Citrus Sinensis ID: 033000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKCKTPRE
Secondary Structure (PSIPRED)
cccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccEEccccccccEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccc
Coil and Loop (DISEMBL)
mslpggdwmcaacqhqnfkkreacqrcgypkyggpdvstylcnrtevlagdwyctamncgahnyasrpncyrcgaaktDYACANMmaygtdgsvppgwksgdwicnrmgcgvhnyasrmvcykcktpre
Flexible Loop (DISEMBL)
MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHnyasrmvcykcktpre
Low Complexity Region (SEG)
MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKCKTPRE
Disordered region (IsUnstruct)
******DWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKC*****
Disordered Region (DISOPRED)
**LPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKCKTP**
Disordered Region (DISEMBL)
MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKCKTPRE
Disordered Region (DISPRO)
*****GDWMCAACQHQNFKKREACQRCGY*****************VLAGDWYCTAMNCGAHNYASRPNCYRCGA**********************WKSGDWICNRMGCGVHNYASRMVCYKCK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKCKTPRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
O13801	604	Uncharacterized RNA-bindi	yes	no	0.922	0.197	0.283	7e-08
Q5ZLX5	334	Zinc finger Ran-binding d	yes	no	0.612	0.236	0.397	1e-05
Q19QU3	328	Zinc finger Ran-binding d	yes	no	0.612	0.240	0.386	6e-05
O95218	330	Zinc finger Ran-binding d	yes	no	0.612	0.239	0.386	6e-05
Q5R580	320	Zinc finger Ran-binding d	yes	no	0.612	0.246	0.386	6e-05
O35986	330	Zinc finger Ran-binding d	yes	no	0.612	0.239	0.386	6e-05
Q9R020	330	Zinc finger Ran-binding d	yes	no	0.612	0.239	0.386	6e-05
P70501	852	RNA-binding protein 10 OS	no	no	0.178	0.026	0.6	0.0005
Q99KG3	930	RNA-binding protein 10 OS	no	no	0.178	0.024	0.6	0.0005
P98175	930	RNA-binding protein 10 OS	no	no	0.178	0.024	0.6	0.0005

>sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.04c PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   GDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRT---EVLAGDWYCTAMNCGAH 62
           GDW C  C   NF++R +C RC +P  G   VS    + T   +   G+ Y    +    
Sbjct: 345 GDWNCPMCGFSNFQRRTSCFRCSFP--GPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  NYASRPNCYRCGAAKTDYACAN--------MMAYGTDGSVPPGWKSGDWICNRMGCGVHN 114
           NY    +       ++D    N          +    G+VP  +++GDW C   GCG HN
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVP--FRAGDWKCGSEGCGYHN 460

Query: 115 YASRMVCYKCKTPR 128
           +A  + C +C   R
Sbjct: 461 FAKNVCCLRCGASR 474

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus GN=ZRANB2 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 47  VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKS------ 100
           V  GDW C    CG  N+A R +C RCG  KT  A   M A GT+       KS      
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKM-MKAGGTEIGKTLAEKSRGLFSA 66

Query: 101 GDWICNRMGCGVHNYASRMVCYKCKTPR 128
            DW C    CG  N+A R  C  C TP+
Sbjct: 67  NDWQCK--TCGNVNWARRSECNMCNTPK 92

May regulate alternative splicing by interfering with constitutive 5'-splice site selection.

Gallus gallus (taxid: 9031)

>sp|Q19QU3|ZRAB2_PIG Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa GN=ZRANB2 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 47  VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKS------ 100
           V  GDW C    CG  N+A R +C RCG  KT  A   M A GT+       KS      
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKM-MKAGGTEIGKTLAEKSRGLFSA 66

Query: 101 GDWICNRMGCGVHNYASRMVCYKCKTPR 128
            DW C    C   N+A R  C  C TP+
Sbjct: 67  NDWQCK--TCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Sus scrofa (taxid: 9823)

>sp|O95218|ZRAB2_HUMAN Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens GN=ZRANB2 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 47  VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKS------ 100
           V  GDW C    CG  N+A R +C RCG  KT  A   M A GT+       KS      
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKM-MKAGGTEIGKTLAEKSRGLFSA 66

Query: 101 GDWICNRMGCGVHNYASRMVCYKCKTPR 128
            DW C    C   N+A R  C  C TP+
Sbjct: 67  NDWQCK--TCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Homo sapiens (taxid: 9606)

>sp|Q5R580|ZRAB2_PONAB Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii GN=ZRANB2 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 47  VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKS------ 100
           V  GDW C    CG  N+A R +C RCG  KT  A   M A GT+       KS      
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKM-MKAGGTEIGKTLAEKSRGLFSA 66

Query: 101 GDWICNRMGCGVHNYASRMVCYKCKTPR 128
            DW C    C   N+A R  C  C TP+
Sbjct: 67  NDWQCK--TCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Pongo abelii (taxid: 9601)

>sp|O35986|ZRAB2_RAT Zinc finger Ran-binding domain-containing protein 2 OS=Rattus norvegicus GN=Zranb2 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 47  VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKS------ 100
           V  GDW C    CG  N+A R +C RCG  KT  A   M A GT+       KS      
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKM-MKAGGTEIGKTLAEKSRGLFSA 66

Query: 101 GDWICNRMGCGVHNYASRMVCYKCKTPR 128
            DW C    C   N+A R  C  C TP+
Sbjct: 67  NDWQCK--TCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Rattus norvegicus (taxid: 10116)

>sp|Q9R020|ZRAB2_MOUSE Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus GN=Zranb2 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 47  VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKS------ 100
           V  GDW C    CG  N+A R +C RCG  KT  A   M A GT+       KS      
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKM-MKAGGTEIGKTLAEKSRGLFSA 66

Query: 101 GDWICNRMGCGVHNYASRMVCYKCKTPR 128
            DW C    C   N+A R  C  C TP+
Sbjct: 67  NDWQCK--TCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Mus musculus (taxid: 10090)

>sp|P70501|RBM10_RAT RNA-binding protein 10 OS=Rattus norvegicus GN=Rbm10 PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 7   DWMCAACQHQNFKKREACQRCGYPK 31
           DW+C  C  QNFK+RE C +CG PK
Sbjct: 139 DWLCNKCGVQNFKRREKCFKCGVPK 163

Not known. Binds to RNA homopolymers, with a preference for poly(G) and poly(U) and little for poly(A).

Rattus norvegicus (taxid: 10116)

>sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10 OS=Mus musculus GN=Rbm10 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 7   DWMCAACQHQNFKKREACQRCGYPK 31
           DW+C  C  QNFK+RE C +CG PK
Sbjct: 216 DWLCNKCGVQNFKRREKCFKCGVPK 240

Not known. Binds to RNA homopolymers, with a preference for poly(G) and poly(U) and little for poly(A).

Mus musculus (taxid: 10090)

>sp|P98175|RBM10_HUMAN RNA-binding protein 10 OS=Homo sapiens GN=RBM10 PE=1 SV=3

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 7   DWMCAACQHQNFKKREACQRCGYPK 31
           DW+C  C  QNFK+RE C +CG PK
Sbjct: 216 DWLCNKCGVQNFKRREKCFKCGVPK 240

May be involved in post-transcriptional processing, most probably in mRNA splicing. Binds to RNA homopolymers, with a preference for poly(G) and poly(U) and little for poly(A).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
224091300	133	predicted protein [Populus trichocarpa]	0.968	0.939	0.755	1e-50
2760836	676	putative second messenger-dependent prot	1.0	0.190	0.694	3e-50
224122470	144	predicted protein [Populus trichocarpa]	0.976	0.875	0.723	2e-48
357477963	144	Zinc finger protein-like Ser/Thr protein	1.0	0.895	0.725	3e-48
449464598	140	PREDICTED: zinc finger Ran-binding domai	1.0	0.921	0.718	3e-48
79602205	138	Ran BP2/NZF zinc finger-like protein [Ar	1.0	0.934	0.694	7e-48
297822233	138	binding protein [Arabidopsis lyrata subs	1.0	0.934	0.694	9e-48
449526000	140	PREDICTED: LOW QUALITY PROTEIN: zinc fin	1.0	0.921	0.711	1e-47
388521825	140	unknown [Lotus japonicus]	1.0	0.921	0.696	6e-47
356516951	140	PREDICTED: zinc finger Ran-binding domai	1.0	0.921	0.681	4e-46

>gi|224091300|ref|XP_002309220.1| predicted protein [Populus trichocarpa] gi|222855196|gb|EEE92743.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 109/127 (85%), Gaps = 2/127 (1%)

Query: 5   GGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNY 64
           GGDWMC+ACQHQNFKKRE CQRCGYPKYGGPD +TY+CN T+VLAGDWYC+AMNC AHNY
Sbjct: 6   GGDWMCSACQHQNFKKREMCQRCGYPKYGGPDPATYICNATKVLAGDWYCSAMNCQAHNY 65

Query: 65  ASRPNCYRCGAAKTDYACANM--MAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCY 122
           ASR +CY CGA + D+A       AYG+DGS PPGWK+GDWIC R+GCGVHNYASRM C+
Sbjct: 66  ASRSSCYNCGALRDDHAAGGYGSNAYGSDGSDPPGWKTGDWICTRLGCGVHNYASRMECF 125

Query: 123 KCKTPRE 129
           KC+TPRE
Sbjct: 126 KCRTPRE 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2760836|gb|AAB95304.1| putative second messenger-dependent protein kinase [Arabidopsis thaliana]

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 109/134 (81%), Gaps = 5/134 (3%)

Query: 1   MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCG 60
           MS  GGDW+C ACQH NFKKRE+CQ+CGYPK+GG DVSTYL NRTEV+AGDWYC A+NCG
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query: 61  AHNYASRPNCYRCGAAKTDYAC----ANMMAYGTDGSV-PPGWKSGDWICNRMGCGVHNY 115
           +HNYASR +CYRCG  K +Y      A M+AYG DG+  PPGWK+GDW+C R+GCGVHNY
Sbjct: 61  SHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGNDGAACPPGWKTGDWVCPRVGCGVHNY 120

Query: 116 ASRMVCYKCKTPRE 129
           ASR  C+KCKT R+
Sbjct: 121 ASRAECFKCKTTRD 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122470|ref|XP_002330489.1| predicted protein [Populus trichocarpa] gi|222872423|gb|EEF09554.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 106/130 (81%), Gaps = 4/130 (3%)

Query: 1   MSLP-GGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNC 59
           MSL  GGDWMC+ACQH NFKKRE CQ CGYPKYGGPD +TY+CN T+VLAGDWYCT +NC
Sbjct: 1   MSLTAGGDWMCSACQHLNFKKRETCQLCGYPKYGGPDPATYICNATKVLAGDWYCTVINC 60

Query: 60  GAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRM 119
            AHNYASR +CY CG  K+ +A      Y +DGS PPGWK+GDWICNR GCGVHNYASRM
Sbjct: 61  HAHNYASRSSCYSCGTLKSGHAAG---GYASDGSDPPGWKTGDWICNRSGCGVHNYASRM 117

Query: 120 VCYKCKTPRE 129
            CY+C+TPRE
Sbjct: 118 ECYRCRTPRE 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477963|ref|XP_003609267.1| Zinc finger protein-like Ser/Thr protein kinase-like protein [Medicago truncatula] gi|355510322|gb|AES91464.1| Zinc finger protein-like Ser/Thr protein kinase-like protein [Medicago truncatula]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 107/135 (79%), Gaps = 6/135 (4%)

Query: 1   MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCG 60
           MS  GGDWMC AC+H NFKKREACQ CGYPKYGGPD STY  NRTE LAGDW+CT+MNCG
Sbjct: 5   MSWSGGDWMCGACEHINFKKREACQNCGYPKYGGPDPSTYRYNRTETLAGDWFCTSMNCG 64

Query: 61  AHNYASRPNCYRCGAAKTDYAC---ANMM---AYGTDGSVPPGWKSGDWICNRMGCGVHN 114
           AHNYASR NCYRCGA K  Y+     NM+    YG+D S PPGWKSGDWIC R+GCG+HN
Sbjct: 65  AHNYASRSNCYRCGAFKDPYSSGYGGNMVGSGGYGSDCSSPPGWKSGDWICPRIGCGIHN 124

Query: 115 YASRMVCYKCKTPRE 129
           YASR  CYKCK PR+
Sbjct: 125 YASRTECYKCKMPRD 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464598|ref|XP_004150016.1| PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cucumis sativus]

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 108/135 (80%), Gaps = 6/135 (4%)

Query: 1   MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCG 60
           MS   GDW+C  CQ+ NFKKREAC RCGYPKYGGPD STY  N+TE LAGDWYCT ++CG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCYRCGAAKTDYA---CANMMA---YGTDGSVPPGWKSGDWICNRMGCGVHN 114
           AHNYASRPNC+RCGA K+ Y     A MM    YG+D S+PPGWKSGDWIC RMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 115 YASRMVCYKCKTPRE 129
           YASRM C+KCKTPR+
Sbjct: 121 YASRMECFKCKTPRD 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79602205|ref|NP_973537.2| Ran BP2/NZF zinc finger-like protein [Arabidopsis thaliana] gi|48310248|gb|AAT41783.1| At2g26695 [Arabidopsis thaliana] gi|50198944|gb|AAT70475.1| At2g26695 [Arabidopsis thaliana] gi|330252782|gb|AEC07876.1| Ran BP2/NZF zinc finger-like protein [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 109/134 (81%), Gaps = 5/134 (3%)

Query: 1   MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCG 60
           MS  GGDW+C ACQH NFKKRE+CQ+CGYPK+GG DVSTYL NRTEV+AGDWYC A+NCG
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query: 61  AHNYASRPNCYRCGAAKTDYA----CANMMAYGTDGSV-PPGWKSGDWICNRMGCGVHNY 115
           +HNYASR +CYRCG  K +Y      A M+AYG DG+  PPGWK+GDW+C R+GCGVHNY
Sbjct: 61  SHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGNDGAACPPGWKTGDWVCPRVGCGVHNY 120

Query: 116 ASRMVCYKCKTPRE 129
           ASR  C+KCKT R+
Sbjct: 121 ASRAECFKCKTTRD 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822233|ref|XP_002878999.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297324838|gb|EFH55258.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 108/134 (80%), Gaps = 5/134 (3%)

Query: 1   MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCG 60
           MS  GGDW+C ACQH NFKKRE+CQ+CGYPK+GG DVSTYL NRTEV+AGDWYC A+NCG
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query: 61  AHNYASRPNCYRCGAAKTDYA----CANMMAYGTDGSV-PPGWKSGDWICNRMGCGVHNY 115
           +HNYASR +CYRCG  K +Y      A M+AYG DG+  PPGWK+GDW C R+GCGVHNY
Sbjct: 61  SHNYASRTSCYRCGMVKVEYTEQYYGAQMVAYGNDGTACPPGWKTGDWFCPRVGCGVHNY 120

Query: 116 ASRMVCYKCKTPRE 129
           ASR  C+KCKT R+
Sbjct: 121 ASRAECFKCKTTRD 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526000|ref|XP_004170003.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger Ran-binding domain-containing protein 2-like [Cucumis sativus]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 107/135 (79%), Gaps = 6/135 (4%)

Query: 1   MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCG 60
           MS   GDW+C  CQ+ NF KREAC RCGYPKYGGPD STY  N+TE LAGDWYCT ++CG
Sbjct: 1   MSWSAGDWICNVCQNVNFXKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCYRCGAAKTDYA---CANMMA---YGTDGSVPPGWKSGDWICNRMGCGVHN 114
           AHNYASRPNC+RCGA K+ Y     A MM    YG+D S+PPGWKSGDWIC RMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 115 YASRMVCYKCKTPRE 129
           YASRM C+KCKTPR+
Sbjct: 121 YASRMECFKCKTPRD 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521825|gb|AFK48974.1| unknown [Lotus japonicus]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 103/135 (76%), Gaps = 6/135 (4%)

Query: 1   MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCG 60
           MS  GGDWMC ACQH NFKKRE CQ C YPKYGGPD +TY  NRTE LAGDWYC+AMNCG
Sbjct: 1   MSWSGGDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCG 60

Query: 61  AHNYASRPNCYRCGAAKTDYAC------ANMMAYGTDGSVPPGWKSGDWICNRMGCGVHN 114
           AHNYASR NCYRCG  + DY+       A    YG+D S PPGWK+GDWIC R+GCGVHN
Sbjct: 61  AHNYASRTNCYRCGTMRDDYSSGYGGNMAGSGGYGSDCSFPPGWKNGDWICPRIGCGVHN 120

Query: 115 YASRMVCYKCKTPRE 129
           YASR  C+KCK PR+
Sbjct: 121 YASRAECFKCKMPRD 135

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516951|ref|XP_003527154.1| PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Glycine max]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 105/135 (77%), Gaps = 6/135 (4%)

Query: 1   MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCG 60
           MS  GGDWMC ACQH NFKKR+ACQ C YPK+GGPD +TY  N TE LAGDWYCTAMNCG
Sbjct: 1   MSWSGGDWMCGACQHINFKKRDACQSCAYPKFGGPDPTTYRYNSTETLAGDWYCTAMNCG 60

Query: 61  AHNYASRPNCYRCGAAKTDYAC---ANMM---AYGTDGSVPPGWKSGDWICNRMGCGVHN 114
           AHN+ASR +C+RCGA K  Y+C    NM     YG+D + PPGWK+GDWIC R+GCGVHN
Sbjct: 61  AHNFASRSSCFRCGALKDGYSCRFGGNMDGSGGYGSDCNYPPGWKTGDWICTRIGCGVHN 120

Query: 115 YASRMVCYKCKTPRE 129
           YA+R  C+KCKTPR 
Sbjct: 121 YANRTECFKCKTPRN 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:1006230021	138	AT2G26695 [Arabidopsis thalian	1.0	0.934	0.694	3.4e-54
TAIR|locus:2179479	170	AT5G25490 [Arabidopsis thalian	0.666	0.505	0.41	4.8e-31
TAIR|locus:2093317	164	AT3G15680 [Arabidopsis thalian	0.775	0.609	0.423	1.3e-20
ASPGD|ASPL0000012537	609	AN8055 [Emericella nidulans (t	0.302	0.064	0.45	6.1e-13
TAIR|locus:2198095	455	AT1G48570 [Arabidopsis thalian	0.480	0.136	0.397	9.3e-12
UNIPROTKB|G4MV21	629	MGG_07327 "Asparagine-rich pro	0.372	0.076	0.395	1.6e-11
TAIR|locus:2827841	268	AT2G17975 [Arabidopsis thalian	0.775	0.373	0.310	4.7e-11
POMBASE|SPAC17H9.04c	604	SPAC17H9.04c "RNA-binding prot	0.922	0.197	0.283	6.4e-09
ZFIN|ZDB-GENE-040426-2743	314	zranb2 "zinc finger, RAN-bindi	0.589	0.242	0.4	1.1e-08
SGD|S000002326	719	NRP1 "Putative RNA binding pro	0.294	0.052	0.447	0.00087

TAIR|locus:1006230021 AT2G26695 [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 93/134 (69%), Positives = 109/134 (81%)

Query:     1 MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCG 60
             MS  GGDW+C ACQH NFKKRE+CQ+CGYPK+GG DVSTYL NRTEV+AGDWYC A+NCG
Sbjct:     1 MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query:    61 AHNYASRPNCYRCGAAKTDYA----CANMMAYGTDGSV-PPGWKSGDWICNRMGCGVHNY 115
             +HNYASR +CYRCG  K +Y      A M+AYG DG+  PPGWK+GDW+C R+GCGVHNY
Sbjct:    61 SHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGNDGAACPPGWKTGDWVCPRVGCGVHNY 120

Query:   116 ASRMVCYKCKTPRE 129
             ASR  C+KCKT R+
Sbjct:   121 ASRAECFKCKTTRD 134

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2179479 AT5G25490 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 41/100 (41%), Positives = 61/100 (61%)

Query:     1 MSLPGGDWMCAACQHQNFKKREACQRCGYPK-----------YGGPDVSTYLCNRT--EV 47
             M+ PG DW C  C H NF++R++CQRC  P+           +GG  VS+     T  +V
Sbjct:     1 MNRPG-DWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDV 59

Query:    48 LAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMA 87
               GDWYC   +CG HN+A+R +C++CGAAK +++C++  A
Sbjct:    60 RPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAA 99

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2093317 AT3G15680 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 50/118 (42%), Positives = 64/118 (54%)

Query:    29 YPKYGGPDVSTY-LCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMA 87
             +  +GG  +S +     ++V  GDWYCT  NCG HN+ASR  C++CG  K D   A    
Sbjct:    41 FGNFGGRAMSAFGFTTGSDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFK-DETGAGGGG 99

Query:    88 YGTDG----------SVPPG------WKSGDWICNRMGCGVHNYASRMVCYKCKTPRE 129
              G  G          S  PG      WKSGDWIC R+GC  HN+ASRM C++C  PR+
Sbjct:   100 GGIGGPAMFDADIMRSRVPGNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

ASPGD|ASPL0000012537 AN8055 [Emericella nidulans (taxid:162425)]

 Score = 109 (43.4 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query:    89 GTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKCKTPR 128
             G +G V P +++GDW C   GCG HN+A  + C +C  PR
Sbjct:   415 GGNGGVVP-FRAGDWKCGSEGCGYHNFAKNINCLRCGAPR 453

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

TAIR|locus:2198095 AT1G48570 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
 Identities = 27/68 (39%), Positives = 35/68 (51%)

Query:     6 GDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYA 65
             GDW+C  C   NF + ++C +C   K  GP   T + N  E+  GDW CT   CG  N+A
Sbjct:   338 GDWLCPECSFLNFTRNQSCLKC---KAKGPK-KTSMVNIVEMKKGDWNCTG--CGYMNFA 391

Query:    66 SRPNCYRC 73
             S   C  C
Sbjct:   392 SNKQCREC 399

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|G4MV21 MGG_07327 "Asparagine-rich protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 97 (39.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 19/48 (39%), Positives = 23/48 (47%)

Query:    49 AGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPP 96
             AGDW C    CG HN+A    C RCGA++   A      Y +    PP
Sbjct:   440 AGDWKCGNEICGYHNFAKNVCCLRCGASRATAAVVGDSGYPSPMVEPP 487

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2827841 AT2G17975 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 37/119 (31%), Positives = 55/119 (46%)

Query:     6 GDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYA 65
             GDW+C  C + N+  RE C++CG  K    +V+         + G     ++    H + 
Sbjct:    50 GDWICTGCTNNNYASREKCKKCGQSK----EVAAL---SALAIPG----ASLQTHLHYFT 98

Query:    66 SRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKC 124
               P  +    +   ++ A   A     SV   W+SGDWIC    CG HNY+SR+ C KC
Sbjct:    99 RGPESHDQPGSLLAFSNATNQA-----SVHKEWRSGDWICR---CGFHNYSSRIQCKKC 149

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

POMBASE|SPAC17H9.04c SPAC17H9.04c "RNA-binding protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 143 (55.4 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 38/134 (28%), Positives = 57/134 (42%)

Query:     6 GDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRT---EVLAGDWYCTAMNCGAH 62
             GDW C  C   NF++R +C RC +P  G   VS    + T   +   G+ Y    +    
Sbjct:   345 GDWNCPMCGFSNFQRRTSCFRCSFP--GPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query:    63 NYASRPNCYRCGAAKTDYACAN--------MMAYGTDGSVPPGWKSGDWICNRMGCGVHN 114
             NY    +       ++D    N          +    G+VP  +++GDW C   GCG HN
Sbjct:   403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVP--FRAGDWKCGSEGCGYHN 460

Query:   115 YASRMVCYKCKTPR 128
             +A  + C +C   R
Sbjct:   461 FAKNVCCLRCGASR 474

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2743 zranb2 "zinc finger, RAN-binding domain containing 2" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 34/85 (40%), Positives = 41/85 (48%)

Query:    50 GDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTD-GSV----PPG-WKSGDW 103
             GDW C    CG  N+A R +C RCG  KT  A   M A GT+ G        G + + DW
Sbjct:    11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEA-KMMKAGGTEIGKTLAEKSRGLFSANDW 69

Query:   104 ICNRMGCGVHNYASRMVCYKCKTPR 128
              C    CG  N+A R  C  C TP+
Sbjct:    70 QCKT--CGNVNWARRSECNMCNTPK 92

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

SGD|S000002326 NRP1 "Putative RNA binding protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 96 (38.9 bits), Expect = 0.00087, P = 0.00087
 Identities = 17/38 (44%), Positives = 19/38 (50%)

Query:     1 MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVS 38
             M    GDW C+ C + NF K   C RCG PK    D S
Sbjct:   578 MPFRAGDWKCSTCTYHNFAKNVVCLRCGGPKSISGDAS 615

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.1028.1 hypothetical protein (133 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
smart00547	25	smart00547, ZnF_RBZ, Zinc finger domain	0.004

>gnl|CDD|197784 smart00547, ZnF_RBZ, Zinc finger domain

 Score = 32.3 bits (74), Expect = 0.004
 Identities = 13/25 (52%), Positives = 13/25 (52%)

Query: 6  GDWMCAACQHQNFKKREACQRCGYP 30
          GDW C AC   NF  R  C  CG P
Sbjct: 1  GDWECPACTFLNFASRSKCFACGAP 25

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP. Length = 25

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	99.75
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	99.7
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	99.02
KOG1995	351	consensus Conserved Zn-finger protein [General fun	98.98
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	98.82
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	98.55
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	98.35
KOG1995	351	consensus Conserved Zn-finger protein [General fun	97.72
PF12773	50	DZR: Double zinc ribbon	97.01
PRK14559	645	putative protein serine/threonine phosphatase; Pro	95.95
PF12773	50	DZR: Double zinc ribbon	94.59
KOG4477	228	consensus RING1 interactor RYBP and related Zn-fin	93.75
PF13248	26	zf-ribbon_3: zinc-ribbon domain	92.17
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	92.05
PF13248	26	zf-ribbon_3: zinc-ribbon domain	91.42
KOG4477	228	consensus RING1 interactor RYBP and related Zn-fin	90.96
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	89.42
PRK14559	645	putative protein serine/threonine phosphatase; Pro	87.39
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	85.96
PRK04136	48	rpl40e 50S ribosomal protein L40e; Provisional	84.12
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	83.27
PRK14714	1337	DNA polymerase II large subunit; Provisional	82.05

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=99.75  E-value=1.9e-18  Score=134.45  Aligned_cols=121  Identities=34%  Similarity=0.722  Sum_probs=93.4

Q ss_pred             CCC-CeEcCccCccccccccccccCCCCCCCCCCCc------------ccccCCccccCCCcccCCCCCCCeecCCCcCc
Q 033000            4 PGG-DWMCAACQHQNFKKREACQRCGYPKYGGPDVS------------TYLCNRTEVLAGDWYCTAMNCGAHNYASRPNC   70 (129)
Q Consensus         4 ~~g-dW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~------------~~~~~~~~~~~gdW~C~~~~C~~~N~~~~~~C   70 (129)
                      ++| ||.|..|.++||..+..|.+|..+++. .++.            .+.+....+++|||.|+  .|+++||++|..|
T Consensus         5 r~g~~~~~~~~~~~~~~~~~~c~~c~~~~~~-i~~~~~~~~tid~~~~~~~~~~~~~~pgdw~c~--~c~~~n~arr~~c   81 (280)
T KOG4198|consen    5 RKGVDSLKRLCLHVNFDERDSCGRCSLSRAY-IQPDDDEARTIDVMRLLLTNSKDPPRPGDWNCP--LCGFHNSARRLLC   81 (280)
T ss_pred             cccCCcccchhhhhccccccccccccCCccc-ccccccccCccchhhhcccccCCCCCCcccccC--ccchhhHHHhhhc
Confidence            345 999999999999999999999999943 1111            11235788999999999  8999999999999


Q ss_pred             cccCCCCCCcccccc-c-----------ccCCC------CCCC---------CCCccCceeecCCCCCceeccCCccccC
Q 033000           71 YRCGAAKTDYACANM-M-----------AYGTD------GSVP---------PGWKSGDWICNRMGCGVHNYASRMVCYK  123 (129)
Q Consensus        71 ~~C~~~~~~~~~~~~-~-----------~~g~~------~~~~---------~~~~~gdW~C~~~~C~~~N~a~r~~C~~  123 (129)
                      ++|+.++++...... +           .+...      ..+.         ..+++|||+|+  .|+||||+++..|++
T Consensus        82 ~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~~~~r~~~~GDW~Cp--~C~fhNfarn~~C~r  159 (280)
T KOG4198|consen   82 FRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNNKPKRPWRSGDWECP--GCNFHNFARNSECFR  159 (280)
T ss_pred             ceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccccccCCccccCcccC--CCCceeccccchhhh
Confidence            999999877655310 0           11100      0000         13789999999  799999999999999


Q ss_pred             CCCCCC
Q 033000          124 CKTPRE  129 (129)
Q Consensus       124 C~~pk~  129 (129)
                      |+++++
T Consensus       160 C~~~r~  165 (280)
T KOG4198|consen  160 CGAKRP  165 (280)
T ss_pred             cCCcCc
Confidence            999875

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=99.70  E-value=2.2e-17  Score=128.55  Aligned_cols=122  Identities=35%  Similarity=0.772  Sum_probs=89.8

Q ss_pred             CCCCCeEcCccCccccccccccccCCCCCCCCCC----Cccc--------cc---------------CC-----ccccCC
Q 033000            3 LPGGDWMCAACQHQNFKKREACQRCGYPKYGGPD----VSTY--------LC---------------NR-----TEVLAG   50 (129)
Q Consensus         3 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~----~~~~--------~~---------------~~-----~~~~~g   50 (129)
                      .++|||.|+.|+++||++|..|++|+.+++.-..    +...        .+               .+     .+.++|
T Consensus        60 ~~pgdw~c~~c~~~n~arr~~c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~~~~r~~~~G  139 (280)
T KOG4198|consen   60 PRPGDWNCPLCGFHNSARRLLCFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNNKPKRPWRSG  139 (280)
T ss_pred             CCCcccccCccchhhHHHhhhcceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccccccCCcccc
Confidence            4689999999999999999999999998864211    1100        00               11     147899


Q ss_pred             CcccCCCCCCCeecCCCcCccccCCCCCCccc-------cc---------cc-------------ccCC---------C-
Q 033000           51 DWYCTAMNCGAHNYASRPNCYRCGAAKTDYAC-------AN---------MM-------------AYGT---------D-   91 (129)
Q Consensus        51 dW~C~~~~C~~~N~~~~~~C~~C~~~~~~~~~-------~~---------~~-------------~~g~---------~-   91 (129)
                      ||+|+  .|++|||+++..|++|+++++..+.       ..         ..             .++.         . 
T Consensus       140 DW~Cp--~C~fhNfarn~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~~r~~~~~~~~~~~~d~~~~  217 (280)
T KOG4198|consen  140 DWECP--GCNFHNFARNSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESLLRCNARGEMSESRVDGADV  217 (280)
T ss_pred             CcccC--CCCceeccccchhhhcCCcCcccccccccccccccccccccccccccceecccchhhcccCcccccccccccc
Confidence            99999  9999999999999999999987441       00         00             0000         0 


Q ss_pred             ---------------CCCCCCCccCceeecCCCCCceeccCCccccCCCCCC
Q 033000           92 ---------------GSVPPGWKSGDWICNRMGCGVHNYASRMVCYKCKTPR  128 (129)
Q Consensus        92 ---------------~~~~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~pk  128 (129)
                                     ..+....+.+||.|+  .|.++||.++.+|.+|..++
T Consensus       218 ~~~~~~~~e~~~~~~sr~s~~~~dgdw~~~--s~~~~~~r~r~a~~~c~~~~  267 (280)
T KOG4198|consen  218 KGNFSSDDESRLEPLSRGSKSSRDGDWMCE--SCKAENFRRRNACLKCISPR  267 (280)
T ss_pred             cccccccccccccccccCcccccCCCcccc--cccchhhhhhhhhhccccCc
Confidence                           011123678999999  79999999999999998775

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.02  E-value=1.4e-10  Score=61.95  Aligned_cols=30  Identities=40%  Similarity=0.991  Sum_probs=24.8

Q ss_pred             CCCCeEcCccCccccccccccccCCCCCCC
Q 033000            4 PGGDWMCAACQHQNFKKREACQRCGYPKYG   33 (129)
Q Consensus         4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~   33 (129)
                      |+|+|.|+.|+++|++.+..|.+|+++||.
T Consensus         1 k~g~W~C~~C~~~N~~~~~~C~~C~~~rp~   30 (30)
T PF00641_consen    1 KEGDWKCPSCTFMNPASRSKCVACGAPRPG   30 (30)
T ss_dssp             -SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred             CCcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence            579999999999999999999999999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=98.98  E-value=3.5e-10  Score=90.29  Aligned_cols=122  Identities=24%  Similarity=0.379  Sum_probs=83.4

Q ss_pred             CCCCCeEcC--ccCccccccccccccCCCCCCCCC-CCccc-------ccCCccccCCCcccCCCCCCCeecCCCcCccc
Q 033000            3 LPGGDWMCA--ACQHQNFKKREACQRCGYPKYGGP-DVSTY-------LCNRTEVLAGDWYCTAMNCGAHNYASRPNCYR   72 (129)
Q Consensus         3 ~~~gdW~C~--~C~~~Nf~~r~~C~~C~~prp~~~-~~~~~-------~~~~~~~~~gdW~C~~~~C~~~N~~~~~~C~~   72 (129)
                      .+.++|+|+  .|.+.||.++.+|..|+..|.... .+.-+       .-+...+...||.|.  .|.+++|+.+.+|. 
T Consensus        67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~a--kaai~~~agkdf~g-  143 (351)
T KOG1995|consen   67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAA--KAAIEWFAGKDFCG-  143 (351)
T ss_pred             ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhh--hhhhhhhccccccC-
Confidence            346799998  899999999999999999998741 11110       113445556788888  88888888888887 


Q ss_pred             cCCCCCCccc--c-c------------ccccC-------------CC------------------CCCCCCCccCceeec
Q 033000           73 CGAAKTDYAC--A-N------------MMAYG-------------TD------------------GSVPPGWKSGDWICN  106 (129)
Q Consensus        73 C~~~~~~~~~--~-~------------~~~~g-------------~~------------------~~~~~~~~~gdW~C~  106 (129)
                       .+++.....  + +            ..+|+             ..                  .........+||.|+
T Consensus       144 -n~ikvs~a~~r~~ve~~rg~~~~~~g~g~fg~~~~grg~~~G~gg~~~~~~~~~rGg~~~~g~~g~~~~~~~d~Dw~c~  222 (351)
T KOG1995|consen  144 -NTIKVSLAERRTGVESVRGGYPNDGGAGEFGRLRGGRGGPGGPGGGDGEAGKGDRGGVPDGGESGGGNVQDEDGDWDCP  222 (351)
T ss_pred             -CCchhhhhhhccCcccccccccCcCCCCCccccccCCCCCCCCCCccccccccccCCcCCCcccCCccccccccccccc
Confidence             554432111  0 0            00000             00                  000123567899999


Q ss_pred             CCCCCceeccCCccccCCCCCCC
Q 033000          107 RMGCGVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus       107 ~~~C~~~N~a~r~~C~~C~~pk~  129 (129)
                       +.|.++||+++..|++|+++|+
T Consensus       223 -~~c~N~nfa~r~~cnrck~~Kp  244 (351)
T KOG1995|consen  223 -PSCGNRNFAWREECNRCKAPKP  244 (351)
T ss_pred             -ccccccccccccccccccCCCc
Confidence             7899999999999999999985

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.82  E-value=2.2e-09  Score=57.26  Aligned_cols=30  Identities=43%  Similarity=0.947  Sum_probs=24.4

Q ss_pred             cCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000           48 LAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD   79 (129)
Q Consensus        48 ~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~   79 (129)
                      ++|+|.|+  .|+++|++++..|.+|+++||.
T Consensus         1 k~g~W~C~--~C~~~N~~~~~~C~~C~~~rp~   30 (30)
T PF00641_consen    1 KEGDWKCP--SCTFMNPASRSKCVACGAPRPG   30 (30)
T ss_dssp             -SSSEEET--TTTEEEESSSSB-TTT--BTTB
T ss_pred             CCcCccCC--CCcCCchHHhhhhhCcCCCCcC
Confidence            46899999  9999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>smart00547 ZnF_RBZ Zinc finger domain

Probab=98.55  E-value=2.8e-08  Score=51.11  Aligned_cols=26  Identities=50%  Similarity=1.198  Sum_probs=24.5

Q ss_pred             CCeEcCccCccccccccccccCCCCC
Q 033000            6 GDWMCAACQHQNFKKREACQRCGYPK   31 (129)
Q Consensus         6 gdW~C~~C~~~Nf~~r~~C~~C~~pr   31 (129)
                      |||+|+.|+++|++.+..|.+|++|.
T Consensus         1 g~W~C~~C~~~N~~~~~~C~~C~~p~   26 (26)
T smart00547        1 GDWECPACTFLNFASRSKCFACGAPX   26 (26)
T ss_pred             CcccCCCCCCcChhhhccccccCCcC
Confidence            79999999999999999999999873

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>smart00547 ZnF_RBZ Zinc finger domain

Probab=98.35  E-value=2e-07  Score=47.89  Aligned_cols=25  Identities=52%  Similarity=1.285  Sum_probs=23.9

Q ss_pred             CCcccCCCCCCCeecCCCcCccccCCC
Q 033000           50 GDWYCTAMNCGAHNYASRPNCYRCGAA   76 (129)
Q Consensus        50 gdW~C~~~~C~~~N~~~~~~C~~C~~~   76 (129)
                      |+|+|+  .|+++|++.+..|..|++|
T Consensus         1 g~W~C~--~C~~~N~~~~~~C~~C~~p   25 (26)
T smart00547        1 GDWECP--ACTFLNFASRSKCFACGAP   25 (26)
T ss_pred             CcccCC--CCCCcChhhhccccccCCc
Confidence            699999  9999999999999999986

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=97.72  E-value=9.1e-05  Score=59.65  Aligned_cols=33  Identities=42%  Similarity=0.912  Sum_probs=30.3

Q ss_pred             ccCCCcccCCCCCCCeecCCCcCccccCCCCCCc
Q 033000           47 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDY   80 (129)
Q Consensus        47 ~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~   80 (129)
                      ..++||.|+ ..|.++||+.+..|++|.++||..
T Consensus       214 ~~d~Dw~c~-~~c~N~nfa~r~~cnrck~~Kp~~  246 (351)
T KOG1995|consen  214 DEDGDWDCP-PSCGNRNFAWREECNRCKAPKPER  246 (351)
T ss_pred             ccccccccc-ccccccccccccccccccCCCccc
Confidence            566899999 899999999999999999999865

>PF12773 DZR: Double zinc ribbon

Probab=97.01  E-value=0.00076  Score=39.39  Aligned_cols=50  Identities=32%  Similarity=0.672  Sum_probs=42.8

Q ss_pred             cCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCCeecCCCcCccccC
Q 033000           10 CAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCG   74 (129)
Q Consensus        10 C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~   74 (129)
                      |+.|+..|......|..|+++-+..             ....++|+  .|+..|......|..||
T Consensus         1 Cp~Cg~~~~~~~~fC~~CG~~l~~~-------------~~~~~~C~--~Cg~~~~~~~~fC~~CG   50 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPHCGTPLPPP-------------DQSKKICP--NCGAENPPNAKFCPNCG   50 (50)
T ss_pred             CCCcCCcCCccccCChhhcCChhhc-------------cCCCCCCc--CCcCCCcCCcCccCccc
Confidence            7899999999999999999986611             12368999  99999999999999986

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=95.95  E-value=0.0067  Score=52.92  Aligned_cols=50  Identities=30%  Similarity=0.737  Sum_probs=43.7

Q ss_pred             EcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCCeecCCCcCccccCCCCC
Q 033000            9 MCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKT   78 (129)
Q Consensus         9 ~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~   78 (129)
                      .|+.|++.|.....+|.+|+++-...                  .|+  .|+..+......|..||++-.
T Consensus         3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~------------------~Cp--~CG~~~~~~~~fC~~CG~~~~   52 (645)
T PRK14559          3 ICPQCQFENPNNNRFCQKCGTSLTHK------------------PCP--QCGTEVPVDEAHCPNCGAETG   52 (645)
T ss_pred             cCCCCCCcCCCCCccccccCCCCCCC------------------cCC--CCCCCCCcccccccccCCccc
Confidence            69999999999999999998874310                  599  999999999999999998853

>PF12773 DZR: Double zinc ribbon

Probab=94.59  E-value=0.038  Score=32.01  Aligned_cols=50  Identities=28%  Similarity=0.670  Sum_probs=40.6

Q ss_pred             cCCCCCCCeecCCCcCccccCCCCCCcccccccccCCCCCCCCCCccCceeecCCCCCceeccCCccccCCC
Q 033000           54 CTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKCK  125 (129)
Q Consensus        54 C~~~~C~~~N~~~~~~C~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~  125 (129)
                      |+  .|+..|-.....|..||++-+..                  ....+.|+  .|+..|......|..|+
T Consensus         1 Cp--~Cg~~~~~~~~fC~~CG~~l~~~------------------~~~~~~C~--~Cg~~~~~~~~fC~~CG   50 (50)
T PF12773_consen    1 CP--HCGTPNPDDAKFCPHCGTPLPPP------------------DQSKKICP--NCGAENPPNAKFCPNCG   50 (50)
T ss_pred             CC--CcCCcCCccccCChhhcCChhhc------------------cCCCCCCc--CCcCCCcCCcCccCccc
Confidence            66  89999999999999999886511                  13458899  69999999999998885

>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]

Probab=93.75  E-value=0.028  Score=42.00  Aligned_cols=29  Identities=28%  Similarity=0.628  Sum_probs=26.2

Q ss_pred             CCCeEcCccCccccccccccccCCCCCCC
Q 033000            5 GGDWMCAACQHQNFKKREACQRCGYPKYG   33 (129)
Q Consensus         5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~   33 (129)
                      .|-|.|..|+|.|-+-..+|+.|+.-+..
T Consensus        22 eg~WdCsvCTFrNsAeAfkC~vCdvRKGT   50 (228)
T KOG4477|consen   22 EGKWDCSVCTFRNSAEAFKCFVCDVRKGT   50 (228)
T ss_pred             cCceeeeeeeecchhhhhheeeecccccc
Confidence            47899999999999999999999987654

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=92.17  E-value=0.067  Score=27.15  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             eEcCccCccccccccccccCCCC
Q 033000            8 WMCAACQHQNFKKREACQRCGYP   30 (129)
Q Consensus         8 W~C~~C~~~Nf~~r~~C~~C~~p   30 (129)
                      ..|+.|+..+......|..|+++
T Consensus         3 ~~Cp~Cg~~~~~~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGAEIDPDAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCCcCCcccccChhhCCC
Confidence            47999999999999999999875

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=92.05  E-value=0.081  Score=26.23  Aligned_cols=22  Identities=27%  Similarity=0.768  Sum_probs=19.5

Q ss_pred             EcCccCccccccccccccCCCC
Q 033000            9 MCAACQHQNFKKREACQRCGYP   30 (129)
Q Consensus         9 ~C~~C~~~Nf~~r~~C~~C~~p   30 (129)
                      .|+.|+..+......|..|+++
T Consensus         1 ~Cp~CG~~~~~~~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIEDDAKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCCcCcchhhhCCc
Confidence            3889999999999999999875

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=91.42  E-value=0.13  Score=26.11  Aligned_cols=23  Identities=39%  Similarity=0.871  Sum_probs=20.1

Q ss_pred             cccCCCCCCCeecCCCcCccccCCC
Q 033000           52 WYCTAMNCGAHNYASRPNCYRCGAA   76 (129)
Q Consensus        52 W~C~~~~C~~~N~~~~~~C~~C~~~   76 (129)
                      ..|+  .|+..+......|..||++
T Consensus         3 ~~Cp--~Cg~~~~~~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCP--NCGAEIDPDAKFCPNCGAK   25 (26)
T ss_pred             CCCc--ccCCcCCcccccChhhCCC
Confidence            5788  9999999999999999875

>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]

Probab=90.96  E-value=0.097  Score=39.14  Aligned_cols=34  Identities=26%  Similarity=0.623  Sum_probs=28.8

Q ss_pred             CccccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000           44 RTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD   79 (129)
Q Consensus        44 ~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~   79 (129)
                      .....+|.|.|.  .|.|+|-+.+-.|+.|+..+..
T Consensus        17 kp~~Deg~WdCs--vCTFrNsAeAfkC~vCdvRKGT   50 (228)
T KOG4477|consen   17 KPNDDEGKWDCS--VCTFRNSAEAFKCFVCDVRKGT   50 (228)
T ss_pred             CCccccCceeee--eeeecchhhhhheeeecccccc
Confidence            445567899999  9999999999999999877644

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=89.42  E-value=0.22  Score=24.60  Aligned_cols=22  Identities=41%  Similarity=0.942  Sum_probs=18.5

Q ss_pred             ccCCCCCCCeecCCCcCccccCCC
Q 033000           53 YCTAMNCGAHNYASRPNCYRCGAA   76 (129)
Q Consensus        53 ~C~~~~C~~~N~~~~~~C~~C~~~   76 (129)
                      .|+  .|+..+......|..||++
T Consensus         1 ~Cp--~CG~~~~~~~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCP--NCGAEIEDDAKFCPNCGTP   22 (23)
T ss_pred             CCc--ccCCCCCCcCcchhhhCCc
Confidence            377  8999998888899999875

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=87.39  E-value=0.53  Score=41.32  Aligned_cols=48  Identities=27%  Similarity=0.641  Sum_probs=38.8

Q ss_pred             ccCCCCCCCeecCCCcCccccCCCCCCcccccccccCCCCCCCCCCccCceeecCCCCCceeccCCccccCCCCC
Q 033000           53 YCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVHNYASRMVCYKCKTP  127 (129)
Q Consensus        53 ~C~~~~C~~~N~~~~~~C~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~p  127 (129)
                      .|+  .|+..|-.....|.+||++-..                   +    .|+  .|+..|-.....|..|+++
T Consensus         3 ~Cp--~Cg~~n~~~akFC~~CG~~l~~-------------------~----~Cp--~CG~~~~~~~~fC~~CG~~   50 (645)
T PRK14559          3 ICP--QCQFENPNNNRFCQKCGTSLTH-------------------K----PCP--QCGTEVPVDEAHCPNCGAE   50 (645)
T ss_pred             cCC--CCCCcCCCCCccccccCCCCCC-------------------C----cCC--CCCCCCCcccccccccCCc
Confidence            588  9999999999999999876321                   0    388  6999999888899999875

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=85.96  E-value=0.7  Score=24.62  Aligned_cols=25  Identities=32%  Similarity=0.606  Sum_probs=17.7

Q ss_pred             CcccCCCCCCCeecCC--CcCccccCCCC
Q 033000           51 DWYCTAMNCGAHNYAS--RPNCYRCGAAK   77 (129)
Q Consensus        51 dW~C~~~~C~~~N~~~--~~~C~~C~~~~   77 (129)
                      .|+|.  .|+++-...  -..|+.|++++
T Consensus         1 ~~~C~--~CGy~y~~~~~~~~CP~Cg~~~   27 (33)
T cd00350           1 KYVCP--VCGYIYDGEEAPWVCPVCGAPK   27 (33)
T ss_pred             CEECC--CCCCEECCCcCCCcCcCCCCcH
Confidence            38888  888885554  44688887765

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional

Probab=84.12  E-value=0.53  Score=27.54  Aligned_cols=24  Identities=29%  Similarity=0.871  Sum_probs=22.0

Q ss_pred             CCeEcCccCccccccccccccCCC
Q 033000            6 GDWMCAACQHQNFKKREACQRCGY   29 (129)
Q Consensus         6 gdW~C~~C~~~Nf~~r~~C~~C~~   29 (129)
                      ..++|-.|+..|....+.|.+|+.
T Consensus        13 ~k~ICrkC~ARnp~~A~~CRKCg~   36 (48)
T PRK04136         13 NKKICMRCNARNPWRATKCRKCGY   36 (48)
T ss_pred             cccchhcccCCCCccccccccCCC
Confidence            457999999999999999999986

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=83.27  E-value=1.1  Score=24.17  Aligned_cols=26  Identities=35%  Similarity=0.792  Sum_probs=20.2

Q ss_pred             CcccCCCCCCCeecCC--CcCccccCCCCC
Q 033000           51 DWYCTAMNCGAHNYAS--RPNCYRCGAAKT   78 (129)
Q Consensus        51 dW~C~~~~C~~~N~~~--~~~C~~C~~~~~   78 (129)
                      -|.|.  .||++-...  -..|+.|++++.
T Consensus         2 ~~~C~--~CG~i~~g~~~p~~CP~Cg~~~~   29 (34)
T cd00729           2 VWVCP--VCGYIHEGEEAPEKCPICGAPKE   29 (34)
T ss_pred             eEECC--CCCCEeECCcCCCcCcCCCCchH
Confidence            49999  999985543  468999998753

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=82.05  E-value=2.1  Score=40.35  Aligned_cols=52  Identities=29%  Similarity=0.749  Sum_probs=39.9

Q ss_pred             eEcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCCeecCC---CcCccccCCCCCCc
Q 033000            8 WMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYAS---RPNCYRCGAAKTDY   80 (129)
Q Consensus         8 W~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~~N~~~---~~~C~~C~~~~~~~   80 (129)
                      =.|+.|+...+.  ..|..|+++...                 .+.|+  .|+...-..   +..|..|+.+-...
T Consensus       668 rkCPkCG~~t~~--~fCP~CGs~te~-----------------vy~CP--sCGaev~~des~a~~CP~CGtplv~~  722 (1337)
T PRK14714        668 RRCPSCGTETYE--NRCPDCGTHTEP-----------------VYVCP--DCGAEVPPDESGRVECPRCDVELTPY  722 (1337)
T ss_pred             EECCCCCCcccc--ccCcccCCcCCC-----------------ceeCc--cCCCccCCCccccccCCCCCCccccc
Confidence            689999998876  499999988421                 45899  999965443   67899999886543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	4e-05
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	3e-04
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	2e-04
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	3e-04
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	7e-04

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 38.8 bits (89), Expect = 4e-05
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 49  AGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACA--------NMMAYGTDGSVPPGWKS 100
            G W C    C   N A    C  C + K     A        ++ + G  G        
Sbjct: 6   VGSWECPV--CCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPE 63

Query: 101 GDWICNRMGCGVHNYASRMVCYKCKTPR 128
           G W C    C V N A    C  C++ +
Sbjct: 64  GSWDCE--VCLVQNKADSTKCIACESAK 89

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 36.4 bits (83), Expect = 3e-04
 Identities = 20/87 (22%), Positives = 26/87 (29%), Gaps = 15/87 (17%)

Query: 4  PGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVST-------------YLCNRTEVLAG 50
            G W C  C   N  +   C  C   K G    S+                ++ +   G
Sbjct: 5  SVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEG 64

Query: 51 DWYCTAMNCGAHNYASRPNCYRCGAAK 77
           W C    C   N A    C  C +AK
Sbjct: 65 SWDCEV--CLVQNKADSTKCIACESAK 89

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Length = 45

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 99  KSGDWICNRMGCGVHNYASRMVCYKCKTPR 128
             GDWIC    CG  N+A R  C +C   +
Sbjct: 11  SDGDWICPDKKCGNVNFARRTSCDRCGREK 40

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Length = 45

 Score = 35.3 bits (81), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 6  GDWMC--AACQHQNFKKREACQRCGYPKYGGP 35
          GDW+C    C + NF +R +C RCG  K  GP
Sbjct: 13 GDWICPDKKCGNVNFARRTSCDRCGREKTTGP 44

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Length = 45

 Score = 34.5 bits (79), Expect = 7e-04
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 49 AGDWYCTAMNCGAHNYASRPNCYRCGAAK 77
           GDW C    CG  N+A R +C RCG  K
Sbjct: 12 DGDWICPDKKCGNVNFARRTSCDRCGREK 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	99.76
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	99.69
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	99.39
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	99.29
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	99.28
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	99.24
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	99.2
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	99.19
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	99.17
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	99.16
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	98.76
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	98.71
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.5
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.47
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	98.44
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	98.32
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.32
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.24
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.21
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	98.13
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	97.96
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	97.85
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	97.72
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	97.61
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	97.6
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	97.36
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	97.0
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	96.85
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	96.68
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	96.61
2c6a_A	46	Ubiquitin-protein ligase E3 MDM2; zinc finger, hum	95.8
2c6a_A	46	Ubiquitin-protein ligase E3 MDM2; zinc finger, hum	94.71
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	94.63
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	94.31
2cr8_A	53	MDM4 protein; ZF-ranbp domain, P53-binding protein	91.72
1dx8_A	70	Rubredoxin; electron transport, zinc-substitution;	90.24
2cr8_A	53	MDM4 protein; ZF-ranbp domain, P53-binding protein	86.39
2ayj_A	56	50S ribosomal protein L40E; Zn-binding, beta-stran	82.2
2kn9_A	81	Rubredoxin; metalloprotein, ssgcid, structural gen	80.54
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	80.19
1yk4_A	52	Rubredoxin, RD; electron transport; 0.69A {Pyrococ	80.09
2v3b_B	55	Rubredoxin 2, rubredoxin; alkane degradation, iron	80.03

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=99.76  E-value=1.6e-19  Score=119.42  Aligned_cols=75  Identities=27%  Similarity=0.523  Sum_probs=26.6

Q ss_pred             CCCCCeEcCccCccccccccccccCCCCCCCCCCCcc-------------cccCCccccCCCcccCCCCCCCeecCCCcC
Q 033000            3 LPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVST-------------YLCNRTEVLAGDWYCTAMNCGAHNYASRPN   69 (129)
Q Consensus         3 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~-------------~~~~~~~~~~gdW~C~~~~C~~~N~~~~~~   69 (129)
                      .++|||+|+.|+++||+++.+|++|++|||.......             ..+..+..++|+|+|+  .|+++|++++..
T Consensus         4 ~~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~--~C~~~N~a~~~~   81 (92)
T 3gj8_B            4 GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCE--VCLVQNKADSTK   81 (92)
T ss_dssp             ------------------------------------------------------------CCEECT--TTCCEECSSCSB
T ss_pred             CCCcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCC--cCCcCChhhccc
Confidence            4689999999999999999999999999986421100             0013456688999999  999999999999


Q ss_pred             ccccCCCCCC
Q 033000           70 CYRCGAAKTD   79 (129)
Q Consensus        70 C~~C~~~~~~   79 (129)
                      |+.|+++||.
T Consensus        82 C~~C~~pkp~   91 (92)
T 3gj8_B           82 CIACESAKPG   91 (92)
T ss_dssp             CTTTCCBCC-
T ss_pred             ccccCCCCCC
Confidence            9999999984

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=99.69  E-value=6.9e-18  Score=111.50  Aligned_cols=79  Identities=24%  Similarity=0.470  Sum_probs=26.2

Q ss_pred             ccCCCcccCCCCCCCeecCCCcCccccCCCCCCcccccccccC---CCCC-----CCCCCccCceeecCCCCCceeccCC
Q 033000           47 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYG---TDGS-----VPPGWKSGDWICNRMGCGVHNYASR  118 (129)
Q Consensus        47 ~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~~~~~~~~~g---~~~~-----~~~~~~~gdW~C~~~~C~~~N~a~r  118 (129)
                      .++|||.|.  .|+++||+++..|..|+++||........+..   ...+     +....++|+|+|.  .|+++|++.+
T Consensus         4 ~~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~--~C~~~N~a~~   79 (92)
T 3gj8_B            4 GSVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCE--VCLVQNKADS   79 (92)
T ss_dssp             --------------------------------------------------------------CCEECT--TTCCEECSSC
T ss_pred             CCCcCCCCC--cCCCEeccccceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCC--cCCcCChhhc
Confidence            467999999  99999999999999999999864332110000   0000     1123478999999  7999999999


Q ss_pred             ccccCCCCCCC
Q 033000          119 MVCYKCKTPRE  129 (129)
Q Consensus       119 ~~C~~C~~pk~  129 (129)
                      .+|++|++|||
T Consensus        80 ~~C~~C~~pkp   90 (92)
T 3gj8_B           80 TKCIACESAKP   90 (92)
T ss_dssp             SBCTTTCCBCC
T ss_pred             ccccccCCCCC
Confidence            99999999986

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=99.39  E-value=1e-13  Score=92.45  Aligned_cols=76  Identities=24%  Similarity=0.530  Sum_probs=26.5

Q ss_pred             CCCCCCeEcCccCccccccccccccCCCCCCCCCCC------c-------------ccccCCccccCCCcccCCCCCCCe
Q 033000            2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDV------S-------------TYLCNRTEVLAGDWYCTAMNCGAH   62 (129)
Q Consensus         2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~------~-------------~~~~~~~~~~~gdW~C~~~~C~~~   62 (129)
                      +....+|.|..|.++|.+...+|..|++||+.....      .             ..+...+...+|.|.|.  .|.++
T Consensus         4 ~~~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~--~C~~~   81 (98)
T 3gj7_B            4 GSAGSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCD--TCLVQ   81 (98)
T ss_dssp             -------------------------------------------------------------------CCEECT--TTCCE
T ss_pred             cCCCCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCC--cCcCC
Confidence            345678999999999999999999999999853110      0             00113466788999999  99999


Q ss_pred             ecCCCcCccccCCCCCC
Q 033000           63 NYASRPNCYRCGAAKTD   79 (129)
Q Consensus        63 N~~~~~~C~~C~~~~~~   79 (129)
                      |.+....|..|+++||.
T Consensus        82 N~~~~~~C~aC~tpkPg   98 (98)
T 3gj7_B           82 NKPEAVKCVACETPKPG   98 (98)
T ss_dssp             ECTTCSBCTTTCCBCC-
T ss_pred             ChhhcceecccCCCCCC
Confidence            99999999999999973

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=99.29  E-value=1.1e-12  Score=70.56  Aligned_cols=30  Identities=43%  Similarity=0.990  Sum_probs=28.7

Q ss_pred             CCCCeEcCccCccccccccccccCCCCCCC
Q 033000            4 PGGDWMCAACQHQNFKKREACQRCGYPKYG   33 (129)
Q Consensus         4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~   33 (129)
                      |+|||+|+.|+++||++|..|++|++||+.
T Consensus         2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~   31 (32)
T 2lk0_A            2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD   31 (32)
T ss_dssp             CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred             CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence            689999999999999999999999999985

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=99.28  E-value=1.4e-12  Score=70.55  Aligned_cols=31  Identities=35%  Similarity=1.014  Sum_probs=29.2

Q ss_pred             CCCCCeEcCccCccccccccccccCCCCCCC
Q 033000            3 LPGGDWMCAACQHQNFKKREACQRCGYPKYG   33 (129)
Q Consensus         3 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~   33 (129)
                      .++|||+|+.|+++||++|..|++|++||+.
T Consensus         2 ~~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~   32 (33)
T 2k1p_A            2 SSANDWQCKTCSNVNWARRSECNMCNTPKYA   32 (33)
T ss_dssp             CSSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred             CCCCCcccCCCCCccccccccccccCCcCCC
Confidence            4789999999999999999999999999985

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=99.24  E-value=4.1e-12  Score=73.28  Aligned_cols=34  Identities=44%  Similarity=1.154  Sum_probs=31.0

Q ss_pred             CCCCCCeEcC--ccCccccccccccccCCCCCCCCC
Q 033000            2 SLPGGDWMCA--ACQHQNFKKREACQRCGYPKYGGP   35 (129)
Q Consensus         2 ~~~~gdW~C~--~C~~~Nf~~r~~C~~C~~prp~~~   35 (129)
                      ..++|||+|+  .|+++||++|..|++|++||+.++
T Consensus         9 ~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~~   44 (45)
T 1n0z_A            9 RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGP   44 (45)
T ss_dssp             SSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCCC
T ss_pred             CCCCCCcCCCCCCCCCEEccccccccccCCcCCCCC
Confidence            3578999999  899999999999999999999763

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=99.20  E-value=5.2e-12  Score=84.09  Aligned_cols=73  Identities=27%  Similarity=0.603  Sum_probs=26.2

Q ss_pred             CCCcccCCCCCCCeecCCCcCccccCCCCCCcccccc------------------cccCCCCCCCCCCccCceeecCCCC
Q 033000           49 AGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANM------------------MAYGTDGSVPPGWKSGDWICNRMGC  110 (129)
Q Consensus        49 ~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~gdW~C~~~~C  110 (129)
                      ...|.|.  .|.++|.++...|..|+++|+.......                  .|||    +....+.|.|.|.  .|
T Consensus         7 ~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfg----d~fk~~~g~W~C~--~C   78 (98)
T 3gj7_B            7 GSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFG----DKFKPAIGTWDCD--TC   78 (98)
T ss_dssp             ----------------------------------------------------------------------CCEECT--TT
T ss_pred             CCcccCC--ccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchh----hccCCCCCcccCC--cC
Confidence            4689999  9999999999999999999985421100                  0111    1223467999999  79


Q ss_pred             CceeccCCccccCCCCCCC
Q 033000          111 GVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus       111 ~~~N~a~r~~C~~C~~pk~  129 (129)
                      +++|.+...+|.+|++|||
T Consensus        79 ~~~N~~~~~~C~aC~tpkP   97 (98)
T 3gj7_B           79 LVQNKPEAVKCVACETPKP   97 (98)
T ss_dssp             CCEECTTCSBCTTTCCBCC
T ss_pred             cCCChhhcceecccCCCCC
Confidence            9999999999999999997

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=99.19  E-value=1.3e-11  Score=66.72  Aligned_cols=31  Identities=35%  Similarity=0.827  Sum_probs=28.9

Q ss_pred             ccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000           47 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD   79 (129)
Q Consensus        47 ~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~   79 (129)
                      +++|||+|+  .|+++||++|..|++|++||+.
T Consensus         2 ~~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~   32 (33)
T 2k1p_A            2 SSANDWQCK--TCSNVNWARRSECNMCNTPKYA   32 (33)
T ss_dssp             CSSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred             CCCCCcccC--CCCCccccccccccccCCcCCC
Confidence            578999999  9999999999999999999874

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=99.17  E-value=1e-11  Score=66.67  Aligned_cols=30  Identities=43%  Similarity=1.052  Sum_probs=28.3

Q ss_pred             cCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000           48 LAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD   79 (129)
Q Consensus        48 ~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~   79 (129)
                      +.|||+|+  .|+++||++|..|++|++|+++
T Consensus         2 k~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~   31 (32)
T 2lk0_A            2 KFEDWLCN--KCCLNNFRKRLKCFRCGADKFD   31 (32)
T ss_dssp             CCSEEECT--TTCCEEETTCCBCTTTCCBTTC
T ss_pred             CCCCCCcC--cCcCCcChhcceecCCCCcCCC
Confidence            57999999  9999999999999999999975

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=99.16  E-value=2.7e-11  Score=69.82  Aligned_cols=37  Identities=43%  Similarity=0.902  Sum_probs=33.2

Q ss_pred             CccccCCCcccCCCCCCCeecCCCcCccccCCCCCCc
Q 033000           44 RTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDY   80 (129)
Q Consensus        44 ~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~   80 (129)
                      ....++|||+|++..|+++||++|..|++|+++|+..
T Consensus         7 ~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~   43 (45)
T 1n0z_A            7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             cCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence            4567889999997789999999999999999999864

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=98.76  E-value=3.6e-09  Score=56.94  Aligned_cols=31  Identities=39%  Similarity=0.792  Sum_probs=26.7

Q ss_pred             CCCCCeEcCccCccccccccccccCCCCCCC
Q 033000            3 LPGGDWMCAACQHQNFKKREACQRCGYPKYG   33 (129)
Q Consensus         3 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~   33 (129)
                      ..+|+|+|+.|+++|.+...+|..|++|||+
T Consensus         3 ~~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg   33 (33)
T 3gj3_B            3 LGSGTWDCDTCLVQNKPEAVKCVACETPKPG   33 (33)
T ss_dssp             ---CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred             CCCCceeCCcccCCCccccCEEcccCCCCCC
Confidence            4679999999999999999999999999984

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=98.71  E-value=5.6e-09  Score=56.49  Aligned_cols=31  Identities=35%  Similarity=0.731  Sum_probs=25.8

Q ss_pred             CCCCCeEcCccCccccccccccccCCCCCCC
Q 033000            3 LPGGDWMCAACQHQNFKKREACQRCGYPKYG   33 (129)
Q Consensus         3 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~   33 (129)
                      ++.|+|+|+.|.++|.+...+|..|++|||+
T Consensus         3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg   33 (34)
T 3gj5_B            3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG   33 (34)
T ss_dssp             ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred             CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence            4689999999999999999999999999986

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=7.9e-08  Score=55.53  Aligned_cols=33  Identities=36%  Similarity=0.612  Sum_probs=30.5

Q ss_pred             CCCCCCeEcCccCccccccccccccCCCCCCCC
Q 033000            2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGG   34 (129)
Q Consensus         2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~   34 (129)
                      +.++|.|+|..|.+.|.+.+.+|+.|++||+..
T Consensus         6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs   38 (47)
T 2ebq_A            6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGT   38 (47)
T ss_dssp             CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred             CCCCCceECCeeeccCccCCceecCcCCCCCCC
Confidence            456799999999999999999999999999975

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=8.5e-08  Score=55.44  Aligned_cols=33  Identities=36%  Similarity=0.684  Sum_probs=30.4

Q ss_pred             CCCCCCeEcCccCccccccccccccCCCCCCCC
Q 033000            2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGG   34 (129)
Q Consensus         2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~   34 (129)
                      ..+.|.|+|..|.+.|.+.+.+|+.|++|||..
T Consensus         6 k~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~   38 (47)
T 2ebr_A            6 SGPEGSWDCELCLVQNKADSTKCLACESAKPGT   38 (47)
T ss_dssp             SSCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCC
T ss_pred             cCCCCeeECCeeecCCcCCcceecCcCCCCCCC
Confidence            346799999999999999999999999999975

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=98.44  E-value=1.2e-07  Score=50.93  Aligned_cols=32  Identities=25%  Similarity=0.644  Sum_probs=26.5

Q ss_pred             cccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000           46 EVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD   79 (129)
Q Consensus        46 ~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~   79 (129)
                      ++.+|.|.|+  .|.++|.+....|..|.+|||.
T Consensus         2 ~~~~g~W~C~--~C~~~N~~~~~kC~aC~tpkPg   33 (33)
T 3gj3_B            2 PLGSGTWDCD--TCLVQNKPEAVKCVACETPKPG   33 (33)
T ss_dssp             ----CCEECT--TTCCEECTTCSBCTTTCCBCC-
T ss_pred             CCCCCceeCC--cccCCCccccCEEcccCCCCCC
Confidence            3567999999  9999999999999999999973

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=98.32  E-value=3.1e-07  Score=49.57  Aligned_cols=32  Identities=31%  Similarity=0.700  Sum_probs=25.7

Q ss_pred             cccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000           46 EVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD   79 (129)
Q Consensus        46 ~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~   79 (129)
                      ++++|.|.|.  .|.+.|.++...|..|.++||.
T Consensus         2 ~~~~G~W~C~--~C~v~N~~~~~kC~aCet~Kpg   33 (34)
T 3gj5_B            2 PLGSGSWDCE--VCLVQNKADSTKCIACESAKPG   33 (34)
T ss_dssp             ----CCEECT--TTCCEECSSCSBCTTTCCBC--
T ss_pred             CCCCCceECC--eeEeECccccCEEcccCCcCCC
Confidence            3578999999  9999999999999999999975

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=7.3e-07  Score=51.47  Aligned_cols=36  Identities=28%  Similarity=0.574  Sum_probs=33.0

Q ss_pred             CccccCCCcccCCCCCCCeecCCCcCccccCCCCCCcc
Q 033000           44 RTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYA   81 (129)
Q Consensus        44 ~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~~   81 (129)
                      ++...+|.|.|.  .|.+.|.+.+..|..|++|++...
T Consensus         4 ~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~   39 (47)
T 2ebr_A            4 GSSGPEGSWDCE--LCLVQNKADSTKCLACESAKPGTK   39 (47)
T ss_dssp             SCSSCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred             cccCCCCeeECC--eeecCCcCCcceecCcCCCCCCCc
Confidence            567788999999  999999999999999999998764

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=6e-07  Score=53.82  Aligned_cols=32  Identities=31%  Similarity=0.668  Sum_probs=29.3

Q ss_pred             CCCCCCeEcCccCccccccccccccCCCCCCC
Q 033000            2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYG   33 (129)
Q Consensus         2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~   33 (129)
                      ..+.|.|+|..|.+.|.+...+|+.|++|||.
T Consensus        26 K~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG   57 (57)
T 2ebv_A           26 KRPIGSWECSVCCVSNNAEDNKCVSCMSEKPG   57 (57)
T ss_dssp             CCCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred             CCCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence            35679999999999999999999999999984

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=1.3e-06  Score=50.35  Aligned_cols=31  Identities=32%  Similarity=0.770  Sum_probs=28.3

Q ss_pred             CCccCceeecCCCCCceeccCCccccCCCCCCC
Q 033000           97 GWKSGDWICNRMGCGVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus        97 ~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~  129 (129)
                      ..++|.|.|.  +|.+.|.+...+|++|++||+
T Consensus         6 ~~~~g~W~C~--~C~v~N~a~~~kC~aCetpKp   36 (47)
T 2ebq_A            6 SGVIGTWDCD--TCLVQNKPEAIKCVACETPKP   36 (47)
T ss_dssp             CCCSSSEECS--SSCCEECSSCSBCSSSCCBCS
T ss_pred             CCCCCceECC--eeeccCccCCceecCcCCCCC
Confidence            4567999999  899999999999999999985

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=2e-06  Score=50.89  Aligned_cols=33  Identities=27%  Similarity=0.513  Sum_probs=29.8

Q ss_pred             CCCCCCeEcCccCccccccccccccCCCCCCCC
Q 033000            2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGG   34 (129)
Q Consensus         2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~   34 (129)
                      +..++.|.|+.|++.|......|.+|.+||+..
T Consensus         6 ~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s   38 (53)
T 2d9g_A            6 SGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS   38 (53)
T ss_dssp             SSCCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred             CCCCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence            345689999999999999999999999999964

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=9.1e-06  Score=47.97  Aligned_cols=30  Identities=27%  Similarity=0.643  Sum_probs=26.9

Q ss_pred             CccCceeecCCCCCceeccCCccccCCCCCCC
Q 033000           98 WKSGDWICNRMGCGVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus        98 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~  129 (129)
                      ...+.|.|+  .|+|+|.+....|.+|..||+
T Consensus         7 ~~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~   36 (53)
T 2d9g_A            7 GDEGYWDCS--VCTFRNSAEAFKCMMCDVRKG   36 (53)
T ss_dssp             SCCCCEECS--SSCCEECSSCSSCSSSCCCCC
T ss_pred             CCCCCcCCC--CCccCCCCCCCccCCCCCcCC
Confidence            346789999  799999999999999999985

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.85  E-value=3e-05  Score=46.34  Aligned_cols=35  Identities=26%  Similarity=0.619  Sum_probs=32.5

Q ss_pred             CCccccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000           43 NRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD   79 (129)
Q Consensus        43 ~~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~   79 (129)
                      ..+.+.+|.|.|.  .|.+.|.+....|..|++|+|.
T Consensus        23 ~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACetpKPG   57 (57)
T 2ebv_A           23 DKFKRPIGSWECS--VCCVSNNAEDNKCVSCMSEKPG   57 (57)
T ss_dssp             SCCCCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCCC
T ss_pred             HhcCCCCCeeeCC--eeEccCccCCceeeEcCCcCCC
Confidence            5688889999999  9999999999999999999873

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=97.72  E-value=2.2e-05  Score=41.98  Aligned_cols=29  Identities=31%  Similarity=0.832  Sum_probs=26.6

Q ss_pred             CCCCeEcCccCccccccccccccCCCCCC
Q 033000            4 PGGDWMCAACQHQNFKKREACQRCGYPKY   32 (129)
Q Consensus         4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp   32 (129)
                      ....|.|+.|+++|......|.+|.++|+
T Consensus         5 ~~~~W~C~~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            5 MGAQWNCTACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred             CCCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence            34689999999999999999999999986

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=97.61  E-value=4.1e-05  Score=40.94  Aligned_cols=28  Identities=29%  Similarity=0.841  Sum_probs=25.5

Q ss_pred             cCceeecCCCCCceeccCCccccCCCCCCC
Q 033000          100 SGDWICNRMGCGVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus       100 ~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~  129 (129)
                      ...|.|+  .|+|.|.+....|.+|..+|+
T Consensus         6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred             CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence            4579999  799999999999999999885

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=97.60  E-value=6.5e-05  Score=39.29  Aligned_cols=28  Identities=32%  Similarity=0.715  Sum_probs=25.3

Q ss_pred             cCceeecCCCCCceeccCCccccCCCCCCC
Q 033000          100 SGDWICNRMGCGVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus       100 ~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~  129 (129)
                      ...|.|+  .|+|+|......|.+|+.++.
T Consensus         4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r~   31 (31)
T 1nj3_A            4 SAMWACQ--HCTFMNQPGTGHCEMCSLPRT   31 (31)
T ss_dssp             SCCEECS--SSCCEECSSCSSCSSSCCCCC
T ss_pred             CccccCC--cccccCCCCCCccCCcCCCCC
Confidence            3579999  799999999999999999874

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=97.36  E-value=0.00015  Score=37.87  Aligned_cols=26  Identities=23%  Similarity=0.667  Sum_probs=24.5

Q ss_pred             CCcccCCCCCCCeecCCCcCccccCCCC
Q 033000           50 GDWYCTAMNCGAHNYASRPNCYRCGAAK   77 (129)
Q Consensus        50 gdW~C~~~~C~~~N~~~~~~C~~C~~~~   77 (129)
                      ..|.|+  .|+++|......|.+|+.++
T Consensus         5 ~~W~C~--~CTf~N~~~~~~Ce~C~~~r   30 (31)
T 1nj3_A            5 AMWACQ--HCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred             ccccCC--cccccCCCCCCccCCcCCCC
Confidence            589999  99999999999999999886

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=97.00  E-value=0.0005  Score=40.25  Aligned_cols=30  Identities=23%  Similarity=0.597  Sum_probs=27.7

Q ss_pred             CCCeEcCccCccccccccccccCCCCCCCC
Q 033000            5 GGDWMCAACQHQNFKKREACQRCGYPKYGG   34 (129)
Q Consensus         5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~   34 (129)
                      +..|.|+.|++.|......|-+|.++++..
T Consensus         8 ~~~W~Cp~CTf~N~p~~~~CemC~~prp~~   37 (52)
T 2crc_A            8 PVGWQCPGCTFINKPTRPGCEMCCRARPEA   37 (52)
T ss_dssp             SSSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred             CCCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence            458999999999999999999999999865

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=96.85  E-value=0.00065  Score=39.77  Aligned_cols=28  Identities=32%  Similarity=0.689  Sum_probs=25.2

Q ss_pred             cCceeecCCCCCceeccCCccccCCCCCCC
Q 033000          100 SGDWICNRMGCGVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus       100 ~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~  129 (129)
                      ...|.|+  .|+|+|......|.+|..+++
T Consensus         8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp   35 (52)
T 2crc_A            8 PVGWQCP--GCTFINKPTRPGCEMCCRARP   35 (52)
T ss_dssp             SSSBCCT--TTCCCBCTTCSSCSSSCCCCC
T ss_pred             CCCccCC--CcccccCCCCCeeCCCCCcCC
Confidence            3479999  799999999999999999875

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=96.68  E-value=0.0012  Score=40.15  Aligned_cols=30  Identities=23%  Similarity=0.579  Sum_probs=27.7

Q ss_pred             CCCeEcCccCccccccccccccCCCCCCCC
Q 033000            5 GGDWMCAACQHQNFKKREACQRCGYPKYGG   34 (129)
Q Consensus         5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~   34 (129)
                      ...|.|+.|++.|......|-+|.++++..
T Consensus         6 ~~~W~CP~CTf~N~p~~p~CEmC~~prp~~   35 (64)
T 3b08_B            6 PVGWQCPGCTFINKPTRPGCEMCCRARPET   35 (64)
T ss_dssp             CCSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred             CCCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence            458999999999999999999999999865

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=96.61  E-value=0.0012  Score=40.25  Aligned_cols=27  Identities=33%  Similarity=0.710  Sum_probs=24.8

Q ss_pred             CceeecCCCCCceeccCCccccCCCCCCC
Q 033000          101 GDWICNRMGCGVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus       101 gdW~C~~~~C~~~N~a~r~~C~~C~~pk~  129 (129)
                      ..|.|+  .|+|+|......|.+|+++++
T Consensus         7 ~~W~CP--~CTf~N~p~~p~CEmC~~prp   33 (64)
T 3b08_B            7 VGWQCP--GCTFINKPTRPGCEMCCRARP   33 (64)
T ss_dssp             CSEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred             CCCcCC--CccccCCCCCCccCcCCCCCC
Confidence            469999  799999999999999999875

>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A

Probab=95.80  E-value=0.0061  Score=34.55  Aligned_cols=28  Identities=25%  Similarity=0.608  Sum_probs=25.8

Q ss_pred             CCeEcCccCccccccccccccCCCCCCC
Q 033000            6 GDWMCAACQHQNFKKREACQRCGYPKYG   33 (129)
Q Consensus         6 gdW~C~~C~~~Nf~~r~~C~~C~~prp~   33 (129)
                      +.|.|..|...|++....|++|-+-|..
T Consensus        12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~   39 (46)
T 2c6a_A           12 DYWKCTSCNEMNPPLPSHCNRCWALREN   39 (46)
T ss_dssp             GCEECTTTCCEECSSCSSCTTTCCCCSS
T ss_pred             ceEecccccccCCCccchhhHHHhhccc
Confidence            6899999999999999999999998763

>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A

Probab=94.71  E-value=0.024  Score=32.07  Aligned_cols=27  Identities=33%  Similarity=0.748  Sum_probs=25.3

Q ss_pred             CCcccCCCCCCCeecCCCcCccccCCCCC
Q 033000           50 GDWYCTAMNCGAHNYASRPNCYRCGAAKT   78 (129)
Q Consensus        50 gdW~C~~~~C~~~N~~~~~~C~~C~~~~~   78 (129)
                      +.|.|.  .|..+|.+....|.+|-+-|.
T Consensus        12 D~WkC~--~C~~~N~Pl~r~C~rCw~LRk   38 (46)
T 2c6a_A           12 DYWKCT--SCNEMNPPLPSHCNRCWALRE   38 (46)
T ss_dssp             GCEECT--TTCCEECSSCSSCTTTCCCCS
T ss_pred             ceEecc--cccccCCCccchhhHHHhhcc
Confidence            689999  999999999999999998875

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=94.63  E-value=0.0058  Score=51.34  Aligned_cols=76  Identities=20%  Similarity=0.336  Sum_probs=0.0

Q ss_pred             CCCcccCCCCCCCeecCC---------CcCccccCCCCCCcccc--c--ccccCCCC-CCCCCCccCceeecCCCCCcee
Q 033000           49 AGDWYCTAMNCGAHNYAS---------RPNCYRCGAAKTDYACA--N--MMAYGTDG-SVPPGWKSGDWICNRMGCGVHN  114 (129)
Q Consensus        49 ~gdW~C~~~~C~~~N~~~---------~~~C~~C~~~~~~~~~~--~--~~~~g~~~-~~~~~~~~gdW~C~~~~C~~~N  114 (129)
                      ...|+|+  -|++.|-..         .-.|..||-+.+.....  .  +.-..... ...+.....+-.|+  .|+|.|
T Consensus       115 ~~tWvC~--ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP--~CTF~N  190 (566)
T 1w7p_D          115 VSTWVCP--ICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICP--ACTFAN  190 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceecc--ccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCC--cccccC
Confidence            4679999  999999863         34588898775432110  0  00000000 00001112457799  699999


Q ss_pred             ccCCccccCCCCCC
Q 033000          115 YASRMVCYKCKTPR  128 (129)
Q Consensus       115 ~a~r~~C~~C~~pk  128 (129)
                      .++...|++|+++.
T Consensus       191 HPsl~~CEiCg~~L  204 (566)
T 1w7p_D          191 HPQIGNCEICGHRL  204 (566)
T ss_dssp             --------------
T ss_pred             ChhhhcccccCCcC
Confidence            99999999999874

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=94.31  E-value=0.0076  Score=50.65  Aligned_cols=72  Identities=22%  Similarity=0.438  Sum_probs=0.0

Q ss_pred             CCeEcCccCcccccc---------ccccccCCCCCCCCCCCcc--cc--------cCCccccCCCcccCCCCCCCeecCC
Q 033000            6 GDWMCAACQHQNFKK---------REACQRCGYPKYGGPDVST--YL--------CNRTEVLAGDWYCTAMNCGAHNYAS   66 (129)
Q Consensus         6 gdW~C~~C~~~Nf~~---------r~~C~~C~~prp~~~~~~~--~~--------~~~~~~~~gdW~C~~~~C~~~N~~~   66 (129)
                      ..|+|+-|.+.|...         .-.|..|+.+.+.....+.  ..        .........+=.|+  .|+|+|-++
T Consensus       116 ~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP--~CTF~NHPs  193 (566)
T 1w7p_D          116 STWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICP--ACTFANHPQ  193 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCC--cccccCChh
Confidence            579999999999863         3469999998764321100  00        00111112356799  999999999


Q ss_pred             CcCccccCCCCCC
Q 033000           67 RPNCYRCGAAKTD   79 (129)
Q Consensus        67 ~~~C~~C~~~~~~   79 (129)
                      -..|..||++-+.
T Consensus       194 l~~CEiCg~~L~~  206 (566)
T 1w7p_D          194 IGNCEICGHRLPN  206 (566)
T ss_dssp             -------------
T ss_pred             hhcccccCCcCCC
Confidence            9999999998765

>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=91.72  E-value=0.18  Score=29.13  Aligned_cols=30  Identities=23%  Similarity=0.638  Sum_probs=26.4

Q ss_pred             CCCCeEcCccCccccccccccccCCCCCCC
Q 033000            4 PGGDWMCAACQHQNFKKREACQRCGYPKYG   33 (129)
Q Consensus         4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~   33 (129)
                      .+.-|.|..|...|..-...|.+|-+-|..
T Consensus         8 ~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~   37 (53)
T 2cr8_A            8 SEDEWQCTECKKFNSPSKRYCFRCWALRKD   37 (53)
T ss_dssp             CSCCEECSSSCCEECSSCCBCTTTCCBCCC
T ss_pred             CcceeecccccccCCCccchhHHHHHhhcc
Confidence            456799999999999999999999997753

>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A

Probab=90.24  E-value=0.55  Score=28.69  Aligned_cols=48  Identities=21%  Similarity=0.387  Sum_probs=27.1

Q ss_pred             CCCCCCCeEcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCC
Q 033000            1 MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGA   61 (129)
Q Consensus         1 ~~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~   61 (129)
                      |...-..|.|..|++.=....      +-|...- .++    ..+...+.||.|+  .|+.
T Consensus         1 m~~~m~~y~C~vCGyiYd~~~------Gdp~~gi-~pG----T~f~~lPddw~CP--~Cga   48 (70)
T 1dx8_A            1 MEIDEGKYECEACGYIYEPEK------GDKFAGI-PPG----TPFVDLSDSFMCP--ACRS   48 (70)
T ss_dssp             CBCCSSCEEETTTCCEECTTT------CCTTTTC-CSS----CCGGGSCTTCBCT--TTCC
T ss_pred             CCCCCceEEeCCCCEEEcCCC------CCcccCc-CCC----CchhhCCCCCcCC--CCCC
Confidence            666667899999987733211      1111110 011    2456677899999  5443

>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=86.39  E-value=0.93  Score=26.07  Aligned_cols=30  Identities=37%  Similarity=0.892  Sum_probs=26.3

Q ss_pred             cCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000           48 LAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD   79 (129)
Q Consensus        48 ~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~   79 (129)
                      .++-|.|.  .|.-.|.+....|.+|-+-|..
T Consensus         8 ~eD~WkC~--~C~k~N~Pl~ryC~rCwaLRk~   37 (53)
T 2cr8_A            8 SEDEWQCT--ECKKFNSPSKRYCFRCWALRKD   37 (53)
T ss_dssp             CSCCEECS--SSCCEECSSCCBCTTTCCBCCC
T ss_pred             Ccceeecc--cccccCCCccchhHHHHHhhcc
Confidence            45679999  9999999999999999888753

>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7

Probab=82.20  E-value=0.7  Score=27.08  Aligned_cols=25  Identities=24%  Similarity=0.511  Sum_probs=22.7

Q ss_pred             CCeEcCccCccccccccccccCCCC
Q 033000            6 GDWMCAACQHQNFKKREACQRCGYP   30 (129)
Q Consensus         6 gdW~C~~C~~~Nf~~r~~C~~C~~p   30 (129)
                      ..++|-.|+..|....+.|.+|+..
T Consensus        18 ~k~ICrkC~ARnp~~A~~CRKCg~~   42 (56)
T 2ayj_A           18 LKKVCRKCGALNPIRATKCRRCHST   42 (56)
T ss_dssp             CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred             chhhhccccCcCCcccccccCCCCC
Confidence            4689999999999999999999864

>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}

Probab=80.54  E-value=2  Score=26.99  Aligned_cols=43  Identities=28%  Similarity=0.675  Sum_probs=23.1

Q ss_pred             CCeEcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCC
Q 033000            6 GDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGA   61 (129)
Q Consensus         6 gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~   61 (129)
                      ..|.|..|++.-....      +-|...- .++    ..+...+.||.|+  .|+.
T Consensus        26 ~~y~C~vCGyvYD~~~------Gdp~~gI-~pG----T~fedlPddW~CP--vCga   68 (81)
T 2kn9_A           26 KLFRCIQCGFEYDEAL------GWPEDGI-AAG----TRWDDIPDDWSCP--DCGA   68 (81)
T ss_dssp             CEEEETTTCCEEETTT------CBTTTTB-CTT----CCTTTSCTTCCCT--TTCC
T ss_pred             ceEEeCCCCEEEcCCc------CCcccCc-CCC----CChhHCCCCCcCC--CCCC
Confidence            3699999987733211      1111100 011    2456667899999  5554

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=80.19  E-value=3.8  Score=23.36  Aligned_cols=16  Identities=50%  Similarity=1.086  Sum_probs=11.9

Q ss_pred             CccccCCCcccCCCCCCC
Q 033000           44 RTEVLAGDWYCTAMNCGA   61 (129)
Q Consensus        44 ~~~~~~gdW~C~~~~C~~   61 (129)
                      .+...+.||.|+  .|+.
T Consensus        29 ~f~~lP~dw~CP--~Cg~   44 (52)
T 1e8j_A           29 KFEDLPDDWACP--VCGA   44 (52)
T ss_dssp             CTTSSCTTCCCS--SSCC
T ss_pred             chHHCCCCCcCC--CCCC
Confidence            466668899999  6654

>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...

Probab=80.09  E-value=2.3  Score=24.31  Aligned_cols=16  Identities=50%  Similarity=1.093  Sum_probs=12.1

Q ss_pred             CccccCCCcccCCCCCCC
Q 033000           44 RTEVLAGDWYCTAMNCGA   61 (129)
Q Consensus        44 ~~~~~~gdW~C~~~~C~~   61 (129)
                      .+...+.||.|+  .|+.
T Consensus        28 ~f~~lP~dw~CP--~Cg~   43 (52)
T 1yk4_A           28 KFEDLPDDWVCP--LCGA   43 (52)
T ss_dssp             CGGGSCTTCBCT--TTCC
T ss_pred             CHhHCCCCCcCC--CCCC
Confidence            466678899999  6664

>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}

Probab=80.03  E-value=2.3  Score=24.64  Aligned_cols=16  Identities=44%  Similarity=1.151  Sum_probs=11.9

Q ss_pred             CccccCCCcccCCCCCCC
Q 033000           44 RTEVLAGDWYCTAMNCGA   61 (129)
Q Consensus        44 ~~~~~~gdW~C~~~~C~~   61 (129)
                      .+...+.||.|+  .|+.
T Consensus        29 ~f~~lP~dw~CP--~Cga   44 (55)
T 2v3b_B           29 RWEDIPADWVCP--DCGV   44 (55)
T ss_dssp             CGGGSCTTCCCT--TTCC
T ss_pred             ChhHCCCCCcCC--CCCC
Confidence            466678899999  6654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1n0za_	45	g.41.11.1 (A:) Znf265, first zinc-finger domain {H	6e-08
d1n0za_	45	g.41.11.1 (A:) Znf265, first zinc-finger domain {H	3e-07
d1n0za_	45	g.41.11.1 (A:) Znf265, first zinc-finger domain {H	3e-04

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 6e-08
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 98  WKSGDWICNRMGCGVHNYASRMVCYKCKTPRE 129
              GDWIC    CG  N+A R  C +C   + 
Sbjct: 10  VSDGDWICPDKKCGNVNFARRTSCDRCGREKT 41

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 3e-07
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 49 AGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 79
           GDW C    CG  N+A R +C RCG  KT 
Sbjct: 12 DGDWICPDKKCGNVNFARRTSCDRCGREKTT 42

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 6  GDWMC--AACQHQNFKKREACQRCGYPKYGGP 35
          GDW+C    C + NF +R +C RCG  K  GP
Sbjct: 13 GDWICPDKKCGNVNFARRTSCDRCGREKTTGP 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1n0za_	45	Znf265, first zinc-finger domain {Human (Homo sapi	99.28
d1n0za_	45	Znf265, first zinc-finger domain {Human (Homo sapi	99.25
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	98.5
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	98.13
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.0
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.71
d1dx8a_	70	Rubredoxin {Guillardia theta [TaxId: 55529]}	90.85
d2c6aa1	46	MDM2 {Human (Homo sapiens) [TaxId: 9606]}	89.83
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	88.85
d2cr8a1	41	MDM4 {Human (Homo sapiens) [TaxId: 9606]}	87.35
d2c6aa1	46	MDM2 {Human (Homo sapiens) [TaxId: 9606]}	85.01
d2cr8a1	41	MDM4 {Human (Homo sapiens) [TaxId: 9606]}	84.9
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	84.55
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	81.82
d2ayja1	56	Ribosomal protein L40e {Sulfolobus solfataricus [T	80.82

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=73.46  Aligned_cols=38  Identities=42%  Similarity=0.885  Sum_probs=33.6

Q ss_pred             CCccccCCCcccCCCCCCCeecCCCcCccccCCCCCCc
Q 033000           43 NRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDY   80 (129)
Q Consensus        43 ~~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~   80 (129)
                      ..+.+++|||+|++..|+++||++|..|++|+++|++.
T Consensus         6 ~n~~~~~GDW~C~~~~C~~~NFa~R~~C~rC~~~r~~g   43 (45)
T d1n0za_           6 KNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SSCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             CCCCCCCCCccCCCCCCCCeeccccCcccCCCCcCCCC
Confidence            35788899999985579999999999999999999864

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.3e-12  Score=73.67  Aligned_cols=33  Identities=45%  Similarity=1.190  Sum_probs=30.0

Q ss_pred             CCCCCeEcC--ccCccccccccccccCCCCCCCCC
Q 033000            3 LPGGDWMCA--ACQHQNFKKREACQRCGYPKYGGP   35 (129)
Q Consensus         3 ~~~gdW~C~--~C~~~Nf~~r~~C~~C~~prp~~~   35 (129)
                      .++|||+|+  .|+++||++|..|++|++||+.++
T Consensus        10 ~~~GDW~C~~~~C~~~NFa~R~~C~rC~~~r~~gp   44 (45)
T d1n0za_          10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGP   44 (45)
T ss_dssp             SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCCC
T ss_pred             CCCCCccCCCCCCCCeeccccCcccCCCCcCCCCc
Confidence            457999997  799999999999999999999864

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.8e-08  Score=50.51  Aligned_cols=28  Identities=36%  Similarity=0.702  Sum_probs=26.9

Q ss_pred             CCCeEcCccCccccccccccccCCCCCC
Q 033000            5 GGDWMCAACQHQNFKKREACQRCGYPKY   32 (129)
Q Consensus         5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp   32 (129)
                      -|.|+|..|.++|.+...+|..|++|||
T Consensus         2 ~GsWeC~~C~v~N~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           2 IGTWDCDTCLVQNKPEAIKCVACETPKP   29 (29)
T ss_dssp             CCCEECSSSCCEECTTCSBCSSSCCBCC
T ss_pred             cceeECCceEeEChhhCCEEeecCCCCC
Confidence            4899999999999999999999999997

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.2e-07  Score=45.12  Aligned_cols=28  Identities=36%  Similarity=0.915  Sum_probs=26.4

Q ss_pred             cCceeecCCCCCceeccCCccccCCCCCCC
Q 033000          100 SGDWICNRMGCGVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus       100 ~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~  129 (129)
                      -|.|.|.  +|...|-+...+|..|++|||
T Consensus         2 ~GsWeC~--~C~v~N~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           2 IGTWDCD--TCLVQNKPEAIKCVACETPKP   29 (29)
T ss_dssp             CCCEECS--SSCCEECTTCSBCSSSCCBCC
T ss_pred             cceeECC--ceEeEChhhCCEEeecCCCCC
Confidence            3789999  799999999999999999997

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.00  E-value=0.00021  Score=35.46  Aligned_cols=28  Identities=32%  Similarity=0.715  Sum_probs=25.2

Q ss_pred             cCceeecCCCCCceeccCCccccCCCCCCC
Q 033000          100 SGDWICNRMGCGVHNYASRMVCYKCKTPRE  129 (129)
Q Consensus       100 ~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~  129 (129)
                      ..-|.|.  .|+|+|-+.-..|.||.-||.
T Consensus         4 samWsC~--HCTf~N~pgtd~CeMC~LPrt   31 (31)
T d1q5wa_           4 SAMWACQ--HCTFMNQPGTGHCEMCSLPRT   31 (31)
T ss_dssp             CCCEECS--SSCCEECTTCSBCTTTCCBCC
T ss_pred             cceeEee--eeeeecCCCCCcchhhccCCC
Confidence            4569999  899999999999999999874

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.71  E-value=0.00042  Score=34.35  Aligned_cols=27  Identities=26%  Similarity=0.786  Sum_probs=25.0

Q ss_pred             CCCeEcCccCccccccccccccCCCCC
Q 033000            5 GGDWMCAACQHQNFKKREACQRCGYPK   31 (129)
Q Consensus         5 ~gdW~C~~C~~~Nf~~r~~C~~C~~pr   31 (129)
                      ...|.|..|++.|-+.-..|-+|.-||
T Consensus         4 samWsC~HCTf~N~pgtd~CeMC~LPr   30 (31)
T d1q5wa_           4 SAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCCEECSSSCCEECTTCSBCTTTCCBC
T ss_pred             cceeEeeeeeeecCCCCCcchhhccCC
Confidence            357999999999999999999999887

>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Guillardia theta [TaxId: 55529]

Probab=90.85  E-value=0.23  Score=29.02  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=26.4

Q ss_pred             CCCCCCCeEcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccC
Q 033000            1 MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCT   55 (129)
Q Consensus         1 ~~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~   55 (129)
                      |....+.|.|..|++.=-...      +-|...- .+    .-.+.-.+.||.|+
T Consensus         1 m~~~~~ky~C~~CgyiYDp~~------GD~~~gI-~p----GT~F~dLP~dW~CP   44 (70)
T d1dx8a_           1 MEIDEGKYECEACGYIYEPEK------GDKFAGI-PP----GTPFVDLSDSFMCP   44 (70)
T ss_dssp             CBCCSSCEEETTTCCEECTTT------CCTTTTC-CS----SCCGGGSCTTCBCT
T ss_pred             CcccCCeEEcCCCCeEECccc------CCcccCC-CC----CCChHHCCCCCCCc
Confidence            667789999999986533211      1111110 01    12467778999999

>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: MDM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.1  Score=27.99  Aligned_cols=27  Identities=26%  Similarity=0.625  Sum_probs=24.7

Q ss_pred             CCeEcCccCccccccccccccCCCCCC
Q 033000            6 GDWMCAACQHQNFKKREACQRCGYPKY   32 (129)
Q Consensus         6 gdW~C~~C~~~Nf~~r~~C~~C~~prp   32 (129)
                      .-|.|..|...|......|.+|=+-|.
T Consensus        12 D~WkC~~C~~~N~Pl~ryC~rCWaLR~   38 (46)
T d2c6aa1          12 DYWKCTSCNEMNPPLPSHCNRCWALRE   38 (46)
T ss_dssp             GCEECTTTCCEECSSCSSCTTTCCCCS
T ss_pred             hhccCccccccCCcchhHhHHHHHHhh
Confidence            469999999999999999999998775

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.85  E-value=0.12  Score=26.54  Aligned_cols=26  Identities=31%  Similarity=0.657  Sum_probs=21.6

Q ss_pred             CcccCCCCCCCeecCCC-cCccccCCCCC
Q 033000           51 DWYCTAMNCGAHNYASR-PNCYRCGAAKT   78 (129)
Q Consensus        51 dW~C~~~~C~~~N~~~~-~~C~~C~~~~~   78 (129)
                      -|.|.  .||++-.... ..|+.|++++.
T Consensus         5 ~~~C~--vCG~i~~g~~P~~CPvCg~~~~   31 (37)
T d1nnqa2           5 VYICP--ICGYTAVDEAPEYCPVCGAPKE   31 (37)
T ss_dssp             EEECT--TTCCEEESCCCSBCTTTCCBGG
T ss_pred             EEECC--CCCCEecCCCCCcCCCCCCcHH
Confidence            59999  9999977654 67999999864

>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: MDM4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.35  E-value=0.24  Score=25.82  Aligned_cols=28  Identities=25%  Similarity=0.678  Sum_probs=25.3

Q ss_pred             CCCeEcCccCccccccccccccCCCCCC
Q 033000            5 GGDWMCAACQHQNFKKREACQRCGYPKY   32 (129)
Q Consensus         5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp   32 (129)
                      +.-|.|..|...|..-...|.+|=+-|.
T Consensus         2 eD~WkC~~C~~~N~Pl~ryC~rCWalRk   29 (41)
T d2cr8a1           2 EDEWQCTECKKFNSPSKRYCFRCWALRK   29 (41)
T ss_dssp             SCCEECSSSCCEECSSCCBCTTTCCBCC
T ss_pred             CcceecCcccccCCcchhHHHHHHHHHH
Confidence            4679999999999999999999998764

>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: MDM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.33  Score=25.90  Aligned_cols=28  Identities=36%  Similarity=0.750  Sum_probs=25.1

Q ss_pred             CCCcccCCCCCCCeecCCCcCccccCCCCC
Q 033000           49 AGDWYCTAMNCGAHNYASRPNCYRCGAAKT   78 (129)
Q Consensus        49 ~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~   78 (129)
                      +.-|.|.  .|.-.|.+....|.+|=+-|.
T Consensus        11 ~D~WkC~--~C~~~N~Pl~ryC~rCWaLR~   38 (46)
T d2c6aa1          11 ADYWKCT--SCNEMNPPLPSHCNRCWALRE   38 (46)
T ss_dssp             GGCEECT--TTCCEECSSCSSCTTTCCCCS
T ss_pred             hhhccCc--cccccCCcchhHhHHHHHHhh
Confidence            4579999  999999999999999988764

>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: MDM4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.90  E-value=0.41  Score=24.87  Aligned_cols=28  Identities=36%  Similarity=0.924  Sum_probs=25.1

Q ss_pred             CCCcccCCCCCCCeecCCCcCccccCCCCC
Q 033000           49 AGDWYCTAMNCGAHNYASRPNCYRCGAAKT   78 (129)
Q Consensus        49 ~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~   78 (129)
                      ++-|.|.  .|.-.|.+....|.+|=+-|.
T Consensus         2 eD~WkC~--~C~~~N~Pl~ryC~rCWalRk   29 (41)
T d2cr8a1           2 EDEWQCT--ECKKFNSPSKRYCFRCWALRK   29 (41)
T ss_dssp             SCCEECS--SSCCEECSSCCBCTTTCCBCC
T ss_pred             CcceecC--cccccCCcchhHHHHHHHHHH
Confidence            4579999  999999999999999988764

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=84.55  E-value=0.31  Score=24.77  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=21.4

Q ss_pred             CcccCCCCCCCeecC-CCcCccccCCCCC
Q 033000           51 DWYCTAMNCGAHNYA-SRPNCYRCGAAKT   78 (129)
Q Consensus        51 dW~C~~~~C~~~N~~-~~~~C~~C~~~~~   78 (129)
                      -|+|.  .|+++-.. .-..|+.|++++.
T Consensus         5 ~~vC~--vCGyi~~g~~Pe~CPvCg~~~~   31 (36)
T d1yuza2           5 FHLCP--ICGYIHKGEDFEKCPICFRPKD   31 (36)
T ss_dssp             EEECS--SSCCEEESSCCSBCTTTCCBGG
T ss_pred             EEECC--CCCCEeeCCCCCcCCCCCCcHH
Confidence            59999  99999765 4567999998864

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=81.82  E-value=0.85  Score=24.15  Aligned_cols=35  Identities=23%  Similarity=0.650  Sum_probs=21.6

Q ss_pred             CeEcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCC
Q 033000            7 DWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGA   61 (129)
Q Consensus         7 dW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~   61 (129)
                      .|.|..|++.=....-          .+        -.++-.+.||.|+  .|+.
T Consensus         3 ~y~C~~CgyiYd~~~G----------dg--------t~Fe~LP~dw~CP--~C~a   37 (45)
T d6rxna_           3 KYVCNVCGYEYDPAEH----------DN--------VPFDQLPDDWCCP--VCGV   37 (45)
T ss_dssp             CEEETTTCCEECGGGG----------TT--------CCGGGSCTTCBCT--TTCC
T ss_pred             CeEeCCCCeEECcccC----------CC--------CCHHHCCCCCCCc--CCCC
Confidence            5999999865433221          01        1356667899999  6653

>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L40e
domain: Ribosomal protein L40e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=80.82  E-value=0.46  Score=26.37  Aligned_cols=26  Identities=23%  Similarity=0.502  Sum_probs=23.1

Q ss_pred             CCeEcCccCccccccccccccCCCCC
Q 033000            6 GDWMCAACQHQNFKKREACQRCGYPK   31 (129)
Q Consensus         6 gdW~C~~C~~~Nf~~r~~C~~C~~pr   31 (129)
                      ...+|-.|+..|..+.+.|.+|+-..
T Consensus        18 ~k~ICrkC~AR~p~rAt~CRKCg~~n   43 (56)
T d2ayja1          18 LKKVCRKCGALNPIRATKCRRCHSTN   43 (56)
T ss_dssp             CCEEETTTCCEECTTCSSCTTTCCCC
T ss_pred             hhHHHhhccccCCccccccccCCCCC
Confidence            46899999999999999999998753