrsslllrrrrANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAvrrllrgrvvlQKENFEFWRCLLKL
Disordered region (IsUnstruct)
************************ALV**GSFCT***************IF**********RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQKENFEFWRCLL**
Disordered Region (DISOPRED)
*********S**LLRRRRANNEPYALV**********************IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG**VLQKENFEFWRCLLKL
Disordered Region (DISEMBL)
MRAFGAFQRSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQKENFEFWRCLLKL
Disordered Region (DISPRO)
**********SLLLRRRRANNEPYALVPSGSFCTDNGF*****GSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQKENFEFWRCLLKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRAFGAFQRSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQKENFEFWRCLLKL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
O80543	355	Putative methyltransferas	yes	no	0.813	0.295	0.567	2e-26

>sp|O80543|Y1280_ARATH Putative methyltransferase At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 6/111 (5%)

Query: 13  LLRR--RRANNEPYALVPSGSFCTDNGFETTS---NGSSRVSIFDRHLKRKQRDRAAWLT 67
           LL+R   ++  + +  + S SF T+  +         SS+V IFDR LKR  RDRAAWL+
Sbjct: 13  LLKRVPEKSTKQAHTFLASLSFSTEGAYGGDGEFQQNSSKVKIFDRDLKRIHRDRAAWLS 72

Query: 68  R-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           R  NDSFVDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGR  ++K
Sbjct: 73  RQKNDSFVDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEK 123

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
224135749	121	predicted protein [Populus trichocarpa]	0.798	0.851	0.714	9e-31
225460187	339	PREDICTED: uncharacterized protein At1g2	0.759	0.289	0.683	1e-29
297741046	348	unnamed protein product [Vitis vinifera]	0.759	0.281	0.683	1e-29
449447597	177	PREDICTED: putative methyltransferase At	0.837	0.610	0.646	1e-28
255574259	336	conserved hypothetical protein [Ricinus	0.720	0.276	0.653	2e-28
297845308	355	hypothetical protein ARALYDRAFT_889792 [	0.806	0.292	0.598	4e-25
15219953	355	S-adenosyl-L-methionine-dependent methyl	0.813	0.295	0.567	2e-24
223975545	343	unknown [Zea mays] gi|413916686|gb|AFW56	0.713	0.268	0.608	5e-24
413916684	154	hypothetical protein ZEAMMB73_760336 [Ze	0.713	0.597	0.608	5e-24
413916685	181	hypothetical protein ZEAMMB73_760336 [Ze	0.713	0.508	0.608	6e-24

>gi|224135749|ref|XP_002327294.1| predicted protein [Populus trichocarpa] gi|222835664|gb|EEE74099.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 10  SSLLLR-RRRANNEPYALVPSGSFCTDNGFETTSNGSS-RVSIFDRHLKRKQRDRAAWLT 67
           S LLLR RRRA  E   L+PS S+CT+    T     S RV IFDR LKRKQRDRAAWL 
Sbjct: 12  SQLLLRGRRRATKETDTLIPSISYCTNIDNNTIDGPQSPRVKIFDRELKRKQRDRAAWLM 71

Query: 68  RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112
           RP+D FVDAVA+NLLDRLEDC+KTFPTALCLGGS EAVRRLL GR
Sbjct: 72  RPSDPFVDAVADNLLDRLEDCKKTFPTALCLGGSSEAVRRLLHGR 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460187|ref|XP_002279511.1| PREDICTED: uncharacterized protein At1g22800 [Vitis vinifera]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 75/101 (74%), Gaps = 3/101 (2%)

Query: 17  RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDA 76
           RR   EP++    GS  TDNG       SSRV IFDRHLKRKQRDRAAWL  P D  VD 
Sbjct: 10  RRRVQEPFSRFFYGSLSTDNG---DGFQSSRVKIFDRHLKRKQRDRAAWLACPKDPLVDT 66

Query: 77  VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           VAENLLDRLEDC+K FPTALCLGGSLEA+RRLLRGR  ++K
Sbjct: 67  VAENLLDRLEDCKKAFPTALCLGGSLEAIRRLLRGRGAIEK 107

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741046|emb|CBI31358.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 75/101 (74%), Gaps = 3/101 (2%)

Query: 17  RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDA 76
           RR   EP++    GS  TDNG       SSRV IFDRHLKRKQRDRAAWL  P D  VD 
Sbjct: 19  RRRVQEPFSRFFYGSLSTDNG---DGFQSSRVKIFDRHLKRKQRDRAAWLACPKDPLVDT 75

Query: 77  VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           VAENLLDRLEDC+K FPTALCLGGSLEA+RRLLRGR  ++K
Sbjct: 76  VAENLLDRLEDCKKAFPTALCLGGSLEAIRRLLRGRGAIEK 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447597|ref|XP_004141554.1| PREDICTED: putative methyltransferase At1g22800-like [Cucumis sativus]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 85/113 (75%), Gaps = 5/113 (4%)

Query: 9   RSSLLLRRRRANNEPYALVPSGSFCT--DNGFETTSNG--SSRVSIFDRHLKRKQRDRAA 64
           RS  LLR  R  + P +++   SFCT  DN      +G  SS+V +FDR LKRKQRDRAA
Sbjct: 11  RSFSLLRSTRWRDSPNSIL-CCSFCTGDDNYDGRIGDGMQSSKVKVFDRDLKRKQRDRAA 69

Query: 65  WLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           WL RP DS VD+VAENLLDRLEDC+KTFPTALCLGGSLEA+RRLLRGR  ++K
Sbjct: 70  WLMRPKDSLVDSVAENLLDRLEDCKKTFPTALCLGGSLEAIRRLLRGRGSVEK 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574259|ref|XP_002528044.1| conserved hypothetical protein [Ricinus communis] gi|223532574|gb|EEF34362.1| conserved hypothetical protein [Ricinus communis]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 77/101 (76%), Gaps = 8/101 (7%)

Query: 17  RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDA 76
           RRA    YA   S S+CT+         +SRV IFDRHLKR QRDRAAWL RPNDSFV+A
Sbjct: 13  RRAYEPIYAFFQSTSYCTE--------ANSRVKIFDRHLKRVQRDRAAWLMRPNDSFVNA 64

Query: 77  VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           VA+NLLDRLEDC+KTFP+AL LGGSL+A+RR LRGR  ++K
Sbjct: 65  VADNLLDRLEDCKKTFPSALFLGGSLDAIRRSLRGRGSIEK 105

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845308|ref|XP_002890535.1| hypothetical protein ARALYDRAFT_889792 [Arabidopsis lyrata subsp. lyrata] gi|297336377|gb|EFH66794.1| hypothetical protein ARALYDRAFT_889792 [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 81/112 (72%), Gaps = 8/112 (7%)

Query: 13  LLRR--RRANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWL 66
           +LRR    +  + + L+ S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL
Sbjct: 13  MLRRVPEESTKKSHTLLASLSFSTEGSYGGDGELQQN-SSKVKIFDRDLKRIHRDRAAWL 71

Query: 67  TR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           +R  NDSFVDAVAENLLDRLEDC+K+FPTA CLGGSL AV+RLLRGR  ++K
Sbjct: 72  SRQKNDSFVDAVAENLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEK 123

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219953|ref|NP_173694.1| S-adenosyl-L-methionine-dependent methyltransferases-like protein [Arabidopsis thaliana] gi|84028281|sp|O80543.2|Y1280_ARATH RecName: Full=Putative methyltransferase At1g22800 gi|30102638|gb|AAP21237.1| At1g22800 [Arabidopsis thaliana] gi|110736002|dbj|BAE99975.1| hypothetical protein [Arabidopsis thaliana] gi|332192169|gb|AEE30290.1| S-adenosyl-L-methionine-dependent methyltransferases-like protein [Arabidopsis thaliana]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 6/111 (5%)

Query: 13  LLRR--RRANNEPYALVPSGSFCTDNGFETTS---NGSSRVSIFDRHLKRKQRDRAAWLT 67
           LL+R   ++  + +  + S SF T+  +         SS+V IFDR LKR  RDRAAWL+
Sbjct: 13  LLKRVPEKSTKQAHTFLASLSFSTEGAYGGDGEFQQNSSKVKIFDRDLKRIHRDRAAWLS 72

Query: 68  R-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           R  NDSFVDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGR  ++K
Sbjct: 73  RQKNDSFVDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEK 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223975545|gb|ACN31960.1| unknown [Zea mays] gi|413916686|gb|AFW56618.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 67/92 (72%)

Query: 26  LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
           L+P   F + +  +   +G  RV IFDR LKR+ RDRAAW+ R  D  VDAVAENLLDRL
Sbjct: 20  LLPKRHFSSSSAPDGLDDGGGRVKIFDRDLKRRHRDRAAWVMRETDGLVDAVAENLLDRL 79

Query: 86  EDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           EDCRK FP+ALCLGGS  AVRRLLRGR  +++
Sbjct: 80  EDCRKAFPSALCLGGSAGAVRRLLRGRGGIER 111

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413916684|gb|AFW56616.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 67/92 (72%)

Query: 26  LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
           L+P   F + +  +   +G  RV IFDR LKR+ RDRAAW+ R  D  VDAVAENLLDRL
Sbjct: 20  LLPKRHFSSSSAPDGLDDGGGRVKIFDRDLKRRHRDRAAWVMRETDGLVDAVAENLLDRL 79

Query: 86  EDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           EDCRK FP+ALCLGGS  AVRRLLRGR  +++
Sbjct: 80  EDCRKAFPSALCLGGSAGAVRRLLRGRGGIER 111

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413916685|gb|AFW56617.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 67/92 (72%)

Query: 26  LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
           L+P   F + +  +   +G  RV IFDR LKR+ RDRAAW+ R  D  VDAVAENLLDRL
Sbjct: 20  LLPKRHFSSSSAPDGLDDGGGRVKIFDRDLKRRHRDRAAWVMRETDGLVDAVAENLLDRL 79

Query: 86  EDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
           EDCRK FP+ALCLGGS  AVRRLLRGR  +++
Sbjct: 80  EDCRKAFPSALCLGGSAGAVRRLLRGRGGIER 111

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2199650	355	AT1G22800 [Arabidopsis thalian	0.658	0.239	0.593	4.9e-21
UNIPROTKB|F1NUD7	305	F1NUD7 "Uncharacterized protei	0.395	0.167	0.471	0.00016
UNIPROTKB|E1C306	346	E1C306 "Uncharacterized protei	0.395	0.147	0.471	0.00019
UNIPROTKB|B3KR61	267	NDUFAF5 "HCG1811060, isoform C	0.496	0.239	0.388	0.0002
UNIPROTKB|Q5RBS1	345	NDUFAF5 "NADH dehydrogenase [u	0.496	0.185	0.388	0.00025
UNIPROTKB|Q5TEU4	345	NDUFAF5 "NADH dehydrogenase [u	0.496	0.185	0.388	0.00032
UNIPROTKB|F1SBJ3	345	NDUFAF5 "Uncharacterized prote	0.496	0.185	0.373	0.00067
MGI|MGI:1916737	343	Ndufaf5 "NADH dehydrogenase (u	0.496	0.186	0.373	0.00086

TAIR|locus:2199650 AT1G22800 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 54/91 (59%), Positives = 65/91 (71%)

Query:    19 ANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSF 73
             +  + +  + S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL+R  NDSF
Sbjct:    21 STKQAHTFLASLSFSTEGAYGGDGEFQQN-SSKVKIFDRDLKRIHRDRAAWLSRQKNDSF 79

Query:    74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEA 104
             VDAVA+NLLDRLEDC+K+FPTA CLGGSL A
Sbjct:    80 VDAVADNLLDRLEDCKKSFPTAFCLGGSLGA 110

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|F1NUD7 F1NUD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query:    49 SIFDRHLKRKQRDRAAWLTRPND-SFV-DAVAENLLDRLEDCRKTFPTALCLG 99
             S FDR LKRKQ++ AA   RP +  ++ D V   + DR+ D  +TFP AL LG
Sbjct:     9 SPFDRRLKRKQKNWAALRPRPAECEYLRDEVGSGVADRVLDIPRTFPLALDLG 61

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1C306 E1C306 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 98 (39.6 bits), Expect = 0.00019, P = 0.00019
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query:    49 SIFDRHLKRKQRDRAAWLTRPND-SFV-DAVAENLLDRLEDCRKTFPTALCLG 99
             S FDR LKRKQ++ AA   RP +  ++ D V   + DR+ D  +TFP AL LG
Sbjct:    46 SPFDRRLKRKQKNWAALRPRPAECEYLRDEVGSGVADRVLDIPRTFPLALDLG 98

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

UNIPROTKB|B3KR61 NDUFAF5 "HCG1811060, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00020, P = 0.00020
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIPRNF 90

Query:    93 PTALCLG 99
             P AL LG
Sbjct:    91 PLALDLG 97

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5RBS1 NDUFAF5 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5" [Pongo abelii (taxid:9601)]

 Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPRGSTSPRTLNIFDRDLKRKQKNWAAQQPEPTKFDYLKEEVGSRIADRVYDIPRNF 90

Query:    93 PTALCLG 99
             P AL LG
Sbjct:    91 PLALDLG 97

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

UNIPROTKB|Q5TEU4 NDUFAF5 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00032, P = 0.00032
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIPRNF 90

Query:    93 PTALCLG 99
             P AL LG
Sbjct:    91 PLALDLG 97

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IDA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1SBJ3 NDUFAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 93 (37.8 bits), Expect = 0.00067, P = 0.00067
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G  +  + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSSRGSTSPRALNIFDRDLKRKQKNWAARQPEPMKFDYLKEEVGSRIADRVYDITRDF 90

Query:    93 PTALCLG 99
             P AL +G
Sbjct:    91 PLALDVG 97

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:1916737 Ndufaf5 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 5" [Mus musculus (taxid:10090)]

 Score = 92 (37.4 bits), Expect = 0.00086, P = 0.00086
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G   + + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVPPSGSTSPRALNIFDRELKRKQKNWAARQPDPMKFDYLKEEVGSRIADRVYDIARDF 90

Query:    93 PTALCLG 99
             P AL +G
Sbjct:    91 PLALDIG 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      129       108   0.00091  102 3  11 22  0.41    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  131 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.19u 0.08s 11.27t   Elapsed:  00:00:01
  Total cpu time:  11.19u 0.08s 11.27t   Elapsed:  00:00:01
  Start:  Fri May 10 09:17:27 2013   End:  Fri May 10 09:17:28 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=ISO

GO:0032259 "methylation" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG2940	325	consensus Predicted methyltransferase [General fun	99.5
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.05
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.31
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	97.38
PLN02233	261	ubiquinone biosynthesis methyltransferase	97.22
PRK05785	226	hypothetical protein; Provisional	97.21
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	96.99
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.88
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	96.8
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	96.72
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.67
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	96.54
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.53
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.1
PLN02585	315	magnesium protoporphyrin IX methyltransferase	96.04
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.87
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	95.86
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	95.77
TIGR00740	239	methyltransferase, putative. A simple BLAST search	95.75
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	95.74
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	95.7
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	95.64
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.58
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	95.54
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	95.5
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	95.46
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	95.43
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	95.39
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.31
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.27
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	95.27
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	95.15
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.1
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	94.99
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	94.95
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	94.89
PLN02244	340	tocopherol O-methyltransferase	94.88
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	94.88
KOG1271	227	consensus Methyltransferases [General function pre	94.86
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	94.85
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	94.82
PRK06202	232	hypothetical protein; Provisional	94.77
PRK11207	197	tellurite resistance protein TehB; Provisional	94.7
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	94.57
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	94.47
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	94.38
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	94.32
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	94.28
TIGR03438	301	probable methyltransferase. This model represents	94.23
TIGR00438	188	rrmJ cell division protein FtsJ.	94.2
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	94.06
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	94.03
TIGR00452	314	methyltransferase, putative. Known examples to dat	93.76
PRK07402	196	precorrin-6B methylase; Provisional	93.76
PRK04148	134	hypothetical protein; Provisional	93.74
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	93.64
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	93.48
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	93.45
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	93.45
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	93.45
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	93.38
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	93.3
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	93.02
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	92.89
PRK12335	287	tellurite resistance protein TehB; Provisional	92.87
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	92.72
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	92.71
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	92.69
PRK08317	241	hypothetical protein; Provisional	92.58
PF13679	141	Methyltransf_32: Methyltransferase domain	92.51
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	92.4
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	92.36
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	92.1
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	92.07
PLN02490	340	MPBQ/MSBQ methyltransferase	91.91
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	91.91
PLN02668	386	indole-3-acetate carboxyl methyltransferase	91.87
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	91.64
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	91.59
PLN02336	475	phosphoethanolamine N-methyltransferase	91.22
PLN02336	475	phosphoethanolamine N-methyltransferase	91.21
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	91.21
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	91.17
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	91.13
PRK04266	226	fibrillarin; Provisional	90.99
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	90.8
PRK14968	188	putative methyltransferase; Provisional	90.76
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	90.76
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	90.58
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	90.47
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	90.19
PRK00811	283	spermidine synthase; Provisional	90.03
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	89.94
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	89.88
COG2890	280	HemK Methylase of polypeptide chain release factor	89.67
PRK14967	223	putative methyltransferase; Provisional	89.65
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	89.54
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	89.22
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	89.16
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	88.95
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	88.89
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	88.86
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	88.72
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	88.57
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	88.22
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	88.2
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	88.06
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	87.98
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	87.67
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	87.54
PLN02366	308	spermidine synthase	87.44
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	87.36
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	87.15
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	87.15
PRK10901	427	16S rRNA methyltransferase B; Provisional	86.56
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	86.37
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	86.15
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	86.14
PRK06922	677	hypothetical protein; Provisional	85.93
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	85.78
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	85.7
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	85.51
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	85.38
PRK04457	262	spermidine synthase; Provisional	85.33
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	85.12
KOG2904	328	consensus Predicted methyltransferase [General fun	85.04
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	84.87
PRK01581	374	speE spermidine synthase; Validated	84.77
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	84.72
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	84.51
PRK13255	218	thiopurine S-methyltransferase; Reviewed	84.29
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	84.22
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	83.68
PRK03612	521	spermidine synthase; Provisional	83.08
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	82.05
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	81.84
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	81.73
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	81.4
PRK14902	444	16S rRNA methyltransferase B; Provisional	81.04
PHA03412	241	putative methyltransferase; Provisional	80.92
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	80.77
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	80.74
PTZ00146	293	fibrillarin; Provisional	80.14

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.50  E-value=1.2e-14  Score=119.83  Aligned_cols=85  Identities=51%  Similarity=0.801  Sum_probs=73.2

Q ss_pred             eecccccccccCCCccCCCCCCccCcCCHHHHHHHHhHhhhcCCC-ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCcc
Q 032981           25 ALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLE  103 (129)
Q Consensus        25 ~~~~~r~~~~~~~~~~~~~~~~~~~IFDR~~vr~~r~RAA~~y~~-~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG  103 (129)
                      +++.+-+|+|.          +...||||+.++.||+||+...+. .+||++||+++|+||+.++++.|+.++||||+-|
T Consensus        15 ~~l~sls~~t~----------s~~~iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G   84 (325)
T KOG2940|consen   15 TFLASLSFSTE----------SKVKIFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLG   84 (325)
T ss_pred             HHHHHhhccch----------hhhHhhhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhhCcceeecccchh
Confidence            44555566554          446799999999999999987554 5999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCcchhHH
Q 032981          104 AVRRLLRGRVVLQKENF  120 (129)
Q Consensus       104 ~l~~~L~~~g~v~~l~~  120 (129)
                      ++.+.|.+.+ |+++|+
T Consensus        85 ~v~rhl~~e~-vekli~  100 (325)
T KOG2940|consen   85 AVKRHLRGEG-VEKLIM  100 (325)
T ss_pred             hhhHHHHhcc-hhheee
Confidence            9999999864 888764

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.05  E-value=3.2e-10  Score=89.03  Aligned_cols=62  Identities=21%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             CcCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           49 SIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        49 ~IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...|+++|+++|+||+.+|++++.+|+++++.|.++|..  ..+.+|||+|||+|.++..|.+.
T Consensus         2 ~~~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~   63 (251)
T PRK10258          2 ATVNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRER   63 (251)
T ss_pred             CccCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHc
Confidence            458999999999999999999999999999999999875  35889999999999999888654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.31  E-value=7.3e-07  Score=67.61  Aligned_cols=54  Identities=20%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             HhHhhhcCCCChHHHHHHHHHHHhhhHhhh-ccCCeEEEEccCccHHHHHHhccC
Q 032981           60 RDRAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        60 r~RAA~~y~~~~fLq~eVAerL~DRL~~Ik-R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      |+||+..|++++.+|++++..|.+.+.... ..+.+|||+|||+|.++..|.+.+
T Consensus         2 ~~~~~~~y~~~~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~   56 (240)
T TIGR02072         2 FNKAAKTYDRHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF   56 (240)
T ss_pred             cchhhhchhHHHHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC
Confidence            678888899999999999999999998754 345789999999999988886544

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=97.38  E-value=0.00021  Score=55.14  Aligned_cols=58  Identities=12%  Similarity=-0.072  Sum_probs=38.5

Q ss_pred             HHHHHHHHhHhhhcCCCChH---HHHHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981           53 RHLKRKQRDRAAWLTRPNDS---FVDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        53 R~~vr~~r~RAA~~y~~~~f---Lq~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +..++..|++++..||..+-   ++.....+ .+.+..+.. ...+|||+|||+|.++..+.+
T Consensus         4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~   65 (231)
T TIGR02752         4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWR-KDTMKRMNVQAGTSALDVCCGTADWSIALAE   65 (231)
T ss_pred             HHHHHHHHHHhhhHHhHHHHHhcCCchHHHH-HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHH
Confidence            67889999999998887432   22333222 223333332 356999999999999887753

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=97.22  E-value=0.00074  Score=54.36  Aligned_cols=65  Identities=12%  Similarity=0.016  Sum_probs=43.3

Q ss_pred             CccCcCCH-HHHHHHHhHhhhcCCCC-hHH---HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           46 SRVSIFDR-HLKRKQRDRAAWLTRPN-DSF---VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        46 ~~~~IFDR-~~vr~~r~RAA~~y~~~-~fL---q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ....+.|= +.++..|+++|..||.. +++   +++...++..++..++ ...++||+|||||.++..|.+
T Consensus        24 ~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~-~~~~VLDlGcGtG~~~~~la~   93 (261)
T PLN02233         24 RRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAK-MGDRVLDLCCGSGDLAFLLSE   93 (261)
T ss_pred             hcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCC-CCCEEEEECCcCCHHHHHHHH
Confidence            33445554 45888999999988863 333   3444454443333433 467999999999998887754

>PRK05785 hypothetical protein; Provisional

Probab=97.21  E-value=0.00068  Score=53.60  Aligned_cols=62  Identities=3%  Similarity=-0.094  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHhHhhhcCCCChH-H----HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           51 FDRHLKRKQRDRAAWLTRPNDS-F----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        51 FDR~~vr~~r~RAA~~y~~~~f-L----q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.++..|++.|..||...- +    ...--..+.+.+........+|||||||||.++..|.+.
T Consensus         6 ~~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~   72 (226)
T PRK05785          6 ATWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKV   72 (226)
T ss_pred             ccHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHh
Confidence            4566778888888877765321 1    011112233333222223679999999999999888665

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=96.99  E-value=0.0032  Score=50.52  Aligned_cols=58  Identities=19%  Similarity=0.153  Sum_probs=39.4

Q ss_pred             CcCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           49 SIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        49 ~IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +-.++..+..++ +-. ....++.+++.+++.|.+.+.   ....+|||+|||+|.++..|.+
T Consensus        48 ~~d~~~~~~ar~-~fl-~~g~y~~l~~~i~~~l~~~l~---~~~~~vLDiGcG~G~~~~~l~~  105 (272)
T PRK11088         48 PGDNKEMMQARR-AFL-DAGHYQPLRDAVANLLAERLD---EKATALLDIGCGEGYYTHALAD  105 (272)
T ss_pred             CCcCHHHHHHHH-HHH-HCCChHHHHHHHHHHHHHhcC---CCCCeEEEECCcCCHHHHHHHH
Confidence            346666665543 211 123366788888888876553   3567899999999999887753

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.88  E-value=0.0038  Score=49.47  Aligned_cols=56  Identities=13%  Similarity=-0.056  Sum_probs=34.0

Q ss_pred             HHHHHhHhhhcCCC--ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           56 KRKQRDRAAWLTRP--NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        56 vr~~r~RAA~~y~~--~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ++.+|++..  |..  ..--+.-+-.++.+-|..+.....+|||+|||+|.++..|.+.+
T Consensus         9 ~a~~f~~~~--y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g   66 (255)
T PRK11036          9 IAEKFSRNI--YGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELG   66 (255)
T ss_pred             HHHHHHHhc--cCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcC
Confidence            556666644  332  12222223334444445554567899999999999998886654

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=96.80  E-value=0.0016  Score=46.38  Aligned_cols=33  Identities=30%  Similarity=0.220  Sum_probs=24.8

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +..++........+|||+|||+|.++..|.+.+
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~   44 (161)
T PF13489_consen   12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG   44 (161)
T ss_dssp             HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT
T ss_pred             HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC
Confidence            344555434568899999999999999996653

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=96.72  E-value=0.00074  Score=53.46  Aligned_cols=44  Identities=18%  Similarity=0.112  Sum_probs=32.2

Q ss_pred             CCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        67 y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      |...+..+.....+|.+++..  ....+|||||||+|.++..|...
T Consensus         7 y~~~~~~~~~~~~~ll~~l~~--~~~~~vLDlGcG~G~~~~~l~~~   50 (255)
T PRK14103          7 YLAFADHRGRPFYDLLARVGA--ERARRVVDLGCGPGNLTRYLARR   50 (255)
T ss_pred             HHHHHhHhhCHHHHHHHhCCC--CCCCEEEEEcCCCCHHHHHHHHH
Confidence            444455555667778777654  34689999999999999888654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.67  E-value=0.00085  Score=52.78  Aligned_cols=44  Identities=20%  Similarity=0.080  Sum_probs=32.0

Q ss_pred             CCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        67 y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      |+.....+...++++.+.+..  ....+|||||||+|.++..|.+.
T Consensus         9 Y~~~~~~~~~~~~~ll~~~~~--~~~~~vLDiGcG~G~~~~~la~~   52 (258)
T PRK01683          9 YLKFEDERTRPARDLLARVPL--ENPRYVVDLGCGPGNSTELLVER   52 (258)
T ss_pred             HHHHHHHhhcHHHHHHhhCCC--cCCCEEEEEcccCCHHHHHHHHH
Confidence            444445666678888877743  24679999999999998887543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=96.54  E-value=0.0056  Score=46.50  Aligned_cols=61  Identities=15%  Similarity=-0.065  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHhHhhhcCCCC-hHH----HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           51 FDRHLKRKQRDRAAWLTRPN-DSF----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        51 FDR~~vr~~r~RAA~~y~~~-~fL----q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      =+++.++..++.++..|+.. .++    +......+.+.+.. . ...++||+|||+|.++..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~vldiG~G~G~~~~~l~~~~   73 (239)
T PRK00216          8 EKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGV-R-PGDKVLDLACGTGDLAIALAKAV   73 (239)
T ss_pred             cchHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCC-C-CCCeEEEeCCCCCHHHHHHHHHc
Confidence            36888889999988877642 222    33444455554432 2 45799999999999988775443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.53  E-value=0.002  Score=52.12  Aligned_cols=50  Identities=20%  Similarity=0.164  Sum_probs=34.7

Q ss_pred             HhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           62 RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        62 RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ++...+.+.-.....+++.+.+.+..  .....|||+|||+|.++..|.+.+
T Consensus        15 ~~~k~~gq~fl~~~~i~~~i~~~l~~--~~~~~VLEiG~G~G~lt~~L~~~~   64 (272)
T PRK00274         15 RAKKSLGQNFLIDENILDKIVDAAGP--QPGDNVLEIGPGLGALTEPLLERA   64 (272)
T ss_pred             CCCcccCcCcCCCHHHHHHHHHhcCC--CCcCeEEEeCCCccHHHHHHHHhC
Confidence            44444555433455678888876643  245789999999999999886654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.10  E-value=0.023  Score=43.37  Aligned_cols=36  Identities=19%  Similarity=0.106  Sum_probs=23.5

Q ss_pred             HHHHHHhhhHhh-hccCCeEEEEccCccHHHHHHhcc
Q 032981           77 VAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        77 VAerL~DRL~~I-kR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+.+.+.+... .....+|||+|||+|.++..|.+.
T Consensus        48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~   84 (230)
T PRK07580         48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR   84 (230)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc
Confidence            344444444331 123568999999999998888543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=96.04  E-value=0.014  Score=48.95  Aligned_cols=63  Identities=14%  Similarity=-0.002  Sum_probs=37.2

Q ss_pred             CCHHHHHHHHhHhh-----hcCCCChHH----------HHHHHHHHHhhhHhh-hccCCeEEEEccCccHHHHHHhccC
Q 032981           51 FDRHLKRKQRDRAA-----WLTRPNDSF----------VDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        51 FDR~~vr~~r~RAA-----~~y~~~~fL----------q~eVAerL~DRL~~I-kR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      =|+..|+..|++.+     ..|+..+.+          ++++.+.+.+-+... .....++||||||+|.++..|.+.+
T Consensus        88 ~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g  166 (315)
T PLN02585         88 DDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG  166 (315)
T ss_pred             HHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC
Confidence            36677778888753     224432211          123344444444322 1235699999999999998886654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=95.87  E-value=0.0072  Score=48.39  Aligned_cols=59  Identities=20%  Similarity=0.032  Sum_probs=19.0

Q ss_pred             CHHHHHHHHhHhhhcCCCCh----HH-HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           52 DRHLKRKQRDRAAWLTRPND----SF-VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        52 DR~~vr~~r~RAA~~y~~~~----fL-q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.|++-|++.|..||...    +- ++..-+.+.+.+.  .+...+|||+|||||.++..|.+.
T Consensus         5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~   68 (233)
T PF01209_consen    5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG--LRPGDRVLDVACGTGDVTRELARR   68 (233)
T ss_dssp             --------------------------------SHHHHHHT----S--EEEEET-TTSHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC--CCCCCEEEEeCCChHHHHHHHHHH
Confidence            44567778888888777632    21 2222233333321  245779999999999999988653

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=95.86  E-value=0.015  Score=44.81  Aligned_cols=23  Identities=17%  Similarity=-0.061  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...++||+|||+|.++..+.+.+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~   77 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRG   77 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCC
Confidence            46789999999999998886543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=95.77  E-value=0.03  Score=44.40  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=32.9

Q ss_pred             cCCHHHHHHHHhHhhh-cCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           50 IFDRHLKRKQRDRAAW-LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        50 IFDR~~vr~~r~RAA~-~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      -||..... .++.... .-..++.+++.++.- ..+.   .....+|||||||+|..+..|.
T Consensus        19 ~f~~~~a~-~yd~~~~~~~p~y~~~~~~~~~~-~~~~---~~~~~~vLDlGcGtG~~~~~l~   75 (247)
T PRK15451         19 TFDERVAE-VFPDMIQRSVPGYSNIISMIGML-AERF---VQPGTQVYDLGCSLGAATLSVR   75 (247)
T ss_pred             ccChHHHH-hhhhHHHhcCCChHHHHHHHHHH-HHHh---CCCCCEEEEEcccCCHHHHHHH
Confidence            57764333 4543332 233456666665543 3222   2245789999999999876664

>TIGR00740 methyltransferase, putative

Probab=95.75  E-value=0.029  Score=43.89  Aligned_cols=21  Identities=24%  Similarity=0.029  Sum_probs=17.1

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||||||+|..+..+.+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~   73 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARR   73 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHH
Confidence            456899999999998876643

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=95.74  E-value=0.015  Score=47.40  Aligned_cols=62  Identities=15%  Similarity=-0.022  Sum_probs=41.7

Q ss_pred             cCCHHHHHHHHhHhhhcCCCCh-----HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           50 IFDRHLKRKQRDRAAWLTRPND-----SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        50 IFDR~~vr~~r~RAA~~y~~~~-----fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ......|..-|++.|..||..+     =+++.-=+.+.+++.. + ...++||+|||||-++-.+.+..
T Consensus         7 ~~k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~-~-~g~~vLDva~GTGd~a~~~~k~~   73 (238)
T COG2226           7 DEKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGI-K-PGDKVLDVACGTGDMALLLAKSV   73 (238)
T ss_pred             cccHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCC-C-CCCEEEEecCCccHHHHHHHHhc
Confidence            3456778888888887776543     2333333344443322 2 68899999999999999887653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=95.70  E-value=0.02  Score=43.02  Aligned_cols=53  Identities=9%  Similarity=-0.106  Sum_probs=32.9

Q ss_pred             HHHhHhhhcCCCChHHH-----HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           58 KQRDRAAWLTRPNDSFV-----DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        58 ~~r~RAA~~y~~~~fLq-----~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+|+..+.+|+..+-..     ....+.+.+.+..  ....+|||+|||+|.++..+.+.
T Consensus         3 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vldiG~G~G~~~~~~~~~   60 (223)
T TIGR01934         3 EMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGV--FKGQKVLDVACGTGDLAIELAKS   60 (223)
T ss_pred             hHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhcc--CCCCeEEEeCCCCChhHHHHHHh
Confidence            46777777777754332     2222333333222  14679999999999998877543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=95.64  E-value=0.01  Score=47.23  Aligned_cols=39  Identities=18%  Similarity=0.171  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      -..+++.+.+-+..  ...+.|||+|||+|.++..|.+.+.
T Consensus        14 d~~i~~~i~~~~~~--~~~~~VLEiG~G~G~lt~~L~~~~~   52 (253)
T TIGR00755        14 DESVIQKIVEAANV--LEGDVVLEIGPGLGALTEPLLKRAK   52 (253)
T ss_pred             CHHHHHHHHHhcCC--CCcCEEEEeCCCCCHHHHHHHHhCC
Confidence            34666777765543  2467999999999999999976543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.58  E-value=0.014  Score=44.78  Aligned_cols=34  Identities=12%  Similarity=-0.038  Sum_probs=24.1

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.+.+.+...  .+.+|||+|||+|..+..|.+.+
T Consensus        19 ~~~l~~~~~~~--~~~~vLDiGcG~G~~a~~la~~g   52 (195)
T TIGR00477        19 HSAVREAVKTV--APCKTLDLGCGQGRNSLYLSLAG   52 (195)
T ss_pred             hHHHHHHhccC--CCCcEEEeCCCCCHHHHHHHHCC
Confidence            33444444332  46799999999999999887654

Part of a tellurite-reducing operon tehA and tehB

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=95.54  E-value=0.024  Score=44.30  Aligned_cols=35  Identities=14%  Similarity=0.104  Sum_probs=23.9

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+..-|..+. ...+|||+|||+|..+..|...
T Consensus        30 ~~~~~~~~l~~~~-~~~~VLDiGCG~G~~~~~L~~~   64 (204)
T TIGR03587        30 KLAMFARALNRLP-KIASILELGANIGMNLAALKRL   64 (204)
T ss_pred             HHHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHh
Confidence            3444444444433 4678999999999999888654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=95.50  E-value=0.015  Score=46.45  Aligned_cols=22  Identities=18%  Similarity=0.099  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .-.+|||||||+|.+...|.+.
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~   34 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDE   34 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHh
Confidence            4679999999999999999764

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=95.46  E-value=0.012  Score=39.85  Aligned_cols=20  Identities=20%  Similarity=0.012  Sum_probs=16.9

Q ss_pred             CCeEEEEccCccHHHHHHhc
Q 032981           92 FPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+|||||||+|.++..|.+
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~   21 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALAR   21 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHH
T ss_pred             CCEEEEEcCcCCHHHHHHHh
Confidence            35799999999999888755

...

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=95.43  E-value=0.015  Score=45.50  Aligned_cols=32  Identities=9%  Similarity=-0.028  Sum_probs=22.6

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ++.++...++ ....|||||||||.++..+.+.
T Consensus        41 ~~~~~~~~~~-~~~~VLDlG~GtG~~t~~l~~~   72 (209)
T PRK11188         41 EIQQSDKLFK-PGMTVVDLGAAPGGWSQYAVTQ   72 (209)
T ss_pred             HHHHHhccCC-CCCEEEEEcccCCHHHHHHHHH
Confidence            3444444444 3578999999999999877543

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=95.39  E-value=0.0097  Score=49.34  Aligned_cols=51  Identities=18%  Similarity=-0.039  Sum_probs=38.9

Q ss_pred             hhcCCCC---hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981           64 AWLTRPN---DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        64 A~~y~~~---~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      |..|.+.   -.+|.+++++-+|-|+.-.-...-|||||||+|.....|...|.
T Consensus        20 A~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh   73 (270)
T KOG1541|consen   20 APKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH   73 (270)
T ss_pred             hhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc
Confidence            3445553   48899999999988866443467899999999999988876653

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=95.31  E-value=0.016  Score=46.50  Aligned_cols=39  Identities=23%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +-..+++.+.+.+...  ....|||+|||+|.++..|.+.+
T Consensus        13 ~d~~~~~~iv~~~~~~--~~~~VLEIG~G~G~lt~~L~~~~   51 (258)
T PRK14896         13 IDDRVVDRIVEYAEDT--DGDPVLEIGPGKGALTDELAKRA   51 (258)
T ss_pred             CCHHHHHHHHHhcCCC--CcCeEEEEeCccCHHHHHHHHhC
Confidence            3556777777766432  45789999999999999986653

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.27  E-value=0.017  Score=43.56  Aligned_cols=41  Identities=15%  Similarity=-0.006  Sum_probs=30.8

Q ss_pred             CChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        69 ~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .....++++.+-+.+.|.. . ...++||+|||+|.++-.+..
T Consensus        11 ~~~~~~~~~r~~~~~~l~~-~-~~~~vLDiG~G~G~~~~~la~   51 (187)
T PRK08287         11 KVPMTKEEVRALALSKLEL-H-RAKHLIDVGAGTGSVSIEAAL   51 (187)
T ss_pred             CCCCchHHHHHHHHHhcCC-C-CCCEEEEECCcCCHHHHHHHH
Confidence            4557777888777777643 2 467999999999999877754

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=95.27  E-value=0.042  Score=41.23  Aligned_cols=33  Identities=27%  Similarity=0.208  Sum_probs=23.7

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+-|.+.+...  ...++||+|||+|.++-.+.+.
T Consensus        20 t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~   52 (170)
T PF05175_consen   20 TRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKR   52 (170)
T ss_dssp             HHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHT
T ss_pred             HHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHh
Confidence            33444444443  5778999999999998888654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=95.15  E-value=0.14  Score=43.13  Aligned_cols=22  Identities=9%  Similarity=-0.173  Sum_probs=18.1

Q ss_pred             CCeEEEEccCccHHHHHHhccC
Q 032981           92 FPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+|||||||+|.++..|.+.+
T Consensus       132 g~~ILDIGCG~G~~s~~La~~g  153 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARMG  153 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHcC
Confidence            3489999999999998886543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.10  E-value=0.014  Score=48.64  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=22.9

Q ss_pred             HHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981           80 NLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        80 rL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      -|.+++..... .|.++||||||||.....|+.
T Consensus       113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~  145 (287)
T COG4976         113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRD  145 (287)
T ss_pred             HHHHHHHhccCCccceeeecccCcCcccHhHHH
Confidence            34444444443 399999999999998888753

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=94.99  E-value=0.017  Score=47.78  Aligned_cols=33  Identities=27%  Similarity=0.216  Sum_probs=26.5

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      |.+|..++...  .+..|.|||||+|..++.|.++
T Consensus        19 a~dLla~Vp~~--~~~~v~DLGCGpGnsTelL~~R   51 (257)
T COG4106          19 ARDLLARVPLE--RPRRVVDLGCGPGNSTELLARR   51 (257)
T ss_pred             HHHHHhhCCcc--ccceeeecCCCCCHHHHHHHHh
Confidence            66777777653  4778999999999999999655

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=94.95  E-value=0.024  Score=42.22  Aligned_cols=33  Identities=18%  Similarity=0.156  Sum_probs=23.7

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ++.+.+.+..  .....+||+|||+|.++..+..+
T Consensus         2 ~~~i~~~~~~--~~~~~vLEiG~G~G~lt~~l~~~   34 (169)
T smart00650        2 IDKIVRAANL--RPGDTVLEIGPGKGALTEELLER   34 (169)
T ss_pred             HHHHHHhcCC--CCcCEEEEECCCccHHHHHHHhc
Confidence            4555555532  23468999999999999988665

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=94.89  E-value=0.02  Score=42.87  Aligned_cols=34  Identities=21%  Similarity=0.138  Sum_probs=24.5

Q ss_pred             HHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        79 erL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      .-|.+.+...  .+.++||+|||+|.++..+...+.
T Consensus         9 ~~l~~~l~~~--~~~~vLdlG~G~G~~~~~l~~~~~   42 (179)
T TIGR00537         9 LLLEANLREL--KPDDVLEIGAGTGLVAIRLKGKGK   42 (179)
T ss_pred             HHHHHHHHhc--CCCeEEEeCCChhHHHHHHHhcCC
Confidence            3344444443  457899999999999998876654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02244 tocopherol O-methyltransferase

Probab=94.88  E-value=0.031  Score=46.68  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=18.9

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....+|||||||+|.++..|.+.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~  139 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARK  139 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh
Confidence            35678999999999998888653

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=94.88  E-value=0.027  Score=38.33  Aligned_cols=36  Identities=14%  Similarity=0.038  Sum_probs=25.5

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ++++...+.+.+. +. ...++||+|||+|.++..+..
T Consensus         4 ~~~~~~~~~~~~~-~~-~~~~vldlG~G~G~~~~~l~~   39 (124)
T TIGR02469         4 KREVRALTLSKLR-LR-PGDVLWDIGAGSGSITIEAAR   39 (124)
T ss_pred             hHHHHHHHHHHcC-CC-CCCEEEEeCCCCCHHHHHHHH
Confidence            4456666666653 22 246899999999999887754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=94.86  E-value=0.027  Score=45.66  Aligned_cols=26  Identities=19%  Similarity=0.005  Sum_probs=21.0

Q ss_pred             hhccCCeEEEEccCccHHHHHHhccC
Q 032981           88 CRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        88 IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      |..+.++|||||||.|++...|.+.|
T Consensus        64 v~~~A~~VlDLGtGNG~~L~~L~~eg   89 (227)
T KOG1271|consen   64 VSKQADRVLDLGTGNGHLLFQLAKEG   89 (227)
T ss_pred             hcccccceeeccCCchHHHHHHHHhc
Confidence            34456799999999999999987644

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=94.85  E-value=0.037  Score=42.05  Aligned_cols=22  Identities=27%  Similarity=0.190  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..|...
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~   34 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE   34 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc
Confidence            4568999999999999888543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=94.82  E-value=0.032  Score=44.40  Aligned_cols=33  Identities=18%  Similarity=-0.027  Sum_probs=22.8

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +++.|........++||+|||+|.++-.+.+.+
T Consensus       109 ~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g  141 (250)
T PRK00517        109 CLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG  141 (250)
T ss_pred             HHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC
Confidence            333333333467899999999999887776543

>PRK06202 hypothetical protein; Provisional

Probab=94.77  E-value=0.081  Score=41.16  Aligned_cols=21  Identities=19%  Similarity=-0.048  Sum_probs=17.5

Q ss_pred             ccCCeEEEEccCccHHHHHHh
Q 032981           90 KTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ....+|||||||+|.++..|.
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~   79 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLA   79 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHH
Confidence            456799999999999877764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=94.70  E-value=0.031  Score=42.95  Aligned_cols=32  Identities=16%  Similarity=0.065  Sum_probs=23.2

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.+.+...  ...+|||+|||+|..+..|.+.+
T Consensus        21 ~l~~~l~~~--~~~~vLDiGcG~G~~a~~La~~g   52 (197)
T PRK11207         21 EVLEAVKVV--KPGKTLDLGCGNGRNSLYLAANG   52 (197)
T ss_pred             HHHHhcccC--CCCcEEEECCCCCHHHHHHHHCC
Confidence            344444432  46799999999999998887654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=94.57  E-value=0.036  Score=45.49  Aligned_cols=39  Identities=13%  Similarity=0.089  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      --|.+..+.+.|++. ++ .-.+|||||||.|.++..+.++
T Consensus        45 ~AQ~~k~~~~~~~~~-l~-~G~~vLDiGcGwG~~~~~~a~~   83 (273)
T PF02353_consen   45 EAQERKLDLLCEKLG-LK-PGDRVLDIGCGWGGLAIYAAER   83 (273)
T ss_dssp             HHHHHHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CC-CCCEEEEeCCCccHHHHHHHHH
Confidence            345555666777763 33 5779999999999999888665

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=94.47  E-value=0.038  Score=46.14  Aligned_cols=23  Identities=17%  Similarity=-0.084  Sum_probs=18.6

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..+...+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g  144 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAG  144 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcC
Confidence            35799999999999988775543

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.38  E-value=0.044  Score=42.40  Aligned_cols=34  Identities=9%  Similarity=0.007  Sum_probs=22.9

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+...|.+.|..  ....++||+|||+|+.+..|.+
T Consensus        59 ~~~~~~~~~l~~--~~~~~VLDiG~GsG~~~~~la~   92 (205)
T PRK13944         59 HMVAMMCELIEP--RPGMKILEVGTGSGYQAAVCAE   92 (205)
T ss_pred             HHHHHHHHhcCC--CCCCEEEEECcCccHHHHHHHH
Confidence            344455554432  2457999999999998877643

>TIGR00478 tly hemolysin TlyA family protein

Probab=94.32  E-value=0.067  Score=43.12  Aligned_cols=23  Identities=13%  Similarity=-0.009  Sum_probs=19.0

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .-..+||+|||||.++..|.+.|
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~g   97 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKG   97 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcC
Confidence            34489999999999999987653

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=94.28  E-value=0.061  Score=41.64  Aligned_cols=35  Identities=17%  Similarity=0.065  Sum_probs=24.8

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+...|.+.+. + ....++||||||+|+.+..|.+.
T Consensus        64 ~~~~~~~~~l~-~-~~~~~VLDiG~GsG~~a~~la~~   98 (215)
T TIGR00080        64 HMVAMMTELLE-L-KPGMKVLEIGTGSGYQAAVLAEI   98 (215)
T ss_pred             HHHHHHHHHhC-C-CCcCEEEEECCCccHHHHHHHHH
Confidence            34455655554 2 35679999999999999887543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03438 probable methyltransferase

Probab=94.23  E-value=0.062  Score=44.09  Aligned_cols=37  Identities=16%  Similarity=0.141  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      -+.+..+++|.+.+.    ....+||+|||||..+..|.+.
T Consensus        48 ~il~~~~~~ia~~~~----~~~~iLELGcGtG~~t~~Ll~~   84 (301)
T TIGR03438        48 AILERHADEIAAATG----AGCELVELGSGSSRKTRLLLDA   84 (301)
T ss_pred             HHHHHHHHHHHHhhC----CCCeEEecCCCcchhHHHHHHh
Confidence            455566666666553    3568999999999988777543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00438 rrmJ cell division protein FtsJ

Probab=94.20  E-value=0.045  Score=41.35  Aligned_cols=30  Identities=17%  Similarity=0.103  Sum_probs=22.5

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +.+++..++ ...+|||+|||+|.++..+..
T Consensus        23 ~~~~~~~i~-~g~~VLDiG~GtG~~~~~l~~   52 (188)
T TIGR00438        23 LNQKFKLIK-PGDTVLDLGAAPGGWSQVAVE   52 (188)
T ss_pred             HHHHhcccC-CCCEEEEecCCCCHHHHHHHH
Confidence            555565654 467899999999998887643

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=94.06  E-value=0.061  Score=41.26  Aligned_cols=37  Identities=14%  Similarity=0.055  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      +++.+.+-+.+. -+..+  ...++||+|||+|.++-.+.
T Consensus        25 ~~~~~~~~d~i~-~~~~~--~~~~vLDiGcGtG~~s~~la   61 (181)
T TIGR00138        25 EIWERHILDSLK-LLEYL--DGKKVIDIGSGAGFPGIPLA   61 (181)
T ss_pred             HHHHHHHHHHHH-HHHhc--CCCeEEEecCCCCccHHHHH
Confidence            445555545443 22233  26799999999998777664

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=94.03  E-value=0.051  Score=40.66  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=23.8

Q ss_pred             HHHhhhHhhhc-cCCeEEEEccCccHHHHHHhccC
Q 032981           80 NLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        80 rL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ++.++...++. ....+|||||++|.|++.+..++
T Consensus        11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~   45 (181)
T PF01728_consen   11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG   45 (181)
T ss_dssp             HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST
T ss_pred             HHHHHCCCCCcccccEEEEcCCcccceeeeeeecc
Confidence            34555554444 45799999999999999997765

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR00452 methyltransferase, putative

Probab=93.76  E-value=0.061  Score=45.19  Aligned_cols=22  Identities=18%  Similarity=-0.071  Sum_probs=17.5

Q ss_pred             CCeEEEEccCccHHHHHHhccC
Q 032981           92 FPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+|||+|||+|.+...+...+
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g  143 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHG  143 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcC
Confidence            5689999999999877765443

Known examples to date are restricted to the proteobacteria.

>PRK07402 precorrin-6B methylase; Provisional

Probab=93.76  E-value=0.072  Score=40.50  Aligned_cols=38  Identities=11%  Similarity=-0.024  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ...++++..-+.+.+. +. ...++||+|||+|.++..+.
T Consensus        22 p~t~~~v~~~l~~~l~-~~-~~~~VLDiG~G~G~~~~~la   59 (196)
T PRK07402         22 PLTKREVRLLLISQLR-LE-PDSVLWDIGAGTGTIPVEAG   59 (196)
T ss_pred             CCCHHHHHHHHHHhcC-CC-CCCEEEEeCCCCCHHHHHHH
Confidence            4667777777777663 32 45789999999999877764

>PRK04148 hypothetical protein; Provisional

Probab=93.74  E-value=0.085  Score=39.70  Aligned_cols=37  Identities=22%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccH-HHHHHhccC
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEA-VRRLLRGRV  113 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~-l~~~L~~~g  113 (129)
                      +.+++-|.+.+...  ...++||+|||+|. ++..|.+.|
T Consensus         2 ~~i~~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G   39 (134)
T PRK04148          2 DTIAEFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESG   39 (134)
T ss_pred             hHHHHHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCC
Confidence            45777777777553  24689999999996 888887654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=93.64  E-value=0.049  Score=44.92  Aligned_cols=23  Identities=13%  Similarity=-0.132  Sum_probs=19.4

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .-.+|||+|||-|.++..+...|
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G   81 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG   81 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC
Confidence            45589999999999999987654

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=93.48  E-value=0.053  Score=36.72  Aligned_cols=18  Identities=39%  Similarity=0.374  Sum_probs=13.6

Q ss_pred             EEEEccCccHHHHHHhcc
Q 032981           95 ALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        95 aLDLGcgtG~l~~~L~~~  112 (129)
                      |||+|||+|..+..+...
T Consensus         1 ILDlgcG~G~~~~~l~~~   18 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARR   18 (101)
T ss_dssp             -EEET-TTSHHHHHHHHH
T ss_pred             CEEeecCCcHHHHHHHHH
Confidence            799999999998888644

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.45  E-value=0.099  Score=40.77  Aligned_cols=35  Identities=9%  Similarity=0.003  Sum_probs=24.4

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      -.+...|.+.+. ++ ...+|||+|||+|+.+..|..
T Consensus        62 p~~~~~~~~~l~-~~-~g~~VLdIG~GsG~~t~~la~   96 (212)
T PRK13942         62 IHMVAIMCELLD-LK-EGMKVLEIGTGSGYHAAVVAE   96 (212)
T ss_pred             HHHHHHHHHHcC-CC-CcCEEEEECCcccHHHHHHHH
Confidence            344455555553 22 467999999999999987753

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.45  E-value=0.027  Score=36.27  Aligned_cols=17  Identities=24%  Similarity=0.210  Sum_probs=14.6

Q ss_pred             EEEccCccHHHHHHhcc
Q 032981           96 LCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        96 LDLGcgtG~l~~~L~~~  112 (129)
                      ||+|||+|..+..|.+.
T Consensus         1 LdiG~G~G~~~~~l~~~   17 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR   17 (95)
T ss_dssp             EEET-TTSHHHHHHHHT
T ss_pred             CEecCcCCHHHHHHHhc
Confidence            89999999999999776

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=93.45  E-value=0.059  Score=41.64  Aligned_cols=21  Identities=14%  Similarity=0.015  Sum_probs=18.0

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +...|||+|||+|..+..|.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~   60 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAK   60 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHH
Confidence            567899999999999888754

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=93.38  E-value=0.072  Score=44.24  Aligned_cols=41  Identities=15%  Similarity=0.129  Sum_probs=29.5

Q ss_pred             hHH-HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           71 DSF-VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        71 ~fL-q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .|| ...+.+.+.+.+..  ...+.|||||||+|.++..|.+.+
T Consensus        17 nFL~d~~i~~~Iv~~~~~--~~~~~VLEIG~G~G~LT~~Ll~~~   58 (294)
T PTZ00338         17 HILKNPLVLDKIVEKAAI--KPTDTVLEIGPGTGNLTEKLLQLA   58 (294)
T ss_pred             cccCCHHHHHHHHHhcCC--CCcCEEEEecCchHHHHHHHHHhC
Confidence            454 45677777765532  246789999999999998886543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=93.30  E-value=0.095  Score=42.77  Aligned_cols=23  Identities=4%  Similarity=-0.195  Sum_probs=18.5

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||+|||+|.++..+.+.|
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g  181 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLG  181 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcC
Confidence            45799999999999887775543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=93.02  E-value=0.17  Score=41.66  Aligned_cols=38  Identities=16%  Similarity=-0.087  Sum_probs=25.6

Q ss_pred             HHHHHHHhhhHhhh--ccCCeEEEEccCccHHHHHHhccC
Q 032981           76 AVAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        76 eVAerL~DRL~~Ik--R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+++.|.+.+....  ....+|||+|||+|.++-.|...+
T Consensus       156 ~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~  195 (315)
T PRK03522        156 AVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG  195 (315)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC
Confidence            45555555443322  135799999999999988886543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=92.89  E-value=0.15  Score=39.54  Aligned_cols=19  Identities=16%  Similarity=-0.071  Sum_probs=16.2

Q ss_pred             CCeEEEEccCccHHHHHHh
Q 032981           92 FPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~  110 (129)
                      ..++||+|||+|..+-.+.
T Consensus        46 g~~VLDiGcGtG~~al~la   64 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLA   64 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHH
Confidence            6789999999998877664

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=92.87  E-value=0.086  Score=42.78  Aligned_cols=23  Identities=22%  Similarity=-0.100  Sum_probs=18.8

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.+|||+|||+|..+..|.+.|
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g  142 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG  142 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC
Confidence            35699999999999988886543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=92.72  E-value=0.11  Score=43.52  Aligned_cols=36  Identities=17%  Similarity=0.081  Sum_probs=24.9

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCCc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVL  115 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~v  115 (129)
                      -+.+++.|..  ....++||||||.|.+.....+..++
T Consensus        61 ~~~~~~kl~L--~~G~~lLDiGCGWG~l~~~aA~~y~v   96 (283)
T COG2230          61 LDLILEKLGL--KPGMTLLDIGCGWGGLAIYAAEEYGV   96 (283)
T ss_pred             HHHHHHhcCC--CCCCEEEEeCCChhHHHHHHHHHcCC
Confidence            3444444433  25679999999999998888766433

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=92.71  E-value=0.14  Score=39.28  Aligned_cols=37  Identities=16%  Similarity=0.033  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...++...|.+.+..  ....+|||+|||+|+.+..|..
T Consensus        62 ~~p~~~~~l~~~l~~--~~~~~VLeiG~GsG~~t~~la~   98 (212)
T PRK00312         62 SQPYMVARMTELLEL--KPGDRVLEIGTGSGYQAAVLAH   98 (212)
T ss_pred             CcHHHHHHHHHhcCC--CCCCEEEEECCCccHHHHHHHH
Confidence            445556666665532  2467999999999998876654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=92.69  E-value=0.17  Score=42.40  Aligned_cols=26  Identities=19%  Similarity=0.037  Sum_probs=17.7

Q ss_pred             hHhhhccCCeEEEEccCccHHHHHHh
Q 032981           85 LEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        85 L~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      |..+.....++||+|||+|.++=.-.
T Consensus       155 l~~~~~~g~~vLDvG~GSGILaiaA~  180 (295)
T PF06325_consen  155 LEKYVKPGKRVLDVGCGSGILAIAAA  180 (295)
T ss_dssp             HHHHSSTTSEEEEES-TTSHHHHHHH
T ss_pred             HHHhccCCCEEEEeCCcHHHHHHHHH
Confidence            33445567799999999998765443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK08317 hypothetical protein; Provisional

Probab=92.58  E-value=0.17  Score=38.00  Aligned_cols=21  Identities=19%  Similarity=-0.012  Sum_probs=17.6

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||+|||+|.++..+..
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~   39 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELAR   39 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHH
Confidence            457899999999999887754

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=92.51  E-value=0.17  Score=36.99  Aligned_cols=22  Identities=27%  Similarity=0.217  Sum_probs=19.2

Q ss_pred             ccCCeEEEEccCccHHHHHHhc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+...++|+|||.|+++..|..
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~   45 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAH   45 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHH
Confidence            3577999999999999998865

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=92.40  E-value=0.038  Score=37.04  Aligned_cols=16  Identities=25%  Similarity=0.210  Sum_probs=11.8

Q ss_pred             EEEccCccHHHHHHhc
Q 032981           96 LCLGGSLEAVRRLLRG  111 (129)
Q Consensus        96 LDLGcgtG~l~~~L~~  111 (129)
                      ||+|||+|.++..+.+
T Consensus         1 LdiGcG~G~~~~~l~~   16 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLE   16 (99)
T ss_dssp             -EESTTTS-TTTTHHH
T ss_pred             CEeCccChHHHHHHHH
Confidence            7999999998887743

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=92.36  E-value=0.098  Score=44.01  Aligned_cols=22  Identities=14%  Similarity=-0.076  Sum_probs=18.6

Q ss_pred             CeEEEEccCccHHHHHHhccCC
Q 032981           93 PTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        93 ~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      ..|||+|||+|.++..|.+.|.
T Consensus        91 ~~ilDvGCGgGLLSepLArlga  112 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGA  112 (282)
T ss_pred             ceEEEeccCccccchhhHhhCC
Confidence            3599999999999999976554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=92.10  E-value=0.1  Score=39.94  Aligned_cols=22  Identities=14%  Similarity=0.043  Sum_probs=17.9

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+||||||+|.++..+...
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~   37 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQ   37 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHh
Confidence            4568999999999998777543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=92.07  E-value=0.16  Score=39.22  Aligned_cols=22  Identities=27%  Similarity=0.116  Sum_probs=18.1

Q ss_pred             ccCCeEEEEccCccHHHHHHhc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ....+|||+|||+|.++..+..
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~  107 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAK  107 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHH
Confidence            3456899999999999887754

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=91.91  E-value=0.18  Score=42.97  Aligned_cols=36  Identities=8%  Similarity=0.098  Sum_probs=23.3

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +.+-+.+.+.+. +.....+|||||||+|.++..+.+
T Consensus        98 e~~r~~~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~  133 (340)
T PLN02490         98 EDMRDDALEPAD-LSDRNLKVVDVGGGTGFTTLGIVK  133 (340)
T ss_pred             HHHHHHHHhhcc-cCCCCCEEEEEecCCcHHHHHHHH
Confidence            344444554443 233467999999999998776643

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=91.91  E-value=0.17  Score=42.76  Aligned_cols=22  Identities=14%  Similarity=-0.099  Sum_probs=17.9

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.++||+|||+|.++=+..+.
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kL  183 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKL  183 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHc
Confidence            7889999999999887655443

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=91.87  E-value=0.12  Score=45.04  Aligned_cols=46  Identities=22%  Similarity=0.078  Sum_probs=31.7

Q ss_pred             hHhhhcCCCChHHHHHHHHHHHhhhHhh----hc-----cCCeEEEEccCccHHH
Q 032981           61 DRAAWLTRPNDSFVDAVAENLLDRLEDC----RK-----TFPTALCLGGSLEAVR  106 (129)
Q Consensus        61 ~RAA~~y~~~~fLq~eVAerL~DRL~~I----kR-----~f~~aLDLGcgtG~l~  106 (129)
                      +++..+|.....+|+.++..+..-|...    ..     ..-.|+|+||++|..+
T Consensus        24 G~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~nt   78 (386)
T PLN02668         24 GKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNT   78 (386)
T ss_pred             CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccH
Confidence            4555567777778888888886555553    11     1237999999999654

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=91.64  E-value=0.18  Score=40.58  Aligned_cols=40  Identities=25%  Similarity=0.223  Sum_probs=31.2

Q ss_pred             HH-HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           72 SF-VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        72 fL-q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      || -..+++++.+.+..-  .-..|||+|+|+|.++..|.+.+
T Consensus        12 FL~~~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~   52 (262)
T PF00398_consen   12 FLVDPNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRG   52 (262)
T ss_dssp             EEEHHHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHS
T ss_pred             eeCCHHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhccc
Confidence            44 457788888877442  56789999999999999997654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=91.59  E-value=0.26  Score=42.18  Aligned_cols=22  Identities=14%  Similarity=0.061  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...++||||||+|.++..+.+.
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~  188 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEH  188 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHH
Confidence            4569999999999998877653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=91.22  E-value=0.16  Score=43.74  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=23.5

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+.+.+...  ...++||||||+|.++..|.+.
T Consensus        26 ~~~il~~l~~~--~~~~vLDlGcG~G~~~~~la~~   58 (475)
T PLN02336         26 RPEILSLLPPY--EGKSVLELGAGIGRFTGELAKK   58 (475)
T ss_pred             hhHHHhhcCcc--CCCEEEEeCCCcCHHHHHHHhh
Confidence            45555554332  3568999999999999988654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=91.21  E-value=0.2  Score=43.01  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=23.0

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+.+.+. + ....+|||||||+|..+..|..
T Consensus       255 te~l~~~~~-~-~~~~~vLDiGcG~G~~~~~la~  286 (475)
T PLN02336        255 TKEFVDKLD-L-KPGQKVLDVGCGIGGGDFYMAE  286 (475)
T ss_pred             HHHHHHhcC-C-CCCCEEEEEeccCCHHHHHHHH
Confidence            456666654 2 3467999999999988776654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=91.21  E-value=0.44  Score=36.27  Aligned_cols=20  Identities=15%  Similarity=-0.069  Sum_probs=17.0

Q ss_pred             CCeEEEEccCccHHHHHHhc
Q 032981           92 FPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+|||+|||+|.++..+.+
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~   65 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLAR   65 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHh
Confidence            66899999999998887754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=91.17  E-value=0.28  Score=38.89  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=22.4

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+-..|++-|. ++ .-.++||||||+|+.+..|..
T Consensus        59 ~~~a~~l~~L~-l~-pg~~VLeIGtGsGY~aAlla~   92 (209)
T PF01135_consen   59 SMVARMLEALD-LK-PGDRVLEIGTGSGYQAALLAH   92 (209)
T ss_dssp             HHHHHHHHHTT-C--TT-EEEEES-TTSHHHHHHHH
T ss_pred             HHHHHHHHHHh-cC-CCCEEEEecCCCcHHHHHHHH
Confidence            34444555554 33 467999999999999998864

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=91.13  E-value=0.18  Score=39.81  Aligned_cols=23  Identities=22%  Similarity=-0.000  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.++||||||.|..+-.|...|
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G   52 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQG   52 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCC
Confidence            47899999999999998887654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK04266 fibrillarin; Provisional

Probab=90.99  E-value=0.31  Score=38.90  Aligned_cols=22  Identities=14%  Similarity=0.064  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..|...
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~   93 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDI   93 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHh
Confidence            3569999999999998888653

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=90.80  E-value=0.27  Score=39.60  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=22.5

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+.+.+.+..  ....+|||||||+|..+..|..
T Consensus        40 ~~~~~l~~l~l--~~~~~VLDiGcG~G~~a~~la~   72 (263)
T PTZ00098         40 ATTKILSDIEL--NENSKVLDIGSGLGGGCKYINE   72 (263)
T ss_pred             HHHHHHHhCCC--CCCCEEEEEcCCCChhhHHHHh
Confidence            34555554422  2356899999999998887754

>PRK14968 putative methyltransferase; Provisional

Probab=90.76  E-value=0.37  Score=35.34  Aligned_cols=22  Identities=14%  Similarity=-0.017  Sum_probs=18.1

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...++||+|||+|.++..+...
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~   44 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN   44 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh
Confidence            4568999999999998887544

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=90.76  E-value=0.18  Score=42.69  Aligned_cols=21  Identities=14%  Similarity=0.110  Sum_probs=17.9

Q ss_pred             CCeEEEEccCccHHHHHHhcc
Q 032981           92 FPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+|||+|||+|.++..+.+.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~  217 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARH  217 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHh
Confidence            458999999999999888654

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=90.58  E-value=0.33  Score=39.46  Aligned_cols=22  Identities=9%  Similarity=0.240  Sum_probs=18.1

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...++||||||+|.++..+.+.
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~  170 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKH  170 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHH
Confidence            4679999999999988877543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=90.47  E-value=0.45  Score=41.10  Aligned_cols=38  Identities=16%  Similarity=0.050  Sum_probs=25.2

Q ss_pred             HHHHHHHHhhhHhhh--ccCCeEEEEccCccHHHHHHhcc
Q 032981           75 DAVAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        75 ~eVAerL~DRL~~Ik--R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+++.|.+.+....  ....++||+|||+|.++-.|.+.
T Consensus       279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~  318 (443)
T PRK13168        279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ  318 (443)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh
Confidence            444555555443322  23468999999999998888654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=90.19  E-value=0.16  Score=43.83  Aligned_cols=20  Identities=15%  Similarity=0.079  Sum_probs=17.1

Q ss_pred             CeEEEEccCccHHHHHHhcc
Q 032981           93 PTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        93 ~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+|||||||+|.++-.+.+.
T Consensus       230 ~~VLDLGCGtGvi~i~la~~  249 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDK  249 (378)
T ss_pred             CeEEEEeccccHHHHHHHHh
Confidence            58999999999998887554

>PRK00811 spermidine synthase; Provisional

Probab=90.03  E-value=0.26  Score=40.35  Aligned_cols=23  Identities=17%  Similarity=0.135  Sum_probs=19.3

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+|||||||+|..+..+.+.
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~   97 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKH   97 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcC
Confidence            35789999999999998877554

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=89.94  E-value=0.4  Score=39.24  Aligned_cols=22  Identities=9%  Similarity=-0.141  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...++||+|||+|.++-.+...
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~  142 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYA  142 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHH
Confidence            4578999999999998888643

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=89.88  E-value=0.28  Score=40.73  Aligned_cols=20  Identities=10%  Similarity=-0.147  Sum_probs=17.0

Q ss_pred             CeEEEEccCccHHHHHHhcc
Q 032981           93 PTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        93 ~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .++||+|||+|.++-.+...
T Consensus       135 ~~VLDlG~GsG~iai~la~~  154 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYA  154 (307)
T ss_pred             CEEEEEechhhHHHHHHHHH
Confidence            68999999999998877543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=89.67  E-value=0.33  Score=39.91  Aligned_cols=20  Identities=25%  Similarity=0.127  Sum_probs=17.2

Q ss_pred             eEEEEccCccHHHHHHhccC
Q 032981           94 TALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        94 ~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +|||||||+|.++-.|....
T Consensus       113 ~ilDlGTGSG~iai~la~~~  132 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG  132 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC
Confidence            89999999999998886543

>PRK14967 putative methyltransferase; Provisional

Probab=89.65  E-value=0.45  Score=36.97  Aligned_cols=21  Identities=14%  Similarity=-0.132  Sum_probs=17.7

Q ss_pred             CCeEEEEccCccHHHHHHhcc
Q 032981           92 FPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..++||+|||+|.++..+...
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~   57 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAA   57 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHc
Confidence            468999999999998877654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=89.54  E-value=0.3  Score=30.45  Aligned_cols=18  Identities=28%  Similarity=0.217  Sum_probs=15.0

Q ss_pred             eEEEEccCccHHHHHHhc
Q 032981           94 TALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        94 ~aLDLGcgtG~l~~~L~~  111 (129)
                      +++|+|||+|..+..+..
T Consensus         1 ~ildig~G~G~~~~~~~~   18 (107)
T cd02440           1 RVLDLGCGTGALALALAS   18 (107)
T ss_pred             CeEEEcCCccHHHHHHhc
Confidence            479999999998877754

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=89.22  E-value=0.31  Score=41.31  Aligned_cols=32  Identities=22%  Similarity=0.134  Sum_probs=22.5

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      -|++.|..-  ...+|||+|||.|.+.-.|.+..
T Consensus       149 lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~  180 (300)
T COG2813         149 LLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKS  180 (300)
T ss_pred             HHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhC
Confidence            345555442  23389999999999988886554

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=89.16  E-value=0.49  Score=38.07  Aligned_cols=18  Identities=22%  Similarity=0.012  Sum_probs=14.2

Q ss_pred             cCCeEEEEccCccHHHHH
Q 032981           91 TFPTALCLGGSLEAVRRL  108 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~  108 (129)
                      +-..|+|+|||||.++=.
T Consensus        45 ~g~~V~DlG~GTG~La~g   62 (198)
T COG2263          45 EGKTVLDLGAGTGILAIG   62 (198)
T ss_pred             CCCEEEEcCCCcCHHHHH
Confidence            456799999999977543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=88.95  E-value=0.33  Score=38.28  Aligned_cols=22  Identities=5%  Similarity=-0.299  Sum_probs=18.9

Q ss_pred             CCeEEEEccCccHHHHHHhccC
Q 032981           92 FPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+|||+|||.|.-+..|...|
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~G   56 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQG   56 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhCC
Confidence            4689999999999999997654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=88.89  E-value=0.62  Score=37.79  Aligned_cols=20  Identities=20%  Similarity=0.066  Sum_probs=16.8

Q ss_pred             CeEEEEccCccHHHHHHhcc
Q 032981           93 PTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        93 ~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .++||+|||+|.++-.+...
T Consensus       116 ~~vLDlG~GsG~i~l~la~~  135 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYE  135 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHH
Confidence            68999999999988877543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.86  E-value=0.49  Score=38.20  Aligned_cols=34  Identities=21%  Similarity=0.123  Sum_probs=25.1

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.-+|.+.|+.  +..++||+||||+|+.+..|.+.
T Consensus        60 ~vA~m~~~L~~--~~g~~VLEIGtGsGY~aAvla~l   93 (209)
T COG2518          60 MVARMLQLLEL--KPGDRVLEIGTGSGYQAAVLARL   93 (209)
T ss_pred             HHHHHHHHhCC--CCCCeEEEECCCchHHHHHHHHH
Confidence            44556655543  34689999999999999988654

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=88.72  E-value=0.42  Score=39.05  Aligned_cols=28  Identities=25%  Similarity=0.240  Sum_probs=19.0

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHH
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVR  106 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~  106 (129)
                      |-+++..|+.+.  .+.++||+|||+|...
T Consensus        21 vl~El~~r~p~f--~P~~vLD~GsGpGta~   48 (274)
T PF09243_consen   21 VLSELRKRLPDF--RPRSVLDFGSGPGTAL   48 (274)
T ss_pred             HHHHHHHhCcCC--CCceEEEecCChHHHH
Confidence            344455555443  5789999999999654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=88.57  E-value=0.48  Score=40.51  Aligned_cols=36  Identities=19%  Similarity=0.061  Sum_probs=23.6

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +++=.+++...|    .++  .-.+|||||||.|+..=.+.+
T Consensus       100 Sd~KW~rl~p~l----~~L--~gk~VLDIGC~nGY~~frM~~  135 (315)
T PF08003_consen  100 SDWKWDRLLPHL----PDL--KGKRVLDIGCNNGYYSFRMLG  135 (315)
T ss_pred             ccchHHHHHhhh----CCc--CCCEEEEecCCCcHHHHHHhh
Confidence            455555555444    333  456899999999988755543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=88.22  E-value=0.91  Score=38.56  Aligned_cols=37  Identities=16%  Similarity=0.041  Sum_probs=24.0

Q ss_pred             HHHHHHHhhhHhh-h-ccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDC-R-KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~I-k-R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ++++.|.+.+... . ....++||+|||+|.++-.+...
T Consensus       216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~  254 (374)
T TIGR02085       216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP  254 (374)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc
Confidence            4555555444332 1 23468999999999988777543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=88.20  E-value=2.2  Score=32.81  Aligned_cols=22  Identities=9%  Similarity=-0.112  Sum_probs=17.7

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....|||||||+|.++..+.+.
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~   69 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL   69 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc
Confidence            3568999999999988777544

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=88.06  E-value=0.68  Score=38.37  Aligned_cols=42  Identities=19%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             hHHHHH-HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981           71 DSFVDA-VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        71 ~fLq~e-VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      .||.+. +.+++.+-.. +.. .+.||+||+|.|.++..|.++++
T Consensus        11 nFL~d~~v~~kIv~~a~-~~~-~d~VlEIGpG~GaLT~~Ll~~~~   53 (259)
T COG0030          11 NFLIDKNVIDKIVEAAN-ISP-GDNVLEIGPGLGALTEPLLERAA   53 (259)
T ss_pred             ccccCHHHHHHHHHhcC-CCC-CCeEEEECCCCCHHHHHHHhhcC
Confidence            444443 3444443322 222 57999999999999999976654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=87.98  E-value=0.45  Score=37.42  Aligned_cols=22  Identities=23%  Similarity=0.089  Sum_probs=17.9

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...++||+|||+|.++..+...
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~  129 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKE  129 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHH
Confidence            4668999999999988877543

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=87.67  E-value=0.5  Score=34.93  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=19.9

Q ss_pred             ccCCeEEEEccCccHHHHHHhccC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..|..-+|||||.|.+.-.|...|
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~EG   80 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSEG   80 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhCC
Confidence            357788999999999999886554

; GO: 0008168 methyltransferase activity

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=87.54  E-value=0.49  Score=41.77  Aligned_cols=19  Identities=21%  Similarity=0.027  Sum_probs=16.0

Q ss_pred             CCeEEEEccCccHHHHHHh
Q 032981           92 FPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~  110 (129)
                      ..++||+|||+|.++-.|.
T Consensus       252 ~~rVLDLGcGSG~IaiaLA  270 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVA  270 (423)
T ss_pred             CCEEEEEeChhhHHHHHHH
Confidence            4589999999999887764

>PLN02366 spermidine synthase

Probab=87.44  E-value=0.47  Score=39.72  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=21.2

Q ss_pred             ccCCeEEEEccCccHHHHHHhccCCc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRVVL  115 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g~v  115 (129)
                      ..+.+||+||||+|.+...+.+...+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v  115 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSV  115 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCC
Confidence            35889999999999999888665444

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=87.36  E-value=0.61  Score=40.72  Aligned_cols=22  Identities=5%  Similarity=-0.221  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+||||||+|..+-.+...
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~  143 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKN  143 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHh
Confidence            4568999999999998888654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=87.15  E-value=1  Score=38.55  Aligned_cols=38  Identities=13%  Similarity=0.028  Sum_probs=26.2

Q ss_pred             HHHHHHHHhhhHhhhc--cCCeEEEEccCccHHHHHHhcc
Q 032981           75 DAVAENLLDRLEDCRK--TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR--~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.++.|.+++.....  ...++||+|||+|.++-.|...
T Consensus       274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~  313 (431)
T TIGR00479       274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ  313 (431)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh
Confidence            4556666665544322  3468999999999998888643

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=87.15  E-value=0.91  Score=34.62  Aligned_cols=36  Identities=14%  Similarity=0.036  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHH
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLL  109 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L  109 (129)
                      +-+.++-.-...++..  .....+||+|||+|.++-.+
T Consensus        23 ~t~~~~r~~~l~~l~~--~~~~~vlDlG~GtG~~s~~~   58 (198)
T PRK00377         23 MTKEEIRALALSKLRL--RKGDMILDIGCGTGSVTVEA   58 (198)
T ss_pred             CCHHHHHHHHHHHcCC--CCcCEEEEeCCcCCHHHHHH
Confidence            4444553333344422  24578999999999887655

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=86.56  E-value=0.41  Score=41.24  Aligned_cols=42  Identities=14%  Similarity=-0.111  Sum_probs=31.7

Q ss_pred             CChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        69 ~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.-++|++.+..+..-|.. . ...+|||+|||+|..+-.+...
T Consensus       224 G~~~iQd~~s~~~~~~l~~-~-~g~~VLDlgaG~G~~t~~la~~  265 (427)
T PRK10901        224 GWVSVQDAAAQLAATLLAP-Q-NGERVLDACAAPGGKTAHILEL  265 (427)
T ss_pred             ceEEEECHHHHHHHHHcCC-C-CCCEEEEeCCCCChHHHHHHHH
Confidence            3457788888888876643 2 4679999999999988777543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=86.37  E-value=1.2  Score=34.92  Aligned_cols=17  Identities=12%  Similarity=-0.263  Sum_probs=14.5

Q ss_pred             CCeEEEEccCccHHHHH
Q 032981           92 FPTALCLGGSLEAVRRL  108 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~  108 (129)
                      -.++||+|||+|.++-.
T Consensus        54 ~~~vLDl~~GsG~l~l~   70 (199)
T PRK10909         54 DARCLDCFAGSGALGLE   70 (199)
T ss_pred             CCEEEEcCCCccHHHHH
Confidence            45899999999999864

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=86.15  E-value=1  Score=36.26  Aligned_cols=20  Identities=20%  Similarity=-0.021  Sum_probs=16.3

Q ss_pred             CCeEEEEccCccHHHHHHhc
Q 032981           92 FPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..++||+|||+|.++-.+..
T Consensus        87 ~~~vLDlg~GsG~i~l~la~  106 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAA  106 (251)
T ss_pred             CCEEEEecCchHHHHHHHHH
Confidence            35899999999998877643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=86.14  E-value=0.93  Score=40.26  Aligned_cols=19  Identities=26%  Similarity=0.224  Sum_probs=16.1

Q ss_pred             CCeEEEEccCccHHHHHHh
Q 032981           92 FPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~  110 (129)
                      ..+|||+|||+|.++-.+.
T Consensus       139 ~~~VLDlG~GsG~iai~la  157 (506)
T PRK01544        139 FLNILELGTGSGCIAISLL  157 (506)
T ss_pred             CCEEEEccCchhHHHHHHH
Confidence            4689999999999887664

>PRK06922 hypothetical protein; Provisional

Probab=85.93  E-value=0.49  Score=44.10  Aligned_cols=21  Identities=10%  Similarity=0.050  Sum_probs=17.6

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||+|||+|..+..|.+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~  438 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEE  438 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHH
Confidence            467999999999998877754

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=85.78  E-value=1.3  Score=37.42  Aligned_cols=38  Identities=16%  Similarity=0.010  Sum_probs=25.2

Q ss_pred             HHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHhcc
Q 032981           75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+++.|.+.+.+... ....+||+|||+|.++-.|.+.
T Consensus       180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~  218 (353)
T TIGR02143       180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN  218 (353)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh
Confidence            3445566655544332 2347999999999998887653

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=85.70  E-value=0.74  Score=37.29  Aligned_cols=33  Identities=12%  Similarity=0.028  Sum_probs=21.2

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccH
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEA  104 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~  104 (129)
                      .++|.+.+...|.++..  ....-+|+|+|||||.
T Consensus        80 ~~~l~~~vlp~l~~~~~--~~~~~ri~d~GCgtGe  112 (264)
T smart00138       80 FEALEEKVLPLLIASRR--HGRRVRIWSAGCSTGE  112 (264)
T ss_pred             HHHHHHHHhHHHHHhcC--CCCCEEEEeccccCCh
Confidence            45666666666554311  1234689999999995

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=85.51  E-value=0.69  Score=37.21  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=19.8

Q ss_pred             hhhccCCeEEEEccCccHHHHHHhcc
Q 032981           87 DCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        87 ~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .-...+..+||+|||.|.++..|..+
T Consensus        39 Lp~~ry~~alEvGCs~G~lT~~LA~r   64 (201)
T PF05401_consen   39 LPRRRYRRALEVGCSIGVLTERLAPR   64 (201)
T ss_dssp             HTTSSEEEEEEE--TTSHHHHHHGGG
T ss_pred             cCccccceeEecCCCccHHHHHHHHh
Confidence            33456889999999999999999764

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=85.38  E-value=0.62  Score=37.07  Aligned_cols=37  Identities=8%  Similarity=0.037  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      .-++||=--.+.+|.-  +.-++++|+|||||.++-.+.
T Consensus        17 ~TK~EIRal~ls~L~~--~~g~~l~DIGaGtGsi~iE~a   53 (187)
T COG2242          17 MTKEEIRALTLSKLRP--RPGDRLWDIGAGTGSITIEWA   53 (187)
T ss_pred             CcHHHHHHHHHHhhCC--CCCCEEEEeCCCccHHHHHHH
Confidence            3445555555555544  356799999999999887765

>PRK04457 spermidine synthase; Provisional

Probab=85.33  E-value=0.55  Score=38.04  Aligned_cols=21  Identities=10%  Similarity=0.056  Sum_probs=18.0

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+|||||||+|.++..+.+
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~   86 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYT   86 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHH
Confidence            577899999999999987754

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=85.12  E-value=1.6  Score=36.92  Aligned_cols=37  Identities=24%  Similarity=0.104  Sum_probs=25.5

Q ss_pred             HHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981           75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .++++.|.+.+..... ...++||++||+|.++-.|.+
T Consensus       189 ~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~  226 (362)
T PRK05031        189 AAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALAR  226 (362)
T ss_pred             HHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHh
Confidence            3456666666554332 235799999999999887754

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=85.04  E-value=1.5  Score=37.66  Aligned_cols=35  Identities=23%  Similarity=0.308  Sum_probs=22.1

Q ss_pred             HHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHH
Q 032981           75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLL  109 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L  109 (129)
                      +|..+.+.|-+..-.. ....+||+|||+|.++-.+
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsl  166 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSL  166 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHH
Confidence            4444545444433222 3558999999999887655

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=84.87  E-value=1.1  Score=39.47  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhhhHhhhcc--CCeEEEEccCccHHHHHH
Q 032981           73 FVDAVAENLLDRLEDCRKT--FPTALCLGGSLEAVRRLL  109 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~--f~~aLDLGcgtG~l~~~L  109 (129)
                      -++.|.+-|.|+...-+..  ...|+|+|||+|.+....
T Consensus       166 Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~a  204 (448)
T PF05185_consen  166 YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFA  204 (448)
T ss_dssp             HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHH
T ss_pred             HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHH
Confidence            3445566666666554322  468999999999987543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK01581 speE spermidine synthase; Validated

Probab=84.77  E-value=0.68  Score=40.36  Aligned_cols=25  Identities=20%  Similarity=0.036  Sum_probs=19.8

Q ss_pred             ccCCeEEEEccCccHHHHHHhccCC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      ..+.+||+||||+|.....+.+...
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~  173 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYET  173 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCC
Confidence            4588999999999998877765443

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=84.72  E-value=0.99  Score=36.53  Aligned_cols=39  Identities=15%  Similarity=0.093  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .||.=.+-|.=.+-|.  ...+..+++||||+|.++..|..
T Consensus        25 TFlLlDaLekd~~eL~--~~~~~i~lEIG~GSGvvstfL~~   63 (209)
T KOG3191|consen   25 TFLLLDALEKDAAELK--GHNPEICLEIGCGSGVVSTFLAS   63 (209)
T ss_pred             hhHHHHHHHHHHHHHh--hcCceeEEEecCCcchHHHHHHH
Confidence            4654444333332222  23588899999999999999864

>TIGR00417 speE spermidine synthase

Probab=84.51  E-value=1.6  Score=35.19  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=18.7

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+||+||||+|.++..+.+.
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~   93 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKH   93 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhC
Confidence            35779999999999988777544

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=84.29  E-value=0.86  Score=36.06  Aligned_cols=22  Identities=9%  Similarity=-0.284  Sum_probs=18.7

Q ss_pred             CCeEEEEccCccHHHHHHhccC
Q 032981           92 FPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      -.+|||+|||.|.-+..|...|
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~G   59 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQG   59 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhCC
Confidence            4689999999999999887654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=84.22  E-value=0.87  Score=38.43  Aligned_cols=21  Identities=14%  Similarity=0.089  Sum_probs=17.7

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||+|||+|+++..+.+
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~  100 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSR  100 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHH
Confidence            457999999999999887754

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=83.68  E-value=0.97  Score=35.85  Aligned_cols=19  Identities=26%  Similarity=-0.064  Sum_probs=14.9

Q ss_pred             cCCeEEEEccCccHHHHHH
Q 032981           91 TFPTALCLGGSLEAVRRLL  109 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L  109 (129)
                      ...+|||+|||+|...-.+
T Consensus        77 ~g~~VLDiG~G~G~~~~~~   95 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLA   95 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHH
Confidence            4679999999999765433

>PRK03612 spermidine synthase; Provisional

Probab=83.08  E-value=1.5  Score=38.93  Aligned_cols=25  Identities=20%  Similarity=0.029  Sum_probs=20.3

Q ss_pred             ccCCeEEEEccCccHHHHHHhccCC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      .++.+|||||||+|..+..+.+.+.
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~  320 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPD  320 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCC
Confidence            4578999999999999988765543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=82.05  E-value=0.96  Score=39.12  Aligned_cols=21  Identities=14%  Similarity=0.031  Sum_probs=17.0

Q ss_pred             CeEEEEccCccHHHHHHhccC
Q 032981           93 PTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        93 ~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..|||+|||||.++-.-.+.|
T Consensus        62 K~VlDVGcGtGILS~F~akAG   82 (346)
T KOG1499|consen   62 KTVLDVGCGTGILSMFAAKAG   82 (346)
T ss_pred             CEEEEcCCCccHHHHHHHHhC
Confidence            589999999999887665544

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=81.84  E-value=1.2  Score=34.60  Aligned_cols=20  Identities=25%  Similarity=0.293  Sum_probs=16.2

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      .+.+++|||+|+|.++..+.
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~  119 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALA  119 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHH
T ss_pred             CccEEEeccCcchHHHHHHH
Confidence            46789999999999988774

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=81.73  E-value=2.4  Score=36.89  Aligned_cols=24  Identities=21%  Similarity=-0.016  Sum_probs=20.9

Q ss_pred             ccCCeEEEEccCccHHHHHHhccC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .....+|||||.+|.++..|.++|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG  233 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRG  233 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC
Confidence            456799999999999999997765

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=81.40  E-value=1.3  Score=34.41  Aligned_cols=21  Identities=19%  Similarity=0.055  Sum_probs=15.7

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+.+||||||.|.+.-.+..
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~   37 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAK   37 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHH
Confidence            344899999999988877743

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=81.04  E-value=0.9  Score=39.19  Aligned_cols=40  Identities=13%  Similarity=-0.083  Sum_probs=27.8

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .-++|++.+.-+.+.|. + ....+|||+|||+|..+-.+..
T Consensus       231 ~~~~qd~~s~lv~~~l~-~-~~g~~VLDlgaG~G~~t~~la~  270 (444)
T PRK14902        231 LITIQDESSMLVAPALD-P-KGGDTVLDACAAPGGKTTHIAE  270 (444)
T ss_pred             eEEEEChHHHHHHHHhC-C-CCCCEEEEeCCCCCHHHHHHHH
Confidence            34667777776665553 2 2357899999999988776643

>PHA03412 putative methyltransferase; Provisional

Probab=80.92  E-value=1.6  Score=35.91  Aligned_cols=19  Identities=5%  Similarity=-0.011  Sum_probs=16.4

Q ss_pred             CCeEEEEccCccHHHHHHh
Q 032981           92 FPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~  110 (129)
                      ..+|||+|||+|.++-.+.
T Consensus        50 ~grVLDlG~GSG~Lalala   68 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMV   68 (241)
T ss_pred             CCEEEEccChHHHHHHHHH
Confidence            5699999999999987664

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=80.77  E-value=1.3  Score=36.16  Aligned_cols=20  Identities=5%  Similarity=0.032  Sum_probs=12.5

Q ss_pred             CeEEEEccCccHHHHHHhcc
Q 032981           93 PTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        93 ~~aLDLGcgtG~l~~~L~~~  112 (129)
                      -.|.|+|||.+.+++.+...
T Consensus        74 ~viaD~GCGdA~la~~~~~~   93 (219)
T PF05148_consen   74 LVIADFGCGDAKLAKAVPNK   93 (219)
T ss_dssp             S-EEEES-TT-HHHHH--S-
T ss_pred             EEEEECCCchHHHHHhcccC
Confidence            48999999999999888643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=80.74  E-value=0.82  Score=39.31  Aligned_cols=40  Identities=15%  Similarity=-0.045  Sum_probs=29.9

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .-++|++.+.-+...|.- . ...+|||+|||+|..+-.+..
T Consensus       219 ~~~~Qd~~s~~~~~~L~~-~-~g~~VLDlcag~G~kt~~la~  258 (426)
T TIGR00563       219 WVTVQDASAQWVATWLAP-Q-NEETILDACAAPGGKTTHILE  258 (426)
T ss_pred             eEEEECHHHHHHHHHhCC-C-CCCeEEEeCCCccHHHHHHHH
Confidence            346788888888877753 2 357999999999987766643

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PTZ00146 fibrillarin; Provisional

Probab=80.14  E-value=1.4  Score=37.21  Aligned_cols=37  Identities=11%  Similarity=0.138  Sum_probs=25.0

Q ss_pred             HHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981           75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .-.|.-++-=|..+.. .-.+|||||||+|.++..+..
T Consensus       115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAd  152 (293)
T PTZ00146        115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSD  152 (293)
T ss_pred             cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHH
Confidence            3344445555555533 345899999999999888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.29
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	97.18
3ege_A	261	Putative methyltransferase from antibiotic biosyn	97.0
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	96.98
2p7i_A	250	Hypothetical protein; putative methyltransferase,	96.89
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.88
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	96.87
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	96.78
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.75
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	96.7
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.66
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.63
1ws6_A	171	Methyltransferase; structural genomics, riken stru	96.59
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	96.52
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	96.5
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.5
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.45
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.45
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	96.45
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.41
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	96.41
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	96.38
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	96.38
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	96.36
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.28
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.27
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	96.27
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.27
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	96.24
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	96.2
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.15
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.1
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	96.1
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	96.09
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.07
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	96.05
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.05
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.03
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	96.01
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	95.98
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	95.98
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	95.96
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	95.94
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.94
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	95.92
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	95.92
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.92
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	95.9
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	95.9
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.89
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	95.89
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	95.88
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.88
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	95.88
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	95.88
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	95.87
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	95.86
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.78
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	95.75
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	95.74
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	95.74
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.72
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	95.7
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	95.7
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	95.69
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	95.68
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.65
2esr_A	177	Methyltransferase; structural genomics, hypothetic	95.64
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.64
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.58
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.57
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	95.54
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.54
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	95.51
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.51
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	95.51
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.51
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	95.5
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	95.5
3lcc_A	235	Putative methyl chloride transferase; halide methy	95.49
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	95.45
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.45
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.41
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	95.4
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	95.4
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	95.39
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	95.36
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	95.33
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	95.3
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	95.3
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.3
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	95.29
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.29
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	95.29
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	95.27
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	95.26
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.26
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	95.26
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.26
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	95.25
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.21
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	95.19
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.17
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	95.16
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	95.13
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	95.09
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	95.06
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	95.03
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.03
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	94.97
3cc8_A	230	Putative methyltransferase; structural genomics, j	94.95
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	94.93
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	94.91
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	94.87
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	94.82
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	94.81
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	94.8
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	94.79
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	94.78
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	94.77
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	94.76
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	94.71
1xxl_A	239	YCGJ protein; structural genomics, protein structu	94.64
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	94.59
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	94.56
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	94.55
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	94.54
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	94.51
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	94.5
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	94.46
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	94.44
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	94.43
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	94.43
2b3t_A	276	Protein methyltransferase HEMK; translation termin	94.42
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	94.4
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	94.39
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	94.35
2h00_A	254	Methyltransferase 10 domain containing protein; st	94.33
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	94.28
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	94.26
3i9f_A	170	Putative type 11 methyltransferase; structural gen	94.25
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	94.21
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	94.18
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	94.18
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	94.13
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	94.08
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	94.08
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	94.03
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	94.02
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	94.0
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	93.99
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	93.97
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	93.96
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	93.92
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	93.9
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	93.85
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	93.77
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	93.76
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	93.74
2o07_A	304	Spermidine synthase; structural genomics, structur	93.72
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	93.72
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	93.68
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	93.64
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	93.64
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	93.61
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	93.55
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	93.53
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	93.51
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	93.48
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	93.47
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	93.45
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	93.44
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	93.44
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	93.43
2i7c_A	283	Spermidine synthase; transferase, structural genom	93.42
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	93.34
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	93.33
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	93.31
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	93.21
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	93.18
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	93.14
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	93.08
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	93.08
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	93.08
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	93.05
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	93.03
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	93.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	92.98
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	92.96
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	92.82
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	92.8
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	92.76
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	92.71
3lpm_A	259	Putative methyltransferase; structural genomics, p	92.68
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	92.68
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	92.65
3ocj_A	305	Putative exported protein; structural genomics, PS	92.64
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	92.63
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	92.61
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	92.59
2frn_A	278	Hypothetical protein PH0793; structural genomics,	92.38
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	92.29
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	92.29
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	92.26
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	92.23
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	92.19
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	92.1
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	92.06
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	92.06
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	92.03
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	91.99
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	91.98
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	91.87
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	91.86
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	91.85
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	91.76
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	91.74
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	91.72
2b25_A	336	Hypothetical protein; structural genomics, methyl	91.66
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	91.64
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	91.59
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	91.56
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	91.56
2pt6_A	321	Spermidine synthase; transferase, structural genom	91.52
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	91.29
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	91.2
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	90.82
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	90.69
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	90.63
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	90.51
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	90.19
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	90.13
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	89.83
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	89.71
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	89.23
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	89.22
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	89.19
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	88.32
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	88.31
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	88.22
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	87.51
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	87.3
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	87.16
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	86.99
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	86.76
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	86.59
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	86.49
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	86.28
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	86.15
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	86.03
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	85.95
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	85.66
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	85.48
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	84.68
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	84.19
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	84.11
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	83.94
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	83.83
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	82.92
3ll7_A	410	Putative methyltransferase; methytransferase, stru	82.77
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	82.34
3k6r_A	278	Putative transferase PH0793; structural genomics,	82.18
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	80.76
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	80.26
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	80.14

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.29  E-value=0.00025  Score=55.39  Aligned_cols=42  Identities=14%  Similarity=0.092  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .|+++.+.+++.+++......+.+|||||||+|.++..|.+.
T Consensus        14 ~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~   55 (313)
T 3bgv_A           14 NWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG   55 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc
Confidence            577888888888888876667889999999999998888653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=97.18  E-value=8.4e-05  Score=55.53  Aligned_cols=53  Identities=21%  Similarity=0.121  Sum_probs=32.5

Q ss_pred             HhHhhhcCCCChHHHHHHHHHHHhhhHh---hhccCCeEEEEccCccHHHHHHhcc
Q 032981           60 RDRAAWLTRPNDSFVDAVAENLLDRLED---CRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        60 r~RAA~~y~~~~fLq~eVAerL~DRL~~---IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +++.+..|+.......+..+.+.+.+..   -.....+|||+|||+|.++..|.+.
T Consensus         5 ~~~~a~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~   60 (263)
T 2yqz_A            5 LLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR   60 (263)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT
T ss_pred             hHHHHHHHhhhcccChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC
Confidence            3444443433222234556666666532   1235679999999999999888654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=97.00  E-value=0.00041  Score=52.83  Aligned_cols=49  Identities=6%  Similarity=-0.069  Sum_probs=30.8

Q ss_pred             HhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           62 RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        62 RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+..|+........+++.+.+.+..  ....+|||||||+|.++..|.+.
T Consensus         7 ~~a~~y~~~~~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~   55 (261)
T 3ege_A            7 SIGKQYSQTRVPDIRIVNAIINLLNL--PKGSVIADIGAGTGGYSVALANQ   55 (261)
T ss_dssp             ------CCSBCCCHHHHHHHHHHHCC--CTTCEEEEETCTTSHHHHHHHTT
T ss_pred             HHHHHHhhcccccHHHHHHHHHHhCC--CCCCEEEEEcCcccHHHHHHHhC
Confidence            33445555443344667777766642  35779999999999999988653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=96.98  E-value=0.001  Score=47.91  Aligned_cols=37  Identities=30%  Similarity=0.275  Sum_probs=27.9

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+.|.+.|........+|||+|||+|.++..|.+.+
T Consensus         9 ~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~   45 (170)
T 3q87_B            9 DTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN   45 (170)
T ss_dssp             HHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS
T ss_pred             cHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC
Confidence            3455666665544456799999999999999997754

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=96.89  E-value=0.0012  Score=48.27  Aligned_cols=42  Identities=12%  Similarity=0.006  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+......+.+.+.+.... ...+|||||||+|.++..|.+.+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~   64 (250)
T 2p7i_A           23 NFDFDVMHPFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF   64 (250)
T ss_dssp             CHHHHTHHHHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC
T ss_pred             ccchhhHHHHHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhC
Confidence            3444444455665555432 46789999999999999997654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.88  E-value=0.00034  Score=53.94  Aligned_cols=49  Identities=8%  Similarity=0.003  Sum_probs=32.5

Q ss_pred             hhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           63 AAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        63 AA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +...|.+.-.....+++.+.+.+..  ....+|||||||+|.++..|...+
T Consensus         4 ~~k~~gQ~fl~d~~~~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~l~~~~   52 (244)
T 1qam_A            4 KNIKHSQNFITSKHNIDKIMTNIRL--NEHDNIFEIGSGKGHFTLELVQRC   52 (244)
T ss_dssp             ------CCBCCCHHHHHHHHTTCCC--CTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             CCccCCccccCCHHHHHHHHHhCCC--CCCCEEEEEeCCchHHHHHHHHcC
Confidence            3445666545567788888877643  246789999999999999886543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=96.87  E-value=0.00078  Score=52.73  Aligned_cols=50  Identities=16%  Similarity=-0.080  Sum_probs=25.5

Q ss_pred             HHhHhhhcCCCC--hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           59 QRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        59 ~r~RAA~~y~~~--~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +|+..|..|+.+  .|= +    .+.+.|........+|||||||+|.++..|.+.+
T Consensus        10 ~F~~~a~~Y~~~Rp~yp-~----~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~   61 (257)
T 4hg2_A           10 HFTPVADAYRAFRPRYP-R----ALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF   61 (257)
T ss_dssp             ----------CCCCCCC-H----HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCcH-H----HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC
Confidence            466666666543  121 1    2333344444446789999999999999997654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=96.78  E-value=0.0013  Score=51.01  Aligned_cols=60  Identities=13%  Similarity=0.090  Sum_probs=37.3

Q ss_pred             ccCcCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhh--ccCCeEEEEccCccHHH
Q 032981           47 RVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCR--KTFPTALCLGGSLEAVR  106 (129)
Q Consensus        47 ~~~IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~Ik--R~f~~aLDLGcgtG~l~  106 (129)
                      ...+.|...-...+.+-...+......++.+.+.+.+-+..+.  ....+|||||||+|.++
T Consensus         6 ~~~~~d~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~   67 (292)
T 2aot_A            6 RSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEID   67 (292)
T ss_dssp             CBGGGCHHHHHHHHHHHHTTBSHHHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHH
T ss_pred             ccccccHHHHHHHHHHHHHhccHHHHHHHHHHHhchhHHhhccCCCCCCeEEEEcCCCCHHH
Confidence            3457788888888887665444344444444444443333222  23458999999999654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.75  E-value=0.00049  Score=51.30  Aligned_cols=47  Identities=19%  Similarity=0.078  Sum_probs=35.8

Q ss_pred             hhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           64 AWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        64 A~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +..|+...-.+.+.+.++.+++..  ....+|||||||+|.++..|...
T Consensus         8 ~~~y~~~~~~~~~~~~~l~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~   54 (259)
T 2p35_A            8 AQQYLKFEDERTRPARDLLAQVPL--ERVLNGYDLGCGPGNSTELLTDR   54 (259)
T ss_dssp             CGGGBCCCCGGGHHHHHHHTTCCC--SCCSSEEEETCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC--CCCCEEEEecCcCCHHHHHHHHh
Confidence            345666666677888888887753  34679999999999998888554

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=96.70  E-value=0.0024  Score=48.12  Aligned_cols=63  Identities=10%  Similarity=-0.073  Sum_probs=36.5

Q ss_pred             ccCcCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           47 RVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        47 ~~~IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ....||.. .....+......+ .  ..+..++.+.+.|........+|||||||+|.++..|.+.+
T Consensus        10 ~~~~y~~~-~a~~yd~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~   72 (263)
T 3pfg_A           10 PQADYSGE-IAELYDLVHQGKG-K--DYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF   72 (263)
T ss_dssp             CBCSCCHH-HHHHHHHHHHHTT-C--CHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS
T ss_pred             cccccchh-HHHHHHHHhhcCC-C--CHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC
Confidence            34578853 2333344332111 1  12234445555555444456799999999999999997654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.66  E-value=0.002  Score=46.44  Aligned_cols=56  Identities=18%  Similarity=-0.028  Sum_probs=34.4

Q ss_pred             HHHHHHhHhhhcCCCChHHHHHH--HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           55 LKRKQRDRAAWLTRPNDSFVDAV--AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        55 ~vr~~r~RAA~~y~~~~fLq~eV--AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+...++..+..|+. .|-....  .+.+.+.+..+. ...+|||+|||+|.++..|.+.
T Consensus        10 ~~~~~~~~~a~~y~~-~~~~~~~~~~~~~~~~l~~~~-~~~~vLdiG~G~G~~~~~l~~~   67 (218)
T 3ou2_A           10 SQLSYYRARASEYDA-TFVPYMDSAAPAALERLRAGN-IRGDVLELASGTGYWTRHLSGL   67 (218)
T ss_dssp             HHHHHHHHHGGGHHH-HHHHHHTTTHHHHHHHHTTTT-SCSEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhcCC-CCCeEEEECCCCCHHHHHHHhc
Confidence            344556665554443 2222222  455666665443 3569999999999999888654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.63  E-value=0.00061  Score=54.32  Aligned_cols=49  Identities=16%  Similarity=0.001  Sum_probs=33.8

Q ss_pred             HhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           62 RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        62 RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ++...+.++-.....+++++.+.+.. .. . .|||||||+|.++..|.+.+
T Consensus        20 ~~~k~~GQnfL~d~~i~~~Iv~~~~~-~~-~-~VLEIG~G~G~lt~~L~~~~   68 (271)
T 3fut_A           20 FADKRFGQNFLVSEAHLRRIVEAARP-FT-G-PVFEVGPGLGALTRALLEAG   68 (271)
T ss_dssp             CCSTTSSCCEECCHHHHHHHHHHHCC-CC-S-CEEEECCTTSHHHHHHHHTT
T ss_pred             CccccCCccccCCHHHHHHHHHhcCC-CC-C-eEEEEeCchHHHHHHHHHcC
Confidence            33334555433355688888877643 32 3 89999999999999986654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=96.59  E-value=0.0033  Score=43.61  Aligned_cols=23  Identities=13%  Similarity=-0.296  Sum_probs=19.0

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||+|||+|.++..+.+.+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~   63 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG   63 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC
Confidence            46789999999999988886543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.52  E-value=0.0047  Score=44.87  Aligned_cols=38  Identities=21%  Similarity=0.046  Sum_probs=27.3

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +..+.+.+.+........+|||+|||+|.++..|...+
T Consensus        23 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~   60 (227)
T 1ve3_A           23 SRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG   60 (227)
T ss_dssp             HHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC
Confidence            44555555555444447799999999999998886654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=96.50  E-value=0.0029  Score=46.30  Aligned_cols=39  Identities=10%  Similarity=0.135  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +..+..+.+.+.+..  ....+|||||||+|.++..|.+.+
T Consensus        13 ~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~   51 (217)
T 3jwh_A           13 LNQQRMNGVVAALKQ--SNARRVIDLGCGQGNLLKILLKDS   51 (217)
T ss_dssp             HHHHHHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHh--cCCCEEEEeCCCCCHHHHHHHhhC
Confidence            344445556655543  246799999999999999987654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.50  E-value=0.0023  Score=47.68  Aligned_cols=36  Identities=14%  Similarity=0.086  Sum_probs=26.4

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+++.+.+..++ ...+|||||||+|.++..|.+.
T Consensus        27 ~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~   62 (240)
T 3dli_A           27 LVKARLRRYIPYFK-GCRRVLDIGCGRGEFLELCKEE   62 (240)
T ss_dssp             HHHHHHGGGGGGTT-TCSCEEEETCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhc-CCCeEEEEeCCCCHHHHHHHhC
Confidence            45555665555543 4578999999999999888654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.45  E-value=0.00051  Score=54.56  Aligned_cols=62  Identities=13%  Similarity=-0.067  Sum_probs=36.1

Q ss_pred             cCcCCHHHHHHHHhHhhhcCCCChHHH--HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           48 VSIFDRHLKRKQRDRAAWLTRPNDSFV--DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        48 ~~IFDR~~vr~~r~RAA~~y~~~~fLq--~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      |.+|+.  ++..+++.+..|.+..+-.  .+..+.+.+.+..  ....+|||||||+|.++..|.+.+
T Consensus         4 ~~~~~s--~a~~wd~~a~~f~~~~~~~~~~~~~~~il~~l~l--~~g~~VLDlGcGtG~~a~~La~~g   67 (261)
T 3iv6_A            4 MTITNS--KAEAWELIGNQFWTIGRVAARPSDRENDIFLENI--VPGSTVAVIGASTRFLIEKALERG   67 (261)
T ss_dssp             CTTTCT--THHHHHTTTTHHHHTSCGGGSCCHHHHHHHTTTC--CTTCEEEEECTTCHHHHHHHHHTT
T ss_pred             hhhhhh--hhhHHHHHHHHHHHHhhccccHHHHHHHHHhcCC--CCcCEEEEEeCcchHHHHHHHhcC
Confidence            445554  3355666554322221111  2445556655532  245699999999999998886543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.45  E-value=0.0011  Score=49.54  Aligned_cols=22  Identities=9%  Similarity=-0.014  Sum_probs=18.8

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..|.+.
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~   81 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEA   81 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS
T ss_pred             CCCeEEEEeccCCHHHHHHHhc
Confidence            4568999999999999988653

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=96.45  E-value=0.0013  Score=48.53  Aligned_cols=33  Identities=15%  Similarity=0.020  Sum_probs=24.3

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.+........+|||||||+|.++..|.+.
T Consensus        42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~   74 (242)
T 3l8d_A           42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT   74 (242)
T ss_dssp             THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc
Confidence            344444444446779999999999999988665

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.41  E-value=0.0044  Score=44.93  Aligned_cols=36  Identities=8%  Similarity=-0.129  Sum_probs=25.6

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+.+.+........+|||+|||+|.++..+.+.+
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~   82 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLG   82 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCC
Confidence            344444444444467799999999999998886643

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.41  E-value=0.0063  Score=46.02  Aligned_cols=23  Identities=26%  Similarity=0.183  Sum_probs=19.8

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..|.+.+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~   76 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERG   76 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcC
Confidence            67799999999999999887653

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=96.38  E-value=0.0039  Score=47.60  Aligned_cols=32  Identities=19%  Similarity=0.071  Sum_probs=23.3

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+-|..+.....+|||||||+|.++..|.+.
T Consensus        58 l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~   89 (285)
T 4htf_A           58 LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAER   89 (285)
T ss_dssp             HHHHHHHTCSSCCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHhcCCCCCEEEEeCCcchHHHHHHHHC
Confidence            33334444445679999999999999988654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=96.38  E-value=0.0014  Score=51.19  Aligned_cols=46  Identities=13%  Similarity=0.095  Sum_probs=33.0

Q ss_pred             cCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        66 ~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.++-.....+.+++.+.+..-  ...+|||||||+|.++..|.+.+
T Consensus         8 ~~GQnfl~d~~i~~~iv~~~~~~--~~~~VLDiG~G~G~lt~~L~~~~   53 (249)
T 3ftd_A            8 SFGQHLLVSEGVLKKIAEELNIE--EGNTVVEVGGGTGNLTKVLLQHP   53 (249)
T ss_dssp             CCCSSCEECHHHHHHHHHHTTCC--TTCEEEEEESCHHHHHHHHTTSC
T ss_pred             cccccccCCHHHHHHHHHhcCCC--CcCEEEEEcCchHHHHHHHHHcC
Confidence            35443333457788888766432  46789999999999999997763

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=96.36  E-value=0.0045  Score=45.24  Aligned_cols=39  Identities=13%  Similarity=0.061  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +.....+.+.+.+..  ....+|||||||+|.++..|.+.+
T Consensus        13 ~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~   51 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKS--VNAKKVIDLGCGEGNLLSLLLKDK   51 (219)
T ss_dssp             HHHHHHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHTST
T ss_pred             chHHHHHHHHHHHhh--cCCCEEEEecCCCCHHHHHHHhcC
Confidence            344444555555543  246799999999999999997654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.28  E-value=0.0015  Score=51.36  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+++.+.+.+..  ....+|||||||+|.++..|.+.+
T Consensus        15 ~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~~   51 (255)
T 3tqs_A           15 SFVLQKIVSAIHP--QKTDTLVEIGPGRGALTDYLLTEC   51 (255)
T ss_dssp             HHHHHHHHHHHCC--CTTCEEEEECCTTTTTHHHHTTTS
T ss_pred             HHHHHHHHHhcCC--CCcCEEEEEcccccHHHHHHHHhC
Confidence            5677778776643  246789999999999999997654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.27  E-value=0.011  Score=42.53  Aligned_cols=57  Identities=16%  Similarity=-0.020  Sum_probs=35.6

Q ss_pred             HHHHHHHhHhhhcCCC------ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           54 HLKRKQRDRAAWLTRP------NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        54 ~~vr~~r~RAA~~y~~------~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+...++..+..|+.      ...-.......+.+.+...  ...+|||+|||+|.++..|.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~   73 (227)
T 3e8s_A           11 DALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGR--QPERVLDLGCGEGWLLRALADR   73 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHT--CCSEEEEETCTTCHHHHHHHTT
T ss_pred             HHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcC--CCCEEEEeCCCCCHHHHHHHHC
Confidence            4556666665544332      1222222444566655543  4689999999999999988765

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=96.27  E-value=0.0046  Score=45.29  Aligned_cols=36  Identities=8%  Similarity=0.025  Sum_probs=25.0

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ++.+.+.|........+|||+|||+|.++..|.+.+
T Consensus        27 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~   62 (239)
T 3bxo_A           27 ASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF   62 (239)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC
Confidence            344444444433457799999999999998886543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.27  E-value=0.0069  Score=44.82  Aligned_cols=58  Identities=12%  Similarity=-0.109  Sum_probs=35.8

Q ss_pred             CHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           52 DRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        52 DR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      |.+.+.+..+.-+..+.....+..+.++-|.. +.... ...+|||||||+|..+..|..
T Consensus        21 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~~~vLdiG~G~G~~~~~la~   78 (221)
T 3u81_A           21 DPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDA-VIREY-SPSLVLELGAYCGYSAVRMAR   78 (221)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGCCHHHHHHHHH-HHHHH-CCSEEEEECCTTSHHHHHHHT
T ss_pred             CHHHHHHHHHHHhhhcCcCcccCHHHHHHHHH-HHHhc-CCCEEEEECCCCCHHHHHHHH
Confidence            55555555555444333334455555554443 33332 578999999999999888865

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=96.24  E-value=0.0052  Score=44.95  Aligned_cols=39  Identities=10%  Similarity=0.107  Sum_probs=26.8

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +...+.+.+.+........+|||+|||+|.++..|.+.+
T Consensus        21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~   59 (246)
T 1y8c_A           21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF   59 (246)
T ss_dssp             HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC
Confidence            344555555554432356799999999999998887653

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=96.20  E-value=0.0045  Score=46.00  Aligned_cols=37  Identities=8%  Similarity=-0.051  Sum_probs=27.3

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+++.+...+.... ...+|||+|||+|.++..|...+
T Consensus        64 ~~~~~l~~~~~~~~-~~~~vLD~gcG~G~~~~~la~~~  100 (241)
T 3gdh_A           64 KIAEHIAGRVSQSF-KCDVVVDAFCGVGGNTIQFALTG  100 (241)
T ss_dssp             HHHHHHHHHHHHHS-CCSEEEETTCTTSHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhcc-CCCEEEECccccCHHHHHHHHcC
Confidence            45666666665543 56799999999999998886654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.15  E-value=0.0065  Score=43.68  Aligned_cols=37  Identities=22%  Similarity=0.036  Sum_probs=24.2

Q ss_pred             HHHHHHHhhhHhh-hccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~I-kR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.+.+.|... .....+|||+|||+|.++..+...
T Consensus        28 ~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~   65 (189)
T 3p9n_A           28 RVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR   65 (189)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC
Confidence            4445555555432 135678999999999998865443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.10  E-value=0.007  Score=47.19  Aligned_cols=22  Identities=27%  Similarity=0.167  Sum_probs=18.2

Q ss_pred             ccCCeEEEEccCccHHHHHHhc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ....+|||||||+|.++..|.+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~   90 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRR   90 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCHHHHHHHH
Confidence            3567999999999998887754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.10  E-value=0.00071  Score=51.74  Aligned_cols=44  Identities=25%  Similarity=0.221  Sum_probs=27.3

Q ss_pred             cCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        66 ~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .|+....++..+++.+.+.+..  ....+|||||||+|.++..|.+
T Consensus        34 ~y~~~~~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~   77 (279)
T 3ccf_A           34 LYQDKHSFVWQYGEDLLQLLNP--QPGEFILDLGCGTGQLTEKIAQ   77 (279)
T ss_dssp             -------CCSSSCCHHHHHHCC--CTTCEEEEETCTTSHHHHHHHH
T ss_pred             HHhhcchHHHHHHHHHHHHhCC--CCCCEEEEecCCCCHHHHHHHh
Confidence            3444444445566667766642  3467999999999999988865

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=96.09  E-value=0.016  Score=41.47  Aligned_cols=57  Identities=23%  Similarity=0.232  Sum_probs=36.4

Q ss_pred             cCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           50 IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        50 IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .|+.... ..++.....  ....+...+++.+.+.+..   ...+|||+|||+|.++..|.+.
T Consensus         8 ~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~   64 (219)
T 3dlc_A            8 KFDKKGA-KNMDEISKT--LFAPIYPIIAENIINRFGI---TAGTCIDIGSGPGALSIALAKQ   64 (219)
T ss_dssp             TTSHHHH-HHHHHHHHT--TTTTHHHHHHHHHHHHHCC---CEEEEEEETCTTSHHHHHHHHH
T ss_pred             hhhhcch-hhHHHHHHH--hhccccHHHHHHHHHhcCC---CCCEEEEECCCCCHHHHHHHHc
Confidence            4666543 334444432  2233466777777776642   3349999999999999888654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.07  E-value=0.0044  Score=43.35  Aligned_cols=40  Identities=15%  Similarity=0.065  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+-.+++...+.+.+..  ....+|||+|||+|.++..+...
T Consensus         7 ~~t~~~~~~~~~~~~~~--~~~~~vldiG~G~G~~~~~l~~~   46 (178)
T 3hm2_A            7 QLTKQHVRALAISALAP--KPHETLWDIGGGSGSIAIEWLRS   46 (178)
T ss_dssp             CSHHHHHHHHHHHHHCC--CTTEEEEEESTTTTHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHhcc--cCCCeEEEeCCCCCHHHHHHHHH
Confidence            34566777777777643  24569999999999999887654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=96.05  E-value=0.0032  Score=47.85  Aligned_cols=25  Identities=16%  Similarity=-0.133  Sum_probs=20.1

Q ss_pred             HhhhccCCeEEEEccCccHHHHHHh
Q 032981           86 EDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        86 ~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ..+.....+|||||||+|.++..|.
T Consensus        19 ~~~~~~~~~vLDiGCG~G~~~~~la   43 (225)
T 3p2e_A           19 EIIGQFDRVHIDLGTGDGRNIYKLA   43 (225)
T ss_dssp             HHHTTCSEEEEEETCTTSHHHHHHH
T ss_pred             HHhCCCCCEEEEEeccCcHHHHHHH
Confidence            3444566799999999999998886

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.05  E-value=0.0035  Score=45.71  Aligned_cols=29  Identities=10%  Similarity=0.008  Sum_probs=21.1

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      +.+.+... ....+|||||||+|.++..+.
T Consensus        58 ~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~   86 (215)
T 2zfu_A           58 IARDLRQR-PASLVVADFGCGDCRLASSIR   86 (215)
T ss_dssp             HHHHHHTS-CTTSCEEEETCTTCHHHHHCC
T ss_pred             HHHHHhcc-CCCCeEEEECCcCCHHHHHhh
Confidence            44444433 346789999999999988773

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.04  E-value=0.0044  Score=43.70  Aligned_cols=36  Identities=17%  Similarity=0.021  Sum_probs=23.7

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.+.+.+... ....+|||+|||+|.++..+...
T Consensus        30 ~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~   65 (187)
T 2fhp_A           30 KVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSR   65 (187)
T ss_dssp             HHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHc
Confidence            3444455444332 24679999999999998866443

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.03  E-value=0.0085  Score=43.33  Aligned_cols=37  Identities=8%  Similarity=-0.175  Sum_probs=24.8

Q ss_pred             HHHHHHHhhhHhh-hccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~I-kR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ++++.|.+.+... .....+|||+|||+|.++..+...
T Consensus        35 ~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~   72 (200)
T 1ne2_A           35 STAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL   72 (200)
T ss_dssp             HHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc
Confidence            3445555444332 124679999999999999888654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.01  E-value=0.0033  Score=45.32  Aligned_cols=21  Identities=14%  Similarity=-0.056  Sum_probs=18.6

Q ss_pred             CCeEEEEccCccHHHHHHhcc
Q 032981           92 FPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+|||+|||+|.++..|...
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~   62 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL   62 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT
T ss_pred             CCeEEEecCCCCHHHHHHHhc
Confidence            678999999999999988654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=95.98  E-value=0.0053  Score=44.48  Aligned_cols=19  Identities=21%  Similarity=0.044  Sum_probs=17.3

Q ss_pred             cCCeEEEEccCccHHHHHH
Q 032981           91 TFPTALCLGGSLEAVRRLL  109 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L  109 (129)
                      ...+|||+|||+|.++..|
T Consensus        36 ~~~~vLdiG~G~G~~~~~l   54 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL   54 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC
T ss_pred             CCCeEEEECCCCCHhHHhC
Confidence            6779999999999998887

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=95.98  E-value=0.0092  Score=43.15  Aligned_cols=37  Identities=14%  Similarity=-0.165  Sum_probs=25.0

Q ss_pred             HHHHHHHhhhHhh-hccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~I-kR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+++.+.+.+... .....+|||+|||+|.++..+...
T Consensus        33 ~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~   70 (207)
T 1wy7_A           33 NAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL   70 (207)
T ss_dssp             HHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc
Confidence            4455555444332 124568999999999999888655

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=95.96  E-value=0.00053  Score=52.30  Aligned_cols=45  Identities=16%  Similarity=0.063  Sum_probs=31.7

Q ss_pred             cCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        66 ~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.-.....+.+.+.+.+..  ....+|||+|||+|.++..|.+.
T Consensus         6 ~~gq~fl~~~~~~~~i~~~~~~--~~~~~VLDiG~G~G~~~~~l~~~   50 (245)
T 1yub_A            6 KYSQNFLTSEKVLNQIIKQLNL--KETDTVYEIGTGKGHLTTKLAKI   50 (245)
T ss_dssp             CSCCCBCCCTTTHHHHHHHCCC--CSSEEEEECSCCCSSCSHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHhcCC--CCCCEEEEEeCCCCHHHHHHHHh
Confidence            3455444456677777776643  24568999999999998888654

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=95.94  E-value=0.0021  Score=51.21  Aligned_cols=48  Identities=15%  Similarity=0.066  Sum_probs=32.3

Q ss_pred             hhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           63 AAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        63 AA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +...+.++-.....+++.+.+.+..  ....+|||||||+|.++..|.+.
T Consensus        16 ~~k~~GQ~fL~d~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~   63 (279)
T 3uzu_A           16 ARKRFGQNFLVDHGVIDAIVAAIRP--ERGERMVEIGPGLGALTGPVIAR   63 (279)
T ss_dssp             --CCCSCCEECCHHHHHHHHHHHCC--CTTCEEEEECCTTSTTHHHHHHH
T ss_pred             ccccCCccccCCHHHHHHHHHhcCC--CCcCEEEEEccccHHHHHHHHHh
Confidence            3344555433345677777776643  24678999999999999988654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.94  E-value=0.008  Score=41.81  Aligned_cols=37  Identities=5%  Similarity=0.003  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+++.+.+.+.+..  ....++||+|||+|.++..+.+
T Consensus        19 ~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~   55 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNL--NKDDVVVDVGCGSGGMTVEIAK   55 (183)
T ss_dssp             CCHHHHHHHHHHHCC--CTTCEEEEESCCCSHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCC--CCCCEEEEeCCCCCHHHHHHHh
Confidence            344556666666532  2466999999999999888865

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=95.92  E-value=0.0077  Score=46.23  Aligned_cols=23  Identities=17%  Similarity=0.102  Sum_probs=19.0

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||||.++..|.+.+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g   59 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNG   59 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT
T ss_pred             CCCEEEEEccCCCHHHHHHHhcC
Confidence            34589999999999998886654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=95.92  E-value=0.0046  Score=44.92  Aligned_cols=39  Identities=13%  Similarity=-0.000  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+++...+.+++..  ....+|||+|||+|.++..+.+.+
T Consensus        24 ~~~~i~~~~l~~l~~--~~~~~vLDiG~G~G~~~~~la~~~   62 (204)
T 3e05_A           24 TKQEVRAVTLSKLRL--QDDLVMWDIGAGSASVSIEASNLM   62 (204)
T ss_dssp             CCHHHHHHHHHHTTC--CTTCEEEEETCTTCHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHcCC--CCCCEEEEECCCCCHHHHHHHHHC
Confidence            455676777776643  246799999999999988886554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.92  E-value=0.0062  Score=45.82  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      -.++.+.+.+.+++..  ....+|||||||+|.++..|.+
T Consensus        44 ~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~   81 (273)
T 3bus_A           44 DATDRLTDEMIALLDV--RSGDRVLDVGCGIGKPAVRLAT   81 (273)
T ss_dssp             HHHHHHHHHHHHHSCC--CTTCEEEEESCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC--CCCCEEEEeCCCCCHHHHHHHH
Confidence            3455566666665532  2467999999999999888854

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=95.90  E-value=0.0053  Score=48.29  Aligned_cols=23  Identities=13%  Similarity=-0.044  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||||.++..+.+.+
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~~   96 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASRP   96 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTST
T ss_pred             CCCEEEEeCcCCCHHHHHHHHcC
Confidence            45689999999999999886653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=95.90  E-value=0.01  Score=43.88  Aligned_cols=22  Identities=14%  Similarity=0.110  Sum_probs=19.1

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..+.+.
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~   46 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL   46 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT
T ss_pred             CCCEEEEEeecCCHHHHHHHHc
Confidence            4679999999999999998654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.89  E-value=0.014  Score=43.42  Aligned_cols=61  Identities=8%  Similarity=-0.031  Sum_probs=39.3

Q ss_pred             cCcCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           48 VSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        48 ~~IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...||...+....+........    ..+..+.+.+.+..++ ...+|||||||+|.++..|.+.+
T Consensus         8 ~~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~-~~~~vLDiG~G~G~~~~~l~~~~   68 (257)
T 3f4k_A            8 IHDFDFSFICNYFKLLKRQGPG----SPEATRKAVSFINELT-DDAKIADIGCGTGGQTLFLADYV   68 (257)
T ss_dssp             GGGSCHHHHHHHHTTSSCSSSC----CHHHHHHHHTTSCCCC-TTCEEEEETCTTSHHHHHHHHHC
T ss_pred             hhhhhHHHHHHHHcCccccCCC----CHHHHHHHHHHHhcCC-CCCeEEEeCCCCCHHHHHHHHhC
Confidence            4468888777666553322122    2344555666655443 35699999999999998886553

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=95.89  E-value=0.0074  Score=42.91  Aligned_cols=22  Identities=9%  Similarity=-0.130  Sum_probs=19.1

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..|.+.
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~   43 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL   43 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh
Confidence            4678999999999999988664

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=95.88  E-value=0.0057  Score=45.49  Aligned_cols=39  Identities=18%  Similarity=0.065  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....+..+.+.+.+. + ....+|||||||+|.++..|.+.
T Consensus        19 ~~~~~~~~~l~~~~~-~-~~~~~VLDiGcG~G~~~~~la~~   57 (256)
T 1nkv_A           19 PFTEEKYATLGRVLR-M-KPGTRILDLGSGSGEMLCTWARD   57 (256)
T ss_dssp             SCCHHHHHHHHHHTC-C-CTTCEEEEETCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcC-C-CCCCEEEEECCCCCHHHHHHHHh
Confidence            334455666766654 2 34679999999999998887543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.88  E-value=0.0092  Score=43.30  Aligned_cols=57  Identities=14%  Similarity=0.015  Sum_probs=32.4

Q ss_pred             cCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           50 IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        50 IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..|... ...++..+..|+....- .....++.+.   ++ ...+|||+|||+|.++..|.+.
T Consensus         8 ~~~~~~-~~~~~~~~~~y~~~~~~-~~~~~~~~~~---~~-~~~~vLDiGcG~G~~~~~l~~~   64 (211)
T 3e23_A            8 AFDDDT-LRFYRGNATAYAERQPR-SATLTKFLGE---LP-AGAKILELGCGAGYQAEAMLAA   64 (211)
T ss_dssp             CSCHHH-HHHHHHSHHHHTTCCCC-CHHHHHHHTT---SC-TTCEEEESSCTTSHHHHHHHHT
T ss_pred             cccHHH-HHHHHHHHHHHhhccch-hHHHHHHHHh---cC-CCCcEEEECCCCCHHHHHHHHc
Confidence            455444 44455555444432111 2223333332   22 4679999999999999988654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=95.88  E-value=0.0032  Score=49.97  Aligned_cols=38  Identities=11%  Similarity=0.038  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+.+.+.+.+..  ....+|||+|||+|.++..|.+.+
T Consensus        27 ~~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~La~~~   64 (299)
T 2h1r_A           27 NPGILDKIIYAAKI--KSSDIVLEIGCGTGNLTVKLLPLA   64 (299)
T ss_dssp             CHHHHHHHHHHHCC--CTTCEEEEECCTTSTTHHHHTTTS
T ss_pred             CHHHHHHHHHhcCC--CCcCEEEEEcCcCcHHHHHHHhcC
Confidence            56778888876643  246789999999999999997653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=95.88  E-value=0.0054  Score=48.59  Aligned_cols=23  Identities=13%  Similarity=-0.058  Sum_probs=19.4

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||||.++..+.+.+
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~~  104 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQP  104 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTST
T ss_pred             CCCEEEEeccCCCHHHHHHHHcC
Confidence            45689999999999999887653

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=95.87  E-value=0.0054  Score=49.17  Aligned_cols=25  Identities=12%  Similarity=-0.063  Sum_probs=20.3

Q ss_pred             cCCeEEEEccCccHHHHHHhccCCc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRVVL  115 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g~v  115 (129)
                      ...+|||||||+|.++..|.+.+.|
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~~~V  106 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGLKNV  106 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTSTTE
T ss_pred             CCCEEEEEcCCCCHHHHHHHhcCCE
Confidence            3469999999999999998776433

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=95.86  E-value=0.0089  Score=43.39  Aligned_cols=45  Identities=16%  Similarity=0.037  Sum_probs=29.3

Q ss_pred             CCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        67 y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +....|-++...+-+...+.  .....+|||+|||+|.++..|.+.+
T Consensus        29 ~~~~~~~~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~   73 (216)
T 3ofk_A           29 LDDNPFERERHTQLLRLSLS--SGAVSNGLEIGCAAGAFTEKLAPHC   73 (216)
T ss_dssp             TTTCHHHHHHHHHHHHHHTT--TSSEEEEEEECCTTSHHHHHHGGGE
T ss_pred             cccCHhHHHHHHHHHHHHcc--cCCCCcEEEEcCCCCHHHHHHHHcC
Confidence            44455555555554443332  2245689999999999999886653

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.78  E-value=0.0074  Score=43.21  Aligned_cols=24  Identities=21%  Similarity=-0.013  Sum_probs=20.0

Q ss_pred             ccCCeEEEEccCccHHHHHHhccC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ....+|||+|||+|.++..+.+.+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~   64 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGG   64 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTT
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcC
Confidence            457799999999999998886554

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=95.75  E-value=0.0058  Score=48.03  Aligned_cols=38  Identities=11%  Similarity=0.131  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+++.+.+.+..  ....+|||||||+|.++..|.+.+
T Consensus        13 d~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~L~~~~   50 (285)
T 1zq9_A           13 NPLIINSIIDKAAL--RPTDVVLEVGPGTGNMTVKLLEKA   50 (285)
T ss_dssp             CHHHHHHHHHHTCC--CTTCEEEEECCTTSTTHHHHHHHS
T ss_pred             CHHHHHHHHHhcCC--CCCCEEEEEcCcccHHHHHHHhhC
Confidence            56677888877643  246789999999999999886543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=95.74  E-value=0.0076  Score=44.72  Aligned_cols=24  Identities=4%  Similarity=-0.086  Sum_probs=19.6

Q ss_pred             ccCCeEEEEccCccHHHHHHhccC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ....+|||||||+|.++..|.+.+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~   78 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFF   78 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhC
Confidence            345689999999999999886544

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=95.74  E-value=0.0097  Score=42.44  Aligned_cols=22  Identities=14%  Similarity=-0.023  Sum_probs=18.6

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..|.+.
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~   43 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQK   43 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHH
Confidence            4679999999999999888654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.72  E-value=0.0091  Score=44.81  Aligned_cols=41  Identities=12%  Similarity=-0.104  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.+..-.+.|.+.+..  ..+.+|||||||+|.++..|.+.+
T Consensus        19 ~~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~   59 (260)
T 1vl5_A           19 IHAKGSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFV   59 (260)
T ss_dssp             ----CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGS
T ss_pred             cccCHHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhC
Confidence            34444455666665542  367899999999999999887653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=95.70  E-value=0.0098  Score=46.48  Aligned_cols=53  Identities=11%  Similarity=-0.021  Sum_probs=33.4

Q ss_pred             HHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCc---cHHHHHHh
Q 032981           57 RKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSL---EAVRRLLR  110 (129)
Q Consensus        57 r~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgt---G~l~~~L~  110 (129)
                      ..+..++...+......++...+++.+.|.. ......+||||||+   |.++..+.
T Consensus        44 ~~~~~~~~p~~~~~a~~~~~~~~~~~~~l~~-~~~~~~vLDlGcG~pt~G~~~~~~~   99 (274)
T 2qe6_A           44 ADYACKHIPGLKESAIENRKVLVRGVRFLAG-EAGISQFLDLGSGLPTVQNTHEVAQ   99 (274)
T ss_dssp             HHHHHHHSTTHHHHHHHHHHHHHHHHHHHHT-TTCCCEEEEETCCSCCSSCHHHHHH
T ss_pred             HHHHHHhcchhHHHHHHHhHHHHHHHHHHhh-ccCCCEEEEECCCCCCCChHHHHHH
Confidence            3445555443444455566666666666542 22457999999999   98876664

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=95.70  E-value=0.011  Score=50.88  Aligned_cols=23  Identities=17%  Similarity=-0.013  Sum_probs=20.0

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+-+|||||||+|.++..|.+.|
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~g   88 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKG   88 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTT
T ss_pred             CCCeEEEECCCCcHHHHHHHhCC
Confidence            46789999999999999997665

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=95.69  E-value=0.0066  Score=43.63  Aligned_cols=31  Identities=13%  Similarity=0.014  Sum_probs=21.8

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+++..++ ...+|||||||+|.++..|.+.
T Consensus        13 ~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~   43 (201)
T 2plw_A           13 LDNKYLFLK-KNKIILDIGCYPGSWCQVILER   43 (201)
T ss_dssp             HHHHHCCCC-TTEEEEEESCTTCHHHHHHHHH
T ss_pred             HHHHcCCCC-CCCEEEEeCCCCCHHHHHHHHH
Confidence            444443332 4568999999999999888643

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=95.68  E-value=0.0091  Score=42.62  Aligned_cols=36  Identities=8%  Similarity=0.039  Sum_probs=24.6

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.+.+.+.. .....+|||+|||+|.++..+.+.
T Consensus        16 ~~~~~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~   51 (215)
T 4dzr_A           16 VLVEEAIRFLKR-MPSGTRVIDVGTGSGCIAVSIALA   51 (215)
T ss_dssp             HHHHHHHHHHTT-CCTTEEEEEEESSBCHHHHHHHHH
T ss_pred             HHHHHHHHHhhh-cCCCCEEEEecCCHhHHHHHHHHh
Confidence            444455544432 145679999999999998887654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.65  E-value=0.014  Score=40.68  Aligned_cols=40  Identities=23%  Similarity=0.100  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +..+++.+.+.+.+..  ....+|||+|||+|.++..+.+.+
T Consensus        16 ~~~~~~~~~~~~~~~~--~~~~~vldiG~G~G~~~~~l~~~~   55 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEP--GKNDVAVDVGCGTGGVTLELAGRV   55 (192)
T ss_dssp             CCCHHHHHHHHHHHCC--CTTCEEEEESCTTSHHHHHHHTTS
T ss_pred             CChHHHHHHHHHhcCC--CCCCEEEEECCCCCHHHHHHHHhc
Confidence            3445566666665542  346799999999999988886543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=95.64  E-value=0.0071  Score=42.71  Aligned_cols=36  Identities=11%  Similarity=-0.056  Sum_probs=23.9

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.+.+.+..+ ....+|||+|||+|.++..+...
T Consensus        17 ~~~~~~~~~l~~~-~~~~~vLDlGcG~G~~~~~l~~~   52 (177)
T 2esr_A           17 KVRGAIFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSR   52 (177)
T ss_dssp             -CHHHHHHHHCSC-CCSCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh-cCCCeEEEeCCCCCHHHHHHHHc
Confidence            3444555444422 24679999999999998877654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.64  E-value=0.0076  Score=42.22  Aligned_cols=35  Identities=14%  Similarity=0.063  Sum_probs=25.7

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+++.|.+.+.. + ...+|||+|||+|.++..+.+.
T Consensus        39 ~~~~~l~~~~~~-~-~~~~vLdiG~G~G~~~~~~~~~   73 (194)
T 1dus_A           39 KGTKILVENVVV-D-KDDDILDLGCGYGVIGIALADE   73 (194)
T ss_dssp             HHHHHHHHHCCC-C-TTCEEEEETCTTSHHHHHHGGG
T ss_pred             hHHHHHHHHccc-C-CCCeEEEeCCCCCHHHHHHHHc
Confidence            456666665532 2 5679999999999998888654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.58  E-value=0.002  Score=48.36  Aligned_cols=36  Identities=17%  Similarity=0.136  Sum_probs=24.2

Q ss_pred             HHHHHHHhhhHhhh-ccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~Ik-R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+..+.+.+. +. ....+|||+|||+|..+..|.+.
T Consensus        42 ~l~~~~~~~l~-~~~~~g~~VLDlGcGtG~~~~~la~~   78 (210)
T 1nt2_A           42 KLAAMILKGHR-LKLRGDERVLYLGAASGTTVSHLADI   78 (210)
T ss_dssp             HHHHHHHTSCC-CCCCSSCEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHHhhcc-cCCCCCCEEEEECCcCCHHHHHHHHH
Confidence            44455555443 32 24568999999999998877543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.57  E-value=0.012  Score=44.46  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=27.1

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+..+.+.+.+..+ ....+|||||||+|.++..+.+.+
T Consensus        31 ~~~~~~~l~~l~~~-~~~~~vLDiGcG~G~~~~~la~~~   68 (267)
T 3kkz_A           31 PEVTLKALSFIDNL-TEKSLIADIGCGTGGQTMVLAGHV   68 (267)
T ss_dssp             HHHHHHHHTTCCCC-CTTCEEEEETCTTCHHHHHHHTTC
T ss_pred             HHHHHHHHHhcccC-CCCCEEEEeCCCCCHHHHHHHhcc
Confidence            34455566555532 356799999999999999887653

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=95.54  E-value=0.017  Score=39.38  Aligned_cols=31  Identities=13%  Similarity=-0.001  Sum_probs=21.6

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+++..+ ....+|||+|||+|.++..+.+.
T Consensus        13 ~~~~~~~~-~~~~~vLd~G~G~G~~~~~l~~~   43 (180)
T 1ej0_A           13 IQQSDKLF-KPGMTVVDLGAAPGGWSQYVVTQ   43 (180)
T ss_dssp             HHHHHCCC-CTTCEEEEESCTTCHHHHHHHHH
T ss_pred             HHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHH
Confidence            44444332 34669999999999998887543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.54  E-value=0.013  Score=43.46  Aligned_cols=24  Identities=8%  Similarity=-0.071  Sum_probs=20.2

Q ss_pred             ccCCeEEEEccCccHHHHHHhccC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ....+|||+|||+|.++..|.+.+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~   70 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQA   70 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC
Confidence            457899999999999999887653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=95.51  E-value=0.012  Score=43.58  Aligned_cols=36  Identities=17%  Similarity=0.069  Sum_probs=24.8

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+...+.+.|........+|||+|||+|.++..|.+
T Consensus        69 ~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~  104 (227)
T 1r18_A           69 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYR  104 (227)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHH
Confidence            444455555542234567999999999999887754

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.51  E-value=0.014  Score=42.43  Aligned_cols=22  Identities=18%  Similarity=0.129  Sum_probs=19.1

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..|.+.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~   66 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA   66 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC
Confidence            5679999999999999988654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=95.51  E-value=0.0095  Score=43.86  Aligned_cols=35  Identities=14%  Similarity=-0.075  Sum_probs=22.4

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+.|.+.+... ....+|||+|||+|.++..+..
T Consensus        39 ~~~~~l~~~l~~~-~~~~~vLDlGcGtG~~~~~~~~   73 (201)
T 2ift_A           39 RVKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALS   73 (201)
T ss_dssp             HHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-cCCCeEEEcCCccCHHHHHHHH
Confidence            3344444444332 1457899999999999886543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=95.51  E-value=0.0096  Score=46.41  Aligned_cols=39  Identities=23%  Similarity=0.150  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +++...+.+.+.|..+ ....+|||+|||+|.++..|.+.
T Consensus       100 ~~~~~~~~l~~~l~~~-~~~~~vLDiGcG~G~~~~~la~~  138 (312)
T 3vc1_A          100 LESAQAEFLMDHLGQA-GPDDTLVDAGCGRGGSMVMAHRR  138 (312)
T ss_dssp             HHHHHHHHHHTTSCCC-CTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-CCCCEEEEecCCCCHHHHHHHHH
Confidence            3344445566655433 24569999999999999888654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=95.50  E-value=0.015  Score=44.27  Aligned_cols=35  Identities=17%  Similarity=-0.011  Sum_probs=25.9

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+++..|.+.+...  .+.+|||||||+|..+..|.+
T Consensus        67 p~~~~~l~~~l~~~--~~~~VLDiG~GtG~~t~~la~  101 (236)
T 2bm8_A           67 PDTQAVYHDMLWEL--RPRTIVELGVYNGGSLAWFRD  101 (236)
T ss_dssp             HHHHHHHHHHHHHH--CCSEEEEECCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCEEEEEeCCCCHHHHHHHH
Confidence            55566666555543  468999999999999888754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=95.50  E-value=0.016  Score=43.00  Aligned_cols=38  Identities=16%  Similarity=0.147  Sum_probs=25.2

Q ss_pred             HHHHHHHhhhHhhh---ccCCeEEEEccCccHHHHHHhccC
Q 032981           76 AVAENLLDRLEDCR---KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        76 eVAerL~DRL~~Ik---R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+.+.+.+....   ....+|||||||+|.++..|.+.+
T Consensus        61 ~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~  101 (241)
T 2ex4_A           61 NSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL  101 (241)
T ss_dssp             HHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT
T ss_pred             HhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc
Confidence            34455555554322   136799999999999999886543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=95.49  E-value=0.011  Score=43.70  Aligned_cols=22  Identities=14%  Similarity=-0.043  Sum_probs=18.6

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..|.+.
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~   87 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP   87 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC
Confidence            4569999999999999988654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=95.45  E-value=0.016  Score=42.47  Aligned_cols=22  Identities=14%  Similarity=0.018  Sum_probs=18.5

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..|.+.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~   54 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH   54 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT
T ss_pred             CCCeEEEecCCCCHHHHHHhhC
Confidence            3579999999999999888654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=95.45  E-value=0.003  Score=49.25  Aligned_cols=44  Identities=18%  Similarity=0.173  Sum_probs=33.5

Q ss_pred             CCCChHHHHHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHh
Q 032981           67 TRPNDSFVDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        67 y~~~~fLq~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~  110 (129)
                      |+..+-.+...+..|+..|..+.- ...+|||+|||||.++..+.
T Consensus        51 yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la   95 (232)
T 3id6_C           51 YREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVS   95 (232)
T ss_dssp             EEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHH
T ss_pred             hhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHH
Confidence            555555677888889888864432 45799999999999887764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.41  E-value=0.015  Score=42.74  Aligned_cols=36  Identities=17%  Similarity=0.086  Sum_probs=24.1

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +...+.+.|..-.....+|||||||+|.++..|.+.
T Consensus        66 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~  101 (227)
T 2pbf_A           66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIK  101 (227)
T ss_dssp             HHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHH
Confidence            334455544422234679999999999998887653

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=95.40  E-value=0.016  Score=43.63  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=24.1

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +..++|.+.+..  ....+|||||||+|.++..+.+.
T Consensus        30 ~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~   64 (275)
T 3bkx_A           30 AHRLAIAEAWQV--KPGEKILEIGCGQGDLSAVLADQ   64 (275)
T ss_dssp             HHHHHHHHHHTC--CTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHcCC--CCCCEEEEeCCCCCHHHHHHHHH
Confidence            444455554432  24679999999999998887654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=95.40  E-value=0.02  Score=43.73  Aligned_cols=39  Identities=21%  Similarity=0.144  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhhhH---hhhccCCeEEEEccCccHHHHHHhcc
Q 032981           73 FVDAVAENLLDRLE---DCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        73 Lq~eVAerL~DRL~---~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+..+.+.+.+.   .+ ....+|||+|||+|.++..|.+.
T Consensus        62 ~~~~~~~~l~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~  103 (297)
T 2o57_A           62 ASLRTDEWLASELAMTGVL-QRQAKGLDLGAGYGGAARFLVRK  103 (297)
T ss_dssp             HHHHHHHHHHHHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCC-CCCCEEEEeCCCCCHHHHHHHHH
Confidence            34455566666662   22 34679999999999998888653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=95.39  E-value=0.0065  Score=48.93  Aligned_cols=45  Identities=7%  Similarity=-0.104  Sum_probs=29.2

Q ss_pred             cCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        66 ~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.-.....+.+++.+.+..  ....+|||||||+|.++..|.+.
T Consensus        27 ~~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~   71 (295)
T 3gru_A           27 KLGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKN   71 (295)
T ss_dssp             ---CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             ccCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhc
Confidence            3444323334567777766543  24568999999999999998654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=95.36  E-value=0.013  Score=43.41  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=24.7

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+..+.+.+.+.  .....+|||||||+|.++..|...
T Consensus        79 ~~~~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~  114 (254)
T 1xtp_A           79 IEGSRNFIASLP--GHGTSRALDCGAGIGRITKNLLTK  114 (254)
T ss_dssp             HHHHHHHHHTST--TCCCSEEEEETCTTTHHHHHTHHH
T ss_pred             HHHHHHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHh
Confidence            334455555542  234679999999999998887544

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=95.33  E-value=0.016  Score=44.14  Aligned_cols=23  Identities=9%  Similarity=-0.113  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..|...+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~   79 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEG   79 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC
Confidence            46789999999999999886653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=95.30  E-value=0.014  Score=42.82  Aligned_cols=33  Identities=15%  Similarity=0.108  Sum_probs=23.6

Q ss_pred             HHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        79 erL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+.+.+.. .....+|||+|||+|.++..|.+.
T Consensus        33 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~   65 (234)
T 3dtn_A           33 GVSVSIASV-DTENPDILDLGAGTGLLSAFLMEK   65 (234)
T ss_dssp             HHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHh
Confidence            444444443 335689999999999999888654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=95.30  E-value=0.011  Score=46.21  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=23.7

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+++.|.+.+..  ....+|||||||+|.++. |..
T Consensus         8 ~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~-l~~   40 (252)
T 1qyr_A            8 FVIDSIVSAINP--QKGQAMVEIGPGLAALTE-PVG   40 (252)
T ss_dssp             HHHHHHHHHHCC--CTTCCEEEECCTTTTTHH-HHH
T ss_pred             HHHHHHHHhcCC--CCcCEEEEECCCCcHHHH-hhh
Confidence            455666655532  245689999999999999 854

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.30  E-value=0.013  Score=47.45  Aligned_cols=36  Identities=14%  Similarity=0.086  Sum_probs=24.7

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..++.+.+++..  ....+|||||||+|.++..|.+.+
T Consensus        94 ~~~~~l~~~~~~--~~~~~VLDiGcG~G~~~~~l~~~g  129 (416)
T 4e2x_A           94 MLARDFLATELT--GPDPFIVEIGCNDGIMLRTIQEAG  129 (416)
T ss_dssp             HHHHHHHHTTTC--SSSCEEEEETCTTTTTHHHHHHTT
T ss_pred             HHHHHHHHHhCC--CCCCEEEEecCCCCHHHHHHHHcC
Confidence            344445544431  245699999999999999887653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=95.29  E-value=0.017  Score=43.91  Aligned_cols=35  Identities=20%  Similarity=-0.053  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      +....+.+.+.+..  ....+|||||||+|.++..+.
T Consensus        49 ~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~   83 (287)
T 1kpg_A           49 QIAKIDLALGKLGL--QPGMTLLDVGCGWGATMMRAV   83 (287)
T ss_dssp             HHHHHHHHHTTTTC--CTTCEEEEETCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHcCC--CCcCEEEEECCcccHHHHHHH
Confidence            34455556655532  245699999999999888775

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.29  E-value=0.016  Score=44.20  Aligned_cols=32  Identities=16%  Similarity=-0.040  Sum_probs=23.5

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.+.+...  ...+|||+|||+|.++..|.+.+
T Consensus       111 ~~~~~~~~~--~~~~vLD~GcG~G~~~~~l~~~g  142 (286)
T 3m70_A          111 DVVDAAKII--SPCKVLDLGCGQGRNSLYLSLLG  142 (286)
T ss_dssp             HHHHHHHHS--CSCEEEEESCTTCHHHHHHHHTT
T ss_pred             HHHHHhhcc--CCCcEEEECCCCCHHHHHHHHCC
Confidence            344444443  57799999999999999886653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=95.29  E-value=0.016  Score=44.64  Aligned_cols=22  Identities=5%  Similarity=-0.108  Sum_probs=19.0

Q ss_pred             ccCCeEEEEccCccHHHHHHhc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ....+|||||||+|.++..|.+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~   56 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQ   56 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHH
Confidence            3678999999999999988873

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.27  E-value=0.023  Score=42.10  Aligned_cols=23  Identities=17%  Similarity=-0.044  Sum_probs=19.2

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||+|||+|.++..|.+.+
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~   63 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERG   63 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCC
Confidence            45799999999999998886543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=95.26  E-value=0.0093  Score=43.59  Aligned_cols=22  Identities=9%  Similarity=-0.130  Sum_probs=18.7

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..|.+.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~   48 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQ   48 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHH
Confidence            4668999999999999888654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.26  E-value=0.018  Score=42.32  Aligned_cols=38  Identities=16%  Similarity=0.097  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....+.+.+.+.+..  ....+|||+|||+|.++..|...
T Consensus        54 ~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~   91 (231)
T 1vbf_A           54 TALNLGIFMLDELDL--HKGQKVLEIGTGIGYYTALIAEI   91 (231)
T ss_dssp             CCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCC--CCCCEEEEEcCCCCHHHHHHHHH
Confidence            344556666665532  34679999999999999888654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=95.26  E-value=0.01  Score=43.73  Aligned_cols=23  Identities=13%  Similarity=-0.116  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||+|||+|..+..|.+.|
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g   44 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQG   44 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCC
Confidence            46789999999999999886654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.26  E-value=0.017  Score=41.81  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +..+...+.+.+..  ....+|||+|||+|.++..|.+.
T Consensus        62 ~~~~~~~~~~~l~~--~~~~~vLdiG~G~G~~~~~la~~   98 (210)
T 3lbf_A           62 QPYMVARMTELLEL--TPQSRVLEIGTGSGYQTAILAHL   98 (210)
T ss_dssp             CHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCC--CCCCEEEEEcCCCCHHHHHHHHh
Confidence            34555666665533  35679999999999999888654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=95.25  E-value=0.011  Score=43.70  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=26.1

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .++.+.+.+.+..  ....+|||+|||+|.++..|.+.
T Consensus        41 ~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~   76 (266)
T 3ujc_A           41 LEATKKILSDIEL--NENSKVLDIGSGLGGGCMYINEK   76 (266)
T ss_dssp             HHHHHHHTTTCCC--CTTCEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC--CCCCEEEEECCCCCHHHHHHHHH
Confidence            3456667666632  24669999999999998888654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.21  E-value=0.018  Score=42.65  Aligned_cols=37  Identities=14%  Similarity=-0.018  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+++...+.+.+..  ....+|||+|||+|.++..+.+.
T Consensus        40 ~~~~~~~~l~~l~~--~~~~~vLDlGcG~G~~~~~la~~   76 (204)
T 3njr_A           40 KSPMRALTLAALAP--RRGELLWDIGGGSGSVSVEWCLA   76 (204)
T ss_dssp             CHHHHHHHHHHHCC--CTTCEEEEETCTTCHHHHHHHHT
T ss_pred             cHHHHHHHHHhcCC--CCCCEEEEecCCCCHHHHHHHHc
Confidence            34555556665543  24679999999999998877654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=95.19  E-value=0.019  Score=42.20  Aligned_cols=35  Identities=17%  Similarity=-0.019  Sum_probs=22.5

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+.+.+.+... ....+|||+|||+|.++-.+..
T Consensus        40 ~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~   74 (202)
T 2fpo_A           40 RVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALS   74 (202)
T ss_dssp             HHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHh
Confidence            3344444444331 2457899999999999886543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.17  E-value=0.018  Score=42.22  Aligned_cols=34  Identities=18%  Similarity=0.048  Sum_probs=23.4

Q ss_pred             HHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        79 erL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+.+........+|||+|||+|..+..|.+.
T Consensus        65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~   98 (226)
T 1i1n_A           65 AYALELLFDQLHEGAKALDVGSGSGILTACFARM   98 (226)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHH
Confidence            3455544422345679999999999998877543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=95.16  E-value=0.021  Score=44.55  Aligned_cols=22  Identities=14%  Similarity=0.173  Sum_probs=18.8

Q ss_pred             ccCCeEEEEccCccHHHHHHhc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+.+|||||||+|.++-.+..
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~   69 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWN   69 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHC
T ss_pred             CCCCeEEEecCCCCHHHHHHHh
Confidence            5588999999999999888843

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=95.13  E-value=0.02  Score=46.25  Aligned_cols=23  Identities=9%  Similarity=0.018  Sum_probs=18.8

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...++||||||||.++..|.+.+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~g  107 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNG  107 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT
T ss_pred             cccEEEecCCCccHHHHHHHhCC
Confidence            34589999999999998886543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=95.09  E-value=0.018  Score=44.13  Aligned_cols=29  Identities=10%  Similarity=0.051  Sum_probs=18.8

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHH
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVR  106 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~  106 (129)
                      .+.|.+.+..-.....+|||||||+|...
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~   86 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQ   86 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGG
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHH
Confidence            34454444332235679999999999844

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=95.06  E-value=0.022  Score=42.87  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=27.3

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ++.+.+.+++.+.+.+   .....+|||+|||+|.++..+.+.
T Consensus        67 ~~~~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~  106 (269)
T 1p91_A           67 YQPLRDAIVAQLRERL---DDKATAVLDIGCGEGYYTHAFADA  106 (269)
T ss_dssp             THHHHHHHHHHHHHHS---CTTCCEEEEETCTTSTTHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhc---CCCCCEEEEECCCCCHHHHHHHHh
Confidence            4555555555554332   135679999999999998888654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.03  E-value=0.019  Score=43.44  Aligned_cols=24  Identities=8%  Similarity=-0.014  Sum_probs=19.9

Q ss_pred             hccCCeEEEEccCccHHHHHHhcc
Q 032981           89 RKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        89 kR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .....+|||||||+|..+..+.+.
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~   81 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEA   81 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTS
T ss_pred             ccCCCeEEEECCCccHHHHHHHHh
Confidence            345679999999999999988654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.03  E-value=0.017  Score=41.51  Aligned_cols=19  Identities=21%  Similarity=0.235  Sum_probs=17.1

Q ss_pred             eEEEEccCccHHHHHHhcc
Q 032981           94 TALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        94 ~aLDLGcgtG~l~~~L~~~  112 (129)
                      +|||+|||+|.++..|.+.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~   50 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL   50 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT
T ss_pred             CEEEECCCCCHhHHHHHhC
Confidence            9999999999999888764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=94.97  E-value=0.019  Score=44.24  Aligned_cols=34  Identities=12%  Similarity=-0.012  Sum_probs=23.8

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+.+.+.+   .....+|||||||+|.++..|.+.+
T Consensus        71 ~~~~~~~~~---~~~~~~vLDlGcG~G~~~~~l~~~~  104 (299)
T 3g2m_A           71 EAREFATRT---GPVSGPVLELAAGMGRLTFPFLDLG  104 (299)
T ss_dssp             HHHHHHHHH---CCCCSCEEEETCTTTTTHHHHHTTT
T ss_pred             HHHHHHHhh---CCCCCcEEEEeccCCHHHHHHHHcC
Confidence            344444443   2345699999999999999887653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=94.95  E-value=0.019  Score=41.39  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=23.8

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.+.+.   ....+|||+|||+|.++..+.+.
T Consensus        22 ~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~   53 (230)
T 3cc8_A           22 NPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN   53 (230)
T ss_dssp             CHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT
T ss_pred             HHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc
Confidence            344554443   45779999999999999988765

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=94.93  E-value=0.03  Score=42.83  Aligned_cols=24  Identities=13%  Similarity=-0.064  Sum_probs=19.6

Q ss_pred             ccCCeEEEEccCccHHHHHHhccC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ....+|||+|||+|.++..+.+.+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g  142 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLG  142 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhC
Confidence            456799999999999988876554

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=94.91  E-value=0.022  Score=43.79  Aligned_cols=36  Identities=8%  Similarity=-0.057  Sum_probs=25.8

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+.+.+.+..+ ....+|||||||+|.++..|.+.
T Consensus         8 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~   43 (284)
T 3gu3_A            8 DYVSFLVNTVWKI-TKPVHIVDYGCGYGYLGLVLMPL   43 (284)
T ss_dssp             HHHHHHHHTTSCC-CSCCEEEEETCTTTHHHHHHTTT
T ss_pred             HHHHHHHHHHhcc-CCCCeEEEecCCCCHHHHHHHHh
Confidence            3445555555443 35789999999999999988654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=94.87  E-value=0.032  Score=41.80  Aligned_cols=37  Identities=5%  Similarity=0.019  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ++.+++.-|..-+..  ....+|||||||+|..+..|..
T Consensus        55 ~~~~~~~~l~~~~~~--~~~~~vLDiG~G~G~~~~~la~   91 (232)
T 3ntv_A           55 VDRLTLDLIKQLIRM--NNVKNILEIGTAIGYSSMQFAS   91 (232)
T ss_dssp             CCHHHHHHHHHHHHH--HTCCEEEEECCSSSHHHHHHHT
T ss_pred             cCHHHHHHHHHHHhh--cCCCEEEEEeCchhHHHHHHHH
Confidence            345555555544433  2578999999999999988865

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=94.82  E-value=0.029  Score=40.73  Aligned_cols=36  Identities=11%  Similarity=-0.037  Sum_probs=25.6

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+...+.+.+. + ....+|||+|||+|.++..|.+.
T Consensus        63 ~~~~~~~~~~~~-~-~~~~~vLdiG~G~G~~~~~l~~~   98 (215)
T 2yxe_A           63 IHMVGMMCELLD-L-KPGMKVLEIGTGCGYHAAVTAEI   98 (215)
T ss_dssp             HHHHHHHHHHTT-C-CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-C-CCCCEEEEECCCccHHHHHHHHH
Confidence            455566666553 2 34679999999999998887543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=94.81  E-value=0.03  Score=41.90  Aligned_cols=20  Identities=10%  Similarity=0.006  Sum_probs=17.0

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ...+|||+|||+|..+..|.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la   89 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIK   89 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHH
Confidence            46799999999998877775

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=94.80  E-value=0.037  Score=42.65  Aligned_cols=34  Identities=21%  Similarity=0.090  Sum_probs=23.0

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+.+++..  ....+|||||||+|.++..|.+.
T Consensus        60 ~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~la~~   93 (302)
T 3hem_A           60 KRKLALDKLNL--EPGMTLLDIGCGWGSTMRHAVAE   93 (302)
T ss_dssp             HHHHHHHTTCC--CTTCEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHHHcCC--CCcCEEEEeeccCcHHHHHHHHh
Confidence            33444444421  24569999999999998888654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=94.79  E-value=0.023  Score=40.18  Aligned_cols=22  Identities=18%  Similarity=0.009  Sum_probs=18.7

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..|.+.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~   53 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN   53 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC
Confidence            4679999999999999888654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=94.78  E-value=0.024  Score=43.96  Aligned_cols=37  Identities=27%  Similarity=0.124  Sum_probs=25.2

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+..+.+.+.+..  ....+|||||||+|.++..+.+.
T Consensus        75 ~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~la~~  111 (318)
T 2fk8_A           75 QYAKVDLNLDKLDL--KPGMTLLDIGCGWGTTMRRAVER  111 (318)
T ss_dssp             HHHHHHHHHTTSCC--CTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC--CCcCEEEEEcccchHHHHHHHHH
Confidence            34455555555532  24569999999999988877643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=94.77  E-value=0.032  Score=40.10  Aligned_cols=34  Identities=12%  Similarity=-0.045  Sum_probs=22.3

Q ss_pred             HHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981           78 AENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        78 AerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+.+.+..... ...+|||+|||+|.++..+..
T Consensus        51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~   85 (207)
T 1jsx_A           51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSI   85 (207)
T ss_dssp             HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHH
T ss_pred             HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHH
Confidence            4444444443221 356899999999998877754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=94.76  E-value=0.017  Score=44.77  Aligned_cols=23  Identities=4%  Similarity=-0.211  Sum_probs=19.7

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||+|||+|..+..|.+.|
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G   90 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRG   90 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCC
Confidence            46799999999999999887654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.71  E-value=0.018  Score=42.29  Aligned_cols=21  Identities=10%  Similarity=-0.037  Sum_probs=18.0

Q ss_pred             CCeEEEEccCccHHHHHHhcc
Q 032981           92 FPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+|||+|||+|.++..+...
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~   68 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK   68 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH
Confidence            679999999999998887653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=94.64  E-value=0.03  Score=41.74  Aligned_cols=34  Identities=12%  Similarity=0.045  Sum_probs=23.9

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..-+.+.+..  ....+|||+|||+|.++..|.+.+
T Consensus        10 ~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~   43 (239)
T 1xxl_A           10 LGLMIKTAEC--RAEHRVLDIGAGAGHTALAFSPYV   43 (239)
T ss_dssp             HHHHHHHHTC--CTTCEEEEESCTTSHHHHHHGGGS
T ss_pred             cchHHHHhCc--CCCCEEEEEccCcCHHHHHHHHhC
Confidence            3344444432  257799999999999999886653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=94.59  E-value=0.056  Score=39.48  Aligned_cols=22  Identities=14%  Similarity=-0.114  Sum_probs=18.8

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|..+..|.+.
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~   79 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARG   79 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTT
T ss_pred             CCCEEEEecCCccHHHHHHHHh
Confidence            4789999999999999888654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=94.56  E-value=0.016  Score=47.06  Aligned_cols=21  Identities=24%  Similarity=-0.005  Sum_probs=17.4

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||||||+|.++..|.+
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~  103 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASK  103 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHH
T ss_pred             CCCEEEEecCccCHHHHHHHH
Confidence            467899999999988877754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=94.55  E-value=0.016  Score=42.04  Aligned_cols=22  Identities=14%  Similarity=0.055  Sum_probs=18.9

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..+...
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~   51 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK   51 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCeEEEECCCCCHHHHHHHhC
Confidence            5679999999999999888654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.54  E-value=0.028  Score=39.30  Aligned_cols=23  Identities=13%  Similarity=0.010  Sum_probs=19.3

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....+|||+|||+|.++..+.+.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~   67 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ   67 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC
Confidence            35779999999999999888654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=94.51  E-value=0.023  Score=42.80  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=18.9

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +..++|||||||+|.++..+.+.
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~   55 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKD   55 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHH
T ss_pred             CCCCeEEEEeeeChHHHHHHHHH
Confidence            35679999999999998887543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=94.50  E-value=0.016  Score=45.19  Aligned_cols=24  Identities=17%  Similarity=-0.051  Sum_probs=19.6

Q ss_pred             cCCeEEEEccCccHHHHHHhccCC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      ...++||+|||+|+++-.|...+.
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~   38 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQ   38 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCC
Confidence            456899999999999988876553

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=94.46  E-value=0.023  Score=42.33  Aligned_cols=23  Identities=17%  Similarity=-0.064  Sum_probs=19.6

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..|.+.+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~   66 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHG   66 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHcC
Confidence            46799999999999999887654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=94.44  E-value=0.019  Score=48.83  Aligned_cols=36  Identities=11%  Similarity=-0.010  Sum_probs=26.0

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+...|.+.+..  ....+|||||||+|.++..|...
T Consensus       228 p~~v~~ml~~l~l--~~g~~VLDLGCGsG~la~~LA~~  263 (433)
T 1u2z_A          228 PNFLSDVYQQCQL--KKGDTFMDLGSGVGNCVVQAALE  263 (433)
T ss_dssp             HHHHHHHHHHTTC--CTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC--CCCCEEEEeCCCcCHHHHHHHHH
Confidence            4455667666532  24679999999999998887653

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=94.43  E-value=0.039  Score=41.06  Aligned_cols=37  Identities=14%  Similarity=0.006  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...++..+.+.+. + ....+|||+|||+|.++..|.+.
T Consensus        76 ~~~~~~~~~~~l~-~-~~~~~vLdiG~G~G~~~~~la~~  112 (235)
T 1jg1_A           76 APHMVAIMLEIAN-L-KPGMNILEVGTGSGWNAALISEI  112 (235)
T ss_dssp             CHHHHHHHHHHHT-C-CTTCCEEEECCTTSHHHHHHHHH
T ss_pred             cHHHHHHHHHhcC-C-CCCCEEEEEeCCcCHHHHHHHHH
Confidence            4455666666553 2 24568999999999998888654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=94.43  E-value=0.017  Score=45.77  Aligned_cols=32  Identities=13%  Similarity=0.058  Sum_probs=23.4

Q ss_pred             hhhHhhh---ccCCeEEEEccCccHHHHHHhccCC
Q 032981           83 DRLEDCR---KTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        83 DRL~~Ik---R~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      .||..|.   ....++||||||+|+++-.|.+.+.
T Consensus        10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~   44 (244)
T 3gnl_A           10 KRLEKVASYITKNERIADIGSDHAYLPCFAVKNQT   44 (244)
T ss_dssp             HHHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS
T ss_pred             HHHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC
Confidence            4555543   2356899999999999998876554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=94.42  E-value=0.036  Score=42.46  Aligned_cols=32  Identities=28%  Similarity=0.253  Sum_probs=22.1

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +.+.+.+.+.   ....+|||+|||+|.++..|..
T Consensus        98 l~~~~l~~~~---~~~~~vLDlG~GsG~~~~~la~  129 (276)
T 2b3t_A           98 LVEQALARLP---EQPCRILDLGTGTGAIALALAS  129 (276)
T ss_dssp             HHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHHhcc---cCCCEEEEecCCccHHHHHHHH
Confidence            3444444332   3467999999999999887753

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=94.40  E-value=0.024  Score=44.14  Aligned_cols=22  Identities=14%  Similarity=0.070  Sum_probs=18.5

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..|...
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~   67 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACK   67 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH
Confidence            3679999999999999888654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=94.39  E-value=0.027  Score=42.34  Aligned_cols=34  Identities=15%  Similarity=-0.060  Sum_probs=22.5

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ++.+.+.+.+..  ....+|||+|||+|.++-.+..
T Consensus        38 ~l~~~~l~~~~~--~~~~~vLD~gcGsG~~~~~la~   71 (250)
T 1o9g_A           38 EIFQRALARLPG--DGPVTLWDPCCGSGYLLTVLGL   71 (250)
T ss_dssp             HHHHHHHHTSSC--CSCEEEEETTCTTSHHHHHHHH
T ss_pred             HHHHHHHHhccc--CCCCeEEECCCCCCHHHHHHHH
Confidence            444555444321  2456899999999998877754

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=94.35  E-value=0.019  Score=45.54  Aligned_cols=18  Identities=11%  Similarity=-0.175  Sum_probs=13.8

Q ss_pred             CCeEEEEccCccHHHHHH
Q 032981           92 FPTALCLGGSLEAVRRLL  109 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L  109 (129)
                      ..+|||||||+|.....+
T Consensus        49 ~~~VLDlGCG~G~~l~~~   66 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKY   66 (302)
T ss_dssp             CCEEEETTCTTTTTHHHH
T ss_pred             CCeEEEEecCCcHhHHHH
Confidence            568999999999644433

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=94.33  E-value=0.033  Score=41.79  Aligned_cols=20  Identities=20%  Similarity=0.320  Sum_probs=16.2

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ...+|||+|||+|.++..|.
T Consensus        65 ~~~~vLDlG~G~G~~~~~la   84 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLG   84 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHH
Confidence            45689999999998776664

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=94.28  E-value=0.025  Score=42.05  Aligned_cols=22  Identities=9%  Similarity=0.051  Sum_probs=18.4

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.|||||||+|.++..|.+.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~   59 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQ   59 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCceEEEEecCCCHHHHHHHHH
Confidence            4678999999999998887543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=94.26  E-value=0.015  Score=43.91  Aligned_cols=22  Identities=18%  Similarity=0.098  Sum_probs=18.8

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..|.+.
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~   58 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKN   58 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHh
Confidence            4679999999999999888654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=94.25  E-value=0.028  Score=39.24  Aligned_cols=23  Identities=9%  Similarity=-0.154  Sum_probs=19.1

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||+|||+|.++..+.+.+
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~   39 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFA   39 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTE
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc
Confidence            35589999999999999887653

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=94.21  E-value=0.018  Score=44.01  Aligned_cols=35  Identities=14%  Similarity=0.019  Sum_probs=21.0

Q ss_pred             HHHHHHHhhhHhhh----ccCCeEEEEccCccHHHHHHh
Q 032981           76 AVAENLLDRLEDCR----KTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        76 eVAerL~DRL~~Ik----R~f~~aLDLGcgtG~l~~~L~  110 (129)
                      .+.+-+.+.+..+-    ....+|||||||+|.+...+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~   74 (263)
T 2a14_A           36 EMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAA   74 (263)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTG
T ss_pred             HHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHH
Confidence            34444444444331    234589999999997665443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=94.18  E-value=0.02  Score=44.84  Aligned_cols=32  Identities=16%  Similarity=0.056  Sum_probs=23.3

Q ss_pred             hhhHhhh---ccCCeEEEEccCccHHHHHHhccCC
Q 032981           83 DRLEDCR---KTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        83 DRL~~Ik---R~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      .||..+.   ....++||+|||+|+++-.|.+.+.
T Consensus        10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~   44 (230)
T 3lec_A           10 KRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGY   44 (230)
T ss_dssp             HHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCC
Confidence            3444443   2356899999999999998876554

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=94.18  E-value=0.029  Score=41.06  Aligned_cols=23  Identities=13%  Similarity=-0.093  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..+.+.+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~   65 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHG   65 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCC
Confidence            46799999999999998886553

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=94.13  E-value=0.036  Score=44.51  Aligned_cols=35  Identities=14%  Similarity=0.030  Sum_probs=24.5

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +++++.|.+.+..  ....+|||+|||+|.++..+.+
T Consensus        25 ~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~   59 (421)
T 2ih2_A           25 PEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFRE   59 (421)
T ss_dssp             HHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHH
Confidence            3455556555542  2356999999999999887754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=94.08  E-value=0.031  Score=44.07  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=25.1

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.+.+.+..  ....+|||||||+|.++..+.+.
T Consensus        62 ~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~la~~   96 (317)
T 1dl5_A           62 SLMALFMEWVGL--DKGMRVLEIGGGTGYNAAVMSRV   96 (317)
T ss_dssp             HHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCC--CCcCEEEEecCCchHHHHHHHHh
Confidence            555566665532  24679999999999998887543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=94.08  E-value=0.072  Score=38.84  Aligned_cols=22  Identities=5%  Similarity=-0.153  Sum_probs=18.7

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|..+..|...
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~   85 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLA   85 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTT
T ss_pred             CCCEEEEeCCcchHHHHHHHHh
Confidence            4679999999999999888653

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=94.03  E-value=0.034  Score=41.34  Aligned_cols=22  Identities=18%  Similarity=0.098  Sum_probs=18.3

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..|.+.
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~   95 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADI   95 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHH
T ss_pred             CCCEEEEEcccCCHHHHHHHHH
Confidence            4568999999999998887654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=94.02  E-value=0.05  Score=42.22  Aligned_cols=36  Identities=8%  Similarity=-0.026  Sum_probs=24.3

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .++.+.+.+........+|||+|||+|.++..+.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~  186 (335)
T 2r3s_A          151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQH  186 (335)
T ss_dssp             HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHH
T ss_pred             hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHH
Confidence            445566555321135679999999999998887543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=94.00  E-value=0.041  Score=42.68  Aligned_cols=23  Identities=17%  Similarity=-0.126  Sum_probs=18.6

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++-.+...+
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~  101 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAG  101 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTT
T ss_pred             CCCeEEEecccccHHHHHHHHcC
Confidence            45689999999999988776543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=93.97  E-value=0.062  Score=43.08  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=23.3

Q ss_pred             HHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        79 erL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +.+.+.+...  ...+|||||||+|.++..+.+.+
T Consensus        40 ~~i~~~l~~~--~~~~VLDiGcGtG~ls~~la~~g   72 (348)
T 2y1w_A           40 RAILQNHTDF--KDKIVLDVGCGSGILSFFAAQAG   72 (348)
T ss_dssp             HHHHHTGGGT--TTCEEEEETCTTSHHHHHHHHTT
T ss_pred             HHHHhccccC--CcCEEEEcCCCccHHHHHHHhCC
Confidence            3444444332  46799999999999998886553

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=93.96  E-value=0.032  Score=40.90  Aligned_cols=22  Identities=14%  Similarity=0.104  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...++||||||+|.++..|.+.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~   62 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQ   62 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCeEEEEccCcCHHHHHHHHH
Confidence            4678999999999998877543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=93.92  E-value=0.033  Score=42.49  Aligned_cols=22  Identities=9%  Similarity=-0.123  Sum_probs=18.5

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....|||||||+|.++..|.+.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~   67 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPL   67 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGG
T ss_pred             CCCeEEEEccCCcHHHHHHHHH
Confidence            4568999999999999988654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=93.90  E-value=0.052  Score=43.49  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=23.2

Q ss_pred             HHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        79 erL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+.+..+ ....+|||||||+|.++..|.+.
T Consensus       198 ~~l~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~  230 (372)
T 1fp1_D          198 KRMLEIYTGF-EGISTLVDVGGGSGRNLELIISK  230 (372)
T ss_dssp             HHHHHHCCTT-TTCSEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHhhcc-CCCCEEEEeCCCCcHHHHHHHHH
Confidence            4455444322 24679999999999999888654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=93.85  E-value=0.06  Score=39.77  Aligned_cols=39  Identities=15%  Similarity=0.010  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .++.+++..|...+..  ....+|||+|||+|..+..|...
T Consensus        37 ~~~~~~~~~l~~~~~~--~~~~~vLdiG~G~G~~~~~la~~   75 (233)
T 2gpy_A           37 IMDLLGMESLLHLLKM--AAPARILEIGTAIGYSAIRMAQA   75 (233)
T ss_dssp             CCCHHHHHHHHHHHHH--HCCSEEEEECCTTSHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhc--cCCCEEEEecCCCcHHHHHHHHH
Confidence            4556666666655443  24679999999999998877543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=93.77  E-value=0.11  Score=37.93  Aligned_cols=21  Identities=24%  Similarity=-0.048  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||+|||+|..+..+..
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~   89 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALAL   89 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHT
T ss_pred             CCCEEEEEcCCccHHHHHHHH
Confidence            467999999999999888865

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=93.76  E-value=0.051  Score=42.97  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=19.6

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+|||||||+|.++..+.+.
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~  116 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRH  116 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhC
Confidence            35789999999999999988655

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=93.74  E-value=0.046  Score=45.41  Aligned_cols=42  Identities=14%  Similarity=0.062  Sum_probs=28.9

Q ss_pred             hHHH--HHHHHHHHhhhHhhh--ccCCeEEEEccCccHHHHHHhcc
Q 032981           71 DSFV--DAVAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        71 ~fLq--~eVAerL~DRL~~Ik--R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .|.|  ....+.|.+.+....  ....++||+|||+|.++-.|...
T Consensus       262 ~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~  307 (433)
T 1uwv_A          262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ  307 (433)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT
T ss_pred             cccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh
Confidence            4555  555666666554332  23568999999999999988654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=93.72  E-value=0.067  Score=42.59  Aligned_cols=24  Identities=21%  Similarity=0.155  Sum_probs=20.3

Q ss_pred             ccCCeEEEEccCccHHHHHHhccC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+.+|||||||+|.++..+.+..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~  117 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP  117 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC
Confidence            357899999999999999987653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=93.72  E-value=0.03  Score=40.49  Aligned_cols=33  Identities=21%  Similarity=0.080  Sum_probs=23.3

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.+.+..  ....+|||+|||+|.++..+.+.
T Consensus        26 ~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~   58 (219)
T 3dh0_A           26 PEKVLKEFGL--KEGMTVLDVGTGAGFYLPYLSKM   58 (219)
T ss_dssp             HHHHHHHHTC--CTTCEEEESSCTTCTTHHHHHHH
T ss_pred             HHHHHHHhCC--CCCCEEEEEecCCCHHHHHHHHH
Confidence            3555555532  24669999999999988887554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=93.68  E-value=0.043  Score=40.66  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=23.7

Q ss_pred             HHHHHHHhhhHhhh-ccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~Ik-R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+..+..-+..+. ....+|||+|||+|.++..|.+.
T Consensus        61 ~~~~~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~   98 (233)
T 2ipx_A           61 KLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDI   98 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             hHHHHHHhHHheecCCCCCEEEEEcccCCHHHHHHHHH
Confidence            44444443233322 23568999999999998888543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=93.64  E-value=0.048  Score=44.99  Aligned_cols=22  Identities=23%  Similarity=0.086  Sum_probs=18.7

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..+.+.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~  254 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM  254 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc
Confidence            4568999999999999888654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=93.64  E-value=0.087  Score=39.91  Aligned_cols=31  Identities=13%  Similarity=-0.032  Sum_probs=22.2

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ++..+..+. ...+|||||||+|..+..|...
T Consensus        54 ~l~~l~~~~-~~~~VLdiG~G~G~~~~~la~~   84 (248)
T 3tfw_A           54 FLALLVRLT-QAKRILEIGTLGGYSTIWMARE   84 (248)
T ss_dssp             HHHHHHHHH-TCSEEEEECCTTSHHHHHHHTT
T ss_pred             HHHHHHhhc-CCCEEEEecCCchHHHHHHHHh
Confidence            333443333 4789999999999998888653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=93.61  E-value=0.04  Score=40.50  Aligned_cols=22  Identities=14%  Similarity=0.016  Sum_probs=18.0

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..|.+.
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~   94 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDI   94 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHH
T ss_pred             CCCEEEEEeccCCHHHHHHHHH
Confidence            4568999999999988877543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=93.55  E-value=0.095  Score=41.17  Aligned_cols=31  Identities=13%  Similarity=0.053  Sum_probs=23.0

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+.+.. .....+|||||||+|.++..+.+
T Consensus       169 ~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~  199 (352)
T 3mcz_A          169 DVVSELGV-FARARTVIDLAGGHGTYLAQVLR  199 (352)
T ss_dssp             HHHHTCGG-GTTCCEEEEETCTTCHHHHHHHH
T ss_pred             HHHHhCCC-cCCCCEEEEeCCCcCHHHHHHHH
Confidence            56665543 22378999999999999888754

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=93.53  E-value=0.043  Score=44.66  Aligned_cols=55  Identities=13%  Similarity=0.043  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHhHhhh---cCCC-ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           51 FDRHLKRKQRDRAAW---LTRP-NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        51 FDR~~vr~~r~RAA~---~y~~-~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .||..-+....+.-.   .|.. ++|=..++.    |+ ..+ +.-.+||||||++|.|++....
T Consensus        36 ~~r~~ar~~l~~~~~~~~~YrSRaA~KL~ei~----ek-~~l-~~~~~VLDLGaAPGGWSQvAa~   94 (277)
T 3evf_A           36 VDRDTARRHLAEGKVDTGVAVSRGTAKLRWFH----ER-GYV-KLEGRVIDLGCGRGGWCYYAAA   94 (277)
T ss_dssp             ECCHHHHHHHHTTCCSSCBCSSTHHHHHHHHH----HT-TSS-CCCEEEEEETCTTCHHHHHHHT
T ss_pred             ccHHHHHHHHhcCCccCCCccccHHHHHHHHH----Hh-CCC-CCCCEEEEecCCCCHHHHHHHH
Confidence            566655555555322   1443 334333333    33 222 2345899999999999996543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=93.51  E-value=0.08  Score=42.47  Aligned_cols=23  Identities=9%  Similarity=-0.071  Sum_probs=19.2

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..+.+.+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~g   86 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKAG   86 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT
T ss_pred             CCCEEEEeeccCcHHHHHHHHcC
Confidence            45689999999999988886654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=93.48  E-value=0.069  Score=38.12  Aligned_cols=22  Identities=9%  Similarity=-0.192  Sum_probs=17.9

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..+.+.
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~   43 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASL   43 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCHHHHHHHHH
Confidence            4569999999999988877543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=93.47  E-value=0.11  Score=38.77  Aligned_cols=22  Identities=5%  Similarity=-0.114  Sum_probs=18.4

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|..+..|...
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~   81 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASA   81 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHHh
Confidence            4779999999999998887543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=93.45  E-value=0.032  Score=41.30  Aligned_cols=22  Identities=9%  Similarity=-0.068  Sum_probs=17.8

Q ss_pred             CCeEEEEccCccHHHHHHhccC
Q 032981           92 FPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+|||||||+|.++..+...+
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~   78 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACES   78 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGT
T ss_pred             CCEEEEECCCccHHHHHHhhcc
Confidence            4589999999999888776543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=93.44  E-value=0.035  Score=41.82  Aligned_cols=22  Identities=14%  Similarity=-0.041  Sum_probs=18.1

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..+...
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~   70 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPA   70 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh
Confidence            3568999999999998887654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=93.44  E-value=0.097  Score=38.03  Aligned_cols=22  Identities=9%  Similarity=0.040  Sum_probs=18.6

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|..+..|...
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~   77 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARA   77 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHh
Confidence            5679999999999998888543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=93.43  E-value=0.042  Score=44.71  Aligned_cols=44  Identities=9%  Similarity=-0.106  Sum_probs=33.0

Q ss_pred             CCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        67 y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +...+.+.+.++..|.+..  . .....+||+|||+|.++-.+...+
T Consensus       196 ~~~~a~l~~~la~~l~~~~--~-~~~~~vLD~gCGsG~~~i~~a~~~  239 (373)
T 3tm4_A          196 YDHPAHLKASIANAMIELA--E-LDGGSVLDPMCGSGTILIELALRR  239 (373)
T ss_dssp             SCCTTCCCHHHHHHHHHHH--T-CCSCCEEETTCTTCHHHHHHHHTT
T ss_pred             ccCCCCccHHHHHHHHHhh--c-CCCCEEEEccCcCcHHHHHHHHhC
Confidence            3345667888888888665  2 356789999999999988776544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=93.42  E-value=0.063  Score=42.01  Aligned_cols=23  Identities=22%  Similarity=0.161  Sum_probs=19.8

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.+|||||||+|.++..+.+..
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~  100 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYK  100 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCT
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcC
Confidence            57899999999999999886653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=93.34  E-value=0.062  Score=42.67  Aligned_cols=34  Identities=12%  Similarity=0.211  Sum_probs=24.1

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +++.+.+.+..  ....+|||||||+|.++..+.+.
T Consensus       178 ~~~~l~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~  211 (359)
T 1x19_A          178 AIQLLLEEAKL--DGVKKMIDVGGGIGDISAAMLKH  211 (359)
T ss_dssp             HHHHHHHHCCC--TTCCEEEEESCTTCHHHHHHHHH
T ss_pred             hHHHHHHhcCC--CCCCEEEEECCcccHHHHHHHHH
Confidence            34555555432  34679999999999998888543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=93.33  E-value=0.067  Score=43.13  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=22.6

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ++.+.+.+... ....+|||||||+|.++..|.+
T Consensus       191 ~~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~  223 (368)
T 3reo_A          191 MKKILEMYNGF-EGLTTIVDVGGGTGAVASMIVA  223 (368)
T ss_dssp             HHHHHTTCCTT-TTCSEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHhcccc-cCCCEEEEeCCCcCHHHHHHHH
Confidence            34444444322 2467999999999999988854

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=93.31  E-value=0.1  Score=40.95  Aligned_cols=22  Identities=14%  Similarity=0.012  Sum_probs=18.1

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++-.|...
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~  144 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF  144 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCEEEEEeCchhHHHHHHHHC
Confidence            4568999999999998887543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=93.21  E-value=0.071  Score=43.25  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=19.4

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+|||||||+|.++..|.+.
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~  141 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARH  141 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTC
T ss_pred             CCCEEEEECCCccHHHHHHHHc
Confidence            5789999999999999988765

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=93.18  E-value=0.035  Score=41.43  Aligned_cols=37  Identities=11%  Similarity=-0.132  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....+..+.+.+..  ....+|||+|||+|.++..+...
T Consensus        78 ~~~~~~~i~~~~~~--~~~~~vldiG~G~G~~~~~l~~~  114 (255)
T 3mb5_A           78 HPKDAALIVAYAGI--SPGDFIVEAGVGSGALTLFLANI  114 (255)
T ss_dssp             CHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             cHhHHHHHHHhhCC--CCCCEEEEecCCchHHHHHHHHH
Confidence            34444555554432  24679999999999998887554

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=93.14  E-value=0.08  Score=42.10  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=22.6

Q ss_pred             HHHhhhH-hhhccCCeEEEEccCccHHHHHHhcc
Q 032981           80 NLLDRLE-DCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        80 rL~DRL~-~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+.+. .+ ....+|||||||+|.++..+.+.
T Consensus       182 ~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~  214 (358)
T 1zg3_A          182 LVLQENKRVF-EGLESLVDVGGGTGGVTKLIHEI  214 (358)
T ss_dssp             HHHHHTHHHH-HTCSEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHhcchhc-cCCCEEEEECCCcCHHHHHHHHH
Confidence            3454442 22 24679999999999999888654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=93.08  E-value=0.11  Score=43.49  Aligned_cols=41  Identities=17%  Similarity=0.104  Sum_probs=29.5

Q ss_pred             hHHH--HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           71 DSFV--DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        71 ~fLq--~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .|.|  ...++.|.+.+.. .....++||+|||+|.++-.|.+.
T Consensus       269 ~F~q~n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~  311 (425)
T 2jjq_A          269 SFFQTNSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKR  311 (425)
T ss_dssp             SCCCSBHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHT
T ss_pred             cccccCHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHc
Confidence            4554  3556666666655 345679999999999999888654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=93.08  E-value=0.059  Score=39.46  Aligned_cols=24  Identities=13%  Similarity=0.007  Sum_probs=19.5

Q ss_pred             hccCCeEEEEccC-ccHHHHHHhcc
Q 032981           89 RKTFPTALCLGGS-LEAVRRLLRGR  112 (129)
Q Consensus        89 kR~f~~aLDLGcg-tG~l~~~L~~~  112 (129)
                      .....+|||+||| +|.++..+...
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~   77 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKF   77 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHH
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHh
Confidence            3457899999999 99998877554

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=93.08  E-value=0.12  Score=41.09  Aligned_cols=23  Identities=9%  Similarity=-0.062  Sum_probs=19.0

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..+.+.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g   60 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHG   60 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC
T ss_pred             CCCEEEEecCccHHHHHHHHHCC
Confidence            45789999999999988886543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=93.05  E-value=0.046  Score=41.17  Aligned_cols=23  Identities=17%  Similarity=-0.062  Sum_probs=18.5

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....+|||||||+|.++..+...
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~   85 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA   85 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC
Confidence            35679999999999887777554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=93.03  E-value=0.12  Score=39.42  Aligned_cols=21  Identities=5%  Similarity=-0.227  Sum_probs=17.6

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+|||||||+|+.+..|..
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~   99 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATAL   99 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHH
T ss_pred             CcCEEEEeCCCcCHHHHHHHH
Confidence            477999999999998877743

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=93.00  E-value=0.099  Score=42.16  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=22.6

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ++.+.+.+... ....+|||||||+|.++..|.+
T Consensus       189 ~~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~  221 (364)
T 3p9c_A          189 TKKLLELYHGF-EGLGTLVDVGGGVGATVAAIAA  221 (364)
T ss_dssp             HHHHHHHCCTT-TTCSEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHhcccc-cCCCEEEEeCCCCCHHHHHHHH
Confidence            34444444322 2467999999999999988854

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=92.98  E-value=0.05  Score=43.22  Aligned_cols=21  Identities=14%  Similarity=0.017  Sum_probs=17.9

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||||||+|.++..|.+
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~  204 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLR  204 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHH
T ss_pred             CCceEEEECCccCHHHHHHHH
Confidence            466999999999999988854

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=92.96  E-value=0.087  Score=42.21  Aligned_cols=22  Identities=14%  Similarity=0.006  Sum_probs=18.9

Q ss_pred             ccCCeEEEEccCccHHHHHHhc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+.+|||||||+|.++..|.+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~  199 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQ  199 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcCHHHHHHHH
Confidence            3678999999999999988854

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=92.82  E-value=0.076  Score=37.95  Aligned_cols=21  Identities=14%  Similarity=-0.031  Sum_probs=15.9

Q ss_pred             cCCeEEEEccCccHH-HHHHhc
Q 032981           91 TFPTALCLGGSLEAV-RRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l-~~~L~~  111 (129)
                      ...+|||+|||+|.+ ...+..
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~   44 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVE   44 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHh
Confidence            467999999999987 445433

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=92.80  E-value=0.16  Score=38.24  Aligned_cols=21  Identities=10%  Similarity=-0.181  Sum_probs=17.7

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+|||||||+|..+..+.+
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~   90 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTAL   90 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHH
Confidence            578999999999998877743

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=92.76  E-value=0.13  Score=39.51  Aligned_cols=20  Identities=20%  Similarity=-0.022  Sum_probs=16.3

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ...+|||||||+|..+-.|.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la   99 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLK   99 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHH
Confidence            45689999999998876664

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=92.71  E-value=0.087  Score=41.10  Aligned_cols=19  Identities=11%  Similarity=0.214  Sum_probs=16.8

Q ss_pred             CeEEEEccCccHHHHHHhc
Q 032981           93 PTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        93 ~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+|||+|||+|..+..+.+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~  187 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQ  187 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHH
Confidence            7999999999999888754

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=92.68  E-value=0.061  Score=40.78  Aligned_cols=24  Identities=17%  Similarity=0.026  Sum_probs=19.9

Q ss_pred             cCCeEEEEccCccHHHHHHhccCC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      ...+|||+|||+|.++..+.+.+.
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~   72 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTK   72 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcC
Confidence            467999999999999998876543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=92.68  E-value=0.14  Score=47.92  Aligned_cols=39  Identities=13%  Similarity=0.102  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +..+..+.+.+.|...  ...+|||||||+|.++..|.+.+
T Consensus       705 L~eqRle~LLelL~~~--~g~rVLDVGCGTG~lai~LAr~g  743 (950)
T 3htx_A          705 LSKQRVEYALKHIRES--SASTLVDFGCGSGSLLDSLLDYP  743 (950)
T ss_dssp             HHHHHHHHHHHHHHHS--CCSEEEEETCSSSHHHHHHTSSC
T ss_pred             HHHHHHHHHHHHhccc--CCCEEEEECCCCCHHHHHHHHhC
Confidence            3334444455555432  57799999999999999997765

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=92.65  E-value=0.11  Score=41.10  Aligned_cols=22  Identities=9%  Similarity=0.276  Sum_probs=18.7

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..|.+.
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~  209 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICET  209 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHH
T ss_pred             cCceEEEeCCCccHHHHHHHHH
Confidence            4679999999999999888643

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=92.64  E-value=0.076  Score=41.10  Aligned_cols=20  Identities=5%  Similarity=-0.213  Sum_probs=17.5

Q ss_pred             ccCCeEEEEccCccHHHHHH
Q 032981           90 KTFPTALCLGGSLEAVRRLL  109 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L  109 (129)
                      ....+|||||||+|..+..|
T Consensus       117 ~~~~~vLDiGcG~G~~~~~l  136 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLAL  136 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTS
T ss_pred             CCCCEEEEecCCCCHHHHHH
Confidence            45678999999999999887

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=92.63  E-value=0.14  Score=38.90  Aligned_cols=36  Identities=14%  Similarity=-0.074  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+.+.-|. .|... ..+.+|||||||+|..+-.|..
T Consensus        45 ~~~~~~~l~-~l~~~-~~~~~VLDiG~G~G~~t~~la~   80 (242)
T 3r3h_A           45 APEQAQFMQ-MLIRL-TRAKKVLELGTFTGYSALAMSL   80 (242)
T ss_dssp             CHHHHHHHH-HHHHH-HTCSEEEEEESCCSHHHHHHHH
T ss_pred             CHHHHHHHH-HHHhh-cCcCEEEEeeCCcCHHHHHHHH
Confidence            344444333 33332 2478999999999998887754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=92.61  E-value=0.059  Score=42.08  Aligned_cols=22  Identities=23%  Similarity=0.215  Sum_probs=19.4

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+|||||||+|.++..+.+.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~   96 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKH   96 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTC
T ss_pred             CCCEEEEECCchHHHHHHHHhC
Confidence            5789999999999999988665

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=92.59  E-value=0.067  Score=42.98  Aligned_cols=23  Identities=9%  Similarity=-0.065  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..+.+.+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g   88 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAG   88 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTT
T ss_pred             CCCEEEEEeccchHHHHHHHHCC
Confidence            46789999999999998886653

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=92.38  E-value=0.057  Score=41.92  Aligned_cols=24  Identities=4%  Similarity=-0.187  Sum_probs=19.2

Q ss_pred             ccCCeEEEEccCccHHHHHHhccC
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ....+|||+|||+|.++-.+.+.+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~  147 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYG  147 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT
T ss_pred             CCCCEEEEecccCCHHHHHHHHhC
Confidence            346799999999999988876543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=92.29  E-value=0.063  Score=41.88  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+|||||||+|.++..+.+.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~   96 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH   96 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC
Confidence            5779999999999999988665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=92.29  E-value=0.065  Score=42.62  Aligned_cols=23  Identities=22%  Similarity=0.157  Sum_probs=19.8

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+|||||||+|.++..+.+.
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~   98 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKH   98 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhc
Confidence            35789999999999999988665

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=92.26  E-value=0.15  Score=41.03  Aligned_cols=23  Identities=13%  Similarity=-0.114  Sum_probs=18.6

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||+|||+|.++-.+...+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g  175 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG  175 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT
T ss_pred             CCCcEEEcccccCHHHHHHHHcC
Confidence            35689999999999988876543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=92.23  E-value=0.086  Score=39.79  Aligned_cols=36  Identities=14%  Similarity=-0.022  Sum_probs=24.7

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ....+..+.+.+. + ....+|||+|||+|.++..|..
T Consensus        84 ~~~~~~~i~~~~~-~-~~~~~vLdiG~G~G~~~~~l~~  119 (280)
T 1i9g_A           84 YPKDAAQIVHEGD-I-FPGARVLEAGAGSGALTLSLLR  119 (280)
T ss_dssp             CHHHHHHHHHHTT-C-CTTCEEEEECCTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHcC-C-CCCCEEEEEcccccHHHHHHHH
Confidence            3344455655553 2 3466999999999999887754

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=92.19  E-value=0.08  Score=43.04  Aligned_cols=23  Identities=13%  Similarity=-0.113  Sum_probs=19.2

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..+.+.|
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g   85 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAG   85 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTT
T ss_pred             CCCEEEEeccCcCHHHHHHHhcC
Confidence            45789999999999998886654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=92.10  E-value=0.072  Score=42.03  Aligned_cols=22  Identities=18%  Similarity=0.155  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+|||||||+|.++..+.+.
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~  111 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKH  111 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTS
T ss_pred             CCCEEEEEcCCcCHHHHHHHhc
Confidence            5689999999999999988765

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=92.06  E-value=0.11  Score=42.34  Aligned_cols=31  Identities=13%  Similarity=0.021  Sum_probs=23.9

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +|.||-  +-+.-.+||||||++|.|++...+.
T Consensus        64 EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~   94 (269)
T 2px2_A           64 WLVERR--FVQPIGKVVDLGCGRGGWSYYAATM   94 (269)
T ss_dssp             HHHHTT--SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred             HHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence            455662  4455779999999999999988665

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=92.06  E-value=0.077  Score=43.31  Aligned_cols=21  Identities=10%  Similarity=-0.078  Sum_probs=17.3

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .-.+||||||++|.|++....
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~  110 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAAS  110 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHT
T ss_pred             CCCEEEEeCCCCCHHHHHHHH
Confidence            445899999999999996543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=92.03  E-value=0.17  Score=43.04  Aligned_cols=23  Identities=9%  Similarity=-0.112  Sum_probs=18.9

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..+.+.+
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~  180 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAG  180 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTT
T ss_pred             CCCEEEEecCcccHHHHHHHHcC
Confidence            45799999999999988886543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=91.99  E-value=0.14  Score=41.02  Aligned_cols=22  Identities=18%  Similarity=0.188  Sum_probs=18.5

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++..+.+.
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~  223 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDA  223 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHH
T ss_pred             cCcEEEEeCCCccHHHHHHHHH
Confidence            4679999999999999888543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=91.98  E-value=0.071  Score=40.86  Aligned_cols=39  Identities=10%  Similarity=-0.046  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .++...++.+.+.+..  ....+|||+|||+|.++..|.+.
T Consensus        93 ~~~~~~~~~~~~~~~~--~~~~~VLD~G~G~G~~~~~la~~  131 (275)
T 1yb2_A           93 IISEIDASYIIMRCGL--RPGMDILEVGVGSGNMSSYILYA  131 (275)
T ss_dssp             -------------CCC--CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             ccChhhHHHHHHHcCC--CCcCEEEEecCCCCHHHHHHHHH
Confidence            3444445556655532  24569999999999988877543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=91.87  E-value=0.03  Score=44.72  Aligned_cols=36  Identities=17%  Similarity=0.100  Sum_probs=25.0

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +..+.|.+.+..  ....+|||+|||+|.++..+.+.+
T Consensus       183 ~~~~~ll~~l~~--~~~~~VLDlGcG~G~~~~~la~~~  218 (343)
T 2pjd_A          183 VGSQLLLSTLTP--HTKGKVLDVGCGAGVLSVAFARHS  218 (343)
T ss_dssp             HHHHHHHHHSCT--TCCSBCCBTTCTTSHHHHHHHHHC
T ss_pred             HHHHHHHHhcCc--CCCCeEEEecCccCHHHHHHHHHC
Confidence            345556655532  235689999999999998886543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=91.86  E-value=0.069  Score=43.66  Aligned_cols=22  Identities=18%  Similarity=0.018  Sum_probs=18.1

Q ss_pred             ccCCeEEEEccCccHHHHHHhc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+.+|||||||+|-++-.+..
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~  152 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMG  152 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTT
T ss_pred             CCCceeeeeccCccHHHHHHHh
Confidence            4588999999999998876643

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=91.85  E-value=0.12  Score=41.58  Aligned_cols=20  Identities=20%  Similarity=0.107  Sum_probs=17.5

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      .+.+|||||||+|.++-.+.
T Consensus       105 ~p~~VLDlGCG~gpLal~~~  124 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER  124 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT
T ss_pred             CCCeEEEecCCccHHHHHhc
Confidence            57899999999999988765

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=91.76  E-value=0.058  Score=44.25  Aligned_cols=31  Identities=13%  Similarity=0.078  Sum_probs=22.0

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      -|.+.+...  ...+|||+|||+|.++..+.+.
T Consensus       213 ~ll~~l~~~--~~~~VLDlGcG~G~~s~~la~~  243 (375)
T 4dcm_A          213 FFMQHLPEN--LEGEIVDLGCGNGVIGLTLLDK  243 (375)
T ss_dssp             HHHHTCCCS--CCSEEEEETCTTCHHHHHHHHH
T ss_pred             HHHHhCccc--CCCeEEEEeCcchHHHHHHHHH
Confidence            344444332  2379999999999999888654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=91.74  E-value=0.17  Score=37.44  Aligned_cols=33  Identities=15%  Similarity=0.087  Sum_probs=23.2

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +..+.+.+. + ....+|||+|||+|.++..+...
T Consensus        85 ~~~~~~~~~-~-~~~~~vLdiG~G~G~~~~~l~~~  117 (258)
T 2pwy_A           85 ASAMVTLLD-L-APGMRVLEAGTGSGGLTLFLARA  117 (258)
T ss_dssp             HHHHHHHTT-C-CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHHcC-C-CCCCEEEEECCCcCHHHHHHHHH
Confidence            345555543 2 34679999999999988877544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=91.72  E-value=0.29  Score=36.56  Aligned_cols=21  Identities=10%  Similarity=-0.187  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||+|||+|..+..|..
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~   92 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMAL   92 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHT
T ss_pred             CCCEEEEecCCCCHHHHHHHH
Confidence            477999999999999888854

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=91.66  E-value=0.11  Score=40.87  Aligned_cols=39  Identities=13%  Similarity=0.051  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      +.+...+..+.+.+. + ....+|||+|||+|.++..|.+.
T Consensus        88 ~~~~~~~~~~l~~l~-~-~~g~~VLDiG~G~G~~~~~la~~  126 (336)
T 2b25_A           88 ITFPKDINMILSMMD-I-NPGDTVLEAGSGSGGMSLFLSKA  126 (336)
T ss_dssp             CCCHHHHHHHHHHHT-C-CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHhcC-C-CCCCEEEEeCCCcCHHHHHHHHH
Confidence            344444556666553 2 34679999999999998887653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=91.64  E-value=0.15  Score=40.88  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=19.3

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+|||||||+|.++..+.+.
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~  129 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKH  129 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTC
T ss_pred             CCCEEEEEcCCcCHHHHHHHHc
Confidence            5789999999999999988654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=91.59  E-value=0.1  Score=41.27  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=18.4

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..|.+.
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~  203 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALR  203 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHH
Confidence            4679999999999998888543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=91.56  E-value=0.1  Score=41.14  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||||||+|.++..+.+.
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~  204 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARR  204 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHH
T ss_pred             cCcEEEEeCCcCcHHHHHHHHh
Confidence            4679999999999998887543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=91.56  E-value=0.097  Score=45.07  Aligned_cols=36  Identities=11%  Similarity=0.088  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      +...+...|++.+. + ....++||||||+|.+.-.+.
T Consensus       157 t~~~~i~~il~~l~-l-~~gd~VLDLGCGtG~l~l~lA  192 (438)
T 3uwp_A          157 TSFDLVAQMIDEIK-M-TDDDLFVDLGSGVGQVVLQVA  192 (438)
T ss_dssp             THHHHHHHHHHHHC-C-CTTCEEEEESCTTSHHHHHHH
T ss_pred             CCHHHHHHHHHhcC-C-CCCCEEEEeCCCCCHHHHHHH
Confidence            33444455555442 1 346799999999999887765

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=91.52  E-value=0.089  Score=42.17  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=19.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+|||||||+|.++..+.+.
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~  137 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKY  137 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTC
T ss_pred             CCCEEEEEcCCccHHHHHHHHc
Confidence            5689999999999999988665

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=91.29  E-value=0.1  Score=43.37  Aligned_cols=23  Identities=13%  Similarity=-0.026  Sum_probs=17.3

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .-.+|||||||+|.++-...+.|
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG  105 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG  105 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC
Confidence            35689999999998876554443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=91.20  E-value=0.11  Score=42.81  Aligned_cols=56  Identities=13%  Similarity=0.073  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHhHhhh---cCCC-ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           51 FDRHLKRKQRDRAAW---LTRP-NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        51 FDR~~vr~~r~RAA~---~y~~-~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .||..-+....+.-.   .|.. ++|=..++-    |+ .. .+.-.+||||||++|.|++.+.+.
T Consensus        43 ~dr~~ar~~l~~~~~~~g~yrSRaa~KL~ei~----ek-~l-~~~g~~vlDLGaaPGgWsqva~~~  102 (300)
T 3eld_A           43 VDRTAARRYLKEGRTDVGISVSRGAAKIRWLH----ER-GY-LRITGRVLDLGCGRGGWSYYAAAQ  102 (300)
T ss_dssp             ECCHHHHHHHHHTCSSSCCCSSTTHHHHHHHH----HH-TS-CCCCEEEEEETCTTCHHHHHHHTS
T ss_pred             ccHHHHHHHHHcCCccCCCccchHHHHHHHHH----Hh-CC-CCCCCEEEEcCCCCCHHHHHHHHh
Confidence            566666555555421   2443 445444443    33 22 335679999999999999998764

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=90.82  E-value=0.22  Score=37.38  Aligned_cols=19  Identities=11%  Similarity=0.071  Sum_probs=15.9

Q ss_pred             CeEEEEccCccHHHHHHhc
Q 032981           93 PTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        93 ~~aLDLGcgtG~l~~~L~~  111 (129)
                      ++|||||||+|..+-.|..
T Consensus        58 ~~vLdiG~G~G~~~~~la~   76 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILN   76 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHH
Confidence            3899999999998877743

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=90.69  E-value=0.14  Score=40.00  Aligned_cols=31  Identities=23%  Similarity=0.149  Sum_probs=22.2

Q ss_pred             HHhhhHhhh-ccCCeEEEEccCccHHHHHHhc
Q 032981           81 LLDRLEDCR-KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        81 L~DRL~~Ik-R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      |+.=|+.+. +.-.+|||||||+|..+..|..
T Consensus        66 i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~   97 (233)
T 4df3_A           66 LLKGLIELPVKEGDRILYLGIASGTTASHMSD   97 (233)
T ss_dssp             HHTTCSCCCCCTTCEEEEETCTTSHHHHHHHH
T ss_pred             HHhchhhcCCCCCCEEEEecCcCCHHHHHHHH
Confidence            443344443 3567999999999999888853

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=90.63  E-value=0.11  Score=40.45  Aligned_cols=22  Identities=14%  Similarity=0.021  Sum_probs=18.8

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+.+|||||||+|.++..+.+.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~   93 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY   93 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC
Confidence            5789999999999999877654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=90.51  E-value=0.33  Score=36.45  Aligned_cols=22  Identities=14%  Similarity=0.046  Sum_probs=18.4

Q ss_pred             ccCCeEEEEccCcc-HHHHHHhc
Q 032981           90 KTFPTALCLGGSLE-AVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG-~l~~~L~~  111 (129)
                      ....+|||+|||.| ..+..|.+
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~   56 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRK   56 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHH
T ss_pred             CCCCcEEEEccCCChHHHHHHHH
Confidence            34679999999999 58999875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=90.19  E-value=0.14  Score=40.14  Aligned_cols=20  Identities=15%  Similarity=0.180  Sum_probs=17.3

Q ss_pred             CCeEEEEccCccHHHHHHhc
Q 032981           92 FPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..+|||+|||+|.++..+.+
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~  189 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLT  189 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHH
T ss_pred             CCEEEEeCCChhHHHHHHHH
Confidence            57999999999999888754

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=90.13  E-value=0.19  Score=41.54  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=27.6

Q ss_pred             HHHHHHHHhhhHhhhc-----cCCeEEEEccCccHHHHHHhcc
Q 032981           75 DAVAENLLDRLEDCRK-----TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR-----~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+++++.+.+. ++.     .-..|||||.|+|.++..|.+.
T Consensus        38 ~~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~   79 (353)
T 1i4w_A           38 PTVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNK   79 (353)
T ss_dssp             HHHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhh
Confidence            356677777765 333     2478999999999999999754

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=89.83  E-value=0.13  Score=39.38  Aligned_cols=22  Identities=18%  Similarity=0.055  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++-.|...
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~   57 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAAR   57 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHH
T ss_pred             CCCEEEEeCChHhHHHHHHHHh
Confidence            3568999999999998877654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=89.71  E-value=0.49  Score=38.16  Aligned_cols=21  Identities=14%  Similarity=-0.181  Sum_probs=17.8

Q ss_pred             CCeEEEEccCccHHHHHHhcc
Q 032981           92 FPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..++||+|||+|.++-.|...
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~  234 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN  234 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG
T ss_pred             CCEEEEccCCCCHHHHHHHhc
Confidence            468999999999999888653

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=89.23  E-value=0.23  Score=36.48  Aligned_cols=35  Identities=14%  Similarity=0.004  Sum_probs=23.9

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+..+.+.+..  ....+|||+|||+|.++..+.+.
T Consensus        78 ~~~~~~~~~~~~--~~~~~vldiG~G~G~~~~~l~~~  112 (248)
T 2yvl_A           78 KDSFYIALKLNL--NKEKRVLEFGTGSGALLAVLSEV  112 (248)
T ss_dssp             HHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             hhHHHHHHhcCC--CCCCEEEEeCCCccHHHHHHHHh
Confidence            334455555432  24679999999999998877543

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=89.22  E-value=0.33  Score=38.92  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=22.5

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +..+.+.++.  ..+.+++|||||+|.++..|.+
T Consensus       168 ~~~~~~~~~~--~~~~~v~DvGgG~G~~~~~l~~  199 (353)
T 4a6d_A          168 GRSVLTAFDL--SVFPLMCDLGGGAGALAKECMS  199 (353)
T ss_dssp             HHHHHHSSCG--GGCSEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHhcCc--ccCCeEEeeCCCCCHHHHHHHH
Confidence            4445544432  2467999999999999888754

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=89.19  E-value=0.17  Score=42.15  Aligned_cols=45  Identities=24%  Similarity=0.059  Sum_probs=22.0

Q ss_pred             cCCCChHHHHHHHHHHHhhhH----hhhcc------CCeEEEEccCccHHHHHHh
Q 032981           66 LTRPNDSFVDAVAENLLDRLE----DCRKT------FPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        66 ~y~~~~fLq~eVAerL~DRL~----~IkR~------f~~aLDLGcgtG~l~~~L~  110 (129)
                      +|+....+|..+...+..-+.    .+...      .-+|+|+||++|..+-.+.
T Consensus        17 sY~~nS~~Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v   71 (374)
T 3b5i_A           17 SYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHII   71 (374)
T ss_dssp             ---------CTTHHHHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHH
Confidence            366666666666655443322    11122      3579999999998877663

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=88.32  E-value=0.32  Score=38.57  Aligned_cols=20  Identities=5%  Similarity=-0.177  Sum_probs=16.2

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ...+|||+|||+|.++-.+.
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~  149 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVI  149 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHH
T ss_pred             CCCEEEeCCCCccHHHHHHH
Confidence            35689999999999876653

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=88.31  E-value=0.24  Score=41.18  Aligned_cols=55  Identities=13%  Similarity=0.091  Sum_probs=31.8

Q ss_pred             CCHHHHHHHHhHhhhc---CCC-ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           51 FDRHLKRKQRDRAAWL---TRP-NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        51 FDR~~vr~~r~RAA~~---y~~-~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .||..-+....+--..   |.. +.|=..+    |.++ ..++ .-..||||||++|.+++....
T Consensus        56 vdr~~ar~~l~~g~~~~g~y~SR~~~KL~e----i~~~-~~l~-~~~~VlDLGaapGGwsq~~~~  114 (321)
T 3lkz_A           56 VDRSAAKHARKEGNVTGGHPVSRGTAKLRW----LVER-RFLE-PVGKVIDLGCGRGGWCYYMAT  114 (321)
T ss_dssp             ECCHHHHHHHHHTCCSSCCCSSTHHHHHHH----HHHT-TSCC-CCEEEEEETCTTCHHHHHHTT
T ss_pred             echHHHHHHHhcCcCcCCCccchHHHHHHH----HHHh-cCCC-CCCEEEEeCCCCCcHHHHHHh
Confidence            5776655554442221   333 3344443    3444 2333 455999999999999995543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=88.22  E-value=0.13  Score=40.80  Aligned_cols=40  Identities=10%  Similarity=-0.135  Sum_probs=27.8

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .-++|++.+.-+..-|. + ....+|||+|||+|..+..|.+
T Consensus        99 ~~~~qd~~s~l~~~~l~-~-~~g~~VLDlg~G~G~~t~~la~  138 (315)
T 1ixk_A           99 LIYIQEASSMYPPVALD-P-KPGEIVADMAAAPGGKTSYLAQ  138 (315)
T ss_dssp             SEEECCHHHHHHHHHHC-C-CTTCEEEECCSSCSHHHHHHHH
T ss_pred             eEEEeCHHHHHHHHHhC-C-CCCCEEEEeCCCCCHHHHHHHH
Confidence            34567776666555443 2 2457999999999998887754

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=87.51  E-value=0.3  Score=39.66  Aligned_cols=29  Identities=14%  Similarity=0.044  Sum_probs=20.7

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      |.|+- .+ +.-..|+||||++|.+++....
T Consensus        70 i~ek~-~l-~~g~~VvDLGaapGGWSq~~a~   98 (267)
T 3p8z_A           70 FVERN-MV-IPEGRVIDLGCGRGGWSYYCAG   98 (267)
T ss_dssp             HHHTT-SS-CCCEEEEEESCTTSHHHHHHHT
T ss_pred             HHHhc-CC-CCCCEEEEcCCCCCcHHHHHHH
Confidence            44454 34 3455999999999999995543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=87.30  E-value=0.36  Score=36.69  Aligned_cols=32  Identities=16%  Similarity=0.011  Sum_probs=22.1

Q ss_pred             HHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        79 erL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.+.+. + ....+|||+|||+|.++..+...
T Consensus       102 ~~i~~~~~-~-~~~~~VLDiG~G~G~~~~~la~~  133 (277)
T 1o54_A          102 SFIAMMLD-V-KEGDRIIDTGVGSGAMCAVLARA  133 (277)
T ss_dssp             HHHHHHTT-C-CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHhC-C-CCCCEEEEECCcCCHHHHHHHHH
Confidence            44554442 2 24569999999999988877543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=87.16  E-value=0.12  Score=42.64  Aligned_cols=41  Identities=15%  Similarity=-0.014  Sum_probs=30.2

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .-++|++.+.-+..-|..  ....+|||+|||+|..+..+.+.
T Consensus       227 ~~~~qd~~s~~~~~~l~~--~~g~~VLDlgaG~G~~t~~la~~  267 (429)
T 1sqg_A          227 WVTVQDASAQGCMTWLAP--QNGEHILDLCAAPGGKTTHILEV  267 (429)
T ss_dssp             SEEECCHHHHTHHHHHCC--CTTCEEEEESCTTCHHHHHHHHH
T ss_pred             CeEeeCHHHHHHHHHcCC--CCcCeEEEECCCchHHHHHHHHH
Confidence            345788888877765542  34679999999999988877543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=86.99  E-value=0.6  Score=39.32  Aligned_cols=27  Identities=19%  Similarity=-0.070  Sum_probs=22.0

Q ss_pred             hhhccCCeEEEEccCccHHHHHHhccC
Q 032981           87 DCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        87 ~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+-+...++|||||.+|.|++.|.++|
T Consensus       207 ~~l~~G~~vlDLGAaPGGWT~~l~~rg  233 (375)
T 4auk_A          207 ERLANGMWAVDLGACPGGWTYQLVKRN  233 (375)
T ss_dssp             HHSCTTCEEEEETCTTCHHHHHHHHTT
T ss_pred             ccCCCCCEEEEeCcCCCHHHHHHHHCC
Confidence            334567899999999999999997654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=86.76  E-value=0.32  Score=39.56  Aligned_cols=18  Identities=17%  Similarity=0.230  Sum_probs=14.8

Q ss_pred             cCCeEEEEccCccHHHHH
Q 032981           91 TFPTALCLGGSLEAVRRL  108 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~  108 (129)
                      ...+|||||||+|.++..
T Consensus       122 ~g~rVLDIGcG~G~~ta~  139 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGI  139 (298)
T ss_dssp             TTCEEEEECCCSSCHHHH
T ss_pred             CcCEEEEECCCccHHHHH
Confidence            578999999999976544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=86.59  E-value=0.16  Score=39.27  Aligned_cols=22  Identities=5%  Similarity=-0.164  Sum_probs=18.4

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...++||+|||+|.++-.+.+.
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~  140 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKY  140 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHH
T ss_pred             CCCEEEEecCcCCHHHHHHHHh
Confidence            4679999999999998887654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=86.49  E-value=0.32  Score=38.70  Aligned_cols=40  Identities=13%  Similarity=-0.016  Sum_probs=28.0

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+.+.+|..|...+..  .....+||+|||+|.++-.+..
T Consensus       184 ~a~l~~~la~~l~~~~~~--~~~~~vLD~gcGsG~~~ie~a~  223 (354)
T 3tma_A          184 RGSLTPVLAQALLRLADA--RPGMRVLDPFTGSGTIALEAAS  223 (354)
T ss_dssp             SCSCCHHHHHHHHHHTTC--CTTCCEEESSCTTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHhCC--CCCCEEEeCCCCcCHHHHHHHH
Confidence            345666677777765433  2456899999999998776644

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=86.28  E-value=0.45  Score=38.81  Aligned_cols=22  Identities=18%  Similarity=-0.173  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++-.+...
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~  233 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMG  233 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHT
T ss_pred             CCCeEEEEeeccCHHHHHHHHC
Confidence            4578999999999998877653

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=86.15  E-value=0.5  Score=38.49  Aligned_cols=18  Identities=22%  Similarity=0.327  Sum_probs=16.5

Q ss_pred             eEEEEccCccHHHHHHhc
Q 032981           94 TALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        94 ~aLDLGcgtG~l~~~L~~  111 (129)
                      +|||||||+|.++..|.+
T Consensus        92 rVLdIG~G~G~la~~la~  109 (317)
T 3gjy_A           92 RITHLGGGACTMARYFAD  109 (317)
T ss_dssp             EEEEESCGGGHHHHHHHH
T ss_pred             EEEEEECCcCHHHHHHHH
Confidence            899999999999998865

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=86.03  E-value=0.27  Score=39.48  Aligned_cols=22  Identities=9%  Similarity=-0.179  Sum_probs=18.1

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...++||+|||+|..+..+.+.
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~   47 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEH   47 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHH
T ss_pred             CCCEEEEEeCCcCHHHHHHHHH
Confidence            4568999999999998877554

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=85.95  E-value=0.3  Score=37.98  Aligned_cols=22  Identities=18%  Similarity=0.079  Sum_probs=18.2

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|..+-.|...
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~  104 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASL  104 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHT
T ss_pred             CcCeEEEeeCccCHHHHHHHHh
Confidence            3568999999999998887654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=85.66  E-value=0.71  Score=38.20  Aligned_cols=22  Identities=5%  Similarity=-0.180  Sum_probs=18.3

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++-.+...
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~  235 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK  235 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT
T ss_pred             CCCeEEEcccchhHHHHHHHHc
Confidence            4678999999999998877654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=85.48  E-value=0.49  Score=38.41  Aligned_cols=22  Identities=5%  Similarity=-0.360  Sum_probs=18.6

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++-.+...
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~  241 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMG  241 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHT
T ss_pred             CCCeEEEeeccCCHHHHHHHHC
Confidence            4678999999999998887654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=84.68  E-value=0.29  Score=41.63  Aligned_cols=42  Identities=5%  Similarity=-0.134  Sum_probs=28.1

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .-++|++.+.-+..-|..-.....+|||+|||+|..+-.|.+
T Consensus        96 ~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~  137 (479)
T 2frx_A           96 LFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISA  137 (479)
T ss_dssp             SEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHH
T ss_pred             EEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHH
Confidence            346677766655544432112467999999999998877754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=84.19  E-value=0.75  Score=37.20  Aligned_cols=22  Identities=5%  Similarity=-0.372  Sum_probs=18.7

Q ss_pred             cCCeEEEEccCccHHHHHHhcc
Q 032981           91 TFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...+|||+|||+|.++-.+...
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~  238 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA  238 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT
T ss_pred             CCCeEEEecCCCCHHHHHHHHC
Confidence            4679999999999998888654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=84.11  E-value=0.39  Score=39.84  Aligned_cols=44  Identities=16%  Similarity=-0.132  Sum_probs=26.6

Q ss_pred             cCCCChHHHHHHHHHHHhhhH----hhhc-----cCCeEEEEccCccHHHHHH
Q 032981           66 LTRPNDSFVDAVAENLLDRLE----DCRK-----TFPTALCLGGSLEAVRRLL  109 (129)
Q Consensus        66 ~y~~~~fLq~eVAerL~DRL~----~IkR-----~f~~aLDLGcgtG~l~~~L  109 (129)
                      +|.....+|..+...+...|.    .+..     ..-+|+|+||++|..+-.+
T Consensus        17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~   69 (359)
T 1m6e_X           17 SYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFA   69 (359)
T ss_dssp             TTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHH
Confidence            366666666666665544442    1111     2236899999999776544

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=83.94  E-value=1  Score=40.14  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhhhHhhhccC--CeEEEEccCccHHHH
Q 032981           73 FVDAVAENLLDRLEDCRKTF--PTALCLGGSLEAVRR  107 (129)
Q Consensus        73 Lq~eVAerL~DRL~~IkR~f--~~aLDLGcgtG~l~~  107 (129)
                      -++.|.+-|.|++...+..+  .+|||+|||+|.+..
T Consensus       337 Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~  373 (637)
T 4gqb_A          337 YQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVN  373 (637)
T ss_dssp             HHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHH
T ss_pred             HHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHH
Confidence            34556777888877766544  479999999998743

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=83.83  E-value=0.47  Score=36.47  Aligned_cols=21  Identities=10%  Similarity=-0.145  Sum_probs=17.5

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||+|||+|..+..|.+
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~  103 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQ  103 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHH
T ss_pred             CcCEEEEeCCCccHHHHHHHH
Confidence            456999999999998887754

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=82.92  E-value=0.78  Score=36.58  Aligned_cols=20  Identities=0%  Similarity=-0.223  Sum_probs=16.7

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...++||+|||+|.++-. ..
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~  214 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK  214 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT
T ss_pred             CCCEEEEccCccCHHHHh-cc
Confidence            467899999999998777 44

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=82.77  E-value=0.69  Score=39.01  Aligned_cols=22  Identities=18%  Similarity=0.030  Sum_probs=18.4

Q ss_pred             CCeEEEEccCccHHHHHHhccC
Q 032981           92 FPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+|||+|||+|..+-.|...+
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g  115 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKA  115 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTC
T ss_pred             CCEEEEeCCCchHHHHHHHhcC
Confidence            5789999999999988886543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=82.34  E-value=0.41  Score=39.83  Aligned_cols=40  Identities=13%  Similarity=-0.073  Sum_probs=27.7

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .-++|+..+.-+..-|. + ....+|||+|||+|..+..|..
T Consensus       240 ~~~~qd~~s~l~~~~l~-~-~~g~~VLDlgaG~G~~t~~la~  279 (450)
T 2yxl_A          240 KIIVQEEASAVASIVLD-P-KPGETVVDLAAAPGGKTTHLAE  279 (450)
T ss_dssp             SEEECCHHHHHHHHHHC-C-CTTCEEEESSCTTCHHHHHHHH
T ss_pred             eEEecCchhHHHHHhcC-C-CCcCEEEEeCCCccHHHHHHHH
Confidence            34567777666555443 2 2456999999999998887754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=82.18  E-value=0.51  Score=37.57  Aligned_cols=30  Identities=7%  Similarity=-0.067  Sum_probs=21.3

Q ss_pred             hhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           84 RLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        84 RL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      |+...-....+|||+|||+|.++=.+...|
T Consensus       118 ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g  147 (278)
T 3k6r_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYG  147 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTTHHHHHHT
T ss_pred             HHHHhcCCCCEEEEecCcCcHHHHHHHHhc
Confidence            444444567899999999998876554444

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=80.76  E-value=0.93  Score=36.62  Aligned_cols=21  Identities=14%  Similarity=-0.233  Sum_probs=17.3

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||+|||+|.++-.+..
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~  229 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLAL  229 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHH
Confidence            456899999999999887754

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=80.26  E-value=1.2  Score=36.70  Aligned_cols=34  Identities=6%  Similarity=-0.076  Sum_probs=22.4

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      +++++-|.+.+..  ....+|+|.|||+|.+.-.+.
T Consensus       157 ~~v~~~mv~~l~~--~~~~~VlDpacGsG~fl~~~~  190 (445)
T 2okc_A          157 RPLIQAMVDCINP--QMGETVCDPACGTGGFLLTAY  190 (445)
T ss_dssp             HHHHHHHHHHHCC--CTTCCEEETTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCC--CCCCEEeccCCCcchHHHHHH
Confidence            4556666654421  234589999999998876553

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=80.14  E-value=0.28  Score=41.87  Aligned_cols=39  Identities=15%  Similarity=-0.043  Sum_probs=27.0

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      .-++|++.+.-+..-|. + ....+|||+|||+|..+-.|.
T Consensus        82 ~~~vQd~ss~l~a~~L~-~-~~g~~VLDlgaGpG~kt~~LA  120 (464)
T 3m6w_A           82 LYYIQEPSAQAVGVLLD-P-KPGERVLDLAAAPGGKTTHLA  120 (464)
T ss_dssp             SEEECCTTTHHHHHHHC-C-CTTCEEEESSCTTCHHHHHHH
T ss_pred             eEEEECHHHHHHHHhcC-c-CCCCEEEEEcCCcCHHHHHHH
Confidence            44566666665555443 2 246799999999998887775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.39
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.23
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.98
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.97
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.89
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.81
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.71
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	96.63
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.56
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.54
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.5
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.46
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.26
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.0
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.99
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	95.97
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.88
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	95.84
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	95.63
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	95.62
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.61
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	95.55
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.35
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	95.3
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.22
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.19
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.14
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	95.14
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	94.94
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	94.89
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	94.69
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	94.69
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	94.51
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	94.4
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	94.25
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	94.24
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	94.19
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	93.99
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	93.91
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	93.9
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	93.74
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.54
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	93.47
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	93.36
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	93.33
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	92.95
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	92.93
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	92.83
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	92.74
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	92.33
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	91.93
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	91.57
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	91.06
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	90.96
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	90.75
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	90.46
d2h00a1	250	Methyltransferase 10 domain containing protein MET	90.34
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	90.27
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	89.87
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	89.6
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	89.5
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	89.33
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	89.24
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	88.65
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	88.08
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	88.05
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	86.49
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	86.12
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	84.92
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	83.32
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	80.64

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=0.00012  Score=52.38  Aligned_cols=28  Identities=29%  Similarity=0.231  Sum_probs=22.7

Q ss_pred             HhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           86 EDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        86 ~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ........+|||+|||+|.++..|.+.+
T Consensus        37 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~   64 (246)
T d2avna1          37 EEYLKNPCRVLDLGGGTGKWSLFLQERG   64 (246)
T ss_dssp             HHHCCSCCEEEEETCTTCHHHHHHHTTT
T ss_pred             HHhcCCCCEEEEECCCCchhcccccccc
Confidence            3445567899999999999999997654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.23  E-value=0.00024  Score=50.05  Aligned_cols=44  Identities=20%  Similarity=0.034  Sum_probs=30.0

Q ss_pred             ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .....+.-.+.+.+=+...-+.-.+|||||||+|.++..|.+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~   59 (226)
T d1ve3a1          16 NSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG   59 (226)
T ss_dssp             TSHHHHHHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhh
Confidence            45555555666655443322345799999999999999997654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0011  Score=49.75  Aligned_cols=60  Identities=13%  Similarity=0.087  Sum_probs=39.0

Q ss_pred             cCcCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           48 VSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        48 ~~IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....+.+.+..+ .+- -.......+.+.+++.+.+++..   ...+|||||||+|.++..|.+.
T Consensus        46 ~~~~~~~~~~ar-~~~-l~~g~~~~l~~~~~~~l~~~~~~---~~~~iLDiGcG~G~~~~~l~~~  105 (268)
T d1p91a_          46 DPGDSAEMMQAR-RAF-LDAGHYQPLRDAIVAQLRERLDD---KATAVLDIGCGEGYYTHAFADA  105 (268)
T ss_dssp             CCSSSHHHHHHH-HHH-HTTTTTHHHHHHHHHHHHHHSCT---TCCEEEEETCTTSTTHHHHHHT
T ss_pred             CCCCCHHHHHHH-HHH-HHcCchHHHHHHHHHHHHHhcCC---CCCEEEEeCCCCcHHHHHHHHH
Confidence            345566655433 111 11334567777777777765543   5779999999999999888654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.97  E-value=0.00017  Score=51.58  Aligned_cols=23  Identities=13%  Similarity=-0.090  Sum_probs=19.8

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..|.+.+
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~   37 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFV   37 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS
T ss_pred             CcCEEEEecccCcHHHHHHHHhC
Confidence            45799999999999999987664

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.89  E-value=0.00048  Score=50.20  Aligned_cols=36  Identities=11%  Similarity=0.139  Sum_probs=25.6

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ++-+.+-+..-...+.+|||||||+|.++..|.+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g   59 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF   59 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC
Confidence            344444444433456789999999999999997765

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.81  E-value=0.00012  Score=50.21  Aligned_cols=23  Identities=13%  Similarity=-0.116  Sum_probs=19.5

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||+|||+|..+..|.+.|
T Consensus        20 ~~~rvLd~GCG~G~~a~~la~~G   42 (201)
T d1pjza_          20 PGARVLVPLCGKSQDMSWLSGQG   42 (201)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHC
T ss_pred             CCCEEEEecCcCCHHHHHHHHcC
Confidence            45699999999999999887654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.71  E-value=0.00067  Score=49.12  Aligned_cols=23  Identities=13%  Similarity=0.026  Sum_probs=20.1

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .-.+|||||||+|.++..|.+.+
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~   38 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYV   38 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhC
Confidence            56799999999999999997654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.00035  Score=49.43  Aligned_cols=20  Identities=10%  Similarity=-0.084  Sum_probs=17.1

Q ss_pred             CCeEEEEccCccHHHHHHhc
Q 032981           92 FPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~  111 (129)
                      -.+|||||||+|.++..+.+
T Consensus        37 ~~~vLDiGcG~G~~~~~~~~   56 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLKI   56 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHTC
T ss_pred             CCeEEEECCCCcccccccce
Confidence            34799999999999998865

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.0012  Score=47.51  Aligned_cols=21  Identities=24%  Similarity=0.037  Sum_probs=17.4

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .-.+|||||||||..+..|.+
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~   59 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARR   59 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHH
T ss_pred             CCCEEEEeccchhhHHHHHHH
Confidence            456899999999999887753

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.54  E-value=0.00086  Score=47.56  Aligned_cols=23  Identities=17%  Similarity=-0.036  Sum_probs=19.8

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.+|||||||+|..+..|.++|
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g   52 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANG   52 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT
T ss_pred             CCCcEEEECCCCCHHHHHHHHHh
Confidence            46799999999999999987654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.50  E-value=0.0014  Score=48.85  Aligned_cols=36  Identities=22%  Similarity=0.228  Sum_probs=24.2

Q ss_pred             HHHHHHhhhHhhh--ccCCeEEEEccCccHHHHHHhcc
Q 032981           77 VAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        77 VAerL~DRL~~Ik--R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+.|.++|....  ....+|||||||+|.++..|.+.
T Consensus        51 ~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~   88 (282)
T d2o57a1          51 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRK   88 (282)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhcc
Confidence            3344445444322  24579999999999998888653

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.46  E-value=0.0014  Score=47.47  Aligned_cols=23  Identities=17%  Similarity=0.040  Sum_probs=19.9

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++..|.+.+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g   42 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF   42 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC
Confidence            46789999999999999997654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0018  Score=47.20  Aligned_cols=37  Identities=16%  Similarity=-0.017  Sum_probs=25.0

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..+..+.|.+.+..  ....+|||||||+|.++..|.+.
T Consensus        18 ~~~~~~~l~~~~~l--~pg~~VLDiGCG~G~~~~~la~~   54 (245)
T d1nkva_          18 TEEKYATLGRVLRM--KPGTRILDLGSGSGEMLCTWARD   54 (245)
T ss_dssp             CHHHHHHHHHHTCC--CTTCEEEEETCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCC--CCCCEEEEEcCCCCHHHHHHHHh
Confidence            44445555554433  23568999999999998888553

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.00  E-value=0.0024  Score=48.52  Aligned_cols=33  Identities=15%  Similarity=-0.017  Sum_probs=24.2

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +++-|....+...+|||+|||+|.++-.+.+.|
T Consensus       110 ~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g  142 (254)
T d2nxca1         110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG  142 (254)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT
T ss_pred             HHHHHHhhcCccCEEEEcccchhHHHHHHHhcC
Confidence            334444555678899999999999988776544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.99  E-value=0.0018  Score=46.53  Aligned_cols=23  Identities=17%  Similarity=-0.044  Sum_probs=18.7

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||||..+..|.+.+
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~   63 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERG   63 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCCccchhhcccc
Confidence            35579999999999998886543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.97  E-value=0.0021  Score=49.13  Aligned_cols=36  Identities=28%  Similarity=0.164  Sum_probs=26.0

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ...-+.|.++|. + ....+|||||||+|.++..+.+.
T Consensus        38 ~~k~~~~~~~l~-l-~~g~~VLDiGCG~G~~a~~~a~~   73 (280)
T d2fk8a1          38 YAKVDLNLDKLD-L-KPGMTLLDIGCGWGTTMRRAVER   73 (280)
T ss_dssp             HHHHHHHHTTSC-C-CTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-C-CCCCEEEEecCCchHHHHHHHHh
Confidence            344566777664 3 35789999999999998877543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.88  E-value=0.0027  Score=45.15  Aligned_cols=33  Identities=15%  Similarity=0.112  Sum_probs=24.0

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .+-|++.|..  ....+|||+|||+|.++-.+.+.
T Consensus        41 t~lLi~~l~~--~~~~~VLDiGcG~G~~~~~la~~   73 (194)
T d1dusa_          41 TKILVENVVV--DKDDDILDLGCGYGVIGIALADE   73 (194)
T ss_dssp             HHHHHHHCCC--CTTCEEEEETCTTSHHHHHHGGG
T ss_pred             HHHHHHhCCc--CCCCeEEEEeecCChhHHHHHhh
Confidence            3445555543  24779999999999998888654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0015  Score=47.19  Aligned_cols=20  Identities=15%  Similarity=0.046  Sum_probs=15.6

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ...++||||||+|.++..+.
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~   70 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAA   70 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTG
T ss_pred             CCCEEEEECCCCCHhHHHHh
Confidence            45689999999997765553

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0043  Score=45.93  Aligned_cols=33  Identities=18%  Similarity=0.067  Sum_probs=23.1

Q ss_pred             HHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        79 erL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      -.|++-|..-.+..++|||+|||+|+.+..|.+
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~   96 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFAR   96 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Confidence            345555543334567999999999998877643

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.62  E-value=0.004  Score=47.94  Aligned_cols=38  Identities=18%  Similarity=-0.053  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      --|+...+.|.++|. + ....+|||||||.|.++-.+.+
T Consensus        45 eAQ~~k~~~~~~~l~-l-~~G~~VLDiGCG~G~~a~~~a~   82 (285)
T d1kpga_          45 EAQIAKIDLALGKLG-L-QPGMTLLDVGCGWGATMMRAVE   82 (285)
T ss_dssp             HHHHHHHHHHHTTTT-C-CTTCEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-C-CCCCEEEEecCcchHHHHHHHh
Confidence            344556677777775 3 3578999999999988876643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.61  E-value=0.0066  Score=42.80  Aligned_cols=38  Identities=24%  Similarity=0.121  Sum_probs=27.1

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+||-.-++..|.-  +.-++|||+|||+|.++-.|...+
T Consensus        18 ~~eir~~il~~l~~--~~g~~VLDiGcGsG~~s~~lA~~~   55 (186)
T d1l3ia_          18 AMEVRCLIMCLAEP--GKNDVAVDVGCGTGGVTLELAGRV   55 (186)
T ss_dssp             CHHHHHHHHHHHCC--CTTCEEEEESCTTSHHHHHHHTTS
T ss_pred             hHHHHHHHHHhcCC--CCCCEEEEEECCeEcccccccccc
Confidence            34565566665532  357899999999999988886543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.55  E-value=0.0032  Score=48.66  Aligned_cols=36  Identities=22%  Similarity=0.087  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      |+...+.|.|+|. + ..-.+|||||||.|.++..+.+
T Consensus        46 q~~k~~~~~~~l~-l-~~G~~VLDiGCG~G~~~~~~a~   81 (291)
T d1kpia_          46 QYAKRKLALDKLN-L-EPGMTLLDIGCGWGSTMRHAVA   81 (291)
T ss_dssp             HHHHHHHHHHTTC-C-CTTCEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-C-CCCCEEEEecCcchHHHHHHHH
Confidence            4455666777764 2 3578999999999998887753

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=95.35  E-value=0.0039  Score=46.87  Aligned_cols=21  Identities=10%  Similarity=-0.075  Sum_probs=18.3

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+.+|||+|||+|.++..|.+
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~   47 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMP   47 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTT
T ss_pred             CcCEEEEecCcCCHHHHHHHH
Confidence            478999999999999888854

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.011  Score=43.54  Aligned_cols=36  Identities=14%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHH
Q 032981           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLL  109 (129)
Q Consensus        72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L  109 (129)
                      ++.+.+.+ +.+++...+. .-+|||||||+|.++..|
T Consensus        23 ~~~~~l~~-~l~~l~~~~~-~~~VLDiGcG~G~~~~~l   58 (280)
T d1jqea_          23 FMDKKLPG-IIGRIGDTKS-EIKILSIGGGAGEIDLQI   58 (280)
T ss_dssp             HHHHTHHH-HTTTTTTTCS-EEEEEEETCTTSHHHHHH
T ss_pred             HHHHHHHH-HHHHhccCCC-CCeEEEEcCCCCHHHHHH
Confidence            44433333 4455555432 227999999999876554

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=95.22  E-value=0.004  Score=45.59  Aligned_cols=23  Identities=17%  Similarity=-0.062  Sum_probs=18.3

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....+|||||||+|..+..+.+.
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~   45 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERA   45 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH
T ss_pred             CCcCEEEEecccCcHHHHHHHHc
Confidence            34678999999999887777543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.19  E-value=0.0075  Score=43.97  Aligned_cols=32  Identities=9%  Similarity=0.074  Sum_probs=23.1

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...|.+.|. ++ ..++|||||||+|+.+..|.+
T Consensus        64 ~a~~l~~l~-l~-~g~~VLdiG~GtG~~s~~la~   95 (213)
T d1dl5a1          64 MALFMEWVG-LD-KGMRVLEIGGGTGYNAAVMSR   95 (213)
T ss_dssp             HHHHHHHTT-CC-TTCEEEEECCTTSHHHHHHHH
T ss_pred             hHHHHHhhh-cc-ccceEEEecCccchhHHHHHH
Confidence            334555553 33 577999999999998887753

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.14  E-value=0.0094  Score=44.44  Aligned_cols=22  Identities=9%  Similarity=-0.102  Sum_probs=19.0

Q ss_pred             CCeEEEEccCccHHHHHHhccC
Q 032981           92 FPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+|||+|||+|.++..|.+.|
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~g   78 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEEG   78 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHTT
T ss_pred             CCEEEEecCCCcHHHHHHHHcC
Confidence            4589999999999999987654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0079  Score=43.70  Aligned_cols=23  Identities=9%  Similarity=-0.012  Sum_probs=19.4

Q ss_pred             ccCCeEEEEccCccHHHHHHhcc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ....+|||||||+|..+..+.+.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~   74 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEA   74 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTS
T ss_pred             cCCCeEEEeeccchHHHHHHHHc
Confidence            45679999999999999988654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.94  E-value=0.014  Score=42.86  Aligned_cols=43  Identities=5%  Similarity=-0.213  Sum_probs=25.7

Q ss_pred             cCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        66 ~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +|.-..-|-.++...+. .+.++  ...+|||+|||+|.++-.+..
T Consensus        26 Qy~T~~~~a~~~~~~~~-~~~dl--~Gk~VLDlGcGtG~l~i~a~~   68 (197)
T d1ne2a_          26 QYPTDASTAAYFLIEIY-NDGNI--GGRSVIDAGTGNGILACGSYL   68 (197)
T ss_dssp             -CCCCHHHHHHHHHHHH-HHTSS--BTSEEEEETCTTCHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHH-HcCCC--CCCEEEEeCCCCcHHHHHHHH
Confidence            35555555444443333 23443  577999999999988655443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0073  Score=43.24  Aligned_cols=19  Identities=21%  Similarity=0.238  Sum_probs=16.4

Q ss_pred             CCeEEEEccCccHHHHHHh
Q 032981           92 FPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~  110 (129)
                      ..+|||||||+|.++..|.
T Consensus        61 ~~~vLDiGcG~G~~~~~l~   79 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLL   79 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTT
T ss_pred             CCEEEEeccCCCHhhHHHH
Confidence            4689999999999998764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=94.69  E-value=0.0077  Score=44.31  Aligned_cols=33  Identities=12%  Similarity=0.105  Sum_probs=23.4

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ++.+.+.++.  ....+|||||||+|.++..|.+.
T Consensus        69 ~~~~~~~~d~--~~~~~VLDvGcG~G~~~~~la~~  101 (253)
T d1tw3a2          69 FDAPAAAYDW--TNVRHVLDVGGGKGGFAAAIARR  101 (253)
T ss_dssp             THHHHHHSCC--TTCSEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHhhcCC--ccCCEEEEeCCCCCHHHHHHHHh
Confidence            4555554433  34678999999999998888543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.69  E-value=0.019  Score=41.56  Aligned_cols=23  Identities=9%  Similarity=-0.266  Sum_probs=17.6

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +..+|||+|||+|.++-.+...|
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g   68 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLG   68 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT
T ss_pred             CCCEEEECcCcchHHHHHHHHcC
Confidence            46789999999999876554443

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.51  E-value=0.014  Score=43.25  Aligned_cols=31  Identities=16%  Similarity=0.055  Sum_probs=22.6

Q ss_pred             HHHhhhH-hhhccCCeEEEEccCccHHHHHHhc
Q 032981           80 NLLDRLE-DCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        80 rL~DRL~-~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .|++-|. ++ +.-++|||||||+|+.+..|.+
T Consensus        69 ~~l~~L~~~l-~~g~~VLeIGtGsGY~ta~la~  100 (223)
T d1r18a_          69 FALEYLRDHL-KPGARILDVGSGSGYLTACFYR  100 (223)
T ss_dssp             HHHHHTTTTC-CTTCEEEEESCTTSHHHHHHHH
T ss_pred             HHHHHHhhcc-CCCCeEEEecCCCCHHHHHHHH
Confidence            4555553 33 3568999999999999887743

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.40  E-value=0.017  Score=43.02  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=23.0

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      .|++.|+ + +...+|||||||+|+++..|.+.
T Consensus        61 ~ml~~L~-l-~~g~~VLdIG~GsGy~ta~La~l   91 (224)
T d1vbfa_          61 FMLDELD-L-HKGQKVLEIGTGIGYYTALIAEI   91 (224)
T ss_dssp             HHHHHTT-C-CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHhh-h-cccceEEEecCCCCHHHHHHHHH
Confidence            3555553 3 35779999999999999888654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.25  E-value=0.014  Score=42.68  Aligned_cols=22  Identities=9%  Similarity=0.040  Sum_probs=18.1

Q ss_pred             ccCCeEEEEccCccHHHHHHhc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .+-+.+||||||+|..+-.|.+
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~   49 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAK   49 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCceEEEEEecCcHHHHHHHH
Confidence            3456899999999998888754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.0074  Score=43.59  Aligned_cols=23  Identities=4%  Similarity=-0.198  Sum_probs=19.5

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||+|||+|..+..|.+.|
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~~G   67 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFADRG   67 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTT
T ss_pred             CCCEEEEeCCCCcHHHHHHHhCC
Confidence            45689999999999999997654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.19  E-value=0.011  Score=45.17  Aligned_cols=23  Identities=9%  Similarity=-0.062  Sum_probs=18.9

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++-.+.+.|
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~G   60 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHG   60 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC
Confidence            35789999999999988776554

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=93.99  E-value=0.017  Score=43.13  Aligned_cols=36  Identities=8%  Similarity=0.122  Sum_probs=25.5

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+.+++.+-+. + ..-+.||+||||+|.++..|.+.+
T Consensus         8 ~i~~~iv~~~~-~-~~~d~VlEIGpG~G~LT~~Ll~~~   43 (235)
T d1qama_           8 HNIDKIMTNIR-L-NEHDNIFEIGSGKGHFTLELVQRC   43 (235)
T ss_dssp             HHHHHHHTTCC-C-CTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             HHHHHHHHhcC-C-CCCCeEEEECCCchHHHHHHHhCc
Confidence            34555554432 1 357899999999999999996543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.91  E-value=0.015  Score=42.46  Aligned_cols=21  Identities=19%  Similarity=0.107  Sum_probs=17.5

Q ss_pred             cCCeEEEEccCccHHHHHHhc
Q 032981           91 TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ...+|||||||+|..+..|.+
T Consensus        56 pg~~VLDlGcG~G~~~~~la~   76 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLAD   76 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCcCCHHHHHHHH
Confidence            467999999999988887753

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.90  E-value=0.011  Score=44.02  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=25.5

Q ss_pred             HHHHHHHhhhHhhhcc-CCeEEEEccCccHHHHHHhcc
Q 032981           76 AVAENLLDRLEDCRKT-FPTALCLGGSLEAVRRLLRGR  112 (129)
Q Consensus        76 eVAerL~DRL~~IkR~-f~~aLDLGcgtG~l~~~L~~~  112 (129)
                      ..|.-+..-|..+.-. -.+|||||||+|..+..|...
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~   95 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADI   95 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHH
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHh
Confidence            3444455555555443 568999999999988888643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.016  Score=43.85  Aligned_cols=22  Identities=9%  Similarity=-0.076  Sum_probs=18.0

Q ss_pred             CCeEEEEccCccHHHHHHhccC
Q 032981           92 FPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        92 f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+|||||||+|.++-.+.+.|
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~G   57 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAG   57 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT
T ss_pred             cCEEEEECCCCCHHHHHHHHcC
Confidence            5689999999999887776554

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.54  E-value=0.018  Score=43.90  Aligned_cols=23  Identities=9%  Similarity=-0.065  Sum_probs=18.5

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...+|||||||+|.++-.+.+.|
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~G   55 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAG   55 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT
T ss_pred             CcCEEEEEecCCcHHHHHHHHhC
Confidence            35789999999999887776554

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=93.47  E-value=0.042  Score=40.56  Aligned_cols=20  Identities=20%  Similarity=0.200  Sum_probs=16.7

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ...+|||+|||+|.++..|.
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll  112 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLL  112 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTH
T ss_pred             CCCeEEEecccCChhhHHHH
Confidence            45689999999999988653

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.36  E-value=0.025  Score=41.23  Aligned_cols=22  Identities=14%  Similarity=0.093  Sum_probs=17.9

Q ss_pred             ccCCeEEEEccCccHHHHHHhc
Q 032981           90 KTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        90 R~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ..-+.+||||||+|..+-.+.+
T Consensus        30 ~~~plvLdIGcG~G~~~~~lA~   51 (204)
T d1yzha1          30 NDNPIHVEVGSGKGAFVSGMAK   51 (204)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHH
T ss_pred             CCCCeEEEEeccCCHHHHHHHH
Confidence            4556899999999988887754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.33  E-value=0.017  Score=46.87  Aligned_cols=34  Identities=12%  Similarity=-0.008  Sum_probs=23.7

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ....+|.+++..  ..-+++||||||+|.++-.+.+
T Consensus       203 ~~i~~Il~~l~L--kpgd~fLDLGCG~G~~vl~aA~  236 (406)
T d1u2za_         203 NFLSDVYQQCQL--KKGDTFMDLGSGVGNCVVQAAL  236 (406)
T ss_dssp             HHHHHHHHHTTC--CTTCEEEEESCTTSHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CCCCEEEeCCCCCcHHHHHHHH
Confidence            334556666632  2457899999999988877654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=92.95  E-value=0.0095  Score=45.01  Aligned_cols=35  Identities=17%  Similarity=0.148  Sum_probs=24.7

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      +.+.+.+.+..  ..-+.|||||||+|.++..|.+.+
T Consensus        17 ii~kIv~~~~~--~~~d~VLEIGpG~G~LT~~L~~~~   51 (245)
T d1yuba_          17 VLNQIIKQLNL--KETDTVYEIGTGKGHLTTKLAKIS   51 (245)
T ss_dssp             THHHHHHHCCC--CSSEEEEECSCCCSSCSHHHHHHS
T ss_pred             HHHHHHHhcCC--CCCCeEEEECCCccHHHHHHHhhc
Confidence            44556554432  245689999999999999986544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=92.93  E-value=0.026  Score=41.83  Aligned_cols=32  Identities=16%  Similarity=0.077  Sum_probs=23.2

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ++.+.+.++.  ....+|||||||+|.++..|.+
T Consensus        70 ~~~~~~~~d~--~~~~~vlDvG~G~G~~~~~l~~  101 (256)
T d1qzza2          70 YEAPADAYDW--SAVRHVLDVGGGNGGMLAAIAL  101 (256)
T ss_dssp             THHHHHTSCC--TTCCEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHhcCCC--ccCCEEEEECCCCCHHHHHHHH
Confidence            4555555432  2467899999999999988854

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.038  Score=41.72  Aligned_cols=37  Identities=14%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      .+.+.+.+-+..  ...+.||+||||+|.++..|.+.++
T Consensus         8 ~~~~~Iv~~~~~--~~~d~vlEIGpG~G~LT~~Ll~~~~   44 (252)
T d1qyra_           8 FVIDSIVSAINP--QKGQAMVEIGPGLAALTEPVGERLD   44 (252)
T ss_dssp             HHHHHHHHHHCC--CTTCCEEEECCTTTTTHHHHHTTCS
T ss_pred             HHHHHHHHhcCC--CCCCEEEEECCCchHHHHHHHccCC
Confidence            345555554422  2367899999999999999976543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.029  Score=43.27  Aligned_cols=34  Identities=12%  Similarity=0.173  Sum_probs=22.7

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ....+|.+.+. + ..-+++||||||+|.+.-.+..
T Consensus       138 ~~~~~~~~~~~-l-~~~~~vlD~GcG~G~~~~~~a~  171 (328)
T d1nw3a_         138 DLVAQMIDEIK-M-TDDDLFVDLGSGVGQVVLQVAA  171 (328)
T ss_dssp             HHHHHHHHHSC-C-CTTCEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHHHHcC-C-CCCCEEEEcCCCCCHHHHHHHH
Confidence            33445555543 2 2467999999999988776643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=92.33  E-value=0.095  Score=36.59  Aligned_cols=23  Identities=13%  Similarity=-0.296  Sum_probs=16.7

Q ss_pred             cCCeEEEEccCccHHHHHHhccC
Q 032981           91 TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ...++||+|||+|.++-....+|
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~g   63 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASEG   63 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT
T ss_pred             CCCeEEEeccccchhhhhhhhcc
Confidence            35689999999998765443333

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.93  E-value=0.065  Score=39.43  Aligned_cols=30  Identities=13%  Similarity=0.025  Sum_probs=22.0

Q ss_pred             HHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .|++-|+ ++ .-.+|||||||+|+.+..|..
T Consensus        69 ~ml~~L~-l~-~g~~VLeIGsGsGY~taila~   98 (215)
T d1jg1a_          69 IMLEIAN-LK-PGMNILEVGTGSGWNAALISE   98 (215)
T ss_dssp             HHHHHHT-CC-TTCCEEEECCTTSHHHHHHHH
T ss_pred             HHHHhhc-cC-ccceEEEecCCCChhHHHHHH
Confidence            4444443 33 467999999999999988764

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.57  E-value=0.057  Score=41.75  Aligned_cols=39  Identities=13%  Similarity=0.142  Sum_probs=27.4

Q ss_pred             HHHHHHHHhhhHhhhc----cCCeEEEEccCccHHHHHHhccC
Q 032981           75 DAVAENLLDRLEDCRK----TFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR----~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      ..+++.+.|.+..-+.    ....|||||+|+|.++..|...+
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~   65 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY   65 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcC
Confidence            3566777776643221    34579999999999999986543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.06  E-value=0.091  Score=39.00  Aligned_cols=49  Identities=10%  Similarity=0.062  Sum_probs=31.9

Q ss_pred             HHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           55 LKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        55 ~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ...+.|++|-..      .....++.+.+.+.. -....++||||||+|.++..+.
T Consensus        52 ~~~~~F~~aM~~------~s~~~~~~l~~~~~~-f~~~~~vlDiGGG~G~~~~~l~  100 (244)
T d1fp1d2          52 KMNQIFNKSMVD------VCATEMKRMLEIYTG-FEGISTLVDVGGGSGRNLELII  100 (244)
T ss_dssp             HHHHHHHHHHHH------HHHHHHHHHHHHCCT-TTTCSEEEEETCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHH------HHHHHHHHHHHhccc-ccCCcEEEEecCCCcHHHHHHH
Confidence            444567776541      223455666665542 2346789999999999888774

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.083  Score=38.86  Aligned_cols=19  Identities=11%  Similarity=0.022  Sum_probs=14.8

Q ss_pred             hccCCeEEEEccCccHHHH
Q 032981           89 RKTFPTALCLGGSLEAVRR  107 (129)
Q Consensus        89 kR~f~~aLDLGcgtG~l~~  107 (129)
                      .....++||||||+|....
T Consensus        52 ~~~g~~vLDiGcG~g~~~~   70 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQL   70 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGG
T ss_pred             CCCCcEEEEeccCCCHHHH
Confidence            3456799999999996543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.75  E-value=0.093  Score=36.40  Aligned_cols=33  Identities=15%  Similarity=0.047  Sum_probs=24.1

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      .|++-|.+-+..  ....+|||.|||+|.+...+.
T Consensus         6 ~i~~~m~~l~~~--~~~~~IlDp~~G~G~fl~~~~   38 (223)
T d2ih2a1           6 EVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFR   38 (223)
T ss_dssp             HHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHH
T ss_pred             HHHHHHHHhcCC--CCcCEEEECCCchHHHHHHHH
Confidence            567777765432  246799999999999876664

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.46  E-value=0.062  Score=39.73  Aligned_cols=32  Identities=13%  Similarity=0.142  Sum_probs=22.8

Q ss_pred             HHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981           80 NLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        80 rL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      -++.-|+.+.- .-.+|||||||+|..+..|.+
T Consensus        61 ~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~   93 (227)
T d1g8aa_          61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSD   93 (227)
T ss_dssp             HHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHH
T ss_pred             HHHccccccccCCCCEEEEeccCCCHHHHHHHH
Confidence            34444554443 457999999999998888753

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.11  Score=38.68  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=23.2

Q ss_pred             HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      .+..+++.......+....++||||||+|.+.-.|.
T Consensus        45 ~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~   80 (250)
T d2h00a1          45 IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLG   80 (250)
T ss_dssp             HHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHH
T ss_pred             HHHHHHHhhhhccCccccceEEEeCCCchHHHHHHH
Confidence            344444543333333445689999999998887764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=90.27  E-value=0.074  Score=40.03  Aligned_cols=20  Identities=10%  Similarity=-0.051  Sum_probs=17.2

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      ...+|||+|||+|.++..|.
T Consensus        85 pG~rVLEiG~GsG~lt~~la  104 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYIL  104 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHH
T ss_pred             CcCEEEEeeeeCcHHHHHHH
Confidence            46799999999999887774

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=89.87  E-value=0.083  Score=39.84  Aligned_cols=28  Identities=18%  Similarity=0.065  Sum_probs=21.3

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      |..+|+ + +...+|||+|||+|.++..|.
T Consensus        95 Ii~~l~-i-~pG~~VLDiG~GsG~lt~~lA  122 (266)
T d1o54a_          95 IAMMLD-V-KEGDRIIDTGVGSGAMCAVLA  122 (266)
T ss_dssp             HHHHTT-C-CTTCEEEEECCTTSHHHHHHH
T ss_pred             HHHhhC-C-CCCCEEEECCCCCCHHHHHHH
Confidence            555553 3 368899999999999888774

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=89.60  E-value=0.16  Score=37.17  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=23.5

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      .++.+.+-... ...+.++||||||+|.++..|.+
T Consensus        68 ~~~~~~~~~~~-~~~~~~vvDvGGG~G~~~~~l~~  101 (243)
T d1kyza2          68 TMKKILETYTG-FEGLKSLVDVGGGTGAVINTIVS  101 (243)
T ss_dssp             HHHHHHHHCCT-TSSCSEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHHhccc-ccCCcEEEEecCCCcHHHHHHHH
Confidence            44555554333 23477899999999999888743

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=89.50  E-value=0.14  Score=38.89  Aligned_cols=24  Identities=21%  Similarity=0.069  Sum_probs=18.8

Q ss_pred             hhccCCeEEEEccCccHHHHHHhc
Q 032981           88 CRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        88 IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      ++....++||+|||+|.++-.|..
T Consensus       105 ~~~~~~~vlDlGtGSG~I~i~la~  128 (274)
T d2b3ta1         105 LPEQPCRILDLGTGTGAIALALAS  128 (274)
T ss_dssp             SCSSCCEEEEETCTTSHHHHHHHH
T ss_pred             hcccccceeeeehhhhHHHHHHHh
Confidence            444567899999999998877743

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.11  Score=39.81  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=25.2

Q ss_pred             HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV  113 (129)
Q Consensus        76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g  113 (129)
                      .+++.+.+-+. +. .-+.||+||+|+|.++..|.+.+
T Consensus         8 ~i~~kIv~~~~-~~-~~d~VlEIGPG~G~LT~~Ll~~~   43 (278)
T d1zq9a1           8 LIINSIIDKAA-LR-PTDVVLEVGPGTGNMTVKLLEKA   43 (278)
T ss_dssp             HHHHHHHHHTC-CC-TTCEEEEECCTTSTTHHHHHHHS
T ss_pred             HHHHHHHHHhC-CC-CCCEEEEECCCchHHHHHHHhcC
Confidence            45555554432 22 35689999999999999996654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=89.24  E-value=0.088  Score=40.62  Aligned_cols=58  Identities=14%  Similarity=0.028  Sum_probs=34.5

Q ss_pred             CCHHHHHHHHhHhhhc--CCC-ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981           51 FDRHLKRKQRDRAAWL--TRP-NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        51 FDR~~vr~~r~RAA~~--y~~-~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      .||...+....|.+..  |-. ..|=..    .|.+|- .++ .-..|+|||||+|.+++.+....+
T Consensus        29 ~dr~~a~~~~~~~~~~~~~~SR~~~Kl~----~~~~~~-~~~-~~~~vvDlG~~pGgws~~~a~~~~   89 (257)
T d2p41a1          29 VDRTLAKEGIKRGETDHHAVSRGSAKLR----WFVERN-LVT-PEGKVVDLGCGRGGWSYYCGGLKN   89 (257)
T ss_dssp             EECHHHHHHHHTTCCSSCCSSTHHHHHH----HHHHTT-SSC-CCEEEEEETCTTSHHHHHHHTSTT
T ss_pred             hhhHHHHHHHHhccccCCCcchHHHHHH----HHHHhc-Ccc-CCCeEEEecCCCChHHHHHHhhcC
Confidence            4666666666665432  111 223322    345553 443 344899999999999999865543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=88.65  E-value=0.15  Score=36.23  Aligned_cols=29  Identities=14%  Similarity=-0.006  Sum_probs=21.3

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      |.++...+ +.-..+|||||++|.|++.+.
T Consensus        13 I~~k~~l~-k~~~~vlDLg~aPGgw~q~~~   41 (180)
T d1ej0a_          13 IQQSDKLF-KPGMTVVDLGAAPGGWSQYVV   41 (180)
T ss_dssp             HHHHHCCC-CTTCEEEEESCTTCHHHHHHH
T ss_pred             HHHHhCcc-CCCCeEEEEeccCCcceEEEE
Confidence            44454444 345689999999999999764

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.08  E-value=0.15  Score=34.57  Aligned_cols=17  Identities=12%  Similarity=-0.183  Sum_probs=14.4

Q ss_pred             cCCeEEEEccCccHHHH
Q 032981           91 TFPTALCLGGSLEAVRR  107 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~  107 (129)
                      +-.+|||+|||+|.++=
T Consensus        14 ~g~~vlDl~~GtG~~~i   30 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAI   30 (152)
T ss_dssp             CSCEEEEETCTTCHHHH
T ss_pred             CCCeEEEcCCccCHHHH
Confidence            45689999999998874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.05  E-value=0.14  Score=38.83  Aligned_cols=32  Identities=19%  Similarity=0.029  Sum_probs=23.1

Q ss_pred             HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      -+.-+..+| +++ ...+|||+|||+|.++-.|.
T Consensus        84 D~s~Ii~~l-~i~-PG~~VLE~G~GsG~lt~~La  115 (264)
T d1i9ga_          84 DAAQIVHEG-DIF-PGARVLEAGAGSGALTLSLL  115 (264)
T ss_dssp             HHHHHHHHT-TCC-TTCEEEEECCTTSHHHHHHH
T ss_pred             HHHHHHHHh-CCC-CCCEEEecCcCCcHHHHHHH
Confidence            344455555 333 57899999999999988774

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=0.18  Score=39.16  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=20.9

Q ss_pred             HHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~  110 (129)
                      +...| +|+ ...+|||+|||+|.++-.|.
T Consensus        90 Il~~l-~i~-pG~rVLE~GtGsG~lt~~LA  117 (324)
T d2b25a1          90 ILSMM-DIN-PGDTVLEAGSGSGGMSLFLS  117 (324)
T ss_dssp             HHHHH-TCC-TTCEEEEECCTTSHHHHHHH
T ss_pred             HHHHh-CCC-CCCEEEEecccccHHHHHHH
Confidence            44344 433 57899999999999988775

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=86.12  E-value=0.37  Score=33.66  Aligned_cols=20  Identities=15%  Similarity=-0.130  Sum_probs=15.8

Q ss_pred             cCCeEEEEccCccHHHH-HHh
Q 032981           91 TFPTALCLGGSLEAVRR-LLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~-~L~  110 (129)
                      ...++||++||+|.+.= ++.
T Consensus        43 ~~~~vLDlfaGsG~~gieals   63 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALS   63 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHH
T ss_pred             chhhhhhhhccccceeeeEEe
Confidence            45689999999999874 553

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=84.92  E-value=0.24  Score=36.49  Aligned_cols=33  Identities=12%  Similarity=0.083  Sum_probs=22.3

Q ss_pred             HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG  111 (129)
Q Consensus        78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~  111 (129)
                      +..+.+.. +.-....+++|||||+|.++..+.+
T Consensus        68 ~~~~~~~~-~~~~~~~~vvDvGGG~G~~~~~l~~  100 (244)
T d1fp2a2          68 NLALRDCD-FVFDGLESIVDVGGGTGTTAKIICE  100 (244)
T ss_dssp             HHHHHTCH-HHHTTCSEEEEETCTTSHHHHHHHH
T ss_pred             hhhHhhhc-ccccCceEEEEecCCccHHHHHHHH
Confidence            34444432 2333567899999999999887743

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.32  E-value=0.22  Score=37.18  Aligned_cols=30  Identities=3%  Similarity=-0.138  Sum_probs=21.1

Q ss_pred             hHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981           85 LEDCRKTFPTALCLGGSLEAVRRLLRGRVV  114 (129)
Q Consensus        85 L~~IkR~f~~aLDLGcgtG~l~~~L~~~g~  114 (129)
                      +...-....+|||+|||+|.++=.+...+.
T Consensus       101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~  130 (260)
T d2frna1         101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGK  130 (260)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHTC
T ss_pred             HHhhcCCccEEEECcceEcHHHHHHHHhCC
Confidence            333334678999999999988766654443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.64  E-value=2.2  Score=30.38  Aligned_cols=20  Identities=15%  Similarity=-0.014  Sum_probs=17.2

Q ss_pred             cCCeEEEEccCccHHHHHHh
Q 032981           91 TFPTALCLGGSLEAVRRLLR  110 (129)
Q Consensus        91 ~f~~aLDLGcgtG~l~~~L~  110 (129)
                      .+.+||++||++|+.+-.|.
T Consensus        56 kpk~ILEiGt~~G~Sti~la   75 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMA   75 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHH
T ss_pred             CCCEEEEEccCchhHHHHHH
Confidence            58899999999998877664