Citrus Sinensis ID: 032984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MATPPVPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALLELTLIGFRS
Secondary Structure (PSIPRED)
cccccccEEEcccEEEEEEEEcccccccccccccccccccccccccccEEEccEEEcccccccEEEEEccccccccEEccccEEEEccccccEEEEEEccccEEEEEEEcccccccHHHEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEHEEEEEEEEcccccccccccccccccccccccccHHHHcccccEEccccccEEEEEEccccccccccccccEEEEccccccEEEEEEccccEEEEEEEcccccccHHHHHHHHEcccc
Coil and Loop (DISEMBL)
MATPPVPVVASLAKVKLFsimpssssssrsrpshslkskpalcapvkqeVEVGIMCescngkgwlvcdfcggqktnvkaqnnriyrrcptcravgyvlcskckvfkcvtfpnyddANALLELTLIGFRS
Flexible Loop (DISEMBL)
MATPPVPVVASLAKVKLFSIMPssssssrsrpshslkskpalcapVKQEVEVGIMCESCNGKGWLVCDFCGGQKTnvkaqnnriyrrcPTCRAVGYVLCSKCKVFKCVTFPNYDDANALLELTLIGFRS
Low Complexity Region (SEG)
MATPPVPVVASLAKVKLFSIMpssssssrsrpshslkskpALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALLELTLIGFRS
Disordered region (IsUnstruct)
**************VKL************************LCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALLELTLIGF**
Disordered Region (DISOPRED)
****PVP*VASLAKVKLFSIM*****************************EVGIMCESCNGKGWLVCDFCGGQKT*******RIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALLELTLIGFR*
Disordered Region (DISEMBL)
MATPPVPVVASLAKVKLFSI*******************PALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALLELTLIGFRS
Disordered Region (DISPRO)
**TPPVPVVASLAKVKLFSIMPS**************SKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALLELTLIGFRS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATPPVPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALLELTLIGFRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
225429842	101	PREDICTED: uncharacterized protein LOC10	0.744	0.950	0.689	1e-33
449442018	112	PREDICTED: uncharacterized protein LOC10	0.612	0.705	0.712	5e-27
297821739	126	hypothetical protein ARALYDRAFT_481294 [	0.775	0.793	0.570	9e-27
224121432	121	predicted protein [Populus trichocarpa]	0.759	0.809	0.580	1e-26
357466565	117	hypothetical protein MTR_3g109170 [Medic	0.798	0.880	0.567	1e-26
30682394	132	chaperone protein dnaJ-related protein [	0.635	0.621	0.634	1e-26
351723979	132	uncharacterized protein LOC100527416 [Gl	0.666	0.651	0.618	3e-25
116782334	116	unknown [Picea sitchensis]	0.775	0.862	0.519	3e-23
168042224	145	predicted protein [Physcomitrella patens	0.565	0.503	0.589	6e-20
357148471	133	PREDICTED: uncharacterized protein LOC10	0.519	0.503	0.544	9e-17

>gi|225429842|ref|XP_002283165.1| PREDICTED: uncharacterized protein LOC100249288 isoform 1 [Vitis vinifera] gi|296081792|emb|CBI20797.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 83/103 (80%), Gaps = 7/103 (6%)

Query: 20  IMPSSSSSSRSRPSHSLKSKPALCAPVKQ---EVEVGIMCESCNGKGWLVCDFCGGQKTN 76
           ++PSSSSS+          KP  CAP++Q   +++VGIMCE CNGKGWL+CDFC GQKTN
Sbjct: 1   MLPSSSSSTMGMRFL----KPPHCAPLQQIQEQIDVGIMCEPCNGKGWLLCDFCKGQKTN 56

Query: 77  VKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANAL 119
           VKA+NNRIYRRCP+CRA+GYVLCSKCKVFKCVTFPNYDD   L
Sbjct: 57  VKAENNRIYRRCPSCRAIGYVLCSKCKVFKCVTFPNYDDGEEL 99

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442018|ref|XP_004138779.1| PREDICTED: uncharacterized protein LOC101209431 [Cucumis sativus] gi|449499504|ref|XP_004160834.1| PREDICTED: uncharacterized LOC101209431 [Cucumis sativus]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 66/80 (82%), Gaps = 1/80 (1%)

Query: 41  ALCAPVKQ-EVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLC 99
           A C+P++Q + +  I CE CNGKGW+VCDFC GQKTNVK + NRIYRRCPTCRAVGYVLC
Sbjct: 31  ARCSPIQQVQADSTIDCEPCNGKGWIVCDFCEGQKTNVKVEKNRIYRRCPTCRAVGYVLC 90

Query: 100 SKCKVFKCVTFPNYDDANAL 119
           S CKVFKCVTFPN++D   L
Sbjct: 91  SNCKVFKCVTFPNFNDGADL 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821739|ref|XP_002878752.1| hypothetical protein ARALYDRAFT_481294 [Arabidopsis lyrata subsp. lyrata] gi|297324591|gb|EFH55011.1| hypothetical protein ARALYDRAFT_481294 [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 79/114 (69%), Gaps = 14/114 (12%)

Query: 18  FSIMPSSSSSSRSRPSHSLKSKPALCAPVKQ-----------EVEVGIMCESCNGKGWLV 66
             +MPSS+ S RS   H    KP  C P++Q           + E  I+CE CNGKGWL+
Sbjct: 15  LRLMPSSAPSPRS---HRCLLKPFRCVPLQQQEPQLEQSQQGDDEAVILCEDCNGKGWLI 71

Query: 67  CDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALL 120
           CD C GQKTNVK++NNRIYRRCPTC+AVG+VLC KCKVFKCVTFPN +D + L+
Sbjct: 72  CDVCNGQKTNVKSENNRIYRRCPTCKAVGFVLCRKCKVFKCVTFPNSEDGDELM 125

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121432|ref|XP_002330826.1| predicted protein [Populus trichocarpa] gi|222872628|gb|EEF09759.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 77/112 (68%), Gaps = 14/112 (12%)

Query: 19  SIMPSSSSSSRSRPSHSLKS------KPALCAP--------VKQEVEVGIMCESCNGKGW 64
           ++ P+  S  RS PS    +      KP  C+P         +Q+V  GIMCE CNGKGW
Sbjct: 5   TVAPAKISYLRSLPSWPANTTTPRFLKPVNCSPPLQQQVQEEQQQVASGIMCEPCNGKGW 64

Query: 65  LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDA 116
           L+CDFC G KTNVKA N R+YRRCP+CRA+GYVLCSKCKVFKCVTFPNY+D 
Sbjct: 65  LLCDFCKGLKTNVKADNKRLYRRCPSCRAIGYVLCSKCKVFKCVTFPNYNDG 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466565|ref|XP_003603567.1| hypothetical protein MTR_3g109170 [Medicago truncatula] gi|355492615|gb|AES73818.1| hypothetical protein MTR_3g109170 [Medicago truncatula]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 8/111 (7%)

Query: 6   VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWL 65
           +P ++S +  + F + P SS          ++S    C  V  E E  IMC+ CNGKGWL
Sbjct: 12  LPSISSSSHSRSFFVAPYSSK-------QHIRSITIKCVKVDTE-ETNIMCDPCNGKGWL 63

Query: 66  VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDA 116
           VCDFC GQKTNVKA NNRIYRRCP+C+AVGYVLCS CKVFKCVTFP+++D+
Sbjct: 64  VCDFCEGQKTNVKAPNNRIYRRCPSCKAVGYVLCSNCKVFKCVTFPHFNDS 114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682394|ref|NP_850052.1| chaperone protein dnaJ-related protein [Arabidopsis thaliana] gi|44917527|gb|AAS49088.1| At2g24395 [Arabidopsis thaliana] gi|62321035|dbj|BAD94100.1| hypothetical protein [Arabidopsis thaliana] gi|330252477|gb|AEC07571.1| chaperone protein dnaJ-related protein [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 71/93 (76%), Gaps = 11/93 (11%)

Query: 39  KPALCAPVK-QEVEVG----------IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRR 87
           KP  C P++ QE ++           I+CE CNGKGWL+CDFC GQKTNVK++NNRIYRR
Sbjct: 39  KPFRCVPLQEQEPQLDQSQQGDDNAVILCEDCNGKGWLLCDFCKGQKTNVKSENNRIYRR 98

Query: 88  CPTCRAVGYVLCSKCKVFKCVTFPNYDDANALL 120
           CPTC+AVG+VLC KCKVFKCVTFPN +D + LL
Sbjct: 99  CPTCKAVGFVLCRKCKVFKCVTFPNSEDGDELL 131

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723979|ref|NP_001235762.1| uncharacterized protein LOC100527416 [Glycine max] gi|255632296|gb|ACU16506.1| unknown [Glycine max]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 71/97 (73%), Gaps = 11/97 (11%)

Query: 21  MPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQ 80
           MP   S  ++ P HS  + P          + GI+ E CNG GWLVCDFC GQKTNVKA+
Sbjct: 44  MPWPCSLRQAPPLHSHSTTP----------QAGIVREPCNGTGWLVCDFCNGQKTNVKAE 93

Query: 81  NN-RIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDA 116
           NN RIYRRCP+C+AVGYVLCSKCKVFKCVTFPN++D+
Sbjct: 94  NNKRIYRRCPSCKAVGYVLCSKCKVFKCVTFPNFNDS 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782334|gb|ABK22469.1| unknown [Picea sitchensis]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 19  SIMPSSSSSSRSRPSHSLK-SKPALCAPVKQEVE-VGIMCESCNGKGWLVCDFCGGQKTN 76
           + +PS SS S SRP+ + + +  A   P +QEV+  GI+C+ C GKGW+VCDFC GQK N
Sbjct: 15  TALPSPSSWSNSRPAFTQRITCRASALPSQQEVKGAGILCDPCKGKGWVVCDFCEGQKIN 74

Query: 77  VKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANA 118
           V+AQ+ R YRRCP+CRA G+++C +CKV+KC+TFP+  D  +
Sbjct: 75  VQAQSKRFYRRCPSCRASGFLICQQCKVYKCLTFPDGKDGGS 116

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168042224|ref|XP_001773589.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675128|gb|EDQ61627.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 59/73 (80%)

Query: 44  APVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCK 103
           AP ++E ++ + C +CNGKG+L+CDFC GQKTNV+ + N+ YRRCP+CRAVG V+C +CK
Sbjct: 72  APAEEEGDMNLPCNTCNGKGFLLCDFCKGQKTNVQVRANKFYRRCPSCRAVGVVICPQCK 131

Query: 104 VFKCVTFPNYDDA 116
           V+KCVTFP+  D 
Sbjct: 132 VYKCVTFPDGVDG 144

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357148471|ref|XP_003574777.1| PREDICTED: uncharacterized protein LOC100830128 [Brachypodium distachyon]

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 49  EVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVLCSKCKVFKC 107
           E E  + C+ C G GWL+C FC G+K NVK++++ RIYRRCPTC+A GY+LC++C+V++C
Sbjct: 65  EEEGVVECQECGGAGWLLCGFCKGKKNNVKSESSPRIYRRCPTCKAAGYILCARCRVYRC 124

Query: 108 VTFPNYDD 115
           +TFP   D
Sbjct: 125 ITFPETAD 132

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:504955942	132	AT2G24395 "AT2G24395" [Arabido	0.519	0.507	0.791	4.4e-29
UNIPROTKB|P63966	382	dnaJ2 "Chaperone protein DnaJ	0.465	0.157	0.350	0.00018
TAIR|locus:2044812	186	EDA3 "embryo sac development a	0.379	0.263	0.357	0.00024
UNIPROTKB|G4N8Z4	59	MGG_17224 "Uncharacterized pro	0.333	0.728	0.404	0.00045
TAIR|locus:2019479	368	AT1G64500 [Arabidopsis thalian	0.472	0.165	0.359	0.00045
TAIR|locus:2009482	110	AT1G22630 [Arabidopsis thalian	0.348	0.409	0.367	0.00093

TAIR|locus:504955942 AT2G24395 "AT2G24395" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query:    54 IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNY 113
             I+CE CNGKGWL+CDFC GQKTNVK++NNRIYRRCPTC+AVG+VLC KCKVFKCVTFPN 
Sbjct:    65 ILCEDCNGKGWLLCDFCKGQKTNVKSENNRIYRRCPTCKAVGFVLCRKCKVFKCVTFPNS 124

Query:   114 DDANALL 120
             +D + LL
Sbjct:   125 EDGDELL 131

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P63966 dnaJ2 "Chaperone protein DnaJ 2" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 27/77 (35%), Positives = 37/77 (48%)

Query:    43 CAP--VKQ-EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRI-----YRRC 88
             CA    KQ  V+  ++C+ C GKG       + CD CGG+      Q + +      R C
Sbjct:   129 CATGVTKQVTVDTAVLCDRCQGKGTNGDSVPIPCDTCGGRGEVQTVQRSLLGQMLTSRPC 188

Query:    89 PTCRAVGYVL---CSKC 102
             PTCR VG V+   C +C
Sbjct:   189 PTCRGVGVVIPDPCQQC 205

GO:0005618 "cell wall" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

TAIR|locus:2044812 EDA3 "embryo sac development arrest 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00024, P = 0.00024
 Identities = 20/56 (35%), Positives = 27/56 (48%)

Query:    53 GIMCESCNGKGWLVCDFCGGQKTNVKAQNNR----IYR--RCPTCRAVGYVLCSKC 102
             G  C +C G G ++CD CGG     KA N +    +Y    CP C   G ++C  C
Sbjct:    99 GGSCRNCQGSGAVLCDMCGGTG-KWKALNRKRAKDVYEFTECPNCYGRGKLVCPVC 153

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009561 "megagametogenesis" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|G4N8Z4 MGG_17224 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query:    56 CESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKC 102
             C SC+G G   C  CGG  +++ A+       CP C A G V CS C
Sbjct:     9 CSSCSGTGQCTCLRCGGTGSDIFAECGI----CPHCYARGQVPCSAC 51

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019479 AT1G64500 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00045, P = 0.00045
 Identities = 23/64 (35%), Positives = 29/64 (45%)

Query:    44 APVKQEVEVG-IMCESCNGKGWLVCDFCGG--QKTNVKAQNNRIYRRCPTCRAVGYVLCS 100
             A V++  E G + CE C G  WL C  CGG  +   V A     + RC  C   G + C 
Sbjct:   304 ARVERVGEEGRLTCEGCGGARWLPCFECGGSCKVAAVGAAKGERWERCVKCNENGLIRCP 363

Query:   101 KCKV 104
              C V
Sbjct:   364 VCFV 367

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005884 "actin filament" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IDA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2009482 AT1G22630 [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 18/49 (36%), Positives = 23/49 (46%)

Query:    56 CESCNGKGWLVCDFCGGQKTNVKAQNNRIYRR--CPTCRAVGYVLCSKC 102
             CE+C  KG + C  C G   N K  N  ++ R  C  C+  G   C KC
Sbjct:    51 CETCGAKGAIECPGCKGTGKNKK--NGNMFERWKCFDCQGFGMKSCPKC 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.455    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      129       110   0.00091  102 3  11 22  0.38    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  134 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.84u 0.15s 9.99t   Elapsed:  00:00:00
  Total cpu time:  9.84u 0.15s 9.99t   Elapsed:  00:00:00
  Start:  Fri May 10 09:24:58 2013   End:  Fri May 10 09:24:58 2013

GO:0009507 "chloroplast" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032364001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (387 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-05
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-05
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	9e-05
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	2e-04
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	3e-04
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	8e-04
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	0.001
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	0.001
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	0.001
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	0.002

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 46  VKQEVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN---RIYRRCPTCRAVGY 96
           V  EV   + CE+C G G+       VC  CGG  +    Q     RI + CPTC   G 
Sbjct: 149 VSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGG--SGEIYQRGGFFRISQTCPTCGGEGV 206

Query: 97  V--LCSKCK 103
           +   CSKC 
Sbjct: 207 LREPCSKCN 215

Length = 382

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 16/73 (21%)

Query: 46  VKQEVEV--GIMCESCNGKGW------LVCDFCGGQKTNVKAQ-----NNRIYRRCPTCR 92
           V ++V V   ++C+ C+GKG       + CD CGG+      Q          R CPTCR
Sbjct: 130 VTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCR 189

Query: 93  AVGYVL---CSKC 102
            VG V+   C +C
Sbjct: 190 GVGEVIPDPCHEC 202

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 49  EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVLCSK 101
            ++    CE C+G G         C  CGG     ++Q    I   CP CR +G V+ S 
Sbjct: 140 RIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSP 199

Query: 102 CKVFKCV 108
           CK   C 
Sbjct: 200 CK--TCH 204

Length = 366

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 12/70 (17%)

Query: 46  VKQEVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN---RIYRRCPTCRAVGY 96
            +  V   + C +C+G G         C  C G       Q        + CPTC   G 
Sbjct: 135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGK 194

Query: 97  VL---CSKCK 103
           ++   C KCK
Sbjct: 195 IIKDPCGKCK 204

Length = 371

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 17/65 (26%)

Query: 46  VKQEVEVGIMCESCNGKG----WLVCDFCGGQKTNVKAQNNRIYRRCPTC--RAVGYV-- 97
           V       I C  C GKG    +  C  CGG    +          C  C    V +   
Sbjct: 46  VDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT---------CDICGDIIVPWEEG 96

Query: 98  LCSKC 102
           LC +C
Sbjct: 97  LCPEC 101

Length = 715

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 56  CESCNGKGWL------VCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCK 103
           C+ C G G         C  CGG     ++Q   +I   CP CR  G V+   C KCK
Sbjct: 147 CDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCK 204

Length = 373

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 56  CESCNGKGWLVCDFCGGQKTNV--KAQNNRIYRRCPTCRAVGYVLC 99
           CE C G  ++ C  C G        A     + RCP C   G V C
Sbjct: 102 CEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 21/76 (27%)

Query: 48  QEVEVGI----MCESCNG-------KGWLVCDFCGGQKTNVKAQNNRIY------RRCPT 90
           +EVEV +     CE C+G       K    C  C G    V+AQ   I+      + CPT
Sbjct: 130 EEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGA-VRAQARTIFGVVETQQPCPT 188

Query: 91  CRAVGYVL---CSKCK 103
           CR  G ++   C+ C+
Sbjct: 189 CRGEGQIITDPCTVCR 204

Length = 371

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 14/62 (22%)

Query: 56  CESCNGKG------WLVCDFCGGQKTNVKAQNN-----RIYRRCPTCRAVGYV---LCSK 101
           C  C+G G         C  C G    VK Q       ++ + CP C   G +    C  
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 102 CK 103
           CK
Sbjct: 61  CK 62

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 47  KQEVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-----RIYRRCPTCRAVG 95
           + E+     CE+C+G G         C  CGG     + Q       +  + CPTC   G
Sbjct: 137 EIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEG 196

Query: 96  YVL---CSKCK 103
            ++   CS CK
Sbjct: 197 KIIKEPCSTCK 207

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	99.67
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	99.61
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.0
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.75
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	98.7
PRK14279	392	chaperone protein DnaJ; Provisional	98.38
PRK14286	372	chaperone protein DnaJ; Provisional	98.34
PRK14285	365	chaperone protein DnaJ; Provisional	98.32
PRK14300	372	chaperone protein DnaJ; Provisional	98.31
PRK14301	373	chaperone protein DnaJ; Provisional	98.29
PRK14284	391	chaperone protein DnaJ; Provisional	98.28
PRK14298	377	chaperone protein DnaJ; Provisional	98.28
PRK10767	371	chaperone protein DnaJ; Provisional	98.27
PRK14295	389	chaperone protein DnaJ; Provisional	98.26
PRK14288	369	chaperone protein DnaJ; Provisional	98.25
KOG2813	406	consensus Predicted molecular chaperone, contains	98.23
PRK14294	366	chaperone protein DnaJ; Provisional	98.23
PRK14278	378	chaperone protein DnaJ; Provisional	98.22
PRK14296	372	chaperone protein DnaJ; Provisional	98.22
PRK14282	369	chaperone protein DnaJ; Provisional	98.21
PRK14291	382	chaperone protein DnaJ; Provisional	98.18
PRK14276	380	chaperone protein DnaJ; Provisional	98.15
PRK14280	376	chaperone protein DnaJ; Provisional	98.13
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.12
PRK14289	386	chaperone protein DnaJ; Provisional	98.1
PRK14277	386	chaperone protein DnaJ; Provisional	98.1
PRK14287	371	chaperone protein DnaJ; Provisional	98.07
PRK14281	397	chaperone protein DnaJ; Provisional	98.06
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.05
PRK14290	365	chaperone protein DnaJ; Provisional	98.04
PRK14297	380	chaperone protein DnaJ; Provisional	98.02
PRK14293	374	chaperone protein DnaJ; Provisional	97.95
PRK14283	378	chaperone protein DnaJ; Provisional	97.91
PRK14292	371	chaperone protein DnaJ; Provisional	97.81
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.68
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.28
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.27
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	97.25
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.02
PRK14296	372	chaperone protein DnaJ; Provisional	96.98
PRK14298	377	chaperone protein DnaJ; Provisional	96.86
PRK14300	372	chaperone protein DnaJ; Provisional	96.85
PRK14285	365	chaperone protein DnaJ; Provisional	96.83
PRK14288	369	chaperone protein DnaJ; Provisional	96.82
PRK14286	372	chaperone protein DnaJ; Provisional	96.81
PRK14279	392	chaperone protein DnaJ; Provisional	96.81
PRK10767	371	chaperone protein DnaJ; Provisional	96.8
PRK14280	376	chaperone protein DnaJ; Provisional	96.78
PRK14282	369	chaperone protein DnaJ; Provisional	96.75
PRK14278	378	chaperone protein DnaJ; Provisional	96.73
PRK14284	391	chaperone protein DnaJ; Provisional	96.72
PRK14301	373	chaperone protein DnaJ; Provisional	96.7
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.64
PRK14276	380	chaperone protein DnaJ; Provisional	96.64
PRK14297	380	chaperone protein DnaJ; Provisional	96.56
PRK14290	365	chaperone protein DnaJ; Provisional	96.54
PRK14294	366	chaperone protein DnaJ; Provisional	96.53
PRK14289	386	chaperone protein DnaJ; Provisional	96.52
PRK14277	386	chaperone protein DnaJ; Provisional	96.52
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.51
PRK14295	389	chaperone protein DnaJ; Provisional	96.49
PRK14281	397	chaperone protein DnaJ; Provisional	96.48
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.45
PRK14293	374	chaperone protein DnaJ; Provisional	96.27
PRK14287	371	chaperone protein DnaJ; Provisional	96.16
PRK14292	371	chaperone protein DnaJ; Provisional	96.13
PRK14283	378	chaperone protein DnaJ; Provisional	96.05
PRK14291	382	chaperone protein DnaJ; Provisional	96.04
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.0
KOG2813	406	consensus Predicted molecular chaperone, contains	95.62
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.35
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	92.46
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	88.89
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	88.33
PRK00635	1809	excinuclease ABC subunit A; Provisional	83.51
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	82.52
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	81.47

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=4.4e-17  Score=135.06  Aligned_cols=74  Identities=30%  Similarity=0.530  Sum_probs=64.5

Q ss_pred             cceeeeeccccchhccCCCCCCCCCCCCCCCCCCCcccCcccccccccccCCCCCCcCeeeCCCCCCCceEEecc-CCce
Q 032984            6 VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQ-NNRI   84 (129)
Q Consensus         6 ~~v~~l~e~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~G~G~v~C~~C~GSG~v~~~~-g~~~   84 (129)
                      -||++|||+|+|++||.++|-                        .....|+.|+|.||++|..||||.+++... ....
T Consensus       206 eeV~~LnE~GkL~~lL~~~p~------------------------~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~  261 (281)
T KOG2824|consen  206 EEVVRLNEEGKLGKLLKGIPC------------------------EGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGG  261 (281)
T ss_pred             HHhhhhhhcchHHHHHhcCCC------------------------CCCCcCCCcCCcceEecCCCCCceeeeeeccCCCc
Confidence            379999999999999998862                        245889999999999999999999998732 2345


Q ss_pred             eeeCccccccceeeCCCCc
Q 032984           85 YRRCPTCRAVGYVLCSKCK  103 (129)
Q Consensus        85 ~~rC~~CnG~Glv~Cp~C~  103 (129)
                      +.+|+.||+||+++||.|.
T Consensus       262 ~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  262 VLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             EEECcccCCCCceeCCccC
Confidence            8999999999999999996

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=99.61  E-value=2.3e-16  Score=119.84  Aligned_cols=71  Identities=24%  Similarity=0.511  Sum_probs=60.5

Q ss_pred             cceeeeeccccchhccCCCCCCCCCCCCCCCCCCCcccCcccccccccccCCCCCCcCeeeCCCCCCCceEEeccC--Cc
Q 032984            6 VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQN--NR   83 (129)
Q Consensus         6 ~~v~~l~e~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~G~G~v~C~~C~GSG~v~~~~g--~~   83 (129)
                      .+|.+|||+|+|.++|...|..                       .....|+.|+|.||++|..|+||.+++..++  ..
T Consensus        75 del~~L~e~G~L~~lL~~~~~~-----------------------~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~  131 (147)
T cd03031          75 EEVLRLNESGELRKLLKGIRAR-----------------------AGGGVCEGCGGARFVPCSECNGSCKVFAENATAAG  131 (147)
T ss_pred             HHHHHHHHcCCHHHHHhhcccc-----------------------cCCCCCCCCCCcCeEECCCCCCcceEEeccCcccc
Confidence            4688999999999999876432                       2457799999999999999999999987652  34


Q ss_pred             eeeeCccccccceeeC
Q 032984           84 IYRRCPTCRAVGYVLC   99 (129)
Q Consensus        84 ~~~rC~~CnG~Glv~C   99 (129)
                      ...+|+.||+||+++|
T Consensus       132 ~~~rC~~Cnengl~~c  147 (147)
T cd03031         132 GFLRCPECNENGLVRC  147 (147)
T ss_pred             cEEECCCCCccccccC
Confidence            5799999999999998

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.00  E-value=6.9e-10  Score=81.59  Aligned_cols=59  Identities=25%  Similarity=0.572  Sum_probs=50.0

Q ss_pred             cccccccCCCCCCcCeeeCCCCCCCceEEecc-C-CceeeeCccccccceeeCCCCcccee
Q 032984           49 EVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQ-N-NRIYRRCPTCRAVGYVLCSKCKVFKC  107 (129)
Q Consensus        49 ~~~~~~~C~~C~G~G~v~C~~C~GSG~v~~~~-g-~~~~~rC~~CnG~Glv~Cp~C~G~~~  107 (129)
                      +......|..|+|+|...|..|+|+|.+.... + .....+|+.|+|.|.+.|+.|.|.+.
T Consensus        37 ~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~   97 (111)
T PLN03165         37 KRENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGI   97 (111)
T ss_pred             hhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCCCCEE
Confidence            34567899999999999999999999986543 2 24578999999999999999999883

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.75  E-value=1.6e-08  Score=66.94  Aligned_cols=50  Identities=32%  Similarity=0.834  Sum_probs=38.2

Q ss_pred             CCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee----CCCCccc
Q 032984           56 CESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL----CSKCKVF  105 (129)
Q Consensus        56 C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~----Cp~C~G~  105 (129)
                      |+.|+|+|.      .+|+.|+|+|+++...    +. .....|+.|+|.|.++    |+.|.|.
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~   65 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGS   65 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCc
Confidence            789999999      5899999999987643    22 5688999999999996    9999885

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.5e-08  Score=87.34  Aligned_cols=58  Identities=31%  Similarity=0.716  Sum_probs=49.6

Q ss_pred             ccccccCCCCCCcCe------eeCCCCCCCceEEecc--CC-ceeeeCccccccceee---CCCCcccee
Q 032984           50 VEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        50 ~~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~--g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      ......|+.|+|+|.      ++|+.|+|+|.+....  +. .....|++|+|+|.++   |++|.|.+.
T Consensus       139 ~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~  208 (371)
T COG0484         139 VTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR  208 (371)
T ss_pred             cceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence            456789999999977      6899999999987655  43 5688999999999997   999999874

>PRK14279 chaperone protein DnaJ; Provisional

Probab=98.38  E-value=5e-07  Score=77.46  Aligned_cols=57  Identities=28%  Similarity=0.677  Sum_probs=47.9

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|+|+|.      .+|+.|+|+|+++...+. .....|+.|+|.|.++   |+.|.|.+.
T Consensus       171 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~  237 (392)
T PRK14279        171 TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGV  237 (392)
T ss_pred             eccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeE
Confidence            45689999999997      579999999998765543 4578999999999987   999998763

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.34  E-value=6e-07  Score=76.41  Aligned_cols=57  Identities=33%  Similarity=0.660  Sum_probs=47.8

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|+|+|.      ..|+.|+|+|.++...|. +...+|+.|+|.|.++   |+.|.|.+.
T Consensus       148 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  214 (372)
T PRK14286        148 PRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGL  214 (372)
T ss_pred             eccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcE
Confidence            45678999999997      589999999998765443 4577999999999986   999999774

>PRK14285 chaperone protein DnaJ; Provisional

Probab=98.32  E-value=6.8e-07  Score=75.93  Aligned_cols=57  Identities=30%  Similarity=0.749  Sum_probs=47.4

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|+|+|.      ..|..|+|+|+++...|. +...+|+.|+|+|.++   |+.|.|.+.
T Consensus       144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  210 (365)
T PRK14285        144 TRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGS  210 (365)
T ss_pred             eecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCE
Confidence            35678999999996      579999999998764433 4578999999999986   999998773

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.31  E-value=9e-07  Score=75.27  Aligned_cols=57  Identities=28%  Similarity=0.708  Sum_probs=47.3

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|.|+|.      ..|+.|+|+|+++...|. .....|+.|+|+|.++   |+.|.|.+.
T Consensus       143 ~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  209 (372)
T PRK14300        143 SSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGR  209 (372)
T ss_pred             eeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceE
Confidence            35688999999996      579999999998765443 4567999999999986   999998773

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.29  E-value=8e-07  Score=75.67  Aligned_cols=56  Identities=36%  Similarity=0.806  Sum_probs=47.0

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|.|+|.      ..|+.|+|+|++....|. +...+|+.|+|.|.++   |+.|.|.+
T Consensus       142 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  207 (373)
T PRK14301        142 PKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSG  207 (373)
T ss_pred             eecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCc
Confidence            45688999999997      579999999998765443 4578999999999986   99999876

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.28  E-value=8.8e-07  Score=75.75  Aligned_cols=56  Identities=32%  Similarity=0.701  Sum_probs=46.8

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|+|+|.      ..|+.|+|+|.++...|. .....|+.|+|.|.++   |+.|.|.+
T Consensus       156 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  221 (391)
T PRK14284        156 SGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQG  221 (391)
T ss_pred             eeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcc
Confidence            45689999999997      579999999998765443 4567999999999886   99999866

>PRK14298 chaperone protein DnaJ; Provisional

Probab=98.28  E-value=9.4e-07  Score=75.43  Aligned_cols=58  Identities=28%  Similarity=0.583  Sum_probs=47.2

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc---CC--ceeeeCccccccceee---CCCCccceeE
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ---NN--RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~---g~--~~~~rC~~CnG~Glv~---Cp~C~G~~~v  108 (129)
                      .....|..|+|+|.      ..|+.|+|+|+++...   ++  +....|+.|+|.|.++   |+.|.|.+.+
T Consensus       139 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  210 (377)
T PRK14298        139 PRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKV  210 (377)
T ss_pred             EeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEE
Confidence            45688999999997      5799999999986542   11  4578999999999886   9999987743

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.27  E-value=1.2e-06  Score=74.21  Aligned_cols=57  Identities=28%  Similarity=0.670  Sum_probs=47.2

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|.|+|.      ..|+.|+|+|+++...|. ....+|+.|+|.|.++   |+.|.|.+.
T Consensus       140 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  206 (371)
T PRK10767        140 PTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGR  206 (371)
T ss_pred             eecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCce
Confidence            45688999999996      479999999998765443 4567999999999985   999998773

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.26  E-value=1.2e-06  Score=75.09  Aligned_cols=56  Identities=27%  Similarity=0.667  Sum_probs=47.2

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|.|+|.      ..|+.|+|+|+++...+. ....+|+.|+|.|.++   |+.|.|.+
T Consensus       164 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  229 (389)
T PRK14295        164 TSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSG  229 (389)
T ss_pred             eccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCc
Confidence            45678999999997      579999999998765443 4578999999999987   99999876

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.25  E-value=1.4e-06  Score=74.12  Aligned_cols=56  Identities=30%  Similarity=0.684  Sum_probs=46.4

Q ss_pred             cccccCCCCCCcCe-----eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|+|+|.     ..|+.|+|+|.++...|. .....|+.|+|.|.++   |+.|.|.+
T Consensus       138 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  202 (369)
T PRK14288        138 QYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKT  202 (369)
T ss_pred             EeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcc
Confidence            34569999999996     579999999998765443 4567999999999886   99999875

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=7.9e-07  Score=76.42  Aligned_cols=62  Identities=29%  Similarity=0.631  Sum_probs=49.6

Q ss_pred             cccCCCCCCcCeeeCCCCCCCceEEec-----------------c---------CCceeeeCccccccceeeCCCCccce
Q 032984           53 GIMCESCNGKGWLVCDFCGGQKTNVKA-----------------Q---------NNRIYRRCPTCRAVGYVLCSKCKVFK  106 (129)
Q Consensus        53 ~~~C~~C~G~G~v~C~~C~GSG~v~~~-----------------~---------g~~~~~rC~~CnG~Glv~Cp~C~G~~  106 (129)
                      -..|..|.|.|.++|+.|+|+|...-.                 +         ++++..+|++|.|.|++.|.+|+|.+
T Consensus       187 v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtg  266 (406)
T KOG2813|consen  187 VTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTG  266 (406)
T ss_pred             hhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCcc
Confidence            367999999999999999999942100                 0         23567899999999999999999887


Q ss_pred             --------eEeecCCc
Q 032984          107 --------CVTFPNYD  114 (129)
Q Consensus       107 --------~v~~~n~~  114 (129)
                              .|-|-|+.
T Consensus       267 sll~~t~~vV~wKn~~  282 (406)
T KOG2813|consen  267 SLLNYTRIVVYWKNEK  282 (406)
T ss_pred             ceeeeEEEEEEeechh
Confidence                    67788876

>PRK14294 chaperone protein DnaJ; Provisional

Probab=98.23  E-value=1.6e-06  Score=73.54  Aligned_cols=57  Identities=33%  Similarity=0.747  Sum_probs=47.2

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|.|+|.      .+|+.|+|+|.++...|. +...+|+.|+|.|.++   |+.|.|.+.
T Consensus       142 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  208 (366)
T PRK14294        142 QKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGR  208 (366)
T ss_pred             eecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceE
Confidence            35678999999997      479999999998754443 4578999999999986   999998763

>PRK14278 chaperone protein DnaJ; Provisional

Probab=98.22  E-value=1.7e-06  Score=73.76  Aligned_cols=57  Identities=39%  Similarity=0.898  Sum_probs=46.2

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|+|+|.      ..|+.|+|+|+++...    |. .....|+.|+|.|.++   |+.|.|.+.
T Consensus       137 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  207 (378)
T PRK14278        137 DTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGR  207 (378)
T ss_pred             EeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCcee
Confidence            45678999999996      5799999999976543    21 3467999999999986   999999763

>PRK14296 chaperone protein DnaJ; Provisional

Probab=98.22  E-value=1.4e-06  Score=74.29  Aligned_cols=56  Identities=23%  Similarity=0.617  Sum_probs=45.8

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc--CC---ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~--g~---~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|+|+|.      ..|+.|+|+|.++...  +.   +...+|+.|+|.|.++   |+.|.|.+
T Consensus       147 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g  216 (372)
T PRK14296        147 DLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKG  216 (372)
T ss_pred             eeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCce
Confidence            35678999999997      4799999999976543  21   3457999999999987   99999876

>PRK14282 chaperone protein DnaJ; Provisional

Probab=98.21  E-value=2.1e-06  Score=72.82  Aligned_cols=56  Identities=23%  Similarity=0.527  Sum_probs=45.9

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|.|+|.      ..|+.|+|+|+++...    |. .....|+.|+|.|.++   |+.|.|.+
T Consensus       150 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  219 (369)
T PRK14282        150 DRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSG  219 (369)
T ss_pred             eecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCce
Confidence            45678999999996      5799999999986542    22 3467999999999986   99999876

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.18  E-value=2.2e-06  Score=73.18  Aligned_cols=56  Identities=38%  Similarity=0.786  Sum_probs=46.3

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee--CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL--CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~--Cp~C~G~~  106 (129)
                      .....|..|+|+|.      ..|+.|+|+|+++...+. .....|+.|+|.|.+.  |+.|.|.+
T Consensus       154 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g  218 (382)
T PRK14291        154 PRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRG  218 (382)
T ss_pred             eeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCCc
Confidence            45688999999996      579999999998765432 4578999999999764  99999866

>PRK14276 chaperone protein DnaJ; Provisional

Probab=98.15  E-value=2.8e-06  Score=72.46  Aligned_cols=57  Identities=25%  Similarity=0.571  Sum_probs=46.2

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|+|+|.      ..|+.|+|+|.+....    |. ....+|+.|+|.|.++   |+.|.|.+.
T Consensus       144 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  214 (380)
T PRK14276        144 NREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGH  214 (380)
T ss_pred             eccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceE
Confidence            45678999999997      5799999999976542    21 3467999999999986   999998763

>PRK14280 chaperone protein DnaJ; Provisional

Probab=98.13  E-value=3.4e-06  Score=71.86  Aligned_cols=57  Identities=26%  Similarity=0.634  Sum_probs=46.1

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|+|+|.      ..|+.|+|+|++....    |. .....|+.|+|.|.++   |+.|.|.+.
T Consensus       141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  211 (376)
T PRK14280        141 PKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGK  211 (376)
T ss_pred             eeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceE
Confidence            35678999999996      5799999999876542    11 3467999999999986   999999773

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.12  E-value=3.6e-06  Score=70.72  Aligned_cols=56  Identities=34%  Similarity=0.719  Sum_probs=46.0

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccC----C-ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQN----N-RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g----~-~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|.|+|.      ..|..|+|+|.++...+    . ....+|+.|+|.|.++   |+.|.|.+
T Consensus       141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  210 (354)
T TIGR02349       141 PRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKG  210 (354)
T ss_pred             ecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCc
Confidence            45689999999995      57999999999875432    1 3467999999999986   99999876

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.10  E-value=3.4e-06  Score=71.89  Aligned_cols=56  Identities=29%  Similarity=0.689  Sum_probs=46.4

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|.|+|.      ..|+.|+|+|+++...    |. .....|+.|+|.|.++   |+.|.|.+
T Consensus       152 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  221 (386)
T PRK14289        152 KKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEG  221 (386)
T ss_pred             EeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCc
Confidence            45689999999997      5799999999987543    22 3578999999999886   99999876

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.10  E-value=4e-06  Score=71.66  Aligned_cols=58  Identities=28%  Similarity=0.607  Sum_probs=46.6

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccceeE
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~v  108 (129)
                      .....|..|.|+|.      ..|+.|+|+|+++...    |. ....+|+.|+|.|.++   |+.|.|.+.|
T Consensus       153 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  224 (386)
T PRK14277        153 ERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRI  224 (386)
T ss_pred             EeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEE
Confidence            35678999999996      5799999999876543    22 3457999999999987   9999997743

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.07  E-value=4.7e-06  Score=70.96  Aligned_cols=58  Identities=28%  Similarity=0.589  Sum_probs=46.1

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccceeE
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~v  108 (129)
                      .....|..|+|+|.      ..|+.|+|+|++....    |. .....|+.|+|.|.++   |+.|.|.+.+
T Consensus       136 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  207 (371)
T PRK14287        136 PREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKV  207 (371)
T ss_pred             eeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEE
Confidence            35678999999996      5799999999876543    21 3467999999999986   9999986643

>PRK14281 chaperone protein DnaJ; Provisional

Probab=98.06  E-value=5e-06  Score=71.37  Aligned_cols=57  Identities=30%  Similarity=0.619  Sum_probs=45.9

Q ss_pred             cccccCCCCCCcCe-----eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|.|+|.     ..|..|+|+|.++...    |. ....+|+.|+|.|.++   |+.|.|.+.
T Consensus       161 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  230 (397)
T PRK14281        161 KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGI  230 (397)
T ss_pred             EeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCcc
Confidence            35678999999997     4799999999976543    21 3467999999999986   999998763

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.05  E-value=5.5e-06  Score=72.10  Aligned_cols=56  Identities=25%  Similarity=0.759  Sum_probs=45.1

Q ss_pred             cccccCCCCCCcCe-----eeCCCCCCCceEEecc--CC---ceeeeCccccccceee-----CCCCccce
Q 032984           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL-----CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~--g~---~~~~rC~~CnG~Glv~-----Cp~C~G~~  106 (129)
                      .....|..|+|+|.     .+|+.|+|+|.++...  +.   ....+|+.|+|.|.++     |+.|.|.+
T Consensus       148 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g  218 (421)
T PTZ00037        148 NKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKG  218 (421)
T ss_pred             eccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcc
Confidence            35678999999997     4799999999865432  21   3467999999999974     99999876

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.04  E-value=7.5e-06  Score=69.44  Aligned_cols=57  Identities=25%  Similarity=0.596  Sum_probs=45.7

Q ss_pred             cccccCCCCCCcCe-----eeCCCCCCCceEEecc--CC---ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~--g~---~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|.|+|.     ..|+.|+|+|+++...  |.   ....+|+.|+|.|.+.   |+.|.|.+.
T Consensus       147 ~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  216 (365)
T PRK14290        147 RRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGT  216 (365)
T ss_pred             eecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCcee
Confidence            35678999999997     5799999999876543  21   2347999999999886   999998763

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.02  E-value=7.1e-06  Score=69.93  Aligned_cols=56  Identities=32%  Similarity=0.661  Sum_probs=45.8

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|.|+|.      .+|+.|+|+|++....    |. ....+|+.|+|.|.++   |+.|.|.+
T Consensus       146 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  215 (380)
T PRK14297        146 TRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKG  215 (380)
T ss_pred             eeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCe
Confidence            45678999999996      5799999999876432    21 3578999999999986   99999976

>PRK14293 chaperone protein DnaJ; Provisional

Probab=97.95  E-value=1.1e-05  Score=68.65  Aligned_cols=56  Identities=32%  Similarity=0.708  Sum_probs=45.3

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|.|+|.      ..|+.|+|+|+++...    |. ....+|..|+|.|.++   |+.|.|.+
T Consensus       141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  210 (374)
T PRK14293        141 PHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQG  210 (374)
T ss_pred             eccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCc
Confidence            45678999999987      4799999999876532    22 3467999999999985   99999866

>PRK14283 chaperone protein DnaJ; Provisional

Probab=97.91  E-value=1.3e-05  Score=68.18  Aligned_cols=57  Identities=26%  Similarity=0.612  Sum_probs=45.8

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|.|+|.      ..|+.|+|+|++....    |. ....+|..|+|.|.++   |..|.|.+.
T Consensus       144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  214 (378)
T PRK14283        144 RHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGV  214 (378)
T ss_pred             eeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCcee
Confidence            35678999999886      4799999999987543    21 3467999999999984   999998763

>PRK14292 chaperone protein DnaJ; Provisional

Probab=97.81  E-value=2.6e-05  Score=66.12  Aligned_cols=57  Identities=26%  Similarity=0.592  Sum_probs=45.1

Q ss_pred             cccccCCCCCCcCe-------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984           51 EVGIMCESCNGKGW-------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (129)
Q Consensus        51 ~~~~~C~~C~G~G~-------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~  107 (129)
                      .....|..|.|+|.       ..|..|+|+|+++...    |. ....+|..|+|.|.++   |+.|.|.+.
T Consensus       137 ~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  208 (371)
T PRK14292        137 DRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGR  208 (371)
T ss_pred             EeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceE
Confidence            34578999999985       5799999999876432    21 3457999999999986   999998763

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.68  E-value=4e-05  Score=50.67  Aligned_cols=38  Identities=34%  Similarity=0.802  Sum_probs=28.5

Q ss_pred             ccccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccc
Q 032984           52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG   95 (129)
Q Consensus        52 ~~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~G   95 (129)
                      ....|..|+|+|+               .+|+.|+|+|+++ .     ..+|+.|+|.|
T Consensus        14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~-----~~~C~~C~G~g   66 (66)
T PF00684_consen   14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E-----KDPCKTCKGSG   66 (66)
T ss_dssp             T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T-----SSB-SSSTTSS
T ss_pred             CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C-----CCCCCCCCCcC
Confidence            5678999999998               4799999999987 2     35999999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.00022  Score=61.84  Aligned_cols=40  Identities=30%  Similarity=0.682  Sum_probs=34.9

Q ss_pred             ccccCCCCCCcCe-------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGW-------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~-------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|+|.             .+|+.|+|+|+++       ..+|++|+|.|.+.
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-------~~pC~~C~G~G~v~  210 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-------KDPCGKCKGKGRVK  210 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------CCCCCCCCCCCeEe
Confidence            5679999999995             4799999999987       45999999999964

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.27  E-value=0.00023  Score=65.37  Aligned_cols=53  Identities=30%  Similarity=0.682  Sum_probs=33.9

Q ss_pred             ccCCCCCCcCee-----eCCCCCCCceEEecc--C-------C-----ceeeeCccccccceee----CCCCccce
Q 032984           54 IMCESCNGKGWL-----VCDFCGGQKTNVKAQ--N-------N-----RIYRRCPTCRAVGYVL----CSKCKVFK  106 (129)
Q Consensus        54 ~~C~~C~G~G~v-----~C~~C~GSG~v~~~~--g-------~-----~~~~rC~~CnG~Glv~----Cp~C~G~~  106 (129)
                      ..|..|+|+|++     .|+.|+|+|++.+-+  +       .     ..-.+|+.|.|.|.+.    |+.|.|.+
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~g   78 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTG   78 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCce
Confidence            468999999983     699999999863211  0       0     1124666666666654    66666554

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00026  Score=60.77  Aligned_cols=55  Identities=24%  Similarity=0.614  Sum_probs=46.1

Q ss_pred             ccccCCCCCCcCee-----eCCCCCCCceEEecc--C----CceeeeCcccccccee-----eCCCCccce
Q 032984           52 VGIMCESCNGKGWL-----VCDFCGGQKTNVKAQ--N----NRIYRRCPTCRAVGYV-----LCSKCKVFK  106 (129)
Q Consensus        52 ~~~~C~~C~G~G~v-----~C~~C~GSG~v~~~~--g----~~~~~rC~~CnG~Glv-----~Cp~C~G~~  106 (129)
                      ....|+.|.|.|..     .|..|.|+|..+...  +    .+....|..|+|.|..     +|+.|.|.+
T Consensus       126 ~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~  196 (337)
T KOG0712|consen  126 RNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAK  196 (337)
T ss_pred             cCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccch
Confidence            67899999999993     599999999866532  2    2568899999999998     799999876

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.02  E-value=0.00072  Score=62.18  Aligned_cols=53  Identities=34%  Similarity=0.795  Sum_probs=42.1

Q ss_pred             ccccCCCCCCcCe------------------------eeCCCCCCCceEEeccCCceeeeCccccccceee-CCCCccce
Q 032984           52 VGIMCESCNGKGW------------------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL-CSKCKVFK  106 (129)
Q Consensus        52 ~~~~C~~C~G~G~------------------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~-Cp~C~G~~  106 (129)
                      ....|.-|+|+|+                        ++|+.|+|.|.+.      ++..|+.|+|+|.+. |..| |..
T Consensus        17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~------v~~~c~~c~G~gkv~~c~~c-G~~   89 (715)
T COG1107          17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT------VYDTCPECGGTGKVLTCDIC-GDI   89 (715)
T ss_pred             eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE------EEeecccCCCceeEEeeccc-cce
Confidence            5567999999997                        5899999999986      378999999999986 8888 434


Q ss_pred             eEeec
Q 032984          107 CVTFP  111 (129)
Q Consensus       107 ~v~~~  111 (129)
                      .+.|+
T Consensus        90 ~~~~~   94 (715)
T COG1107          90 IVPWE   94 (715)
T ss_pred             ecCcc
Confidence            44443

>PRK14296 chaperone protein DnaJ; Provisional

Probab=96.98  E-value=0.00066  Score=58.03  Aligned_cols=39  Identities=28%  Similarity=0.812  Sum_probs=33.2

Q ss_pred             cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+               +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  219 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-------KNKCKNCKGKGKYL  219 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-------cccccCCCCceEEE
Confidence            4679999999974               799999999986       35799999999763

>PRK14298 chaperone protein DnaJ; Provisional

Probab=96.86  E-value=0.00082  Score=57.54  Aligned_cols=39  Identities=31%  Similarity=0.786  Sum_probs=33.2

Q ss_pred             cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+               +|+.|+|+|+++       ..+|+.|+|.|.+.
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  211 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------ESPCPVCSGTGKVR  211 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------CCCCCCCCCccEEE
Confidence            4679999999963               699999999975       35799999999874

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.85  E-value=0.00091  Score=57.04  Aligned_cols=40  Identities=25%  Similarity=0.665  Sum_probs=32.4

Q ss_pred             ccccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|+|.+           +|+.|+|.|++.       ..+|+.|+|.|.+.
T Consensus       161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  211 (372)
T PRK14300        161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------KNPCKKCHGMGRYH  211 (372)
T ss_pred             CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------CCCCCCCCCceEEE
Confidence            34679999999874           599999999876       35799999999863

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.83  E-value=0.00098  Score=56.78  Aligned_cols=39  Identities=28%  Similarity=0.750  Sum_probs=31.7

Q ss_pred             cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+           +|+.|+|.|++.       ..+|..|+|.|.+.
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  212 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------SNPCKSCKGKGSLK  212 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------CCCCCCCCCCCEEe
Confidence            4679999999863           799999999875       34799999999764

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.82  E-value=0.0012  Score=56.41  Aligned_cols=39  Identities=31%  Similarity=0.829  Sum_probs=30.4

Q ss_pred             cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+           +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  205 (369)
T PRK14288        156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------KTPCQACKGKTYIL  205 (369)
T ss_pred             CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------cccCccCCCcceEE
Confidence            4678999998864           599999998875       34689999888763

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.81  E-value=0.001  Score=56.82  Aligned_cols=39  Identities=31%  Similarity=0.737  Sum_probs=30.8

Q ss_pred             cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+           +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~  216 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------SNPCKTCGGQGLQE  216 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------cccCCCCCCCcEEe
Confidence            3679999998864           699999998875       34799999988875

>PRK14279 chaperone protein DnaJ; Provisional

Probab=96.81  E-value=0.001  Score=57.21  Aligned_cols=40  Identities=28%  Similarity=0.726  Sum_probs=31.8

Q ss_pred             ccccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|+|.+           +|+.|+|+|+++       ..+|..|+|.|.+.
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------~~~C~~C~G~g~v~  239 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------EDPCEECKGTGVTT  239 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------CCcCCCCCCCeEEE
Confidence            34679999999873           699999999875       34799999988874

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.80  E-value=0.001  Score=56.50  Aligned_cols=39  Identities=28%  Similarity=0.710  Sum_probs=32.1

Q ss_pred             cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+           +|+.|+|.|++.       ..+|+.|+|.|.+.
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  208 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------KDPCKKCHGQGRVE  208 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------CCCCCCCCCCceEe
Confidence            4579999999875           499999999875       35799999999874

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.78  E-value=0.0012  Score=56.36  Aligned_cols=39  Identities=33%  Similarity=0.877  Sum_probs=33.0

Q ss_pred             cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+               +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  213 (376)
T PRK14280        160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------KEKCPTCHGKGKVR  213 (376)
T ss_pred             CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------cCCCCCCCCceEEE
Confidence            5679999999863               699999999976       35799999999874

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.75  E-value=0.0013  Score=55.95  Aligned_cols=40  Identities=28%  Similarity=0.702  Sum_probs=33.4

Q ss_pred             ccccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|+|.+               +|+.|+|+|++.       ..+|..|+|.|.+.
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  222 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------GEYCHECGGSGRIR  222 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------CCCCCCCCCceeEE
Confidence            34689999999974               699999999975       35799999999764

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.73  E-value=0.0013  Score=56.37  Aligned_cols=39  Identities=28%  Similarity=0.688  Sum_probs=32.9

Q ss_pred             cccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.               .+|+.|+|.|+++       ..+|+.|+|.|.+.
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  209 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------PDPCHECAGDGRVR  209 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------CCCCCCCCCceeEe
Confidence            467999999986               3699999999986       34799999999863

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.72  E-value=0.0011  Score=56.90  Aligned_cols=39  Identities=31%  Similarity=0.780  Sum_probs=32.0

Q ss_pred             ccccCCCCCCcCe-----------eeCCCCCCCceEEeccCCceeeeCcccccccee
Q 032984           52 VGIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV   97 (129)
Q Consensus        52 ~~~~C~~C~G~G~-----------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv   97 (129)
                      ....|..|+|+|.           .+|+.|+|.|+++       ..+|+.|+|.|.+
T Consensus       174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v  223 (391)
T PRK14284        174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------TDPCSVCRGQGRI  223 (391)
T ss_pred             CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------CCcCCCCCCccee
Confidence            3567999999987           4799999999875       3479999999986

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.70  E-value=0.0012  Score=56.42  Aligned_cols=39  Identities=31%  Similarity=0.829  Sum_probs=31.3

Q ss_pred             cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+           +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  210 (373)
T PRK14301        161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-------THPCPKCKGSGIVQ  210 (373)
T ss_pred             CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-------CCCCCCCCCCceec
Confidence            4679999999863           699999999875       34799999999864

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.64  E-value=0.0017  Score=56.65  Aligned_cols=42  Identities=29%  Similarity=0.708  Sum_probs=34.6

Q ss_pred             ccccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|+|.               .+|+.|+|+|+++..     ..+|..|+|.|.+.
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-----~~~C~~C~G~g~v~  221 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-----SKKCKNCSGKGVKK  221 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc-----cccCCcCCCcceee
Confidence            3568999999994               379999999998742     35899999999875

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.64  E-value=0.0014  Score=56.03  Aligned_cols=39  Identities=31%  Similarity=0.838  Sum_probs=32.9

Q ss_pred             cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+               +|+.|+|+|+++       ..+|+.|+|.|.+.
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~  216 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------KEPCQTCHGTGHEK  216 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------cCCCCCCCCceEEE
Confidence            4689999999863               699999999976       35799999999864

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.56  E-value=0.0019  Score=55.17  Aligned_cols=39  Identities=33%  Similarity=0.824  Sum_probs=32.8

Q ss_pred             cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+               +|+.|+|.|++.       ..+|..|+|.|.+.
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  218 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-------EDPCNKCHGKGKVR  218 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-------CCCCCCCCCCeEEE
Confidence            5679999999864               699999999976       35799999999653

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.54  E-value=0.0023  Score=54.42  Aligned_cols=40  Identities=35%  Similarity=0.855  Sum_probs=33.7

Q ss_pred             ccccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|.|.               .+|+.|+|.|++.       ..+|+.|+|.|.+.
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  218 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------EEKCPRCNGTGTVV  218 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------cCCCCCCCCceeEE
Confidence            3568999999995               3799999999974       45899999999964

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.53  E-value=0.002  Score=54.77  Aligned_cols=39  Identities=31%  Similarity=0.723  Sum_probs=32.0

Q ss_pred             cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|.|.+           +|+.|+|+|++.       ..+|..|+|.|.+.
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  210 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------VSPCKTCHGQGRVR  210 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------CcCCCCCCCceEee
Confidence            4679999999863           699999999875       35799999999864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.52  E-value=0.002  Score=55.12  Aligned_cols=40  Identities=28%  Similarity=0.760  Sum_probs=33.5

Q ss_pred             ccccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|+|.+               +|+.|+|.|++.       ..+|..|+|.|.+.
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  224 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------KKKCKKCGGEGIVY  224 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------CcCCCCCCCCcEEe
Confidence            45789999999884               699999999875       35799999999864

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.52  E-value=0.0021  Score=55.12  Aligned_cols=39  Identities=28%  Similarity=0.778  Sum_probs=33.1

Q ss_pred             cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|.|.+               +|+.|+|+|++.       ..+|..|+|.|.+.
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  225 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------TDPCNKCGGTGRIR  225 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------cCCCCCCCCCcEEe
Confidence            4689999999863               699999999986       34799999999873

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.51  E-value=0.0023  Score=53.86  Aligned_cols=39  Identities=33%  Similarity=0.806  Sum_probs=33.2

Q ss_pred             cccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.               .+|+.|+|+|++.       ...|..|+|.|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  213 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------KEPCSTCKGKGRVK  213 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------CCCCCCCCCCcEec
Confidence            578999999986               3699999999976       34799999999874

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.49  E-value=0.0023  Score=55.01  Aligned_cols=39  Identities=26%  Similarity=0.598  Sum_probs=31.0

Q ss_pred             cccCCCCCCcCe-----------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~-----------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.           .+|+.|+|+|++.       ..+|..|+|.|.+.
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~  232 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------DDPCLVCKGSGRAK  232 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------ccCCCCCCCCceEe
Confidence            467999999886           3799999998875       34799999988764

>PRK14281 chaperone protein DnaJ; Provisional

Probab=96.48  E-value=0.0025  Score=54.90  Aligned_cols=40  Identities=35%  Similarity=0.830  Sum_probs=33.8

Q ss_pred             ccccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|.|.+               +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  232 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------KDRCPACYGEGIKQ  232 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------CCCCCCCCCCccEe
Confidence            45689999999963               599999999986       34799999999974

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.45  E-value=0.0043  Score=45.75  Aligned_cols=37  Identities=30%  Similarity=0.628  Sum_probs=29.0

Q ss_pred             ccccCCCCCCcCe------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGW------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|+|+            ..|+.|+|+|++          .|..|.|.|.+.
T Consensus        51 G~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~----------~C~~C~G~G~~~   99 (111)
T PLN03165         51 GAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL----------TCTTCQGSGIQP   99 (111)
T ss_pred             CCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee----------eCCCCCCCEEEe
Confidence            3358999999877            268888888863          499999999864

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.27  E-value=0.0034  Score=53.53  Aligned_cols=39  Identities=26%  Similarity=0.670  Sum_probs=32.7

Q ss_pred             cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+               +|+.|+|.|++.       ..+|..|+|.|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  213 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------EDPCDACGGQGVKQ  213 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------ccCCCCCCCCcccc
Confidence            4679999999973               599999999975       34799999999863

>PRK14287 chaperone protein DnaJ; Provisional

Probab=96.16  E-value=0.0042  Score=53.08  Aligned_cols=39  Identities=33%  Similarity=0.770  Sum_probs=33.1

Q ss_pred             cccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.               .+|+.|+|+|++.       ..+|..|+|.|.+.
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  208 (371)
T PRK14287        155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------KQKCATCGGKGKVR  208 (371)
T ss_pred             CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------cccCCCCCCeeEEe
Confidence            467999999986               3699999999975       35799999999875

>PRK14292 chaperone protein DnaJ; Provisional

Probab=96.13  E-value=0.0047  Score=52.48  Aligned_cols=39  Identities=31%  Similarity=0.750  Sum_probs=32.9

Q ss_pred             cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+               +|..|+|.|+..       ..+|+.|+|.|.+.
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  210 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------TDPCTVCRGRGRTL  210 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------CCCCCCCCCceEEe
Confidence            5779999999974               599999999875       35899999999764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=96.05  E-value=0.0058  Score=52.20  Aligned_cols=40  Identities=30%  Similarity=0.689  Sum_probs=33.2

Q ss_pred             ccccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|.|.|.+               +|+.|+|+|+..       ..+|..|+|.|.+.
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  216 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------EKPCSNCHGKGVVR  216 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------CCCCCCCCCceeec
Confidence            35679999999884               599999999875       35799999999863

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.04  E-value=0.0066  Score=51.96  Aligned_cols=38  Identities=32%  Similarity=0.865  Sum_probs=29.2

Q ss_pred             cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+           +|..|+|+|.+        ...|..|+|.|.+.
T Consensus       173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--------~~~C~~C~G~g~v~  221 (382)
T PRK14291        173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL--------REPCSKCNGRGLVI  221 (382)
T ss_pred             CccCCCCCCceEEEEecceEEEEecCCCCCCceEE--------ccCCCCCCCCceEE
Confidence            5679999998863           69999998853        24799999988763

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.00  E-value=0.0046  Score=49.15  Aligned_cols=25  Identities=32%  Similarity=0.803  Sum_probs=16.4

Q ss_pred             cccCCCCCCcCee-----eCCCCCCCceEE
Q 032984           53 GIMCESCNGKGWL-----VCDFCGGQKTNV   77 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----~C~~C~GSG~v~   77 (129)
                      ...|+.|+|+|++     +|+.|+|+|++.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~  128 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFR  128 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence            4567777777764     277777777654

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.0063  Score=52.82  Aligned_cols=37  Identities=32%  Similarity=0.839  Sum_probs=27.7

Q ss_pred             ccccCCCCCCcCeeeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|+|...|+.|+|.|+          .+|.+|.|+|.+.
T Consensus       233 t~~~C~~C~G~G~~~C~tC~grG~----------k~C~TC~gtgsll  269 (406)
T KOG2813|consen  233 THDLCYMCHGRGIKECHTCKGRGK----------KPCTTCSGTGSLL  269 (406)
T ss_pred             ccchhhhccCCCcccCCcccCCCC----------cccccccCcccee
Confidence            446677777777777777777765          4888899888765

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.35  E-value=0.013  Score=46.68  Aligned_cols=30  Identities=27%  Similarity=0.494  Sum_probs=25.0

Q ss_pred             eeeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        64 ~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ..+|+.|+|+|++...     ..+|+.|+|.|.+.
T Consensus        99 ~~~C~~C~G~G~~i~~-----~~~C~~C~G~G~v~  128 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRR-----QRECDTCAGTGRFR  128 (186)
T ss_pred             CCcCCCCCCeeEEecC-----CCCCCCCCCccEEe
Confidence            4689999999998742     25899999999975

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.46  E-value=0.16  Score=43.88  Aligned_cols=42  Identities=36%  Similarity=0.780  Sum_probs=33.6

Q ss_pred             ccccCCCCCCcCe----------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGW----------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~----------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|.|+|.                ++|..|+|+|..+..     ..+|+.|+|.+.+.
T Consensus       142 ~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~-----kd~C~~C~G~~~v~  199 (337)
T KOG0712|consen  142 SAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISL-----KDRCKTCSGAKVVR  199 (337)
T ss_pred             CCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccc-----cccCcccccchhhh
Confidence            3457999999998                579999999886422     56999999999874

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=88.89  E-value=0.3  Score=46.80  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=14.2

Q ss_pred             eCCCCccce------eEeecCCcchHHHHHHh
Q 032984           98 LCSKCKVFK------CVTFPNYDDANALLELT  123 (129)
Q Consensus        98 ~Cp~C~G~~------~v~~~n~~D~~~l~~~~  123 (129)
                      .|+.|.|.+      .|+|.+ ....|++++|
T Consensus       761 ~C~~C~G~R~~~e~l~v~~~g-~~i~dvl~~t  791 (924)
T TIGR00630       761 PCEVCKGKRYNRETLEVKYKG-KNIADVLDMT  791 (924)
T ss_pred             CCCCcCCceeChHHHhceeCC-CCHHHHhCCc
Confidence            366666555      677754 4555555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=88.33  E-value=0.14  Score=42.80  Aligned_cols=56  Identities=29%  Similarity=0.601  Sum_probs=42.0

Q ss_pred             cccccCCCCCCcCe------eeCCCCCCCceEEeccCCceee-eCccccccceee---CCCCccce
Q 032984           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRIYR-RCPTCRAVGYVL---CSKCKVFK  106 (129)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~~~~~-rC~~CnG~Glv~---Cp~C~G~~  106 (129)
                      .....|..|.|.|.      ..|..|+|.|.+....-..... .|..|++.|.+.   |..|.|-.
T Consensus       162 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~  227 (288)
T KOG0715|consen  162 NVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAG  227 (288)
T ss_pred             EeecccccccCcCcccccccccchhhhCcccccccccCCcceeecccccccceeccchHHHhhcch
Confidence            35568999999998      4799999999765432111122 699999999997   77888766

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=83.51  E-value=0.73  Score=47.30  Aligned_cols=16  Identities=19%  Similarity=0.175  Sum_probs=9.2

Q ss_pred             eEeecCCcchHHHHHHh
Q 032984          107 CVTFPNYDDANALLELT  123 (129)
Q Consensus       107 ~v~~~n~~D~~~l~~~~  123 (129)
                      .|+|. ...+.|++++|
T Consensus      1647 ~v~~~-gk~I~dvL~mt 1662 (1809)
T PRK00635       1647 EVVYE-GKHFGQLLQTP 1662 (1809)
T ss_pred             hheeC-CCCHHHHhcCC
Confidence            56665 34566666554

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=82.52  E-value=0.7  Score=38.27  Aligned_cols=28  Identities=14%  Similarity=0.310  Sum_probs=24.2

Q ss_pred             ccccCCCCCCcCeeeCCCCCCCceEEec
Q 032984           52 VGIMCESCNGKGWLVCDFCGGQKTNVKA   79 (129)
Q Consensus        52 ~~~~C~~C~G~G~v~C~~C~GSG~v~~~   79 (129)
                      ...++.+-.|.+.++|+.|+|+|++-+.
T Consensus        26 ~~~py~e~~g~~~vtCPTCqGtGrIP~e   53 (238)
T PF07092_consen   26 SSFPYVEFTGRDSVTCPTCQGTGRIPRE   53 (238)
T ss_pred             ccCccccccCCCCCcCCCCcCCccCCcc
Confidence            4577888999999999999999998654

The function of this family is unknown.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=81.47  E-value=1.2  Score=42.90  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=11.4

Q ss_pred             CCCCccce------eEeecCCcchHHHH
Q 032984           99 CSKCKVFK------CVTFPNYDDANALL  120 (129)
Q Consensus        99 Cp~C~G~~------~v~~~n~~D~~~l~  120 (129)
                      |+.|.|.+      .|+|.+. ...|++
T Consensus       764 C~~C~G~R~~~e~l~v~~~g~-~i~dvl  790 (943)
T PRK00349        764 CDVCKGKRYNRETLEVKYKGK-NIADVL  790 (943)
T ss_pred             CccccCccccccceEEEECCC-CHHHHh
Confidence            55555554      6777654 344443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 15/73 (20%)

Query: 46  VKQEVEVGIMCESCNGKG-----WLVCDFCGGQKTNVKAQNN-----RIYRRCPTCRAVG 95
            K  +   I+C+ C G+G        C  C GQ      +       R    C  C   G
Sbjct: 31  AKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTG 90

Query: 96  YVL-----CSKCK 103
            ++     C  C 
Sbjct: 91  DIIDPKDRCKSCN 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 31/110 (28%)

Query: 16  KLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGI--M--CESCNGKGWLVCDFCG 71
           +L++     +  + SR    LK + AL   ++    V I  +       GK W+  D   
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGS----GKTWVALD--- 169

Query: 72  GQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALLE 121
                              C +         K+F  +   N +    +LE
Sbjct: 170 ------------------VCLSYKVQCKMDFKIF-WLNLKNCNSPETVLE 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.84
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.8
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	98.3
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.01
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.86
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.24
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.03
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.91
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.16
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.07

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.84  E-value=3.5e-09  Score=69.99  Aligned_cols=57  Identities=28%  Similarity=0.612  Sum_probs=47.2

Q ss_pred             ccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCcccccccee---eCCCCccceeE
Q 032984           52 VGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYV---LCSKCKVFKCV  108 (129)
Q Consensus        52 ~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv---~Cp~C~G~~~v  108 (129)
                      ....|+.|+|+|.      .+|+.|+|+|+++...+. ....+|+.|+|.|.+   .|+.|.|.+.+
T Consensus        10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~   76 (79)
T 1exk_A           10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             cceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence            5688999999996      589999999998654333 345799999999999   59999998755

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=8.2e-09  Score=72.03  Aligned_cols=57  Identities=28%  Similarity=0.673  Sum_probs=47.7

Q ss_pred             ccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccceeE
Q 032984           52 VGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (129)
Q Consensus        52 ~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~v  108 (129)
                      ....|+.|+|+|.      ..|+.|+|+|++....|. ....+|+.|+|.|.++   |+.|.|.+.+
T Consensus        27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v   93 (104)
T 2ctt_A           27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQA   93 (104)
T ss_dssp             CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECSSCCSSSSSCSEE
T ss_pred             eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECCCcCCCCCCeeEE
Confidence            6789999999984      689999999998655443 3467999999999995   9999998755

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=98.30  E-value=3.6e-07  Score=72.60  Aligned_cols=56  Identities=29%  Similarity=0.740  Sum_probs=45.1

Q ss_pred             ccccCCCCCCcCe-----eeCCCCCCCceEEecc--CC---ceeeeCccccccceee-----CCCCcccee
Q 032984           52 VGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL-----CSKCKVFKC  107 (129)
Q Consensus        52 ~~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~--g~---~~~~rC~~CnG~Glv~-----Cp~C~G~~~  107 (129)
                      ....|..|+|+|.     ..|+.|+|+|+++...  +.   .....|+.|+|.|.++     |+.|.|.+.
T Consensus        37 r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~  107 (248)
T 1nlt_A           37 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKV  107 (248)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCE
T ss_pred             EEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCce
Confidence            5579999999996     6899999999876432  22   3467899999999665     999998763

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.01  E-value=4.4e-06  Score=54.89  Aligned_cols=39  Identities=31%  Similarity=0.750  Sum_probs=33.1

Q ss_pred             cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|+.|+|+|.+           +|+.|+|+|+++       ..+|+.|+|.|.+.
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~G~~~   77 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-------SSBCGGGTTSSEEE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-------CCcCCCCCCeEEEe
Confidence            4689999999974           799999999975       35899999999874

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=1e-05  Score=56.16  Aligned_cols=39  Identities=31%  Similarity=0.747  Sum_probs=33.4

Q ss_pred             cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+           +|+.|+|+|+++       ..+|+.|+|.|.+.
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------ISPCVVCRGAGQAK   94 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------SSCCSSSSSCSEEC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------CCcCCCCCCeeEEE
Confidence            4689999999964           799999999976       35899999999874

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.24  E-value=0.00013  Score=57.82  Aligned_cols=41  Identities=32%  Similarity=0.669  Sum_probs=33.4

Q ss_pred             cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|.+               +|+.|+|+|+++..     ..+|+.|+|.|.+.
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~-----~~~C~~C~G~g~~~  109 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP-----KDRCKSCNGKKVEN  109 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT-----TSBCSSSTTSCEEE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc-----CCCCcccCCCceEe
Confidence            4789999999953               69999999987632     35899999999874

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.03  E-value=0.00035  Score=44.24  Aligned_cols=26  Identities=31%  Similarity=0.680  Sum_probs=15.4

Q ss_pred             cccCCCCCCcCee---eCCCCCCCceEEe
Q 032984           53 GIMCESCNGKGWL---VCDFCGGQKTNVK   78 (129)
Q Consensus        53 ~~~C~~C~G~G~v---~C~~C~GSG~v~~   78 (129)
                      ...|+.|+|+|.+   .|+.|+|+|.+..
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~   37 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence            3456666666663   5666666665543

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.91  E-value=0.0005  Score=43.48  Aligned_cols=26  Identities=23%  Similarity=0.686  Sum_probs=15.0

Q ss_pred             cccCCCCCCcCee---eCCCCCCCceEEe
Q 032984           53 GIMCESCNGKGWL---VCDFCGGQKTNVK   78 (129)
Q Consensus        53 ~~~C~~C~G~G~v---~C~~C~GSG~v~~   78 (129)
                      ...|+.|+|+|.+   +|+.|+|+|++..
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEE
Confidence            3456666666663   4666666665543

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.16  E-value=0.0034  Score=39.60  Aligned_cols=28  Identities=25%  Similarity=0.548  Sum_probs=23.2

Q ss_pred             eeeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        64 ~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ..+|+.|+|+|.+.       ..+|+.|+|.|.++
T Consensus         9 ~~~C~~C~GsG~~~-------~~~C~~C~G~G~v~   36 (53)
T 2bx9_A            9 EVACPKCERAGEIE-------GTPCPACSGKGVIL   36 (53)
T ss_dssp             EEECTTTTTSSEET-------TEECTTTTTSSEEE
T ss_pred             cccCCCCcceeccC-------CCCCccCCCCccEE
Confidence            36899999999974       25899999999875

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.07  E-value=0.0025  Score=40.23  Aligned_cols=27  Identities=30%  Similarity=0.730  Sum_probs=23.0

Q ss_pred             eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        65 v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      .+|+.|+|+|+++       ..+|+.|+|.|++.
T Consensus        10 ~~C~~C~GsG~~i-------~~~C~~C~G~G~v~   36 (53)
T 3lcz_A           10 TTCPNCNGSGREE-------PEPCPKCLGKGVIL   36 (53)
T ss_dssp             EECTTTTTSCEET-------TEECTTTTTSSEEE
T ss_pred             ccCcCCcccccCC-------CCcCCCCCCcEEEE
Confidence            5899999999976       26899999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.91
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	98.84
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.92
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.69
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	93.21

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=6.5e-10  Score=73.29  Aligned_cols=57  Identities=28%  Similarity=0.642  Sum_probs=48.0

Q ss_pred             ccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccceeE
Q 032984           52 VGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (129)
Q Consensus        52 ~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~v  108 (129)
                      ....|+.|+|+|.      ..|+.|+|+|++....+. .....|+.|+|.|.++   |+.|.|.+.|
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v   76 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeECCCCCCCCCCceEe
Confidence            6789999999986      579999999998665544 4567899999999985   9999998765

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=9.4e-10  Score=71.91  Aligned_cols=56  Identities=29%  Similarity=0.710  Sum_probs=45.7

Q ss_pred             cccCCCCCCcCe-----eeCCCCCCCceEEecc--CC---ceeeeCcccccccee-----eCCCCccceeE
Q 032984           53 GIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYV-----LCSKCKVFKCV  108 (129)
Q Consensus        53 ~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~--g~---~~~~rC~~CnG~Glv-----~Cp~C~G~~~v  108 (129)
                      .+.|+.|+|+|.     ..|..|+|+|+++...  +.   ....+|+.|+|.|.+     .|+.|.|.+.|
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v   72 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVE   72 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEE
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEe
Confidence            468999999996     4699999999977542  22   356789999999987     49999998765

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=3.8e-06  Score=54.67  Aligned_cols=40  Identities=30%  Similarity=0.690  Sum_probs=33.7

Q ss_pred             ccccCCCCCCcCe-----------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           52 VGIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        52 ~~~~C~~C~G~G~-----------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ....|..|+|.|.           .+|+.|+|+|+++       ..+|+.|+|.|.|.
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i-------~~~C~~C~G~G~v~   77 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-------SSBCGGGTTSSEEE
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeEC-------CCCCCCCCCceEee
Confidence            3467999999997           3799999999986       24899999999874

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=9.4e-06  Score=52.28  Aligned_cols=41  Identities=32%  Similarity=0.675  Sum_probs=33.4

Q ss_pred             cccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984           53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (129)
Q Consensus        53 ~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~   98 (129)
                      ...|..|+|+|+               .+|+.|+|+|+++..     ..+|+.|+|.|.+.
T Consensus        18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~-----~~~C~~C~G~g~v~   73 (74)
T d1nlta3          18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP-----KDRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT-----TSBCSSSTTSCEEE
T ss_pred             CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCC-----CCCCCCCCCeeEeC
Confidence            457999999996               369999999987642     34899999999863

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=93.21  E-value=0.0027  Score=40.57  Aligned_cols=53  Identities=25%  Similarity=0.502  Sum_probs=38.1

Q ss_pred             ccCCCCCCcCe---------eeCCCCCCCceEEecc-----CCceeeeCcccccccee---eCCCCccce
Q 032984           54 IMCESCNGKGW---------LVCDFCGGQKTNVKAQ-----NNRIYRRCPTCRAVGYV---LCSKCKVFK  106 (129)
Q Consensus        54 ~~C~~C~G~G~---------v~C~~C~GSG~v~~~~-----g~~~~~rC~~CnG~Glv---~Cp~C~G~~  106 (129)
                      ..|..|+|.+.         ..|..|+|++......     +...-..|..|.+.|..   .|..|.+.+
T Consensus        12 ~~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~g   81 (90)
T d1m1qa_          12 GGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDG   81 (90)
T ss_dssp             TCGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSC
T ss_pred             CCCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCC
Confidence            36999999885         2599999998754322     12234678888888865   499998754