Citrus Sinensis ID: 033060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHTHSNEAETP
Secondary Structure (PSIPRED)
ccccEEEEEccccEEEccccccccccccccccccccccccEEEEEcccEEEEEccccEEEEEEccEEEEEcccccccccEEEEEcEEccccEEEEEcEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEEccccccHcccHHHHHHHHcccccccEEEEcEEEEEEcccHHHHEHHccccEEEEEEEHccccEEEEEEHHHcHHccccccccEEEEEEEEEcccccEEEEcccccccccccc
Coil and Loop (DISEMBL)
MGRIFLVelkgrsyykcrfcnSHLALADSVLSWsfncrrgraylFSDVVNIMLGPQEERLMLSGMHTVEDIFccccgqivgWKYVAAHdknqkykegkfVLERWRIVEEVTEELSLEththsneaetp
Flexible Loop (DISEMBL)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDknqkykegkfvleRWRIVEEVteelsleththsneaetp
Low Complexity Region (SEG)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIveevteelsleththsNEAETP
Disordered region (IsUnstruct)
***IFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVT*****************
Disordered Region (DISOPRED)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTE****************
Disordered Region (DISEMBL)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEE***************
Disordered Region (DISPRO)
*GRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLE***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHTHSNEAETP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q9FN32	129	Protein yippee-like At5g5	yes	no	0.976	0.968	0.671	3e-45
P59234	129	Protein yippee-like OS=So	N/A	no	0.976	0.968	0.523	3e-34
Q9SR97	128	Protein yippee-like At3g0	no	no	0.828	0.828	0.532	2e-32
Q9C777	129	Protein yippee-like At3g1	no	no	0.820	0.813	0.594	1e-31
Q9LY56	121	Protein yippee-like At3g5	no	no	0.820	0.867	0.537	2e-30
Q8S5M8	119	Putative yippee-like prot	no	no	0.742	0.798	0.547	3e-26
Q9T096	106	Protein yippee-like At4g2	no	no	0.812	0.981	0.461	8e-24
Q5XID5	127	Protein yippee-like 4 OS=	yes	no	0.742	0.748	0.494	2e-22
Q65Z93	127	Protein yippee-like 4 OS=	yes	no	0.742	0.748	0.494	2e-22
Q96NS1	127	Protein yippee-like 4 OS=	yes	no	0.742	0.748	0.494	2e-22

>sp|Q9FN32|YIPL7_ARATH Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1

 Score =  179 bits (455), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 106/128 (82%), Gaps = 3/128 (2%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct: 1   MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEV--TEELSLET 118
           MLSGMHTV DIFCCCCGQ VGWKY +AH+K QKYKEGKFVLER RIV+E+  + E+ ++T
Sbjct: 60  MLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEIDLSTEVYIDT 119

Query: 119 HTHSNEAE 126
           H  +++ E
Sbjct: 120 HGSTSDTE 127

Arabidopsis thaliana (taxid: 3702)

>sp|P59234|YIPL_SOLTU Protein yippee-like OS=Solanum tuberosum PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 94/128 (73%), Gaps = 3/128 (2%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F++ L+G+  Y C+ C +HLAL+++++S SF+C+ G+AYLFS VVN+  G  E R+
Sbjct: 1   MGRLFVLTLEGK-IYSCKHCGTHLALSENIVSKSFHCKHGKAYLFSKVVNVTSGEIENRM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEE--LSLET 118
           M++GMHTV DIFC CCG IVGWKY  AH+K+QKYKEGK VLER++I          S +T
Sbjct: 60  MMTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERFKITGPDGSHYWASHDT 119

Query: 119 HTHSNEAE 126
           H   ++A+
Sbjct: 120 HVAGSDAD 127

Solanum tuberosum (taxid: 4113)

>sp|Q9SR97|YIPL1_ARATH Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 86/107 (80%), Gaps = 1/107 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+++L+G  Y  C++C +H A+ + ++S SF+C+ GRAYLF +VVN+ +G +E R+
Sbjct: 1   MGRLFVIDLEGLVY-SCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRV 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIV 107
           M++G HTV DIFC  CG +VGWKY  A+DK+QKYKEGKF+LER++++
Sbjct: 60  MITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVL 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C777|YIPL3_ARATH Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1

 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 82/106 (77%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+FLV L+G+SY  C+ C ++LAL D V+S SF  R G+AYLFS VVN+  G +E+R+
Sbjct: 1   MGRLFLVNLEGKSY-SCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 106
           M++GMHTV DI+C  CG  VGWKY  A +KNQKYKEGK VLER+++
Sbjct: 60  MMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY56|YIPL4_ARATH Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 82/106 (77%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+V+L+G + Y C+ C +HL+    ++S SF C+ GRAYLF++VVN+ +G +E+R+
Sbjct: 1   MGRVFMVDLEG-NIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 106
           M++G+H V DIFC  CG  VGWKY  AH+K+QKYKEGK VLE ++I
Sbjct: 60  MITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKI 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S5M8|YIPL_ORYSJ Putative yippee-like protein Os10g0369500 OS=Oryza sativa subsp. japonica GN=Os10g0369500 PE=3 SV=1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 72/95 (75%)

Query: 16  KCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCC 75
           KCR C    A AD++LS  F  R GRAYLF  VVNI LGP E+R +++G+HTV+DI+C C
Sbjct: 24  KCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYCSC 83

Query: 76  CGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEV 110
           C QI+GW+Y  A+++++KYKEGKF+LE+ R+ +E 
Sbjct: 84  CQQILGWRYEKAYEESEKYKEGKFILEKARMWKEA 118

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 73/104 (70%)

Query: 6   LVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65
           + +  G   Y C  C +H+ L D ++S +F  R GRA+LFS  +NI++GP+E+R +L+G+
Sbjct: 1   MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60

Query: 66  HTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEE 109
           HTV DI C  C + +GWKY  A++ +QKYKEGKF+ E+ +IV+E
Sbjct: 61  HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKE 104

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XID5|YPEL4_RAT Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 66/95 (69%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEE 109
            C   +GWKY  A + +QKYKEGK+++E   +V++
Sbjct: 89  SCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKD 123

Rattus norvegicus (taxid: 10116)

>sp|Q65Z93|YPEL4_MOUSE Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 66/95 (69%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEE 109
            C   +GWKY  A + +QKYKEGK+++E   +V++
Sbjct: 89  SCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKD 123

Mus musculus (taxid: 10090)

>sp|Q96NS1|YPEL4_HUMAN Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 66/95 (69%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEE 109
            C   +GWKY  A + +QKYKEGK+++E   +V++
Sbjct: 89  SCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKD 123

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
449457755	127	PREDICTED: protein yippee-like At5g53940	0.992	1.0	0.726	4e-49
255536753	127	fad NAD binding oxidoreductases, putativ	0.984	0.992	0.685	9e-47
388498478	127	unknown [Medicago truncatula]	0.992	1.0	0.656	1e-44
356549697	129	PREDICTED: protein yippee-like At5g53940	0.992	0.984	0.638	6e-44
359493828	127	PREDICTED: protein yippee-like At5g53940	0.992	1.0	0.632	6e-44
15238881	129	yippee-like zinc-binding protein [Arabid	0.976	0.968	0.671	2e-43
297796245	129	yippee family protein [Arabidopsis lyrat	0.976	0.968	0.664	2e-42
356548694	135	PREDICTED: uncharacterized protein LOC10	0.945	0.896	0.655	5e-42
351726992	129	uncharacterized protein LOC100306635 [Gl	0.992	0.984	0.623	1e-41
351728072	135	uncharacterized protein LOC100499933 [Gl	0.945	0.896	0.647	2e-41

>gi|449457755|ref|XP_004146613.1| PREDICTED: protein yippee-like At5g53940-like [Cucumis sativus] gi|449524786|ref|XP_004169402.1| PREDICTED: protein yippee-like At5g53940-like [Cucumis sativus]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/128 (72%), Positives = 110/128 (85%), Gaps = 1/128 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+FLVEL+GRSY +CRFCN+++ALAD VLS +FNC +GRAYLFS+VVNI  GP+EERL
Sbjct: 1   MGRVFLVELEGRSY-RCRFCNNNVALADDVLSRTFNCSQGRAYLFSNVVNITSGPKEERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHT 120
           MLSGMH VEDIFCC CGQI+GWKYV  HDK QKYKEGKFVLERWRIVEE+ E+L+ + H 
Sbjct: 60  MLSGMHIVEDIFCCICGQILGWKYVTTHDKYQKYKEGKFVLERWRIVEEMMEDLNGDAHP 119

Query: 121 HSNEAETP 128
            S++ E P
Sbjct: 120 GSSDMENP 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536753|ref|XP_002509443.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223549342|gb|EEF50830.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 108/127 (85%), Gaps = 1/127 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+V+++GR Y  CRFC++ LALAD VLS +FNCR+GRAYLFS+VVNI +GP EER+
Sbjct: 1   MGRLFVVDVEGRCY-SCRFCDTPLALADDVLSRTFNCRKGRAYLFSNVVNITVGPPEERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHT 120
           MLSGMHTVEDI+CC CGQ++GWKYVAAHDK+QKYKEGKFVLERWRI +E + E +L+   
Sbjct: 60  MLSGMHTVEDIYCCSCGQLLGWKYVAAHDKSQKYKEGKFVLERWRIDDEASGEFNLDGRP 119

Query: 121 HSNEAET 127
            SN+ E 
Sbjct: 120 SSNDGEN 126

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498478|gb|AFK37305.1| unknown [Medicago truncatula]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 106/128 (82%), Gaps = 1/128 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F ++L GR+Y +C FC +  ALAD VLS SF+C RGRAYLFS VVN+ LG Q ERL
Sbjct: 1   MGRVFYLDLDGRAY-RCTFCRTPFALADHVLSRSFSCSRGRAYLFSKVVNVTLGTQVERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHT 120
           M+SG+HTVEDIFCCCCGQIVGWKYV AH+K++ YKEGKFVLERWRIV++V +EL+L+ + 
Sbjct: 60  MMSGLHTVEDIFCCCCGQIVGWKYVVAHEKSETYKEGKFVLERWRIVDDVEDELNLDANA 119

Query: 121 HSNEAETP 128
            S+++E  
Sbjct: 120 SSSDSENT 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549697|ref|XP_003543228.1| PREDICTED: protein yippee-like At5g53940-like [Glycine max]

 Score =  182 bits (461), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/130 (63%), Positives = 109/130 (83%), Gaps = 3/130 (2%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF+VEL+GRSY +C+FC +HLALAD ++S +F+CRRG+AYLF++ VN  +G  EER+
Sbjct: 1   MGRIFVVELEGRSY-RCKFCRTHLALADDLISRAFHCRRGKAYLFNNAVNFTIGTPEERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEV--TEELSLET 118
           MLSG+HTV DIFCCCCGQI+GWKY +AH+K+QKYKEGKFVLER RIV+EV  + E  +++
Sbjct: 60  MLSGLHTVADIFCCCCGQIIGWKYESAHEKSQKYKEGKFVLERGRIVDEVDFSTEFYIDS 119

Query: 119 HTHSNEAETP 128
           H   ++AE P
Sbjct: 120 HASMSDAEEP 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493828|ref|XP_002282618.2| PREDICTED: protein yippee-like At5g53940-like [Vitis vinifera] gi|302142969|emb|CBI20264.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 81/128 (63%), Positives = 105/128 (82%), Gaps = 1/128 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+VEL+ R+Y +C+FC +HLALAD ++S +F+CRRG+AYLF++ VNI +G QEER+
Sbjct: 1   MGRVFVVELEARAY-ECKFCKTHLALADDLVSRAFHCRRGKAYLFNNAVNITVGAQEERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHT 120
           M+SGMHTV DIFCCCCGQIVGWKY  AHDK QKYKEGKFVLER RI++ V  E  ++T  
Sbjct: 60  MISGMHTVADIFCCCCGQIVGWKYEMAHDKTQKYKEGKFVLERGRIIDGVDSEFYIDTRA 119

Query: 121 HSNEAETP 128
           + ++AE  
Sbjct: 120 NMSDAEDA 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238881|ref|NP_200205.1| yippee-like zinc-binding protein [Arabidopsis thaliana] gi|27923898|sp|Q9FN32.1|YIPL7_ARATH RecName: Full=Protein yippee-like At5g53940 gi|10177256|dbj|BAB10724.1| zinc-binding protein-like [Arabidopsis thaliana] gi|21554253|gb|AAM63328.1| zinc-binding protein-like [Arabidopsis thaliana] gi|51971218|dbj|BAD44301.1| zinc-binding protein-like [Arabidopsis thaliana] gi|88011182|gb|ABD38914.1| At5g53940 [Arabidopsis thaliana] gi|332009048|gb|AED96431.1| yippee-like zinc-binding protein [Arabidopsis thaliana]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 106/128 (82%), Gaps = 3/128 (2%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct: 1   MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEV--TEELSLET 118
           MLSGMHTV DIFCCCCGQ VGWKY +AH+K QKYKEGKFVLER RIV+E+  + E+ ++T
Sbjct: 60  MLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEIDLSTEVYIDT 119

Query: 119 HTHSNEAE 126
           H  +++ E
Sbjct: 120 HGSTSDTE 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796245|ref|XP_002866007.1| yippee family protein [Arabidopsis lyrata subsp. lyrata] gi|297311842|gb|EFH42266.1| yippee family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 105/128 (82%), Gaps = 3/128 (2%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct: 1   MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEV--TEELSLET 118
           MLSGMHTV DIFCC CGQ VGWKY +AH+K QKYKEGKFVLER RIV+E+  + E+ ++T
Sbjct: 60  MLSGMHTVADIFCCSCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEIDLSTEVYIDT 119

Query: 119 HTHSNEAE 126
           H  +++ E
Sbjct: 120 HGSTSDTE 127

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548694|ref|XP_003542735.1| PREDICTED: uncharacterized protein LOC100305833 [Glycine max]

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 100/122 (81%), Gaps = 1/122 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F++EL GRSY  C+FCN+ LALAD +LS +FNC +GRAYLFS VVN++LGPQ ER+
Sbjct: 1   MGRVFVLELDGRSY-GCKFCNTPLALADHILSRNFNCSQGRAYLFSKVVNVILGPQVERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHT 120
           M+SG+HTVEDIFCC CG ++GWKYV AH+KN+ YKEGKFVLERW IV+   EEL+ +   
Sbjct: 60  MISGLHTVEDIFCCNCGNLLGWKYVLAHEKNEIYKEGKFVLERWTIVDNEEEELNSDAQA 119

Query: 121 HS 122
            S
Sbjct: 120 GS 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726992|ref|NP_001237913.1| uncharacterized protein LOC100306635 [Glycine max] gi|255629139|gb|ACU14914.1| unknown [Glycine max]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 107/130 (82%), Gaps = 3/130 (2%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF VEL+GRSY +C+FC +HLALA+ ++S +F+C RG+AYLF++VVN  +G  EER+
Sbjct: 1   MGRIFAVELEGRSY-RCKFCRTHLALANDLISRAFHCLRGKAYLFNNVVNFTIGTPEERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEV--TEELSLET 118
           MLSG+HTV DIFCCCCG+I+GWKY +AH+K QKYKEGKFVLER RIV+EV  + E  +++
Sbjct: 60  MLSGLHTVADIFCCCCGEIIGWKYESAHEKCQKYKEGKFVLERGRIVDEVDFSTEFYIDS 119

Query: 119 HTHSNEAETP 128
           H   ++AE P
Sbjct: 120 HASMSDAEEP 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728072|ref|NP_001238206.1| uncharacterized protein LOC100499933 [Glycine max] gi|255627805|gb|ACU14247.1| unknown [Glycine max]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 98/122 (80%), Gaps = 1/122 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F++EL GRSY  C+FCN+ LALAD +LS +FNC +GRAYLFS VVN+ LGPQ +R+
Sbjct: 1   MGRVFVLELDGRSY-GCKFCNTPLALADHILSRNFNCSQGRAYLFSKVVNVTLGPQVDRM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHT 120
           M+SG+HTVEDIFCC CGQ +GWKYV  H+KN+ YKEGKFVLERW IV+   EEL+ +   
Sbjct: 60  MISGLHTVEDIFCCSCGQPLGWKYVLTHEKNEIYKEGKFVLERWTIVDNEEEELNSDAQA 119

Query: 121 HS 122
            S
Sbjct: 120 GS 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2154674	129	AT5G53940 [Arabidopsis thalian	0.820	0.813	0.754	1.6e-40
TAIR|locus:2047736	130	AT2G40110 "AT2G40110" [Arabido	0.820	0.807	0.584	1.4e-32
TAIR|locus:2095269	128	AT3G08990 "AT3G08990" [Arabido	0.820	0.820	0.537	2.9e-32
TAIR|locus:2074708	162	AT3G11230 "AT3G11230" [Arabido	0.820	0.648	0.594	2e-31
TAIR|locus:2082053	121	AT3G55890 "AT3G55890" [Arabido	0.820	0.867	0.537	6.2e-30
DICTYBASE|DDB_G0267990	129	ypel "yippee-like protein" [Di	0.828	0.821	0.462	6.1e-23
TAIR|locus:1009023354	106	AT4G27745 "AT4G27745" [Arabido	0.75	0.905	0.479	7.8e-23
UNIPROTKB|Q96NS1	127	YPEL4 "Protein yippee-like 4"	0.687	0.692	0.522	2.6e-22
MGI|MGI:3605071	127	Ypel4 "yippee-like 4 (Drosophi	0.687	0.692	0.522	2.6e-22
RGD|1560142	127	Ypel4 "yippee-like 4 (Drosophi	0.687	0.692	0.522	2.6e-22

TAIR|locus:2154674 AT5G53940 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 80/106 (75%), Positives = 91/106 (85%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct:     1 MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 106
             MLSGMHTV DIFCCCCGQ VGWKY +AH+K QKYKEGKFVLER RI
Sbjct:    60 MLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRI 105

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047736 AT2G40110 "AT2G40110" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F+V L+G+  Y C+ C +HLA  + ++S SF+C+ G+AYLF+ V N+ +G  EERL
Sbjct:     1 MGRLFVVNLEGK-IYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERL 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 106
             M++G HTV DIFC  CG IVGWKY  AH+KNQKYKEGK VLER++I
Sbjct:    60 MMTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKI 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095269 AT3G08990 "AT3G08990" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 57/106 (53%), Positives = 85/106 (80%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F+++L+G   Y C++C +H A+ + ++S SF+C+ GRAYLF +VVN+ +G +E R+
Sbjct:     1 MGRLFVIDLEGL-VYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRV 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 106
             M++G HTV DIFC  CG +VGWKY  A+DK+QKYKEGKF+LER+++
Sbjct:    60 MITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKV 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074708 AT3G11230 "AT3G11230" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 63/106 (59%), Positives = 82/106 (77%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+FLV L+G+SY  C+ C ++LAL D V+S SF  R G+AYLFS VVN+  G +E+R+
Sbjct:    34 MGRLFLVNLEGKSY-SCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRM 92

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 106
             M++GMHTV DI+C  CG  VGWKY  A +KNQKYKEGK VLER+++
Sbjct:    93 MMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 138

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082053 AT3G55890 "AT3G55890" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 57/106 (53%), Positives = 81/106 (76%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F+V+L+G  Y  C+ C +HL+    ++S SF C+ GRAYLF++VVN+ +G +E+R+
Sbjct:     1 MGRVFMVDLEGNIYI-CKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRM 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 106
             M++G+H V DIFC  CG  VGWKY  AH+K+QKYKEGK VLE ++I
Sbjct:    60 MITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKI 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

DICTYBASE|DDB_G0267990 ypel "yippee-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 49/106 (46%), Positives = 68/106 (64%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F   L G S   C  C +HL L D ++S  F  R G A+LF    NI +GP E+R 
Sbjct:     1 MGRLFKTYLTGPSIICCLNCKTHLTLHDQLISKQFQGRHGTAFLFGTCSNITVGPSEDRT 60

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 106
             + +GMH V DI+C  CG+ +GWKY  A +++QKYK GK++LE+ +I
Sbjct:    61 LTTGMHIVADIYCIDCGETLGWKYEFAKEESQKYKVGKYILEKAKI 106

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:1009023354 AT4G27745 "AT4G27745" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 46/96 (47%), Positives = 68/96 (70%)

Query:    11 GRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVED 70
             G   Y C  C +H+ L D ++S +F  R GRA+LFS  +NI++GP+E+R +L+G+HTV D
Sbjct:     6 GPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVAD 65

Query:    71 IFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 106
             I C  C + +GWKY  A++ +QKYKEGKF+ E+ +I
Sbjct:    66 ISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKI 101

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96NS1 YPEL4 "Protein yippee-like 4" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct:    29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query:    75 CCGQIVGWKYVAAHDKNQKYKEGKFVLE 102
              C   +GWKY  A + +QKYKEGK+++E
Sbjct:    89 SCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:3605071 Ypel4 "yippee-like 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct:    29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query:    75 CCGQIVGWKYVAAHDKNQKYKEGKFVLE 102
              C   +GWKY  A + +QKYKEGK+++E
Sbjct:    89 SCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1560142 Ypel4 "yippee-like 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct:    29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query:    75 CCGQIVGWKYVAAHDKNQKYKEGKFVLE 102
              C   +GWKY  A + +QKYKEGK+++E
Sbjct:    89 SCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FN32	YIPL7_ARATH	No assigned EC number	0.6718	0.9765	0.9689	yes	no
P59234	YIPL_SOLTU	No assigned EC number	0.5234	0.9765	0.9689	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G53940	yippee family protein; yippee family protein; INVOLVED IN- biological_process unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Yippee-like protein (InterPro-IPR004910); BEST Arabidopsis thaliana protein match is- yippee family protein (TAIR-AT2G40110.1); Has 696 Blast hits to 696 proteins in 148 species- Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 132; Plants - 111; Viruses - 0; Other Eukaryotes - 52 (source- NCBI BLink). (129 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATNSI	ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase; Encodes a nuclear acetyltransferase ( [...] (258 aa)				•					0.694
	AT5G52960	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (170 aa)				•					0.641
	AT1G68660	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protein catabolic proce [...] (159 aa)				•					0.631
	AT1G68730	zinc finger (DNL type) family protein; zinc finger (DNL type) family protein; LOCATED IN- chlor [...] (170 aa)				•					0.619
	MBD8	MBD8; methyl-CpG binding; Protein containing methyl-CpG-binding domain.Has sequence similarity [...] (524 aa)				•					0.619
	ATARP4A	ATARP4A (Actin-related proteins 4A); protein binding / structural constituent of cytoskeleton; [...] (145 aa)				•					0.601
	AT5G17560	BolA-like family protein; BolA-like family protein; FUNCTIONS IN- transcription regulator activ [...] (177 aa)				•					0.597
	AT1G64510	ribosomal protein S6 family protein; ribosomal protein S6 family protein; FUNCTIONS IN- structu [...] (207 aa)				•					0.591
	AT1G73655	FK506 binding / peptidyl-prolyl cis-trans isomerase; FK506 binding / peptidyl-prolyl cis-trans [...] (234 aa)				•					0.589
	AT2G44920	thylakoid lumenal 15 kDa protein, chloroplast; thylakoid lumenal 15 kDa protein, chloroplast; F [...] (224 aa)				•					0.579

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	1e-55

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  168 bits (428), Expect = 1e-55
 Identities = 59/109 (54%), Positives = 78/109 (71%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+V L G   Y C+ C +HLAL   ++S SF  R GRAYLF+ VVN++ G  E+R 
Sbjct: 1   MGRLFVVYLTGGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQ 60

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRIVEE 109
           ML+G+HTV DIFC  CG  +GWKY  A++++QKYKEGKF+LER  I + 
Sbjct: 61  MLTGLHTVRDIFCVGCGTTLGWKYEFAYEESQKYKEGKFILERALITKI 109

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	99.98
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	95.9
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	94.88
PRK00222	142	methionine sulfoxide reductase B; Provisional	94.64
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	94.52
PRK05508	119	methionine sulfoxide reductase B; Provisional	93.76
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	92.36
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	91.58
PF14976	150	FAM72: FAM72 protein	88.11
KOG0856	146	consensus Predicted pilin-like transcription facto	88.01
COG0229	140	Conserved domain frequently associated with peptid	87.27

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=7e-54  Score=316.18  Aligned_cols=119  Identities=49%  Similarity=0.879  Sum_probs=116.0

Q ss_pred             CcceeeeccCCc-cEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCe
Q 033060            1 MGRIFLVELKGR-SYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQI   79 (128)
Q Consensus         1 MG~~f~~yl~g~-~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~   79 (128)
                      |||+|..+|++. +.|+|++|+||||.++|||||+|+|++|+||||++|+||..|+.|+|.|+||+|+|+||+|+.|++.
T Consensus         1 mgR~F~~~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~   80 (122)
T KOG3399|consen    1 MGRLFEAMLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTG   80 (122)
T ss_pred             CcchHHHHhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCC
Confidence            999999999984 7999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEEeccCCcceeCCeEEEEeeceeeecccccccccc
Q 033060           80 VGWKYVAAHDKNQKYKEGKFVLERWRIVEEVTEELSLETH  119 (128)
Q Consensus        80 lGWkY~~A~e~sqkYKEGkfILE~~~i~~~~g~~~~~~~~  119 (128)
                      |||||+.|||+||||||||||||+++|.+++|++.|+.++
T Consensus        81 ~GWkYe~a~e~sQkyKEGk~ilE~~~i~~~~g~~~~~~~~  120 (122)
T KOG3399|consen   81 LGWKYEHAYEKSQKYKEGKFILELAEIFKPEGWDLEVGAL  120 (122)
T ss_pred             cceeeeeccCchhhhcCcchHHHHHHhcCCCCchhhcCCC
Confidence            9999999999999999999999999999999999998654

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=99.98  E-value=6.2e-33  Score=193.90  Aligned_cols=89  Identities=45%  Similarity=0.915  Sum_probs=85.3

Q ss_pred             EEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeecc----EEEeeeeeeecCCeeeeEEEEecc
Q 033060           14 YYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGM----HTVEDIFCCCCGQIVGWKYVAAHD   89 (128)
Q Consensus        14 ~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~----H~V~DI~C~~C~~~lGWkY~~A~e   89 (128)
                      +|.|++|++||+++++|+|  |+|+.|+||||+   ||..+++++|.|+||.    |+|+||+|++|++.|||||++|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   7778888999999999    999999999999999999999999


Q ss_pred             CCcceeCCeEEEEeeceee
Q 033060           90 KNQKYKEGKFVLERWRIVE  108 (128)
Q Consensus        90 ~sqkYKEGkfILE~~~i~~  108 (128)
                      + |+||||+||||++.|..
T Consensus        77 ~-~~~k~g~file~~~i~~   94 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASISS   94 (96)
T ss_pred             h-HhhhCCEEEEEhhHEEE
Confidence            9 99999999999999863

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=95.90  E-value=0.0046  Score=45.55  Aligned_cols=88  Identities=17%  Similarity=0.165  Sum_probs=57.4

Q ss_pred             EEeccCCCCcccCCCCeeeeccccC--CCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEEeccCC
Q 033060           14 YYKCRFCNSHLALADSVLSWSFNCR--RGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKN   91 (128)
Q Consensus        14 ~y~C~~C~thLa~~~~lISk~F~G~--~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e~s   91 (128)
                      .+-|++|.+.++..+||-.-.-+..  -.+.  |...+.+...|++.....-+.+....|+|..|++.+|-.+..---+=
T Consensus         4 ~llC~kC~~~~C~~~DIr~ie~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~~L   81 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKIENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGVEL   81 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEETTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTEEE
T ss_pred             EEECCCCCceeEchhheEEecCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCccc
Confidence            5889999999999999876521100  0112  22455556665554445557889999999999999998776543334


Q ss_pred             cceeCCeEEEEe
Q 033060           92 QKYKEGKFVLER  103 (128)
Q Consensus        92 qkYKEGkfILE~  103 (128)
                      .-.|.-.|+++.
T Consensus        82 P~L~iksfvv~~   93 (123)
T PF11648_consen   82 PCLKIKSFVVEL   93 (123)
T ss_dssp             EEE-GGGEEEEE
T ss_pred             cEEEeeeeeeee
Confidence            455555666443

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=94.88  E-value=0.03  Score=42.44  Aligned_cols=68  Identities=15%  Similarity=0.339  Sum_probs=42.2

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (128)
                      +-+|.|+.|.++|-.+++    .|....|=.-.+..+-.-.+...+|..  -|+.. ..|.|..|+.+||--...
T Consensus        38 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~D  105 (134)
T TIGR00357        38 EGIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEVVAYERDES--HGMIR-TEVRCRNCDAHLGHVFDD  105 (134)
T ss_pred             CeEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCceEEeecCC--CCcEE-EEEEecCCCCccCcccCC
Confidence            358999999999987764    355555544434444111122233322  24444 579999999999975543

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=94.64  E-value=0.028  Score=42.94  Aligned_cols=87  Identities=14%  Similarity=0.304  Sum_probs=50.3

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEEeccCC
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKN   91 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e~s   91 (128)
                      +-+|.|+.|.++|=.+++    .|....|=.-.+..+-.-.+...+|+  .-|+.. ..|.|..|+.+||--......++
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~V~~~~D~--s~gm~R-tEv~C~~Cg~HLGHVF~DGP~pt  113 (142)
T PRK00222         41 KGIYVCIVCGEPLFSSDT----KFDSGCGWPSFTKPIDEEAIRELRDT--SHGMVR-TEVRCANCDSHLGHVFPDGPKPT  113 (142)
T ss_pred             CeEEEecCCCchhcCCcc----cccCCCCCcCcCcccCCCceEEeecc--CCCceE-EEEEeCCCCCccCcccCCCCCCC
Confidence            458999999999987743    46656665444444422122222332  223322 57999999999998664432221


Q ss_pred             cceeCCeEEEEeeceeee
Q 033060           92 QKYKEGKFVLERWRIVEE  109 (128)
Q Consensus        92 qkYKEGkfILE~~~i~~~  109 (128)
                          -=+|-|.-+-|.-.
T Consensus       114 ----g~RyCINs~sL~F~  127 (142)
T PRK00222        114 ----GLRYCINSASLKFI  127 (142)
T ss_pred             ----CCEeeeceeeEEee
Confidence                11565555555443

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=94.52  E-value=0.031  Score=41.77  Aligned_cols=71  Identities=20%  Similarity=0.436  Sum_probs=43.2

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEEecc
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHD   89 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e   89 (128)
                      +-+|.|+.|.++|=.++.    .|....|=.-.+..+..-.+....|..  -|+. -..|.|..|+.+||=-......
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~v~~~~D~s--~g~~-R~Ev~C~~Cg~HLGHVF~DGp~  105 (124)
T PF01641_consen   35 EGIYVCAVCGTPLFSSDT----KFDSGCGWPSFWQPIPGDAVKEREDFS--HGMV-RTEVRCARCGSHLGHVFDDGPP  105 (124)
T ss_dssp             SEEEEETTTS-EEEEGGG----EETSSSSSSEESSCSSTTSEEEEEEEC--TSSE-EEEEEETTTCCEEEEEESTSST
T ss_pred             CEEEEcCCCCCccccCcc----cccCCcCCccccCcCChHHEEEecccc--CCce-EEEEEecCCCCccccEeCCCCC
Confidence            458999999999976653    465555554434443332222233322  2444 4478999999999986665444

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=93.76  E-value=0.071  Score=39.71  Aligned_cols=63  Identities=19%  Similarity=0.468  Sum_probs=42.1

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY   84 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY   84 (128)
                      +-+|.|+.|.++|=.+++    .|....|=.-.+..+-| .+...+|..   | + =..|.|+.|+.+||--.
T Consensus        31 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~-~v~~~~D~~---~-~-RtEv~C~~C~~HLGHVF   93 (119)
T PRK05508         31 KGTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKG-AVKRIPDAD---G-R-RTEIVCANCGGHLGHVF   93 (119)
T ss_pred             CeEEEecCCCCccccccc----cccCCCCCcccCccccc-ceEEEecCC---C-c-EEEEEeCCCCCccCccc
Confidence            358999999999987764    46666665444555533 223334433   2 2 46799999999999744

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=92.36  E-value=0.11  Score=43.50  Aligned_cols=64  Identities=22%  Similarity=0.461  Sum_probs=42.3

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (128)
                      +-+|.|+.|+++|=.+++    .|....|=.-.+..+-|-.. ..++..   |+  =..|.|..|+.+||--..
T Consensus        34 ~G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~~~-~~~d~~---~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         34 KGVYLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGAVK-RLPDAD---GR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             CcEEEcCCCCchhcCChh----hccCCCCCcCcCcccCCccE-EEEcCC---Cc--eEEEEecCCCCccCcccC
Confidence            358999999999987654    46555665444555544322 222222   33  478999999999998654

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=91.58  E-value=0.18  Score=45.45  Aligned_cols=68  Identities=7%  Similarity=0.069  Sum_probs=43.2

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (128)
                      +-+|.|+.|+++|=+++    ..|....|=.-.+..+-+-.+....|.  .-|++. ..|.|..|+.+||-....
T Consensus       416 ~G~y~c~~c~~pLf~s~----~Kf~sg~GWPsF~~~i~~~~v~~~~d~--s~g~~R-~Ev~c~~c~~HLGHvf~d  483 (521)
T PRK14018        416 PGIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKVVTEHDDF--SYNMRR-TEVRSRAADSHLGHVFPD  483 (521)
T ss_pred             CEEEEecCCCCccccCc----ccccCCCCCcccCcccCcCceEEeecc--CCCceE-EEEEECCCCCcCCcccCC
Confidence            46999999999998875    346656665443444432222222332  224444 379999999999986644

>PF14976 FAM72: FAM72 protein

Probab=88.11  E-value=1.1  Score=34.75  Aligned_cols=77  Identities=30%  Similarity=0.565  Sum_probs=46.7

Q ss_pred             cEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccC----Ccccceeeeecc--------EEEeeeeeeecCCee
Q 033060           13 SYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIML----GPQEERLMLSGM--------HTVEDIFCCCCGQIV   80 (128)
Q Consensus        13 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~----g~~e~r~m~TG~--------H~V~DI~C~~C~~~l   80 (128)
                      .+..|+.|.+-|+...           =||.|..+ .|+.+    -||....-.+|.        =.++|+-|..|+..|
T Consensus        14 ~~L~C~~C~~~l~~Rg-----------MkAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~v   81 (150)
T PF14976_consen   14 YILCCKFCDQVLCNRG-----------MKAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIV   81 (150)
T ss_pred             EEEECCCCCchhccch-----------hhheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCee
Confidence            3689999999887533           24666554 33332    122222222333        369999999999999


Q ss_pred             eeEEEEeccC-CcceeCCeEEE
Q 033060           81 GWKYVAAHDK-NQKYKEGKFVL  101 (128)
Q Consensus        81 GWkY~~A~e~-sqkYKEGkfIL  101 (128)
                      |+..+..=.. -+.-.-|.|-+
T Consensus        82 GYhV~~PC~~Cl~scNNGH~wm  103 (150)
T PF14976_consen   82 GYHVVVPCSRCLSSCNNGHFWM  103 (150)
T ss_pred             eeEEEEEcchHhcCccCCceEE
Confidence            9988765321 12234666665

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=88.01  E-value=0.8  Score=35.25  Aligned_cols=66  Identities=20%  Similarity=0.397  Sum_probs=38.3

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceee-eeccEEEeeeeeeecCCeeeeEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLM-LSGMHTVEDIFCCCCGQIVGWKYV   85 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m-~TG~H~V~DI~C~~C~~~lGWkY~   85 (128)
                      +-+|.|..|.++|-.+.    .-|....|=--.|+.+ +  .|....+.. .-|.| =.+|.|..|+.+||--.+
T Consensus        52 ~GvY~C~~C~~pLykS~----tKfdsgcGWPAF~e~i-~--~gaI~r~~d~s~~~~-R~Ev~Ca~C~~HLGHVF~  118 (146)
T KOG0856|consen   52 EGVYVCAGCGTPLYKST----TKFDSGCGWPAFFEAI-G--PGAITRTPDNSRGGR-RTEVSCATCGGHLGHVFK  118 (146)
T ss_pred             CceEEEeecCCcccccc----ccccCCCCCchhhhcc-C--CCceeeccccCCCCc-ceEEEEeecCCceeeeec
Confidence            46999999999997764    3465555542223332 1  222111111 11222 357899999999997543

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=87.27  E-value=0.93  Score=34.72  Aligned_cols=65  Identities=20%  Similarity=0.431  Sum_probs=41.5

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWK   83 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWk   83 (128)
                      +-+|.|+.|..+|=.+++    .|....|=--.+..+..-.+...+|+  .-|++.+ .|.|..|+++||--
T Consensus        40 ~GiY~c~~cg~pLF~S~~----KfdSgcGWPSF~~pi~~~~I~~~~D~--S~gM~Rt-EVrc~~c~sHLGHV  104 (140)
T COG0229          40 KGIYVCIVCGEPLFSSED----KFDSGCGWPSFTKPISPDAITYKEDR--SHGMVRT-EVRCANCDSHLGHV  104 (140)
T ss_pred             CceEEeecCCCccccccc----cccCCCCCccccccCCcccceEeecc--CCCcEEE-EEEecCCCCccccc
Confidence            359999999999987765    35555554333444433333333342  3355543 68999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	95.32
3ga3_A	133	Interferon-induced helicase C domain-containing pr	94.6
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	93.89
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	93.4
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	93.3
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	93.0
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	92.49
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	92.23
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	91.78
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	91.6
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	91.35
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	91.31
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	88.98
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	86.63
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	86.18

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=95.32  E-value=0.025  Score=42.23  Aligned_cols=108  Identities=14%  Similarity=0.116  Sum_probs=64.1

Q ss_pred             cCCccEEeccCCCCcccCCCCeeeecc--ccCCCeEEEeeccccccCCccc-ceeeeeccEEEeeeeeeecCCeeeeEEE
Q 033060            9 LKGRSYYKCRFCNSHLALADSVLSWSF--NCRRGRAYLFSDVVNIMLGPQE-ERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (128)
Q Consensus         9 l~g~~~y~C~~C~thLa~~~~lISk~F--~G~~G~AyLf~~v~Nv~~g~~e-~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (128)
                      .++.-.+-|++|.+.++..+||-.-.-  +=--+++  |...+.+..+|.. .+. ..+..+-..|.|.+|++.+|-...
T Consensus         8 ~~s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~-f~d~~~~g~I~C~~Cgq~WG~~m~   84 (145)
T 3eqt_A            8 PVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKV-FKDWKPGGVISCRNCGEVWGLQMI   84 (145)
T ss_dssp             CGGGCEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSC-CSSEEEEEEEEETTTCCEEEEEEE
T ss_pred             CchheEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcc-cccccCCcEEEchhhChhhHhhEE
Confidence            344457999999999999999754311  0000011  1122222212211 111 344567788999999999998776


Q ss_pred             EeccCCcceeCCeEEEEeeceeeeccccccccccCC
Q 033060           86 AAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHTH  121 (128)
Q Consensus        86 ~A~e~sqkYKEGkfILE~~~i~~~~g~~~~~~~~~~  121 (128)
                      .---+=.-.|.-.|+||...-...  -..|-+-+-.
T Consensus        85 yk~~~LP~LkIksFVve~~~g~~~--~kKWk~vpf~  118 (145)
T 3eqt_A           85 YKSVKLPVLKVRSMLLETPQGRIQ--AKKWSRVPFS  118 (145)
T ss_dssp             ETTEEEEEECGGGEEEEETTEEEC--CSCGGGCSSC
T ss_pred             eccccCceEeEEEEEEEcCCCcEe--ccccccCccc
Confidence            555556778889999876444332  3456655443

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=94.60  E-value=0.017  Score=42.56  Aligned_cols=87  Identities=15%  Similarity=0.207  Sum_probs=55.2

Q ss_pred             cEEeccCCCCcccCCCCeeeec--cccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEEeccC
Q 033060           13 SYYKCRFCNSHLALADSVLSWS--FNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDK   90 (128)
Q Consensus        13 ~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e~   90 (128)
                      -.+-|++|.+.++..+||-.-.  -+=--+++  |...+.+..-+...+. ..+..+-..|.|. |++.+|-....---+
T Consensus        11 vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~   86 (133)
T 3ga3_A           11 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGLD   86 (133)
T ss_dssp             EEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTEE
T ss_pred             EEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhEEecccc
Confidence            4699999999999999975431  11011111  1233333322222233 4667788999999 999999876654444


Q ss_pred             CcceeCCeEEEEe
Q 033060           91 NQKYKEGKFVLER  103 (128)
Q Consensus        91 sqkYKEGkfILE~  103 (128)
                      =.-.|.-.|+||.
T Consensus        87 LP~LkIksFVve~   99 (133)
T 3ga3_A           87 LPCLKIRNFVVVF   99 (133)
T ss_dssp             EEEECGGGEEEEE
T ss_pred             CceEEEEEEEEEc
Confidence            6677888888774

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=93.89  E-value=0.042  Score=39.79  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=56.1

Q ss_pred             CccEEeccCCCCcccCCCCeeeec--cccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeee--ecCCeeeeEEEE
Q 033060           11 GRSYYKCRFCNSHLALADSVLSWS--FNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVA   86 (128)
Q Consensus        11 g~~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~   86 (128)
                      ++..+-|++|.+.++..+||-.-.  -+=--+++|  ...+.+...+. .+. .-+.++-..|.|.  +|++.+|-....
T Consensus         2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   77 (121)
T 3lrr_A            2 ENKKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKY   77 (121)
T ss_dssp             CCEEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEE
T ss_pred             CCEEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEe
Confidence            456799999999999999974321  110001111  12222322222 222 2456788899999  999999987765


Q ss_pred             eccCCcceeCCeEEEEe
Q 033060           87 AHDKNQKYKEGKFVLER  103 (128)
Q Consensus        87 A~e~sqkYKEGkfILE~  103 (128)
                      ---+=.-.|.-.|+||.
T Consensus        78 k~~~LP~LkI~sfvve~   94 (121)
T 3lrr_A           78 KTFEIPVIKIESFVVED   94 (121)
T ss_dssp             TTEEEEEECGGGEEEEE
T ss_pred             ccccCceEEEEEEEEEe
Confidence            54446777888888775

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=93.40  E-value=0.04  Score=41.18  Aligned_cols=67  Identities=10%  Similarity=0.150  Sum_probs=42.5

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (128)
                      +-+|.|+.|.++|=.+++    .|....|=--.+..+-+ .+...+|+.  -|+.. ..|.|..|+.+||--...
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  106 (144)
T 3e0o_A           40 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFND  106 (144)
T ss_dssp             SEEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESC
T ss_pred             CEEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCC
Confidence            358999999999877654    45555554333444433 333333432  24433 469999999999986543

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=93.30  E-value=0.041  Score=41.16  Aligned_cols=68  Identities=7%  Similarity=0.078  Sum_probs=41.0

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (128)
                      +-+|.|+.|.++|=.+++    .|....|=--.+..+-.-.+...+|+.  -|+. =..|.|+.|+.+||--...
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  108 (146)
T 3hcg_A           41 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMR-RTEVRSHAADSHLGHVFPD  108 (146)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEE--TTEE-EEEEEETTTCCEEEEEESC
T ss_pred             CEEEEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCC--CCcE-EEEEEeCCCCCccCceeCC
Confidence            458999999999876653    455555543333333211122223332  2443 3578999999999975543

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=93.00  E-value=0.095  Score=39.08  Aligned_cols=79  Identities=22%  Similarity=0.318  Sum_probs=53.1

Q ss_pred             cEEeccCCCCcccCCCCe----------eeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeee--ecCCee
Q 033060           13 SYYKCRFCNSHLALADSV----------LSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIV   80 (128)
Q Consensus        13 ~~y~C~~C~thLa~~~~l----------ISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~l   80 (128)
                      -.+.|++|.+.+++.+||          +.+.|.          ..+.+..-+.. + ..-+..+-..|+|.  +|++.+
T Consensus        26 v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~~-k-~f~d~~~~g~I~C~~~~Cg~~W   93 (145)
T 2qfd_A           26 KKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPKP-K-QFSSFEKRAKIFCARQNCSHDW   93 (145)
T ss_dssp             CEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSSC-C-CCSSEEEEEEEEECSTTTCCEE
T ss_pred             eEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCccc-c-hhhceeCCceEEeCCcccCcch
Confidence            469999999999999998          444554          22222211111 1 14445678899999  999999


Q ss_pred             eeEEEEeccCCcceeCCeEEEEe
Q 033060           81 GWKYVAAHDKNQKYKEGKFVLER  103 (128)
Q Consensus        81 GWkY~~A~e~sqkYKEGkfILE~  103 (128)
                      |-....---+-.-.|.-.|+||.
T Consensus        94 G~~m~yk~~~lP~LkIksFVv~~  116 (145)
T 2qfd_A           94 GIHVKYKTFEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEETTEEEEEECGGGEEEEC
T ss_pred             hceEEEccccCceEEEEEEEEEe
Confidence            98765543446667788888864

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=92.49  E-value=0.083  Score=38.75  Aligned_cols=88  Identities=15%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             ccEEeccCCCCcccCCCCeeeec--cccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeee--ecCCeeeeEEEEe
Q 033060           12 RSYYKCRFCNSHLALADSVLSWS--FNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAA   87 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A   87 (128)
                      +..+-|++|.+.++..+||-.-.  -+=--+++|  ...+.+..-+. .+. .-..++-..|.|.  +|++.+|-....-
T Consensus         5 ~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk   80 (131)
T 4a2v_A            5 QKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYL   80 (131)
T ss_dssp             CCEEEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEET
T ss_pred             ceEEEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeec
Confidence            46799999999999999974321  100001110  12222211111 222 2355678889999  9999988766543


Q ss_pred             ccC-CcceeCCeEEEEe
Q 033060           88 HDK-NQKYKEGKFVLER  103 (128)
Q Consensus        88 ~e~-sqkYKEGkfILE~  103 (128)
                      --+ =.-.|.-.|+||.
T Consensus        81 ~~~~LP~LkIksFVve~   97 (131)
T 4a2v_A           81 TFDNLPVIKIKSFVMES   97 (131)
T ss_dssp             TEEEEEEECGGGEEECC
T ss_pred             CcccCceEeEEEEEEEe
Confidence            222 4467778888764

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=92.23  E-value=0.058  Score=41.10  Aligned_cols=67  Identities=18%  Similarity=0.430  Sum_probs=41.4

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (128)
                      +-+|.|+.|.++|=.+++    .|....|=.-.+..+-+-.+...+|..  -|+. -..|.|..|+.+||=-..
T Consensus        71 ~GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  137 (164)
T 3cxk_A           71 AGIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGMT-RVEVRCNQCGAHLGHVFE  137 (164)
T ss_dssp             SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGCC-EEEEEETTTCCEEEEEES
T ss_pred             CeEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCcE-EEEEEeCCCCCccCcccC
Confidence            358999999999877653    465555544434443221222233322  2442 457999999999998553

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=91.78  E-value=0.084  Score=38.54  Aligned_cols=64  Identities=16%  Similarity=0.277  Sum_probs=37.8

Q ss_pred             cEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEE
Q 033060           13 SYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY   84 (128)
Q Consensus        13 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY   84 (128)
                      -+|.|+.|.++|=.+++=    |....|=.-.+..+-.-.+-..+++   .++. ...|.|+.|+.+||=-.
T Consensus        19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred             EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence            599999999999887653    5545554222333211111111221   2222 35799999999999743

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=91.60  E-value=0.056  Score=40.65  Aligned_cols=67  Identities=21%  Similarity=0.482  Sum_probs=41.4

Q ss_pred             cEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEE
Q 033060           13 SYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (128)
Q Consensus        13 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (128)
                      -+|.|+.|.++|=.+++    .|....|=--.+..+-.-.+...+|+.  -|+. -..|.|..|+.+||--...
T Consensus        60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRS--LGMV-RCEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBT--TSSC-EEEEEETTEEEEEEEEEEC
T ss_pred             EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCC--CCce-EEEEEeCCCCCcCCcccCC
Confidence            58999999999876653    465556643334443221222233332  2333 2468999999999986643

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=91.35  E-value=0.054  Score=38.50  Aligned_cols=65  Identities=15%  Similarity=0.294  Sum_probs=38.7

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY   84 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY   84 (128)
                      +-+|.|+.|.++|=.+++    .|....|=--.+..+-.-.+...++.   .++ .-..|.|+.|+.+||--.
T Consensus        11 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           11 PGVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred             CEEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence            459999999999876653    35555554333433321111111121   122 246899999999999755

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=88.98  E-value=0.073  Score=40.16  Aligned_cols=87  Identities=17%  Similarity=0.349  Sum_probs=47.2

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEEeccCC
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKN   91 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e~s   91 (128)
                      +-+|.|+.|.++|=.+++    .|....|=--.+..+-.-.+...+|..  -|+. =..|.|..|+.+||--......+ 
T Consensus        48 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~DGP~p-  119 (154)
T 3hcj_A           48 DGVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFPDGPPP-  119 (154)
T ss_dssp             SEEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEESCSCTT-
T ss_pred             CEEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccCCCCCC-
Confidence            358999999999876654    355444432223333111111122221  1333 24789999999999755433211 


Q ss_pred             cceeCCeEEEEeeceeee
Q 033060           92 QKYKEGKFVLERWRIVEE  109 (128)
Q Consensus        92 qkYKEGkfILE~~~i~~~  109 (128)
                         .-=+|-|.-+-|.-.
T Consensus       120 ---tg~RyCiNS~sL~F~  134 (154)
T 3hcj_A          120 ---TGERHCLNSVSLAFT  134 (154)
T ss_dssp             ---TTCEEEECGGGEEEE
T ss_pred             ---CCCEeeeceeeEEee
Confidence               112566665555543

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=86.63  E-value=0.17  Score=37.63  Aligned_cols=86  Identities=16%  Similarity=0.315  Sum_probs=47.6

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeecccccc--------CCcccceeeeeccEEEeeeeeeecCCeeeeE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIM--------LGPQEERLMLSGMHTVEDIFCCCCGQIVGWK   83 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~--------~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWk   83 (128)
                      +-+|.|+.|.++|=++++    .|....|=.- |.+.+++.        +...+|+  .-|+. =..|.|+.|+.+||=-
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~--s~gm~-RtEV~C~~Cg~HLGHV  106 (143)
T 2l1u_A           35 TGMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDT--SLGCP-RMEVVCKQCEAHLGHV  106 (143)
T ss_dssp             CEEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEEC--TTSSC-EEEEEESSSCCCCEEE
T ss_pred             CeEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeecc--cCCce-EEEEEECCCCCcCCcc
Confidence            358999999999876654    4554444322 23333211        1111222  11333 3469999999999986


Q ss_pred             EEEeccCCcceeCCeEEEEeeceeee
Q 033060           84 YVAAHDKNQKYKEGKFVLERWRIVEE  109 (128)
Q Consensus        84 Y~~A~e~sqkYKEGkfILE~~~i~~~  109 (128)
                      ....    .+=+==+|-|.-+-|.-.
T Consensus       107 F~DG----P~ptg~RyCINS~sL~F~  128 (143)
T 2l1u_A          107 FPDG----PKPTGQRFCINSVALKFK  128 (143)
T ss_dssp             ECCS----SCGGGCEEEECCTTEEEE
T ss_pred             cCCC----CCCCCCEEEeeeeEEecc
Confidence            5432    211222666666665554

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=86.18  E-value=0.33  Score=40.20  Aligned_cols=67  Identities=12%  Similarity=0.082  Sum_probs=40.6

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (128)
                      +-+|.|+.|.++|=+++    ..|....|=--.+..+-.-.+...+|++  -|+. =..|.|..|+.+||--..
T Consensus       207 ~G~Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s--~gm~-RtEv~c~~c~~HLGHVF~  273 (313)
T 3e0m_A          207 EGIYVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLS--HGME-RIEVRSRSGSAHLGHVFT  273 (313)
T ss_dssp             SEEEEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECC--TTCC-EEEEEESSSCCEEEEEES
T ss_pred             CeEEEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCC--CCcE-EEEEECCCCCCccCcccC
Confidence            35899999999986664    3466555543333333211112223322  2443 357999999999997554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	91.88
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	91.57

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=91.88  E-value=0.033  Score=39.65  Aligned_cols=68  Identities=7%  Similarity=0.078  Sum_probs=40.0

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (128)
                      +-+|.|+.|.++|=.+++    .|....|=.-.+..+-+-.+....+.  .-|+.. ..|.|..|+.+||=-...
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~--s~gm~R-~Ev~C~~Cg~HLGHVF~D  107 (144)
T d1l1da_          40 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDF--SFNMRR-TEVRSRAADSHLGHVFPD  107 (144)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEEC--CTTSCE-EEEEETTTCCEEEEEESC
T ss_pred             cCceEeccccceeeehhh----cccCCccceeeccccccccccceecc--cccccc-eeeEecCCCCccCcccCC
Confidence            358999999999976554    35555554332333332222222221  113332 379999999999975543

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.57  E-value=0.039  Score=39.32  Aligned_cols=66  Identities=11%  Similarity=0.138  Sum_probs=39.5

Q ss_pred             ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEE
Q 033060           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (128)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (128)
                      +-+|.|+.|.++|=.+++    .|....|=.-.+..+-+-.. ..+|..  -|+ .=..|.|+.|+.+||=-..
T Consensus        39 ~G~Y~C~~C~~pLF~S~~----KfdSg~GWPSF~~~i~~~v~-~~~D~s--~gm-~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          39 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEEEVE-EKLDTS--HGM-IRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             SEEEEESSTTCEEEETTT----CCCCCSSSCCEEESCCCSEE-EECCCC--TTC-CCCEEEESSCTTCCCEEEE
T ss_pred             CceEEeccccchhhhhhh----hhccCCccceeecccccceE-EEecCC--CCc-cccceEecCCCCccCccCC
Confidence            358999999999977765    35555554333444333211 112211  121 2357899999999996553