Citrus Sinensis ID: 033075

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHccccccccccccccccccccEEEEEEccEEEEEEEEccccccHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccEEEEEEEcccccHHHHHHHHccHHHHccccccccccccccEEEEEccEccEEEEEEEEcccHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHcHHHHccccc
Coil and Loop (DISEMBL)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSnveglppdrivptvglnigrievsnsklvfwdlggqpglrSIWEKYYEEAHAVVFVIdaacpsrfedskTALGKFfgmrickerhf
Flexible Loop (DISEMBL)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVysnveglppdriVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF
Low Complexity Region (SEG)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF
Disordered region (IsUnstruct)
**SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRIC*****
Disordered Region (DISOPRED)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE***
Disordered Region (DISEMBL)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF
Disordered Region (DISPRO)
*FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRIC*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q32LJ2	201	ADP-ribosylation factor-r	yes	no	0.914	0.582	0.5	2e-29
Q5R579	201	ADP-ribosylation factor-r	yes	no	0.906	0.577	0.495	3e-29
Q13795	201	ADP-ribosylation factor-r	no	no	0.906	0.577	0.495	3e-29
Q63055	201	ADP-ribosylation factor-r	yes	no	0.906	0.577	0.495	4e-29
Q8BXL7	201	ADP-ribosylation factor-r	yes	no	0.906	0.577	0.495	4e-29
Q02804	198	ADP-ribosylation factor-l	yes	no	0.882	0.570	0.417	4e-20
Q8BGX0	574	E3 ubiquitin-protein liga	no	no	0.789	0.175	0.398	2e-16
P36406	574	E3 ubiquitin-protein liga	no	no	0.789	0.175	0.398	2e-16
P26991	191	ADP-ribosylation factor O	N/A	no	0.773	0.518	0.383	3e-16
Q09654	539	E3 ubiquitin-protein liga	no	no	0.75	0.178	0.4	3e-16

>sp|Q32LJ2|ARFRP_BOVIN ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 84/118 (71%), Gaps = 1/118 (0%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKM 118

Possibly involved in plasma membrane-related signaling events.
Bos taurus (taxid: 9913)

>sp|Q5R579|ARFRP_PONAB ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 84/117 (71%), Gaps = 1/117 (0%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEK 117

Possibly involved in plasma membrane-related signaling events.

Pongo abelii (taxid: 9601)

>sp|Q13795|ARFRP_HUMAN ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 84/117 (71%), Gaps = 1/117 (0%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEK 117

Possibly involved in plasma membrane-related signaling events.

Homo sapiens (taxid: 9606)

>sp|Q63055|ARFRP_RAT ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 84/117 (71%), Gaps = 1/117 (0%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEK 117

Possibly involved in plasma membrane-related signaling events.

Rattus norvegicus (taxid: 10116)

>sp|Q8BXL7|ARFRP_MOUSE ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 84/117 (71%), Gaps = 1/117 (0%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEK 117

Possibly involved in plasma membrane-related signaling events.

Mus musculus (taxid: 10090)

>sp|Q02804|ARL3_YEAST ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARL3 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MF L  GL+     K ++ +LILG+D AGKTT LE LK  YS +     ++I PTVG N+
Sbjct: 1   MFHLVKGLYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYS-LAFKALEKIQPTVGQNV 59

Query: 61  GRIEVSNSKLV-FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
             I V + +++ FWD+GGQ  LRS+W +YY   H ++F++D++   R ++  T L
Sbjct: 60  ATIPVDSKQILKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTL 114

Involved in the targeting of ARL1 to the Golgi. Can bind and hydrolyze GTP.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8BGX0|TRI23_MOUSE E3 ubiquitin-protein ligase TRIM23 OS=Mus musculus GN=Trim23 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 7/108 (6%)

Query: 11  YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKL 70
           +I  K E  V+ LG+D AGKTT+L KLK      E + P   +PT+G N+  +E  N K 
Sbjct: 398 HIGPKMEIRVVTLGLDGAGKTTILFKLK----QDEFMQP---IPTIGFNVETVEYKNLKF 450

Query: 71  VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
             WD+GG+  LR +W+ YY    AVVFV+D++   R  ++ + L K  
Sbjct: 451 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLL 498

Acts as an E3 ubiquitin-protein ligase (By similarity). The C-terminus can act as an allosteric activator of the cholera toxin catalytic subunit.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P36406|TRI23_HUMAN E3 ubiquitin-protein ligase TRIM23 OS=Homo sapiens GN=TRIM23 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 7/108 (6%)

Query: 11  YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKL 70
           +I  K E  V+ LG+D AGKTT+L KLK      E + P   +PT+G N+  +E  N K 
Sbjct: 398 HIGPKMEIRVVTLGLDGAGKTTILFKLK----QDEFMQP---IPTIGFNVETVEYKNLKF 450

Query: 71  VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
             WD+GG+  LR +W+ YY    AVVFV+D++   R  ++ + L K  
Sbjct: 451 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLL 498

Acts as an E3 ubiquitin-protein ligase. In the presence of the human cytomegalovirus (HCMV) protein UL144, participates in 'Lys-63'-linked auto-ubiquitination of TRAF6 resulting in the virally controlled activation of NF-kappa-B at early time of infection. The C-terminus can act as an allosteric activator of the cholera toxin catalytic subunit.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P26991|ARF_GIAIN ADP-ribosylation factor OS=Giardia intestinalis PE=3 SV=3

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 13/112 (11%)

Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
           +F+K E  +L++G+D AGKTT+L KL    V + V         PT+G N+  +E  N  
Sbjct: 12  LFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTV---------PTIGFNVETVEYKNIN 62

Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--PSRFEDSKTALGKFFG 119
              WD+GGQ  +R +W  YY+   A+++VID+A   P R ED+K  L    G
Sbjct: 63  FTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLG 114

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Giardia intestinalis (taxid: 5741)

>sp|Q09654|TRI23_CAEEL E3 ubiquitin-protein ligase arc-1 OS=Caenorhabditis elegans GN=arc-1 PE=3 SV=3

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 4/100 (4%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  V++LG+D AGKT+++ +LK V  +    P     PT+G NI  I   N +L FWD+G
Sbjct: 369 ESRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPH----PTIGFNIETIHYKNYRLNFWDVG 424

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           G P LR +W+ YY  A A+ +VID     RF ++   L +
Sbjct: 425 GLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNR 464

Acts as an E3 ubiquitin-protein ligase.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
224120084	204	predicted protein [Populus trichocarpa]	0.921	0.578	0.898	4e-58
255539493	204	ADP-ribosylation factor, putative [Ricin	0.921	0.578	0.906	9e-58
363807218	187	uncharacterized protein LOC100785527 [Gl	0.921	0.631	0.855	1e-56
356549001	204	PREDICTED: ADP-ribosylation factor-relat	0.921	0.578	0.855	1e-56
359495822	205	PREDICTED: ADP-ribosylation factor-relat	0.921	0.575	0.855	2e-56
255631240	141	unknown [Glycine max]	0.906	0.822	0.870	4e-56
224136948	204	predicted protein [Populus trichocarpa]	0.921	0.578	0.864	6e-56
449446037	205	PREDICTED: ADP-ribosylation factor-relat	0.921	0.575	0.872	6e-56
449446039	202	PREDICTED: ADP-ribosylation factor-relat	0.921	0.584	0.872	8e-56
255646406	204	unknown [Glycine max]	0.921	0.578	0.838	1e-55

>gi|224120084|ref|XP_002318238.1| predicted protein [Populus trichocarpa] gi|118488882|gb|ABK96250.1| unknown [Populus trichocarpa x Populus deltoides] gi|222858911|gb|EEE96458.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/118 (89%), Positives = 115/118 (97%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKYIF+KTEFHVLILGIDKAGKTTLLEKLKSV+SN+EGLPPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSVHSNLEGLPPDRIIPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPSRFED+K+AL K  
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSRFEDAKSALEKVL 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539493|ref|XP_002510811.1| ADP-ribosylation factor, putative [Ricinus communis] gi|223549926|gb|EEF51413.1| ADP-ribosylation factor, putative [Ricinus communis]

 Score =  228 bits (580), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 107/118 (90%), Positives = 114/118 (96%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+KTEFHVLILGIDKAGKTTLLEKLKS+YSN+EGLPPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLPPDRIVPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GRIEVS++KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA CPSRFEDSK+AL K  
Sbjct: 61  GRIEVSSTKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDATCPSRFEDSKSALEKVL 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807218|ref|NP_001242354.1| uncharacterized protein LOC100785527 [Glycine max] gi|255647885|gb|ACU24401.1| unknown [Glycine max]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 113/118 (95%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYSN+EG+PPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSNIEGIPPDRIIPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSRFED+K+AL K  
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRFEDAKSALEKVL 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549001|ref|XP_003542887.1| PREDICTED: ADP-ribosylation factor-related protein 1-like [Glycine max]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 113/118 (95%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYSN+EG+PPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSNIEGIPPDRIIPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSRFED+K+AL K  
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRFEDAKSALEKVL 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495822|ref|XP_002265687.2| PREDICTED: ADP-ribosylation factor-related protein 1-like [Vitis vinifera] gi|296086877|emb|CBI33044.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 114/118 (96%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+K EFHVLILGI+KAGKTTLLEKLK++YSN+EGLPPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKAEFHVLILGINKAGKTTLLEKLKALYSNLEGLPPDRILPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GR+E+SN+KLVFWDLGGQPGLRSIWEKYYEEAHAVV+VIDA+CPSRFEDSK+AL K  
Sbjct: 61  GRVELSNTKLVFWDLGGQPGLRSIWEKYYEEAHAVVYVIDASCPSRFEDSKSALEKIL 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255631240|gb|ACU15987.1| unknown [Glycine max]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/116 (87%), Positives = 113/116 (97%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYSN+EG+PPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSNIEGIPPDRIIPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSRFED+K+AL K
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRFEDAKSALEK 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136948|ref|XP_002322456.1| predicted protein [Populus trichocarpa] gi|222869452|gb|EEF06583.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 112/118 (94%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+KTE HVLILGIDKAGKTTLLEKLKSVYSN+EGLPPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYMFSKTELHVLILGIDKAGKTTLLEKLKSVYSNLEGLPPDRIVPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GRIEV NSKL+FWDLGGQPGLRSIWEKYY+EAHA+++VIDAACPSRFED+K+ L K  
Sbjct: 61  GRIEVENSKLLFWDLGGQPGLRSIWEKYYDEAHALIYVIDAACPSRFEDAKSELEKVL 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446037|ref|XP_004140778.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 1 [Cucumis sativus] gi|449520110|ref|XP_004167077.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 1 [Cucumis sativus]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 113/118 (95%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+KTEFHVLILGIDKAGKTTLLEKLKS+YSN+EGL PDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GR+EV N+KLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPS+FEDSK+AL K  
Sbjct: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVL 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446039|ref|XP_004140779.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 2 [Cucumis sativus] gi|449520112|ref|XP_004167078.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 2 [Cucumis sativus]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 113/118 (95%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+KTEFHVLILGIDKAGKTTLLEKLKS+YSN+EGL PDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GR+EV N+KLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPS+FEDSK+AL K  
Sbjct: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVL 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646406|gb|ACU23682.1| unknown [Glycine max]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/118 (83%), Positives = 112/118 (94%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYS++EG+PPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSDIEGIPPDRIIPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSR ED+K+AL K  
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRLEDAKSALEKVL 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2145151	205	GB1 "GTP-binding protein 1" [A	0.906	0.565	0.818	4.1e-49
DICTYBASE|DDB_G0283631	216	arfrp1 "ARF-like protein" [Dic	0.890	0.527	0.543	2.2e-34
ZFIN|ZDB-GENE-050227-14	201	arfrp1 "ADP-ribosylation facto	0.906	0.577	0.512	1.2e-28
UNIPROTKB|Q32LJ2	201	ARFRP1 "ADP-ribosylation facto	0.906	0.577	0.504	2.4e-28
UNIPROTKB|E1C1J0	201	ARFRP1 "Uncharacterized protei	0.906	0.577	0.495	3.1e-28
MGI|MGI:1923938	201	Arfrp1 "ADP-ribosylation facto	0.906	0.577	0.495	3.1e-28
RGD|621683	201	Arfrp1 "ADP-ribosylation facto	0.906	0.577	0.495	3.1e-28
UNIPROTKB|Q13795	201	ARFRP1 "ADP-ribosylation facto	0.906	0.577	0.495	3.9e-28
FB|FBgn0030088	200	CG7039 [Drosophila melanogaste	0.906	0.58	0.495	8.2e-28
UNIPROTKB|J9P4D5	201	ARFRP1 "Uncharacterized protei	0.906	0.577	0.495	5.7e-27

TAIR|locus:2145151 GB1 "GTP-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 95/116 (81%), Positives = 108/116 (93%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
             MFSL  GLW Y+F+KTEF+VLILGIDKAGKTT LEKLK++YS  EGLP DRIVPTVGLNI
Sbjct:     1 MFSLMSGLWSYMFSKTEFNVLILGIDKAGKTTFLEKLKTIYSISEGLPHDRIVPTVGLNI 60

Query:    61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             GRIEVSN+K+VFWDLGGQPGLRSIWEKYYEEAHA++++IDAACP+RFEDSK+AL K
Sbjct:    61 GRIEVSNAKIVFWDLGGQPGLRSIWEKYYEEAHALIYLIDAACPTRFEDSKSALEK 116

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

DICTYBASE|DDB_G0283631 arfrp1 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 62/114 (54%), Positives = 90/114 (78%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
             M+SLF GLWKY+F+K E+ +LILG+D +GKTTLLE++K+ Y+ + GLPP +IVPTVGLNI
Sbjct:     1 MYSLFVGLWKYLFSKNEYFILILGLDNSGKTTLLEQIKTKYTKIPGLPPHKIVPTVGLNI 60

Query:    61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
              R +  + KL++WDLGGQ  LR+IW K++ + HA+++V+D++   RF +SK  L
Sbjct:    61 ARTQFQDIKLIYWDLGGQTQLRTIWNKFFSDVHAIIYVVDSSDKERFNESKDEL 114

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-050227-14 arfrp1 "ADP-ribosylation factor related protein 1" [Danio rerio (taxid:7955)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 60/117 (51%), Positives = 85/117 (72%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ +S N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQTKTRFSKNYKGMNLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             IG I+V  ++L+FWDLGGQ  L+S+W+KYY E+H V++VID+    R  +SK A  K
Sbjct:    61 IGTIDVGKARLMFWDLGGQEELQSLWDKYYAESHGVIYVIDSTDEERLGESKNAFEK 117

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q32LJ2 ARFRP1 "ADP-ribosylation factor-related protein 1" [Bos taurus (taxid:9913)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 59/117 (50%), Positives = 84/117 (71%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K
Sbjct:    61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEK 117

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0034067 "protein localization to Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E1C1J0 ARFRP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/117 (49%), Positives = 85/117 (72%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F + E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQRDEYCILILGLDNAGKTTFLEQTKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             IG I+V  ++L+FWDLGGQ  L+S+W+KYY E+H V++VID+    R  +SK A  K
Sbjct:    61 IGTIDVGKTRLMFWDLGGQEELQSLWDKYYAESHGVIYVIDSTDEERLSESKRAFEK 117

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0034067 "protein localization to Golgi apparatus" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

MGI|MGI:1923938 Arfrp1 "ADP-ribosylation factor related protein 1" [Mus musculus (taxid:10090)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/117 (49%), Positives = 84/117 (71%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K
Sbjct:    61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEK 117

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007369 "gastrulation" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

RGD|621683 Arfrp1 "ADP-ribosylation factor related protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/117 (49%), Positives = 84/117 (71%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K
Sbjct:    61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEK 117

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007369 "gastrulation" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

UNIPROTKB|Q13795 ARFRP1 "ADP-ribosylation factor-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/117 (49%), Positives = 84/117 (71%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K
Sbjct:    61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEK 117

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0034067 "protein localization to Golgi apparatus" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IMP

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

FB|FBgn0030088 CG7039 [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 58/117 (49%), Positives = 83/117 (70%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L +G +KY+  K ++ V+ILG+D AGKTT LE  K+ ++ N +GL P +I  TVGLN
Sbjct:     1 MYTLMHGFYKYMTQKDDYCVVILGLDNAGKTTYLEAAKTTFTRNYKGLNPSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             IG I+V   +L FWDLGGQ  L+S+W+KYY+E+H V++VID+    R E+SK    K
Sbjct:    61 IGTIDVQGVRLNFWDLGGQQELQSLWDKYYQESHGVIYVIDSNDRERMEESKAIFDK 117

GO:0003924 "GTPase activity" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9P4D5 ARFRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 58/117 (49%), Positives = 81/117 (69%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             I  +EV    L+FW+LGGQ  L+S+W+KYY E H V++VID+    R  +SK A  K
Sbjct:    61 IRTVEVGKGPLMFWELGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKRAFEK 117

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XII1001 hypothetical protein (204 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-56
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	8e-34
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-29
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-26
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	4e-26
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	5e-25
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	2e-24
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-23
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	5e-23
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	6e-22
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-21
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	4e-21
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-20
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-20
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	3e-20
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	3e-20
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-19
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-19
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	6e-19
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	4e-18
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	5e-16
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-14
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	5e-10
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-10
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-09
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-08
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-07
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	8e-07
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-06
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-06
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-06
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	5e-06
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-05
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	2e-05
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	7e-05
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	9e-05
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-04
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-04
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	7e-04
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	8e-04
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	0.002
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	0.003
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	0.003

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  173 bits (440), Expect = 1e-56
 Identities = 58/98 (59%), Positives = 75/98 (76%), Gaps = 1/98 (1%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
           VLILG+D AGKTT LE+ K+ +S N +GL P +I PTVGLNIG IEV  ++L+FWDLGGQ
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             LRS+W+KYY E+H V++VID+    RF +SK+A  K
Sbjct: 62  EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEK 99

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  114 bits (289), Expect = 8e-34
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 7/96 (7%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            +L+LG+D AGKTT+L KLK              +PT+G N+  +E  N K   WD+GGQ
Sbjct: 1   RILMLGLDGAGKTTILYKLK-------LGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQ 53

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
             +R +W+ YYE    ++FV+D++   R E++K  L
Sbjct: 54  DKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNEL 89

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  103 bits (259), Expect = 3e-29
 Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 13/101 (12%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFW 73
           E  +LILG+D AGKTT+L KLK             IV   PT+G N+  +   N K   W
Sbjct: 14  EMRILILGLDNAGKTTILYKLK----------LGEIVTTIPTIGFNVETVTYKNVKFTVW 63

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           D+GGQ  LR +W  Y+    AV+FV+D+A   R E++K  L
Sbjct: 64  DVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEEL 104

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 96.3 bits (240), Expect = 3e-26
 Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 7/104 (6%)

Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
            ++ E  +L+LG+D AGKTT+L++L S     E +    I PT G NI  ++    KL  
Sbjct: 11  SSRQEVRILLLGLDNAGKTTILKQLAS-----EDISH--ITPTQGFNIKNVQADGFKLNV 63

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L +
Sbjct: 64  WDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVE 107

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 95.9 bits (239), Expect = 4e-26
 Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 11/116 (9%)

Query: 3   SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEK--LKSVYSNVEGLPPDRIVPTVGLNI 60
            LF  LW   F + E+ V+I+G+D AGKTT+L +  L  V             PT+G N+
Sbjct: 1   LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS---------PTIGSNV 51

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             I   N + + WD+GGQ  LRS W  YY    AV+ VID+    R   +K  L K
Sbjct: 52  EEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYK 107

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 93.4 bits (232), Expect = 5e-25
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 11/114 (9%)

Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
            +K +F K E  +L++G+D AGKTT+L KLK   V + +         PT+G N+  +E 
Sbjct: 8   AFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTI---------PTIGFNVETVEY 58

Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
            N K   WD+GGQ  LR +W  YY+  + ++FV+D+    R  D++  L +   
Sbjct: 59  KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLS 112

Length = 182

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 91.2 bits (227), Expect = 2e-24
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 7/100 (7%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G     I PT+G NI  +E +  KL  WD+G
Sbjct: 14  EMRILMLGLDNAGKTTILKKFN-------GEDISTISPTLGFNIKTLEYNGYKLNIWDVG 66

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           GQ  LRS W  Y+E   A+++V+D++  +R ED K  L K
Sbjct: 67  GQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQK 106

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 90.0 bits (224), Expect = 1e-23
 Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 14/118 (11%)

Query: 1   MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTV 56
           +F  FY +   +   K E  ++ LG+D AGKTTLL  LK           DR+   VPT+
Sbjct: 2   IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKD----------DRLAQHVPTL 51

Query: 57  GLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
                 + + N K   +DLGG    R +W+ Y+ E   +VF++DAA P RF++SK  L
Sbjct: 52  HPTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEEL 109

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 87.5 bits (217), Expect = 5e-23
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
           +F   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K  
Sbjct: 4   LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFN 56

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121
            WD+GGQ  +R +W  YY     ++FV+D+A   R ++++  L +    R
Sbjct: 57  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDR 106

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 84.7 bits (210), Expect = 6e-22
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 6/93 (6%)

Query: 22  ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81
           ++G+  +GKTTL+  + S          D I PTVG N+ ++   N  +  WDLGGQP  
Sbjct: 4   LVGLQNSGKTTLVNVIAS-----GQFSEDTI-PTVGFNMRKVTKGNVTIKVWDLGGQPRF 57

Query: 82  RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           RS+WE+Y    +A+V+V+DAA   + E +K  L
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNEL 90

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 84.2 bits (208), Expect = 1e-21
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 18/122 (14%)

Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK---SVYSNVEGLPPDRIVPTVGLNIGRIE 64
           L+  +F   E  +L++G+D AGKTT+L KLK   SV +          +PT+G N+  + 
Sbjct: 4   LFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTT----------IPTIGFNVETVT 53

Query: 65  VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICK 124
             N     WD+GGQ  +R +W  YY     ++FV+D+    R ++++  L      R+  
Sbjct: 54  YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREEL-----HRMLN 108

Query: 125 ER 126
           E 
Sbjct: 109 ED 110

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 82.5 bits (204), Expect = 4e-21
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
           ++L+LG+D +GKTT++ +LK             IVPTVG N+   +  N     +D+ GQ
Sbjct: 1   NILVLGLDNSGKTTIINQLKP-----SNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQ 55

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
              R +WE YY+    ++FVID++   R   +K  L
Sbjct: 56  GKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDEL 91

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 80.9 bits (200), Expect = 2e-20
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 8/97 (8%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGG 77
            VL+LG+D AGK+TLL KLK              +PTVG N+  +++  +  L  WD+GG
Sbjct: 1   QVLLLGLDSAGKSTLLYKLK-------HAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGG 53

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           Q  +R++W+ Y E    +V+V+D++  +R ++S+  L
Sbjct: 54  QEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKEL 90

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 81.4 bits (201), Expect = 2e-20
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 14/105 (13%)

Query: 18  FHVLILGIDKAGKTTLLEKLK-SVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLV--- 71
            H+++LG+D AGKTT+L +LK + + N         VPT G N  +I+VS  N+K V   
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNT--------VPTKGFNTEKIKVSLGNAKGVTFH 55

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           FWD+GGQ  LR +W+ Y      +VFV+D+    R E++KT L K
Sbjct: 56  FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHK 100

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 80.6 bits (199), Expect = 3e-20
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           +L+LG+D AGKT+LL  L S          + +VPT G N   I   ++ +   ++GG  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSS------ERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQ 55

Query: 80  GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
            LR  W++Y   +  ++FV+D+A   R   ++  L +
Sbjct: 56  NLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQ 92

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 80.8 bits (199), Expect = 3e-20
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 11/116 (9%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
           M   F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G 
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGF 51

Query: 59  NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L
Sbjct: 52  NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 107

Length = 181

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 79.0 bits (195), Expect = 1e-19
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 11/97 (11%)

Query: 20  VLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           +LILG+D AGKTT+L +L+   V + +         PT+G N+  +   N K   WDLGG
Sbjct: 2   ILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWDLGG 52

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           Q  +R  W  YY    A+++V+D+    R   SK+ L
Sbjct: 53  QTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSEL 89

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 78.9 bits (194), Expect = 1e-19
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 7/99 (7%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           V+ LG+D AGKTT+L KLK      E + P   +PT+G N+  +E  N K   WD+GG+ 
Sbjct: 2   VVTLGLDGAGKTTILFKLK----QDEFMQP---IPTIGFNVETVEYKNLKFTIWDVGGKH 54

Query: 80  GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
            LR +W+ YY    AVVFVID++   R  ++ + L K  
Sbjct: 55  KLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLL 93

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 77.1 bits (190), Expect = 6e-19
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 11/99 (11%)

Query: 20  VLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GG
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGG 53

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           Q  +R +W  Y++    ++FV+D+    R  +++  L +
Sbjct: 54  QDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQR 92

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 74.7 bits (184), Expect = 4e-18
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 7/95 (7%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           +L +G+D AGKTTL+  L       +G  P ++ PTVG    ++ +   ++  +DLGG  
Sbjct: 2   LLTVGLDNAGKTTLVSAL-------QGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGA 54

Query: 80  GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
             R IW  YY EAH +VFV+D++   R ++ K  L
Sbjct: 55  NFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEIL 89

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 70.0 bits (171), Expect = 5e-16
 Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 24/128 (18%)

Query: 2   FSLFY------GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-- 53
           F  FY      GLW          +L LG+D AGKTTLL  LK+          DR+   
Sbjct: 1   FDWFYDILASLGLWN-----KHAKILFLGLDNAGKTTLLHMLKN----------DRLAQH 45

Query: 54  -PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
            PT       + + N K   +DLGG    R +W+ Y+ E + +V+++DA    RF +SK 
Sbjct: 46  QPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKR 105

Query: 113 ALGKFFGM 120
            L      
Sbjct: 106 ELDALLSD 113

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 66.1 bits (161), Expect = 3e-14
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
               EF +++LG    GKTTLL +L       EG PP          I      N KL  
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVG-DEFPEGYPPTIGNLDPAKTI-EPYRRNIKLQL 58

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           WD  GQ   RS+  +YY  A+ ++ V D+      ++  
Sbjct: 59  WDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELT 97

Length = 219

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
           F ++++G    GKT L+ +        +GL P     T+G++  I  +E+   K  L  W
Sbjct: 8   FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           D  GQ   RSI + YY  A+A++   D  C   F 
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFR 96

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 53.6 bits (129), Expect = 7e-10
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
           F ++++G    GKT L       Y    G  P+R   T+G++       I+    K+  W
Sbjct: 3   FKIIVIGDSNVGKTCL------TYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLW 56

Query: 74  DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFED 109
           D  GQ   R S+ + YY   HAVVFV D    + F  
Sbjct: 57  DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHS 93

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 21  LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS--KLVFWDLGGQ 78
           +++G    GK++LL  L  +   V G   D    T   ++   E+     KLV  D  G 
Sbjct: 1   VVVGRGGVGKSSLLNAL--LGGEV-GEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGL 57

Query: 79  -----PGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
                 G   +       A  ++ V+D+      ED
Sbjct: 58  DEFGGLGREELARLLLRGADLILLVVDSTDRESEED 93

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVY-SNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVF- 72
           E  ++I+G    GK+TLL +L     S  E        P    N     IE       F 
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEY------KPGTTRNYVTTVIEEDGKTYKFN 54

Query: 73  -WDLGGQPGLRSIWEKYYEEAHAVVFVID 100
             D  GQ    +I   YY    + + V D
Sbjct: 55  LLDTAGQEDYDAIRRLYYRAVESSLRVFD 83

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            V+++G   +GK++LL +L  V       P +    T+ ++   ++     L  WD GG+
Sbjct: 1   KVVVIGDKGSGKSSLLSQL--VGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGR 58

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121
             L+     + + A A++ V D        +    +     +R
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLR 101

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLKS-VYSNVEG--LPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F ++++G    GKT ++++ KS  +S  +G  +  D  + T+ +   R+     KL  WD
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRV-----KLQIWD 58

Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
             GQ   R+I + YY  A+  +   D    S FE
Sbjct: 59  TAGQERFRTITQSYYRSANGAIIAYDITRRSSFE 92

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK++LL    S  S+VE L      PT+G++  I ++ V     KL  W
Sbjct: 15  FKILLIGDSGVGKSSLLVSFIS--SSVEDL-----APTIGVDFKIKQLTVGGKRLKLTIW 67

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           D  GQ   R++   YY  A  ++ V D      F +     GK
Sbjct: 68  DTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGK 110

Length = 211

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
           F V+++G    GKT LL + K              + TVG+      + V     KL  W
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKD-----GAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIW 55

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG 115
           D  GQ   RS+   YY +AHA++ + D    S F++ +  L 
Sbjct: 56  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLT 97

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNS--KLVFW 73
           F ++++G    GKT+LL +       V+    +    T+G++     IEV     KL  W
Sbjct: 1   FKIVLIGDSGVGKTSLLLRF------VDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIW 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           D  GQ   RSI   YY  AH  + V D      FE+
Sbjct: 55  DTAGQERFRSITSSYYRGAHGAILVYDVTNRESFEN 90

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
             +L++G    GK++LL          +    + +  T+G++  +  + V     KL  W
Sbjct: 1   LKILLIGDSGVGKSSLL------LRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIW 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           D  GQ   R++   YY  A  V+ V D      F+
Sbjct: 55  DTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFD 89

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 15/103 (14%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP----------TVGLNIGRIEV-SNS 68
           ++++G   AGKTT +  L    S+   +  +              TV ++ G IE+  ++
Sbjct: 13  IVVIGPVGAGKTTFVRAL----SDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDT 68

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
            +  +   GQ   + +WE     A   + ++D++ P  F   +
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE 111

Length = 187

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 19  HVLILGIDKAGKTTLLEKL--KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
            VL+LG   +GKT L  KL    V S V  + P+  V +   N  +      KL   D+ 
Sbjct: 2   TVLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPN--VASFYSNSSK----GKKLTLVDVP 55

Query: 77  GQPGLRSIWEKYYEEAH-AVVFVIDAA 102
           G   LR    +Y + +  A+VFV+D+A
Sbjct: 56  GHEKLRDKLLEYLKASLKAIVFVVDSA 82

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLK-SVYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +LI+G    GK++LL +   + +S   +  +  D  + TV +N  R+     KL  WD
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERV-----KLQIWD 61

Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
             GQ   R+I   YY   H V+ V D      F + K
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVK 98

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNS--KLVFW 73
           F ++++G    GK++LL +        +G   ++   T+G++     IEV     KL  W
Sbjct: 1   FKIILIGDSGVGKSSLLSRF------TDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIW 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           D  GQ   RSI   YY  A   + V D      FE
Sbjct: 55  DTAGQERFRSITSSYYRGAVGALLVYDITNRESFE 89

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
           F  LI+G    GK+ LL +       +E         T+G+  G     +   + KL  W
Sbjct: 1   FKFLIIGSAGTGKSCLLHQF------IENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIW 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           D  GQ   RS+   YY  A   + V D      F  
Sbjct: 55  DTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNA 90

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GR-IEVSNS---KLV 71
           +F ++++G    GK++LL++        EG   +   PTVG++   R IE+      KL 
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRF------TEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQ 55

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
            WD  GQ   RSI   YY  +  V+ V D
Sbjct: 56  LWDTAGQERFRSITRSYYRNSVGVLLVFD 84

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        E       + T+G++  I  IE+     KL  W
Sbjct: 4   FKLLLIGDSGVGKSCLLLRF------SEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIW 57

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
           D  GQ   R+I   YY  A  ++ V D      FE+ K 
Sbjct: 58  DTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKN 96

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 53  VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99
           V T G+   + +    K   +D+GGQ   R  W   +E+  A++FV+
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVV 199

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 18  FHVLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVF 72
           F +L++G    GK+ LL +     Y+       +  + T+G++  I  IE+     KL  
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYT-------ESYISTIGVDFKIRTIELDGKTVKLQI 55

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           WD  GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 56  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK 94

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDL 75
           +++LG    GK+ L+E+       ++G  P + + T  L + +     E     + FWD 
Sbjct: 3   IILLGDSAVGKSKLVERFL-----MDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 76  GGQPGLRSIWEKYYEEAHAVVFVID 100
            GQ   +++   YY +AHA + V D
Sbjct: 57  AGQERFQTMHASYYHKAHACILVFD 81

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 20  VLILGIDKAGKTTLLEKL---KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           V+I+G    GKT+L+E+        +    +  D  + TV L   +I     +L  WD  
Sbjct: 3   VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-----RLQIWDTA 57

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           GQ    SI   YY  A  ++ V D      F+D
Sbjct: 58  GQERFNSITSAYYRSAKGIILVYDITKKETFDD 90

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.95
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.95
PLN00223	181	ADP-ribosylation factor; Provisional	99.94
PTZ00133	182	ADP-ribosylation factor; Provisional	99.94
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.94
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.93
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.93
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.92
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.92
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.91
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.91
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.91
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.91
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.91
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.9
KOG0394	210	consensus Ras-related GTPase [General function pre	99.9
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.9
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.9
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.9
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.9
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.9
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.9
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.9
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.9
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.9
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.9
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.9
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.9
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.9
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.9
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.9
PTZ00369	189	Ras-like protein; Provisional	99.9
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.89
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.89
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.89
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.89
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.89
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.89
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.89
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.89
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.89
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.89
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.88
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.88
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.88
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.88
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.88
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.88
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.88
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.88
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.88
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.88
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.88
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.87
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.87
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.87
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.87
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.87
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.87
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.87
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.87
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.87
PLN00023	334	GTP-binding protein; Provisional	99.87
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.87
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.87
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.87
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.87
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.87
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.87
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.87
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.87
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.87
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.87
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.86
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.86
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.86
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.86
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.86
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.86
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.86
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.86
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.86
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.86
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.86
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.86
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.85
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.85
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.85
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.85
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.85
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.85
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.85
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.85
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.85
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.85
PLN03110	216	Rab GTPase; Provisional	99.85
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.85
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.84
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.84
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.84
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.84
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.84
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.83
PLN03108	210	Rab family protein; Provisional	99.83
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.83
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.83
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.83
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.82
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.82
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.82
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.82
PLN03118	211	Rab family protein; Provisional	99.82
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.82
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.82
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.82
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.81
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.81
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.81
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.81
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.81
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.8
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.8
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.79
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.79
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.78
COG1100	219	GTPase SAR1 and related small G proteins [General	99.76
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.76
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.76
KOG0395	196	consensus Ras-related GTPase [General function pre	99.76
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.75
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.75
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.74
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.74
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.73
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.73
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.69
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.68
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.67
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.66
PRK12299	335	obgE GTPase CgtA; Reviewed	99.66
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.64
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.63
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.62
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.62
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.62
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.61
KOG1673	205	consensus Ras GTPases [General function prediction	99.6
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.6
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.6
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.59
PRK15494	339	era GTPase Era; Provisional	99.59
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.58
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.58
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.57
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.56
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.55
COG2229	187	Predicted GTPase [General function prediction only	99.55
PRK03003	472	GTP-binding protein Der; Reviewed	99.55
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.54
PRK00093	435	GTP-binding protein Der; Reviewed	99.53
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.52
cd00881	189	GTP_translation_factor GTP translation factor fami	99.52
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.52
PRK12296	500	obgE GTPase CgtA; Reviewed	99.52
PRK12297	424	obgE GTPase CgtA; Reviewed	99.52
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.52
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.52
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.51
PRK04213	201	GTP-binding protein; Provisional	99.5
PRK11058	426	GTPase HflX; Provisional	99.49
PRK03003	472	GTP-binding protein Der; Reviewed	99.49
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.49
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.48
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.48
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.47
PRK12298	390	obgE GTPase CgtA; Reviewed	99.47
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.47
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.46
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.45
PTZ00099	176	rab6; Provisional	99.44
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.44
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.43
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.43
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.41
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.41
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.41
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.41
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.4
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.4
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.4
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.4
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.4
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.39
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.39
CHL00189	742	infB translation initiation factor 2; Provisional	99.39
PRK05306	787	infB translation initiation factor IF-2; Validated	99.37
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.37
PRK00089	292	era GTPase Era; Reviewed	99.37
PRK12317	425	elongation factor 1-alpha; Reviewed	99.36
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.35
COG1163	365	DRG Predicted GTPase [General function prediction	99.35
COG0486	454	ThdF Predicted GTPase [General function prediction	99.35
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.35
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.34
PRK13351	687	elongation factor G; Reviewed	99.33
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.33
PRK04004	586	translation initiation factor IF-2; Validated	99.33
PRK00093	435	GTP-binding protein Der; Reviewed	99.33
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.32
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.32
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.31
COG1160	444	Predicted GTPases [General function prediction onl	99.31
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.31
PRK09602	396	translation-associated GTPase; Reviewed	99.31
PRK10218	607	GTP-binding protein; Provisional	99.31
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.31
COG1159	298	Era GTPase [General function prediction only]	99.31
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.3
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.3
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.3
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.3
KOG0090	238	consensus Signal recognition particle receptor, be	99.3
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.3
PRK05433	600	GTP-binding protein LepA; Provisional	99.29
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.29
COG3596	296	Predicted GTPase [General function prediction only	99.27
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.26
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.25
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.25
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.24
PTZ00258	390	GTP-binding protein; Provisional	99.23
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.23
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.23
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.22
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.21
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.21
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.2
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.2
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.19
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.19
COG1084	346	Predicted GTPase [General function prediction only	99.18
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.17
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.17
PRK09601	364	GTP-binding protein YchF; Reviewed	99.17
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.13
COG2262	411	HflX GTPases [General function prediction only]	99.13
PRK12735	396	elongation factor Tu; Reviewed	99.11
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.11
PRK12739	691	elongation factor G; Reviewed	99.09
PRK12736	394	elongation factor Tu; Reviewed	99.09
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.08
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.08
CHL00071	409	tufA elongation factor Tu	99.06
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.06
COG1160	444	Predicted GTPases [General function prediction onl	99.06
PLN03126	478	Elongation factor Tu; Provisional	99.05
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.05
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.04
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.03
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.03
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.02
PRK00049	396	elongation factor Tu; Reviewed	99.02
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.02
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.99
PTZ00141	446	elongation factor 1- alpha; Provisional	98.98
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.97
PLN03127	447	Elongation factor Tu; Provisional	98.97
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.97
COG0536	369	Obg Predicted GTPase [General function prediction	98.97
PRK00007	693	elongation factor G; Reviewed	98.96
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.94
PRK12740	668	elongation factor G; Reviewed	98.94
PLN00043	447	elongation factor 1-alpha; Provisional	98.93
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.93
COG0218	200	Predicted GTPase [General function prediction only	98.92
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.92
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.87
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.84
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.82
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.81
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.79
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.78
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.77
PRK07560	731	elongation factor EF-2; Reviewed	98.76
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.72
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.71
PTZ00416	836	elongation factor 2; Provisional	98.7
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.66
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.64
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.62
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.58
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.57
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.56
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.55
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.54
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.51
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.49
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.49
KOG0410	410	consensus Predicted GTP binding protein [General f	98.45
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.45
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.44
COG1161	322	Predicted GTPases [General function prediction onl	98.41
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.4
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.38
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.34
PRK12288	347	GTPase RsgA; Reviewed	98.3
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.28
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.26
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.26
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.24
PRK12289	352	GTPase RsgA; Reviewed	98.22
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.2
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.2
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.19
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.19
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.18
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.18
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.14
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.14
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.14
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.13
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.13
PRK14845	1049	translation initiation factor IF-2; Provisional	98.13
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.13
KOG1145	683	consensus Mitochondrial translation initiation fac	98.11
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.1
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.09
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.06
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.06
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.06
PRK13796	365	GTPase YqeH; Provisional	98.03
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.02
PRK00098	298	GTPase RsgA; Reviewed	97.94
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.88
PRK13768	253	GTPase; Provisional	97.88
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.87
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.86
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.85
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.85
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.84
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.84
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	97.82
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.81
PRK08118	167	topology modulation protein; Reviewed	97.81
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.81
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	97.8
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.8
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.79
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.78
COG1162	301	Predicted GTPases [General function prediction onl	97.76
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.76
PRK07261	171	topology modulation protein; Provisional	97.75
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.72
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.72
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.72
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.72
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.71
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.71
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.7
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.69
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.69
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.68
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.68
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.67
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.67
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.66
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.65
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.65
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.65
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.65
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.65
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.64
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.64
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	97.64
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.64
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.64
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.64
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.63
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.63
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.63
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.63
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.63
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.63
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.62
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.62
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.62
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.62
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.62
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.62
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.61
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.61
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.6
PRK10908	222	cell division protein FtsE; Provisional	97.6
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.6
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.6
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.6
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	97.6
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.59
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.59
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.58
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.58
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.58
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.57
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.57
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.57
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.57
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.57
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.57
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.57
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.56
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.56
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.56
COG4559	259	ABC-type hemin transport system, ATPase component	97.56
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.56
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.55
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.55
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	97.55
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.55
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.55
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.55
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.54
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.54
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	97.54
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.54
PRK06217	183	hypothetical protein; Validated	97.54
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.54
cd03246	173	ABCC_Protease_Secretion This family represents the	97.53
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.53
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.53
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.53
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.53
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.53
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.53
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.52
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	97.52
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	97.52
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.52
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	97.52
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.52
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	97.52
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	97.52
COG0411	250	LivG ABC-type branched-chain amino acid transport	97.51
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.51
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.51
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.51
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.51
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.51
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	97.51
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	97.5
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.5
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.5
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.5
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.49
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	97.49
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	97.49
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.49
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.49
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.49
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.49
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.48
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	97.47
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.47
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.47
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.47
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.47
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	97.47
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.47
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	97.47
PRK03839	180	putative kinase; Provisional	97.46
PRK13537	306	nodulation ABC transporter NodI; Provisional	97.46
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	97.46
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.46
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.46
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.46
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.45
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.45
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.45
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	97.45
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.45
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	97.45
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	97.45
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.45
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	97.45
PRK14530	215	adenylate kinase; Provisional	97.45
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.45
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.45
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.44
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.44
PRK13536	340	nodulation factor exporter subunit NodI; Provision	97.44
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	97.44
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.44
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	97.44
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.44
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.44
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	97.44
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.44
PF00004	132	AAA: ATPase family associated with various cellula	97.44
smart00382	148	AAA ATPases associated with a variety of cellular	97.44
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.43

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.9e-27  Score=153.44  Aligned_cols=100  Identities=28%  Similarity=0.519  Sum_probs=93.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+||+++|++|+|||+|+.||..      +.+++.+..|+|++.  .++++++  ..+++|||+|+++|+.+...|+++
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKD------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhcc------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            478999999999999999999999      999999999999885  5677777  789999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +|++|+|||+++.+||.++..|+.++....
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~  111 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYA  111 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhc
Confidence            999999999999999999999999997764

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.7e-28  Score=153.50  Aligned_cols=120  Identities=35%  Similarity=0.674  Sum_probs=112.1

Q ss_pred             ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus         1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      ||.+++.+|..++.+++.+|+++|..+|||||+++++..      ++.... .||+|++.+.+.+.+.++++||.+|+.+
T Consensus         1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~------~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k   73 (181)
T KOG0070|consen    1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKL------GEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEK   73 (181)
T ss_pred             CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeecc------CCcccC-CCccccceeEEEEcceEEEEEecCCCcc
Confidence            899999999999999999999999999999999999988      655545 8999999999999999999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++..|..|+++.+++|||+|.+|++++.++++.+..++++..+.+.|
T Consensus        74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~  120 (181)
T KOG0070|consen   74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAP  120 (181)
T ss_pred             cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCce
Confidence            99999999999999999999999999999999999999998765543

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=3e-26  Score=150.18  Aligned_cols=120  Identities=32%  Similarity=0.645  Sum_probs=104.8

Q ss_pred             ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus         1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      ||.+++.+|..+...+.+||+++|+++||||||++++..      +.+. .+.||.+.+...++..+..+.+||++|++.
T Consensus         1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~   73 (181)
T PLN00223          1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDK   73 (181)
T ss_pred             CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCc-cccCCcceeEEEEEECCEEEEEEECCCCHH
Confidence            888888887766667789999999999999999999987      5555 357888988877888889999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++.++..+++++|++|+|||++++++++++..++.+++.+...++.|
T Consensus        74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p  120 (181)
T PLN00223         74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV  120 (181)
T ss_pred             HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC
Confidence            99999999999999999999999999999999999988765554444

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=6e-26  Score=148.84  Aligned_cols=120  Identities=34%  Similarity=0.661  Sum_probs=104.4

Q ss_pred             ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus         1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      ||.+++.+++.+..++.+||+++|+++||||||++++..      +.+.. +.||.+.+...+...+..+.+||++|++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~------~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~   73 (182)
T PTZ00133          1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKL------GEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDK   73 (182)
T ss_pred             CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhc------CCccc-cCCccccceEEEEECCEEEEEEECCCCHh
Confidence            888888888877777889999999999999999999987      65554 56888887777778889999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++.++..+++++|++|+|||++++++++++..++.+++......+.|
T Consensus        74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p  120 (182)
T PTZ00133         74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV  120 (182)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC
Confidence            99999999999999999999999999999999999988765444444

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.5e-26  Score=146.96  Aligned_cols=103  Identities=21%  Similarity=0.406  Sum_probs=94.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      +.+|++++|+.++|||||+++++.      +.|...|.+|+|++.  ..+.+.+  +++++|||.|+++|+.+.+.|+++
T Consensus        21 k~~KlVflGdqsVGKTslItRf~y------d~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd   94 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMY------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   94 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHH------hhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence            569999999999999999999999      999999999999875  4556666  889999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~  124 (128)
                      +.++|+|||+++..||++...|++++.+++...
T Consensus        95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~  127 (221)
T KOG0094|consen   95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSD  127 (221)
T ss_pred             CeEEEEEEeccccchHHHHHHHHHHHHhccCCC
Confidence            999999999999999999999999999887543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.3e-25  Score=144.38  Aligned_cols=102  Identities=27%  Similarity=0.440  Sum_probs=93.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+|++|+|+.++|||||+-|+..      ++|++...+|+|..  ...+.+++  ..+.||||+|+++|+.+-+.|+|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk------~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyR   76 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVK------DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYR   76 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhh------CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceec
Confidence            4689999999999999999999999      99998889999965  45666777  78889999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +++++|+|||+++.+||..++.|+.++.+...
T Consensus        77 gA~AAivvYDit~~~SF~~aK~WvkeL~~~~~  108 (200)
T KOG0092|consen   77 GANAAIVVYDITDEESFEKAKNWVKELQRQAS  108 (200)
T ss_pred             CCcEEEEEEecccHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999987654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.93  E-value=1.1e-24  Score=141.89  Aligned_cols=116  Identities=32%  Similarity=0.672  Sum_probs=97.2

Q ss_pred             ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus         1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      ||.+....+.    .+.+||+++|++++|||||++++..      +.+. .+.||.+.+...+...+..+.+||++|++.
T Consensus         1 ~~~~~~~~~~----~~~~ki~l~G~~~~GKTsL~~~~~~------~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~   69 (175)
T smart00177        1 MGKLFSKLFG----NKEMRILMVGLDAAGKTTILYKLKL------GESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDK   69 (175)
T ss_pred             CchhhhhhcC----CCccEEEEEcCCCCCHHHHHHHHhc------CCCC-CcCCccccceEEEEECCEEEEEEECCCChh
Confidence            6666444433    4679999999999999999999987      5553 356888888777777789999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +..++..+++++|++++|||++++++++++.+|+.+++++....+.|
T Consensus        70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p  116 (175)
T smart00177       70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV  116 (175)
T ss_pred             hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc
Confidence            99999999999999999999999999999999999998765444443

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1e-24  Score=134.12  Aligned_cols=120  Identities=36%  Similarity=0.666  Sum_probs=111.2

Q ss_pred             ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus         1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      ||..++.++.+++-.++++|+.+|..++||||++..+..      ++. ....||.|++++.+++.+..+.+||.+|+++
T Consensus         1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl------~~~-~~~ipTvGFnvetVtykN~kfNvwdvGGqd~   73 (180)
T KOG0071|consen    1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKL------GQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDK   73 (180)
T ss_pred             CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhc------CCC-cccccccceeEEEEEeeeeEEeeeeccCchh
Confidence            888999999999999999999999999999999999987      333 3567999999999999999999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      .+.+|..|+....++|||+|.++++..++++..+..+++++.+.+.+
T Consensus        74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~  120 (180)
T KOG0071|consen   74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAI  120 (180)
T ss_pred             hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcce
Confidence            99999999999999999999999999999999999999998877654

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.92  E-value=1.1e-24  Score=142.03  Aligned_cols=115  Identities=36%  Similarity=0.709  Sum_probs=102.6

Q ss_pred             HHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075            6 YGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (128)
Q Consensus         6 ~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   84 (128)
                      +++++.+.. ++.+||+++|+++|||||+++++..      +... ...||.|.+...+.+.+..+.+||++|+..++..
T Consensus         2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~------~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~   74 (175)
T PF00025_consen    2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKN------GEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPL   74 (175)
T ss_dssp             HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHS------SSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGG
T ss_pred             HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhh------cccc-ccCcccccccceeeeCcEEEEEEecccccccccc
Confidence            456665554 8999999999999999999999987      4332 4779999999999999999999999999999999


Q ss_pred             HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      |+.|+.+++++|||+|.++++.+.++++.+.+++.+....+.|
T Consensus        75 w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p  117 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP  117 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE
T ss_pred             ceeeccccceeEEEEecccceeecccccchhhhcchhhcccce
Confidence            9999999999999999999999999999999999988776665

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=4.3e-24  Score=134.16  Aligned_cols=99  Identities=27%  Similarity=0.467  Sum_probs=89.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+||+++|.+|+|||||+.+|..      +.+.+....|+|++  ...+.+++  .++.+||++|+++|+.+.+.|++.
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRg   83 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVS------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRG   83 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHh------cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhcc
Confidence            368999999999999999999998      88888888889987  46677777  789999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +.++|+|||++.+++|.++..|+.++-..
T Consensus        84 aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y  112 (209)
T KOG0080|consen   84 AQGIILVYDVTSRDTFVKLDIWLKELDLY  112 (209)
T ss_pred             CceeEEEEEccchhhHHhHHHHHHHHHhh
Confidence            99999999999999999999999997543

>cd04149 Arf6 Arf6 subfamily

Probab=99.91  E-value=7.7e-24  Score=137.18  Aligned_cols=107  Identities=36%  Similarity=0.712  Sum_probs=92.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .++.+||+++|+++||||||++++..      +.+. .+.||.+.+...+...+..+.+||++|+++++.++..+++++|
T Consensus         6 ~~~~~kv~i~G~~~~GKTsli~~l~~------~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~   78 (168)
T cd04149           6 GNKEMRILMLGLDAAGKTTILYKLKL------GQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ   78 (168)
T ss_pred             CCCccEEEEECcCCCCHHHHHHHHcc------CCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCC
Confidence            35789999999999999999999987      5554 3567888877777777799999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|||++++.+++++..|+.+++.....++.|
T Consensus        79 ~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p  112 (168)
T cd04149          79 GLIFVVDSADRDRIDEARQELHRIINDREMRDAL  112 (168)
T ss_pred             EEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc
Confidence            9999999999999999999999998765444444

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.91  E-value=2.1e-23  Score=131.19  Aligned_cols=105  Identities=34%  Similarity=0.652  Sum_probs=97.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +.++++|+++|..||||||++++|..       +..+...||.|+++.+..++++++.+||++|+..++..|+.||..+|
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~-------~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestd   85 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLG-------EDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTD   85 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcC-------CCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccC
Confidence            45799999999999999999999985       44678899999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKE  125 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~  125 (128)
                      ++|+|+|.+|+.++++-...+.+++.+.+...
T Consensus        86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG  117 (185)
T KOG0073|consen   86 GLIWVVDSSDRMRMQECKQELTELLVEERLAG  117 (185)
T ss_pred             eEEEEEECchHHHHHHHHHHHHHHHhhhhhcC
Confidence            99999999999999999999999988776654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.91  E-value=2.5e-23  Score=133.67  Aligned_cols=103  Identities=31%  Similarity=0.686  Sum_probs=89.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~   97 (128)
                      +||+++|+++||||||++++..      +.+. .+.||.+.+...+......+.+||++|++++...+..+++++|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~   73 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            4899999999999999999987      6665 46788888777777778999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           98 VIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        98 v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      |||++++++++++.+|+.++.......+.|
T Consensus        74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p  103 (159)
T cd04150          74 VVDSNDRERIGEAREELQRMLNEDELRDAV  103 (159)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcHHhcCCC
Confidence            999999999999999999988665444443

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.91  E-value=3.2e-23  Score=135.98  Aligned_cols=101  Identities=25%  Similarity=0.445  Sum_probs=89.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ++..+||+++|++++|||||++++..      +.++..+.||++..+ ..+.+++  ..+.+||++|++.|..++..+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~------~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~   75 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP   75 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHh------CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcC
Confidence            46789999999999999999999999      888888889988654 3455665  67999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHH-HHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDS-KTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~~~  120 (128)
                      ++|++++|||+++++||+++ ..|+.++...
T Consensus        76 ~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~  106 (182)
T cd04172          76 DSDAVLICFDISRPETLDSVLKKWKGEIQEF  106 (182)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997 7899887653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.7e-24  Score=134.90  Aligned_cols=127  Identities=55%  Similarity=0.933  Sum_probs=114.3

Q ss_pred             ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccC-CCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSN-VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (128)
Q Consensus         1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   79 (128)
                      |+++++++|+.++++..+.++++|+.++||||++.+....+.. ..+..+....+|.|.++.++.+.+..+.+||.+|++
T Consensus         1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe   80 (197)
T KOG0076|consen    1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE   80 (197)
T ss_pred             ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence            9999999999999999999999999999999999998875553 234556678899999999999999999999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ..+++|..|+..||++++++|.+|++.|++.+..++.+..++...+.|
T Consensus        81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p  128 (197)
T KOG0076|consen   81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAP  128 (197)
T ss_pred             HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999999999999888877665544

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.90  E-value=6.9e-23  Score=133.31  Aligned_cols=116  Identities=36%  Similarity=0.676  Sum_probs=98.6

Q ss_pred             hHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075            5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (128)
Q Consensus         5 ~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   84 (128)
                      +..++..++.++.+||+++|++++|||||++++..      +.+.. +.+|.+.+...+.+.+..+.+||+||+..+...
T Consensus         3 ~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   75 (174)
T cd04153           3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLL------GEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSS   75 (174)
T ss_pred             hhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHH
Confidence            45666766666789999999999999999999988      55554 467888777778888899999999999999999


Q ss_pred             HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +..+++.+|++++|+|+++++++..+..++.++++.....+.|
T Consensus        76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p  118 (174)
T cd04153          76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV  118 (174)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC
Confidence            9999999999999999999999999999999988765444444

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.90  E-value=3.7e-24  Score=136.95  Aligned_cols=105  Identities=26%  Similarity=0.418  Sum_probs=95.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      ++..+||+++|++|+|||||++++.+      .+|.+.+..|+|..  .+.+.+++  +.+++|||+|+++|.++...++
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~------~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFY   79 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVN------KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFY   79 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHH------HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccccee
Confidence            46779999999999999999999999      89999999999976  46677777  7799999999999999999999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~  124 (128)
                      +++|+++++||++++.||+.+..|-++++......
T Consensus        80 RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~  114 (210)
T KOG0394|consen   80 RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQ  114 (210)
T ss_pred             cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999998876644

>cd04120 Rab12 Rab12 subfamily

Probab=99.90  E-value=6.3e-23  Score=136.51  Aligned_cols=96  Identities=25%  Similarity=0.451  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +.|+++|++|||||||++++..      +.+...+.+|++...  ..+.+++  ..+.+||++|+++|+.++..|++++|
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~------~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad   74 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTD------DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK   74 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHh------CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCC
Confidence            4689999999999999999998      888888888887553  4667776  78899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++++|||++++++|+++..|+..+..
T Consensus        75 ~iIlVfDvtd~~Sf~~l~~w~~~i~~  100 (202)
T cd04120          75 GIILVYDITKKETFDDLPKWMKMIDK  100 (202)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.90  E-value=1.2e-23  Score=130.63  Aligned_cols=99  Identities=28%  Similarity=0.507  Sum_probs=90.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .++.+++|++|+|||+|+-+|..      +.|...|..|+|++  +.++++++  +.++|||+.|++.|+.+...|++..
T Consensus         8 LfkllIigDsgVGKssLl~rF~d------dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt   81 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFAD------DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT   81 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhh------cccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence            35678999999999999999999      88889999999987  46677777  7899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++++.|||+++.+||.+.+.|++++.+..
T Consensus        82 hgv~vVYDVTn~ESF~Nv~rWLeei~~nc  110 (198)
T KOG0079|consen   82 HGVIVVYDVTNGESFNNVKRWLEEIRNNC  110 (198)
T ss_pred             ceEEEEEECcchhhhHhHHHHHHHHHhcC
Confidence            99999999999999999999999998764

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.90  E-value=1.2e-22  Score=132.05  Aligned_cols=98  Identities=17%  Similarity=0.289  Sum_probs=86.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .+||+++|++|+|||||++++..      +.++..+.+|.+..+ ..+.+++  ..+.+||++|++.+..++..+++.+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d   75 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFIS------HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGE   75 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHh------CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCC
Confidence            57999999999999999999999      888878888887554 3566666  67899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++|||++++++|+.+.+|+..+.+.
T Consensus        76 ~~ilv~d~~~~~Sf~~~~~~~~~i~~~  102 (172)
T cd04141          76 GFIICYSVTDRHSFQEASEFKKLITRV  102 (172)
T ss_pred             EEEEEEECCchhHHHHHHHHHHHHHHh
Confidence            999999999999999999887776553

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04128 Spg1 Spg1p

Probab=99.90  E-value=1e-22  Score=133.56  Aligned_cols=97  Identities=26%  Similarity=0.425  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +|++++|++++|||||++++..      +.+.+.+.+|.|.+.  ..+.+++  ..+.+||++|++.+..++..+++++|
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~------~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~   74 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVE------GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAV   74 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCC
Confidence            5899999999999999999999      888888899998765  4566776  67899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++|||++++++|+++..|+.++...
T Consensus        75 ~iilv~D~t~~~s~~~i~~~~~~~~~~  101 (182)
T cd04128          75 AILFMFDLTRKSTLNSIKEWYRQARGF  101 (182)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998663

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6.8e-23  Score=133.80  Aligned_cols=101  Identities=27%  Similarity=0.451  Sum_probs=92.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+|++++|+++||||+++.++..      +.+...+..|+|+..  ..+++++  ..+++||+.|+++|+.+...|++.
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d------~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg   84 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSD------DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG   84 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhh------ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence            578999999999999999999999      888889999999874  6777777  679999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      |+++++|||++++.||+++..|++.+-.+..
T Consensus        85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~  115 (207)
T KOG0078|consen   85 AMGILLVYDITNEKSFENIRNWIKNIDEHAS  115 (207)
T ss_pred             cCeeEEEEEccchHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999876643

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.2e-23  Score=128.47  Aligned_cols=98  Identities=34%  Similarity=0.590  Sum_probs=91.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+.|+|||+|++++..      +.||.-...|+|+.  +.++++++  .++++||+.|+++|++....|++.+
T Consensus         7 lfkivlvgnagvgktclvrrftq------glfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa   80 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhc------cCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence            58999999999999999999999      99999999999976  57888887  7899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++++|||++...+|+-+.+|+.++-..
T Consensus        81 halilvydiscqpsfdclpewlreie~y  108 (213)
T KOG0095|consen   81 HALILVYDISCQPSFDCLPEWLREIEQY  108 (213)
T ss_pred             ceEEEEEecccCcchhhhHHHHHHHHHH
Confidence            9999999999999999999999998654

>cd01875 RhoG RhoG subfamily

Probab=99.90  E-value=1.1e-22  Score=134.35  Aligned_cols=97  Identities=23%  Similarity=0.360  Sum_probs=85.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .+||+++|+++||||||+.++..      +.+++.+.||++..+. .+.+++  ..+.+||++|+++|+.++..+++++|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~   76 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTT------NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTN   76 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh------CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCC
Confidence            58999999999999999999999      8888888999986543 344555  77999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           94 AVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      ++++|||+++++||+++. .|+.++..
T Consensus        77 ~~ilvydit~~~Sf~~~~~~w~~~i~~  103 (191)
T cd01875          77 VFIICFSIASPSSYENVRHKWHPEVCH  103 (191)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999997 58776654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04136 Rap_like Rap-like subfamily

Probab=99.90  E-value=1.4e-22  Score=129.89  Aligned_cols=105  Identities=21%  Similarity=0.356  Sum_probs=87.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .+||+++|++|||||||++++..      +.+...+.+|.+.. ...+.+++  ..+.+||++|++++..++..++++++
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   74 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQ   74 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCC
Confidence            37999999999999999999998      77766777777633 34556666  56889999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|||++++++|+++..|+.++.......+.|
T Consensus        75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  108 (163)
T cd04136          75 GFVLVYSITSQSSFNDLQDLREQILRVKDTENVP  108 (163)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999987654433333

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04131 Rnd Rnd subfamily

Probab=99.90  E-value=9.4e-23  Score=133.31  Aligned_cols=98  Identities=26%  Similarity=0.453  Sum_probs=86.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      ++||+++|++++|||||++++..      +.++..+.||.+..+ ..+.+++  ..+.+||++|++.|..+.+.+++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~   74 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAK------DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSD   74 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCC
Confidence            47999999999999999999999      888888889987654 3455666  77999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHH-HHHHHHHhcC
Q 033075           94 AVVFVIDAACPSRFEDS-KTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~-~~~l~~~~~~  120 (128)
                      ++++|||+++++||+++ ..|+.++...
T Consensus        75 ~~ilvfdit~~~Sf~~~~~~w~~~i~~~  102 (178)
T cd04131          75 AVLICFDISRPETLDSVLKKWRGEIQEF  102 (178)
T ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHHH
Confidence            99999999999999996 7899887654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04133 Rop_like Rop subfamily

Probab=99.90  E-value=9.4e-23  Score=133.08  Aligned_cols=97  Identities=23%  Similarity=0.325  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +|++++|++++|||||+.++..      +.+.+.+.+|++... ..+.+++  +++.+||++|+++|+.++..+++++++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~   75 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADV   75 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhc------CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcE
Confidence            6899999999999999999999      888888999998654 3455555  789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHH-HHHHHHHhcC
Q 033075           95 VVFVIDAACPSRFEDS-KTALGKFFGM  120 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~-~~~l~~~~~~  120 (128)
                      +++|||+++++||+++ ..|+.++...
T Consensus        76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~  102 (176)
T cd04133          76 FVLAFSLISRASYENVLKKWVPELRHY  102 (176)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998 6899988644

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.90  E-value=1.3e-22  Score=132.24  Aligned_cols=97  Identities=23%  Similarity=0.324  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +||+++|++++|||||++++..      +.+++.+.||++..+. .+.+++  +.+.+||++|++.+..++..+++++|+
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~------~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~   75 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTT------NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV   75 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCE
Confidence            6899999999999999999998      8888888899887654 556666  678899999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHH-HHHHHhcC
Q 033075           95 VVFVIDAACPSRFEDSKT-ALGKFFGM  120 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~-~l~~~~~~  120 (128)
                      +++|||++++++|+++.. |+.++...
T Consensus        76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~  102 (175)
T cd01874          76 FLVCFSVVSPSSFENVKEKWVPEITHH  102 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999974 88777543

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04121 Rab40 Rab40 subfamily

Probab=99.90  E-value=1.6e-22  Score=133.30  Aligned_cols=99  Identities=21%  Similarity=0.358  Sum_probs=87.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+||+++|+.+||||||++++..      +.+...+.++.+...  ..+.+++  ..+.+||++|++.|..++..++++
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~   78 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQD------GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRG   78 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence            568999999999999999999998      777667767766553  4566666  778999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +|++++|||++++++|+++..|+.++...
T Consensus        79 ad~illVfD~t~~~Sf~~~~~w~~~i~~~  107 (189)
T cd04121          79 AQGIILVYDITNRWSFDGIDRWIKEIDEH  107 (189)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.90  E-value=1.4e-22  Score=131.04  Aligned_cols=102  Identities=33%  Similarity=0.669  Sum_probs=90.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v   98 (128)
                      +|+++|+++||||||++++..      . +...+.+|.|.....+...+..+.+||++|++.++.++..+++++|++++|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~------~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V   73 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQG------E-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV   73 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhC------C-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence            479999999999999999986      3 556778999988778888889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           99 IDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ||+++++++++++.|+..+.......++|
T Consensus        74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~p  102 (167)
T cd04161          74 VDSSDDDRVQEVKEILRELLQHPRVSGKP  102 (167)
T ss_pred             EECCchhHHHHHHHHHHHHHcCccccCCc
Confidence            99999999999999999998775444444

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04176 Rap2 Rap2 subgroup

Probab=99.90  E-value=1.9e-22  Score=129.57  Aligned_cols=105  Identities=23%  Similarity=0.329  Sum_probs=87.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce-EEEEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL-NIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      ++||+++|++++|||||++++..      +.+.+.+.+|.+. ....+.+++  ..+.+||++|++++..++..+++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad   74 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVS------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ   74 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCC
Confidence            47999999999999999999998      7777777777652 234556666  56889999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|||++++++|+++..|+..+.+.....+.|
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  108 (163)
T cd04176          75 GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP  108 (163)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999887654333333

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04158 ARD1 ARD1 subfamily

Probab=99.90  E-value=1.6e-22  Score=131.03  Aligned_cols=102  Identities=37%  Similarity=0.695  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v   98 (128)
                      ||+++|+++||||||++++..      +.+. .+.+|.+.....++..+..+.+||+||+..+...+..+++.+|++++|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~------~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V   73 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQ------DEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV   73 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhc------CCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence            689999999999999999998      5554 367888888777888889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           99 IDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +|++++++++++..|+.++.+.....+.|
T Consensus        74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~p  102 (169)
T cd04158          74 VDSSHRDRVSEAHSELAKLLTEKELRDAL  102 (169)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcChhhCCCC
Confidence            99999999999999999998765444433

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PTZ00369 Ras-like protein; Provisional

Probab=99.90  E-value=2e-22  Score=132.72  Aligned_cols=101  Identities=18%  Similarity=0.289  Sum_probs=88.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ...+||+++|++++|||||++++..      +.+...+.+|.+..+ ..+.+++  ..+.+||++|++++..++..+++.
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~   76 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQ------NHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRT   76 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhc
Confidence            4579999999999999999999998      777777778877654 3445565  568899999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++++++|||++++++|+.+..|+.++.+..
T Consensus        77 ~d~iilv~D~s~~~s~~~~~~~~~~i~~~~  106 (189)
T PTZ00369         77 GQGFLCVYSITSRSSFEEIASFREQILRVK  106 (189)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999887654

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.89  E-value=1.4e-22  Score=134.68  Aligned_cols=97  Identities=19%  Similarity=0.297  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC-----C--eEEEEEeCCCCccchhhHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-----N--SKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-----~--~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      +||+++|++++|||||++++..      +.+...+.+|+|.+.  ..+.++     +  +.+.+||++|++.|..++..+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~------~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~   74 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICK------NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF   74 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHH
Confidence            5899999999999999999999      888888888988543  344553     2  679999999999999999999


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++|++++|||+++++||+++..|+.++.+.
T Consensus        75 yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~  106 (202)
T cd04102          75 YNQVNGIILVHDLTNRKSSQNLQRWSLEALNK  106 (202)
T ss_pred             hCcCCEEEEEEECcChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999763

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.3e-22  Score=130.19  Aligned_cols=100  Identities=24%  Similarity=0.347  Sum_probs=92.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+|++++|+.|+|||+|+.++..      ..|...+..|+|++.  ..+++++  .++++||++|++.|++....|++.
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~------krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~   78 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTD------KRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRG   78 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhc------cCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhcc
Confidence            478999999999999999999999      889889999999885  4666777  789999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +.++++|||++++++|.++..||.++.++.
T Consensus        79 a~GalLVydit~r~sF~hL~~wL~D~rq~~  108 (216)
T KOG0098|consen   79 AAGALLVYDITRRESFNHLTSWLEDARQHS  108 (216)
T ss_pred             CcceEEEEEccchhhHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998774

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.89  E-value=1.8e-22  Score=131.05  Aligned_cols=97  Identities=25%  Similarity=0.443  Sum_probs=86.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      ||+++|+++||||||++++..      +.+.+.+.+|.+..+  ..+.+++  .++.+||++|++++..++..+++++|+
T Consensus         2 ki~ivG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~   75 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCK------DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQA   75 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCE
Confidence            799999999999999999999      888888899988664  3455666  679999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +++|||++++++++.+..|+.++.+..
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~~~~~~  102 (170)
T cd04108          76 IIIVFDLTDVASLEHTRQWLEDALKEN  102 (170)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999987654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04175 Rap1 Rap1 subgroup

Probab=99.89  E-value=2.4e-22  Score=129.25  Aligned_cols=105  Identities=19%  Similarity=0.362  Sum_probs=88.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      ++||+++|++|||||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|++.+..++..+++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   74 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQ   74 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCC
Confidence            47999999999999999999998      777777778877543 3555665  56789999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|||++++++|+++..|+..+.......+.|
T Consensus        75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  108 (164)
T cd04175          75 GFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP  108 (164)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999998654434443

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.89  E-value=2.9e-22  Score=129.28  Aligned_cols=96  Identities=31%  Similarity=0.620  Sum_probs=86.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v   98 (128)
                      .|+++|+++||||||++++..      +.+...+.||.+.....+...+.++.+||++|++.++.++..+++++|++++|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~------~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V   74 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSS------ERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV   74 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhc------CCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            379999999999999999998      66677788998887666666779999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHhcC
Q 033075           99 IDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        99 ~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ||++++.++..++.|+.++...
T Consensus        75 ~D~t~~~s~~~~~~~l~~~~~~   96 (164)
T cd04162          75 VDSADSERLPLARQELHQLLQH   96 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHhC
Confidence            9999999999999999998754

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.89  E-value=5e-22  Score=130.41  Aligned_cols=116  Identities=30%  Similarity=0.507  Sum_probs=96.4

Q ss_pred             hHHHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075            5 FYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (128)
Q Consensus         5 ~~~~~~~~~-~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~   83 (128)
                      +.++|..+. .++.++|+++|+++||||||++++..      +.+. .+.+|.+.....+.+++.++.+||++|...++.
T Consensus         4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~   76 (184)
T smart00178        4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKN------DRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARR   76 (184)
T ss_pred             HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhc------CCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHH
Confidence            456677552 37889999999999999999999987      4433 345677777677778889999999999999999


Q ss_pred             hHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      .+..+++++|++++|+|++++++++.+..++.++++.....++|
T Consensus        77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p  120 (184)
T smart00178       77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP  120 (184)
T ss_pred             HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC
Confidence            99999999999999999999999999999999988765444444

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.89  E-value=4.4e-22  Score=132.23  Aligned_cols=96  Identities=27%  Similarity=0.477  Sum_probs=85.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +||+++|+++||||||++++..      +.+...+.+|.+.+.  ..+.++ +  ..+.+||++|++.+..++..+++++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~------~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a   74 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVH------GIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGA   74 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCC
Confidence            5899999999999999999998      777777888988653  445565 3  6789999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +++++|||++++++|+++..|+.++..
T Consensus        75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~  101 (201)
T cd04107          75 VGAIIVFDVTRPSTFEAVLKWKADLDS  101 (201)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.89  E-value=4.1e-22  Score=129.89  Aligned_cols=100  Identities=21%  Similarity=0.390  Sum_probs=86.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEEC------------CeEEEEEeCCCCccc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS------------NSKLVFWDLGGQPGL   81 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~~~D~~g~~~~   81 (128)
                      ..+||+++|+++||||||++++..      +.+...+.+|.+.+..  .+.+.            ...+.+||++|++.+
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   76 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTD------NKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF   76 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH
Confidence            468999999999999999999998      7777788888876543  33332            267999999999999


Q ss_pred             hhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ...+..+++++|++++|||++++++|.++..|+.++....
T Consensus        77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~  116 (180)
T cd04127          77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA  116 (180)
T ss_pred             HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999886543

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04122 Rab14 Rab14 subfamily

Probab=99.89  E-value=5.9e-22  Score=127.79  Aligned_cols=98  Identities=27%  Similarity=0.392  Sum_probs=85.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|++++|||||++++..      +.+...+.+|.+.+.  ..+.+++  ..+.+||++|++.+...+..+++++
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   75 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGA   75 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            47999999999999999999998      777777778877664  3445565  6789999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++|+++..|+.++...
T Consensus        76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~  103 (166)
T cd04122          76 AGALMVYDITRRSTYNHLSSWLTDARNL  103 (166)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999987553

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.89  E-value=5.3e-22  Score=134.40  Aligned_cols=99  Identities=24%  Similarity=0.435  Sum_probs=87.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      ..+||+++|+++||||||++++..      +.+...+.||++..+ ..+.+++  +.+.+||++|++.|..+...+++++
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~------~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a   85 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   85 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhc------CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence            578999999999999999999999      888888899988664 3455666  7799999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHH-HHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDS-KTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~-~~~l~~~~~~  120 (128)
                      |++++|||++++++|+++ ..|+.++...
T Consensus        86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~  114 (232)
T cd04174          86 DAVLLCFDISRPETVDSALKKWKAEIMDY  114 (232)
T ss_pred             cEEEEEEECCChHHHHHHHHHHHHHHHHh
Confidence            999999999999999985 7899988753

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.88  E-value=9.2e-22  Score=125.69  Aligned_cols=100  Identities=19%  Similarity=0.291  Sum_probs=85.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .+||+++|++|||||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|++.+..++..+++.++
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~   74 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE   74 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCC
Confidence            36899999999999999999998      667667777776443 3455665  56889999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      ++++|||++++++|+++..|+.++.+...
T Consensus        75 ~~i~v~~~~~~~s~~~~~~~~~~i~~~~~  103 (162)
T cd04138          75 GFLCVFAINSRKSFEDIHTYREQIKRVKD  103 (162)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998876543

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.88  E-value=5.8e-22  Score=133.40  Aligned_cols=100  Identities=19%  Similarity=0.424  Sum_probs=88.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE--ECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--VSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~--~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++|||||||++++..      +.+...+.+|+|.......  .++  ..+.+||++|++.+..++..+++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   84 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLT------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI   84 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhh------CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcc
Confidence            5789999999999999999999998      8888888899987755443  333  78999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .++++|+|||++++++|+++..|+.++...
T Consensus        85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~  114 (219)
T PLN03071         85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV  114 (219)
T ss_pred             cccEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998754

>cd04154 Arl2 Arl2 subfamily

Probab=99.88  E-value=8e-22  Score=128.04  Aligned_cols=106  Identities=38%  Similarity=0.669  Sum_probs=90.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      ...+||+++|++++|||||++++..      .. ...+.+|.+.....+.+++..+.+||++|++.++..+..+++.+|+
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~------~~-~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLG------ED-IDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHcc------CC-CCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            4678999999999999999999987      32 2356678887777788888999999999999999899999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +++|||++++++++++..|+.+++......+.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  117 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGAT  117 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC
Confidence            999999999999999999999987654433443

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.88  E-value=1.1e-21  Score=126.10  Aligned_cols=98  Identities=22%  Similarity=0.482  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|+++||||||++++..      +.+...+.++.+...  ..+.+++  ..+.+||++|++.+..++..+++.+|
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   74 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCE------GRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQ   74 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCC
Confidence            5899999999999999999999      777778888888664  3455555  78899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++++|||++++++++.+..|+.++....
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~  102 (168)
T cd04119          75 GVLLVYDVTDRQSFEALDSWLKEMKQEG  102 (168)
T ss_pred             EEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence            9999999999999999999999987643

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04117 Rab15 Rab15 subfamily

Probab=99.88  E-value=9.8e-22  Score=126.37  Aligned_cols=97  Identities=24%  Similarity=0.455  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|++++|||||++++..      +.+...+.+|.+.+.  ..+.+++  ..+.+||++|++.+..++..+++.+|
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~   74 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTD------NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQ   74 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCc
Confidence            4899999999999999999998      888778888888654  4566666  67889999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++|||++++++|+++..|+.++...
T Consensus        75 ~~i~v~d~~~~~sf~~~~~~~~~~~~~  101 (161)
T cd04117          75 GIFLVYDISSERSYQHIMKWVSDVDEY  101 (161)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999987654

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.88  E-value=8.9e-23  Score=126.46  Aligned_cols=121  Identities=33%  Similarity=0.640  Sum_probs=108.1

Q ss_pred             ChhhhHHHHhhh---hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC
Q 033075            1 MFSLFYGLWKYI---FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (128)
Q Consensus         1 m~~~~~~~~~~~---~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g   77 (128)
                      |-+.+++.+.++   +-..++.+.++|..++|||||++.+..      +++.....||.|++...++-+...+.+||++|
T Consensus         1 m~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~------g~~~edmiptvGfnmrk~tkgnvtiklwD~gG   74 (186)
T KOG0075|consen    1 MCAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIAR------GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGG   74 (186)
T ss_pred             ChhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEee------ccchhhhcccccceeEEeccCceEEEEEecCC
Confidence            445556665543   335789999999999999999999998      88888999999999999988889999999999


Q ss_pred             CccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +..++.+|..|++.++++++|+|.+|++.++..++.+..++..+....+|
T Consensus        75 q~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip  124 (186)
T KOG0075|consen   75 QPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIP  124 (186)
T ss_pred             CccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCc
Confidence            99999999999999999999999999999999999999999988777665

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.8e-22  Score=130.80  Aligned_cols=100  Identities=24%  Similarity=0.401  Sum_probs=92.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+|++++|++++|||-|+.++..      ++|.-+..+|+|+...  .+.+++  ...+||||.|+++|+.+...|++.
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftr------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg   86 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTR------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG   86 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcc------cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence            367899999999999999999999      8998899999998754  456666  788999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +.++++|||++++.+|+++..||.++..+.
T Consensus        87 AvGAllVYDITr~~Tfenv~rWL~ELRdha  116 (222)
T KOG0087|consen   87 AVGALLVYDITRRQTFENVERWLKELRDHA  116 (222)
T ss_pred             cceeEEEEechhHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999998875

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.88  E-value=1e-21  Score=132.33  Aligned_cols=95  Identities=24%  Similarity=0.409  Sum_probs=83.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      ++||+++|+++||||||+.++..      +.++..+.||++.++ ..+.+++  ..+.+||++|++.|..+++.+++++|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~------~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d   74 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAK------DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSD   74 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHc------CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCC
Confidence            37999999999999999999998      888888999988665 3556666  67899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHH-HHHHH
Q 033075           94 AVVFVIDAACPSRFEDSKT-ALGKF  117 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~-~l~~~  117 (128)
                      ++++|||++++++|+++.. |..++
T Consensus        75 ~illvfdis~~~Sf~~i~~~w~~~~   99 (222)
T cd04173          75 AVLICFDISRPETLDSVLKKWQGET   99 (222)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999954 65544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04116 Rab9 Rab9 subfamily

Probab=99.88  E-value=2.1e-21  Score=125.51  Aligned_cols=101  Identities=20%  Similarity=0.405  Sum_probs=87.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+...  ..+.+++  ..+.+||++|++.+..++..+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~   76 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYR   76 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHc------CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhc
Confidence            4679999999999999999999998      777767777877653  4555665  67889999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      .+|++++|||++++++++.+..|+.++....
T Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  107 (170)
T cd04116          77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYA  107 (170)
T ss_pred             CCCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence            9999999999999999999999999887643

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.88  E-value=1.4e-21  Score=126.38  Aligned_cols=98  Identities=17%  Similarity=0.417  Sum_probs=85.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE--CC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|+++||||||+++++.      +.+...+.+|.+.......+  ++  ..+.+||++|++.+..++..+++.+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   74 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQ   74 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCC
Confidence            5899999999999999999998      77777788888876655433  32  78999999999999888889999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++++|||++++++++++..|+.++....
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~  102 (166)
T cd00877          75 CAIIMFDVTSRVTYKNVPNWHRDLVRVC  102 (166)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999987654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.88  E-value=2.5e-21  Score=125.40  Aligned_cols=103  Identities=29%  Similarity=0.530  Sum_probs=86.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccch-hhHHHhhhc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLR-SIWEKYYEE   91 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~   91 (128)
                      .+||+++|++|+|||||++++..      +.++..+.++.+...  ..+.+++  ..+.+||++|++.++ .++..++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   75 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCA------GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRN   75 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh------CCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcC
Confidence            58999999999999999999998      777777778877553  3455566  789999999999886 478888999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE  125 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~  125 (128)
                      +|++++|||++++++|+.+..|+.++.......+
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  109 (170)
T cd04115          76 VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE  109 (170)
T ss_pred             CCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998876543333

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04111 Rab39 Rab39 subfamily

Probab=99.87  E-value=1.7e-21  Score=130.45  Aligned_cols=99  Identities=30%  Similarity=0.521  Sum_probs=85.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+||+++|+++||||||++++..      +.+...+.+|++.+.  ..+.+. +  ..+.+||++|++.+..++..++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~------~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   75 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTE------GRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRN   75 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998      666666778877653  344443 3  679999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +|++++|||++++++|+++..|+.++....
T Consensus        76 ~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~  105 (211)
T cd04111          76 SVGVLLVFDITNRESFEHVHDWLEEARSHI  105 (211)
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999987653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.87  E-value=1.9e-21  Score=130.54  Aligned_cols=97  Identities=28%  Similarity=0.441  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC---eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN---SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +||+++|+++||||||++++..      +.+...+.+|.+.+.  ..+.+++   ..+.+||++|++.+..++..+++++
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~------~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~a   74 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAK------EGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGA   74 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcC
Confidence            5899999999999999999998      777788889988664  4455543   7899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++|+++..|+..+...
T Consensus        75 d~iilV~D~t~~~s~~~~~~w~~~l~~~  102 (215)
T cd04109          75 HAVFLVYDVTNSQSFENLEDWYSMVRKV  102 (215)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.87  E-value=2.2e-21  Score=125.23  Aligned_cols=98  Identities=27%  Similarity=0.475  Sum_probs=86.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|++++|||||++++..      +.+...+.++.+...  ..+.+++  ..+.+||++|++.+..++..+++++
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~a   76 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSE------DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA   76 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhh------CcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCC
Confidence            58999999999999999999998      777778888887653  4555666  6789999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++|+++..|+..+...
T Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~  104 (167)
T cd01867          77 MGIILVYDITDEKSFENIRNWMRNIEEH  104 (167)
T ss_pred             CEEEEEEECcCHHHHHhHHHHHHHHHHh
Confidence            9999999999999999999999988754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=9.3e-22  Score=122.89  Aligned_cols=98  Identities=28%  Similarity=0.453  Sum_probs=89.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+|++++|+.|.|||+|+++|..      .++.+...+|+|++..  .+.+.+  +++++||+.|+++|+.....|++++
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie------~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIE------NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHH------hhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            57999999999999999999999      8999999999998864  344555  7899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+.++|||++++++|+.+..|+.+....
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~l  110 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTL  110 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhh
Confidence            9999999999999999999999987654

>cd04157 Arl6 Arl6 subfamily

Probab=99.87  E-value=2.1e-21  Score=124.31  Aligned_cols=97  Identities=34%  Similarity=0.641  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCC-CCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~   97 (128)
                      +|+++|+++||||||++++..      .. +...+.+|.+.....+...+..+.+||+||.+++..++..+++.+|++++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~------~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   74 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKP------ENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIF   74 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcc------cCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEE
Confidence            589999999999999999987      43 34466788887766666777999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHhcCc
Q 033075           98 VIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        98 v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      |+|++++.++..+..|+..+.+..
T Consensus        75 v~D~~~~~~~~~~~~~~~~~~~~~   98 (162)
T cd04157          75 VIDSSDRLRLVVVKDELELLLNHP   98 (162)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCc
Confidence            999999999999999999887754

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.87  E-value=2.6e-21  Score=124.62  Aligned_cols=109  Identities=57%  Similarity=0.998  Sum_probs=91.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v   98 (128)
                      +|+++|++|+|||||++++.......++.++..+.+|.+.+...+.+++..+.+||+||++.+..++..+++.+|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            58999999999999999998743332244456677888888888888889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           99 IDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +|+++++++..+..|+.++.+.....+.|
T Consensus        81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p  109 (167)
T cd04160          81 IDSTDRERFEESKSALEKVLRNEALEGVP  109 (167)
T ss_pred             EECchHHHHHHHHHHHHHHHhChhhcCCC
Confidence            99999999999999999988765444443

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.87  E-value=3.3e-21  Score=123.81  Aligned_cols=99  Identities=21%  Similarity=0.272  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +||+++|++|+|||||++++..      +.+.+.+.++.+.....+.+++  ..+.+||++|++.     ..+++.+|++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~   69 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLT------GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAV   69 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh------CCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEE
Confidence            5899999999999999999998      6666666565554456677877  6699999999975     3466889999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           96 VFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        96 v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++|||++++++|+++..|+.++....+.++.|
T Consensus        70 ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p  101 (158)
T cd04103          70 IFVFSLENEASFQTVYNLYHQLSSYRNISEIP  101 (158)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99999999999999999999998765444433

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.87  E-value=3.7e-21  Score=123.38  Aligned_cols=100  Identities=16%  Similarity=0.291  Sum_probs=84.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +.+||+++|++++|||||++++..      +.+...+.++.+... ....+++  ..+.+||+||++++..++..+++.+
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   74 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQ------SYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTG   74 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhC
Confidence            358999999999999999999998      666666666666432 3445666  5788999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      |++++|||++++++|+.+..|+.++.+..
T Consensus        75 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~  103 (164)
T cd04145          75 EGFLLVFSVTDRGSFEEVDKFHTQILRVK  103 (164)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999887643

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01865 Rab3 Rab3 subfamily

Probab=99.87  E-value=1.7e-21  Score=125.56  Aligned_cols=97  Identities=26%  Similarity=0.420  Sum_probs=84.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|+++||||||++++..      +++...+.++.+.+.  ..+..++  ..+.+||++|++.+...+..++++++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~   75 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAM   75 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCc
Confidence            7999999999999999999998      777777788887654  3444444  67999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++|||++++++|+++..|+.++...
T Consensus        76 ~~l~v~d~~~~~s~~~~~~~~~~i~~~  102 (165)
T cd01865          76 GFILMYDITNEESFNAVQDWSTQIKTY  102 (165)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998543

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PLN00023 GTP-binding protein; Provisional

Probab=99.87  E-value=2.1e-21  Score=135.84  Aligned_cols=101  Identities=19%  Similarity=0.321  Sum_probs=89.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC---------------CeEEEEEeCC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS---------------NSKLVFWDLG   76 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~---------------~~~~~~~D~~   76 (128)
                      ....+||+++|+.+||||||++++..      +.+...+.+|+|...  ..+.++               .+.+.|||++
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~------g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTA   91 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVK------GSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVS   91 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhc------CCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECC
Confidence            34679999999999999999999998      778778889998764  445543               2669999999


Q ss_pred             CCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++.|+.++..|+++++++|+|||++++++|+++..|+.++...
T Consensus        92 GqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~  135 (334)
T PLN00023         92 GHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAAT  135 (334)
T ss_pred             CChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999765

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.87  E-value=4e-21  Score=123.77  Aligned_cols=98  Identities=29%  Similarity=0.513  Sum_probs=84.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|++++|||||++++..      +.+...+.++.+...  ..+..++  ..+.+||++|++.+...+..+++.+
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   75 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   75 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcC
Confidence            47999999999999999999998      666667777777543  4555565  5789999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++|+++..|+.++...
T Consensus        76 ~~ii~v~d~~~~~s~~~l~~~~~~~~~~  103 (166)
T cd01869          76 HGIIIVYDVTDQESFNNVKQWLQEIDRY  103 (166)
T ss_pred             CEEEEEEECcCHHHHHhHHHHHHHHHHh
Confidence            9999999999999999999999988653

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04110 Rab35 Rab35 subfamily

Probab=99.87  E-value=3.7e-21  Score=127.69  Aligned_cols=99  Identities=28%  Similarity=0.490  Sum_probs=86.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+||+++|++|+|||||++++..      +.+...+.+|.+...  ..+.+++  ..+.+||++|++.+..++..++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~   78 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRG   78 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCC
Confidence            468999999999999999999998      777777788888654  4455555  578999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++++|||++++++|+.+..|+..+...
T Consensus        79 a~~iilv~D~~~~~s~~~~~~~~~~i~~~  107 (199)
T cd04110          79 THGVIVVYDVTNGESFVNVKRWLQEIEQN  107 (199)
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999987654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd00879 Sar1 Sar1 subfamily

Probab=99.87  E-value=6.7e-21  Score=125.28  Aligned_cols=115  Identities=34%  Similarity=0.569  Sum_probs=95.0

Q ss_pred             HHHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075            6 YGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (128)
Q Consensus         6 ~~~~~~~~-~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   84 (128)
                      .+.++.+. ..+..|++++|++|||||||++++..      +.+ ..+.+|.+.....+.+++..+.+||+||+..+...
T Consensus         7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~------~~~-~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~   79 (190)
T cd00879           7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD------DRL-AQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRL   79 (190)
T ss_pred             HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc------CCC-cccCCccCcceEEEEECCEEEEEEECCCCHHHHHH
Confidence            34444332 35689999999999999999999987      444 35667777777788888899999999999999888


Q ss_pred             HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +..+++.++++++|+|+++.++++++..|+.++.+.....+.|
T Consensus        80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p  122 (190)
T cd00879          80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP  122 (190)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC
Confidence            8999999999999999999999999999999998765544444

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04126 Rab20 Rab20 subfamily

Probab=99.87  E-value=2.7e-21  Score=130.14  Aligned_cols=96  Identities=23%  Similarity=0.310  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~   97 (128)
                      +||+++|.+++|||||++++..      +.+.. +.+|++.......+....+.+||++|++.+..++..+++.+|++|+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~------~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il   73 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYME------RRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVIL   73 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhc------CCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence            5899999999999999999998      77764 5688887665555666889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHhcC
Q 033075           98 VIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        98 v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |||++++++|+++..|+..+...
T Consensus        74 V~Dvt~~~Sf~~l~~~~~~l~~~   96 (220)
T cd04126          74 TYDVSNVQSLEELEDRFLGLTDT   96 (220)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999887653

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.87  E-value=3e-21  Score=125.70  Aligned_cols=97  Identities=22%  Similarity=0.355  Sum_probs=83.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .+||+++|+++||||||+.++..      +.+.+.+.+|.+... ..+.+++  .++.+||++|++.+..++..+++++|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   74 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD   74 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhc------CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCC
Confidence            47999999999999999999998      888888888876543 3455655  67889999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           94 AVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      ++|+|||++++++|+++. .|+..+..
T Consensus        75 ~~ilv~d~~~~~sf~~~~~~~~~~~~~  101 (174)
T cd01871          75 VFLICFSLVSPASFENVRAKWYPEVRH  101 (174)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999996 58776654

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.87  E-value=3.9e-21  Score=118.56  Aligned_cols=106  Identities=37%  Similarity=0.717  Sum_probs=98.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      ++.+|++++|..++||||+++++.       ++.+....||.|++...+.+.+ ..+.+||++|+...+..|..|+.+.|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~-------sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd   87 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLK-------SEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVD   87 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHc-------cCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccc
Confidence            689999999999999999999988       4566678899999999999988 89999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|+|.+|+..|+++.+.+-+++...+....|
T Consensus        88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp  121 (185)
T KOG0074|consen   88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP  121 (185)
T ss_pred             eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc
Confidence            9999999999999999999999999988776654

>cd04124 RabL2 RabL2 subfamily

Probab=99.87  E-value=5.1e-21  Score=123.01  Aligned_cols=96  Identities=21%  Similarity=0.400  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|++++|||||++++..      +.+...+.++.+...  ....+++  ..+.+||++|++.+..++..+++.+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   74 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLM------DGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAH   74 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCC
Confidence            5899999999999999999998      666666666665443  2334454  67889999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++++|||++++.+++++..|+.++..
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~  100 (161)
T cd04124          75 ACILVFDVTRKITYKNLSKWYEELRE  100 (161)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998864

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04144 Ras2 Ras2 subfamily

Probab=99.87  E-value=3.3e-21  Score=127.04  Aligned_cols=96  Identities=20%  Similarity=0.262  Sum_probs=82.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      ||+++|++|||||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|++.+..++..+++.+|++
T Consensus         1 ki~ivG~~~vGKTsli~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~   74 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCL------NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGF   74 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEE
Confidence            589999999999999999998      777777777776543 3445666  5688999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHhcC
Q 033075           96 VFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        96 v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++|||++++++|+.+..|+..+...
T Consensus        75 ilv~d~~~~~s~~~~~~~~~~i~~~   99 (190)
T cd04144          75 ILVYSITSRSTFERVERFREQIQRV   99 (190)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.87  E-value=4.6e-21  Score=122.87  Aligned_cols=98  Identities=26%  Similarity=0.545  Sum_probs=86.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      ||+++|++++|||||++++..      +.++..+.+|.|.+.  ..+..++  ..+.+||++|++.+..++..+++++|+
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~   74 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLIN------GEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDA   74 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH------SSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESE
T ss_pred             CEEEECCCCCCHHHHHHHHHh------hcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999      888888889987664  4455555  679999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +++|||+++++||+++..|+..+.....
T Consensus        75 ~ii~fd~~~~~S~~~~~~~~~~i~~~~~  102 (162)
T PF00071_consen   75 IIIVFDVTDEESFENLKKWLEEIQKYKP  102 (162)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHST
T ss_pred             cccccccccccccccccccccccccccc
Confidence            9999999999999999999999875543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.87  E-value=6.2e-21  Score=122.52  Aligned_cols=99  Identities=20%  Similarity=0.331  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +||+++|++|||||||++++..      +.+...+.++.+.. ...+.+++  ..+.+||++|++++..++..+++.+|+
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~   74 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQ------GHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEG   74 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCE
Confidence            5899999999999999999998      66666666666533 23445555  678899999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +++|||++++++|+++..|...+.+...
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~  102 (164)
T smart00173       75 FLLVYSITDRQSFEEIKKFREQILRVKD  102 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999888766543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.86  E-value=6.7e-21  Score=124.92  Aligned_cols=100  Identities=39%  Similarity=0.684  Sum_probs=83.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE-----CCeEEEEEeCCCCccchhhHHHhhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-----SNSKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      +.+||+++|+++||||||++++..      +.+... .+|.+.......+     .+..+.+||++|++.+..++..+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~------~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   74 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKF------NEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTR   74 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc------CCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhc
Confidence            368999999999999999999987      555433 5777765544433     2378999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      ++|++++|+|++++++++.+..|+.++.....
T Consensus        75 ~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~  106 (183)
T cd04152          75 CTDGIVFVVDSVDVERMEEAKTELHKITRFSE  106 (183)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999988876543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.86  E-value=7e-21  Score=130.17  Aligned_cols=97  Identities=15%  Similarity=0.267  Sum_probs=85.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce-EEEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL-NIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +||+++|++++|||||++++..      +.+...+.+|++. ....+.+++  +.+.+||++|.+.|..++..++..+|+
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~------~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~   74 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLG------GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDV   74 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCE
Confidence            5899999999999999999998      7887777888763 344566666  678899999999998888888999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++|||++++++|+++..|++++...
T Consensus        75 iIlVfdv~~~~Sf~~i~~~~~~I~~~  100 (247)
T cd04143          75 FILVFSLDNRESFEEVCRLREQILET  100 (247)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01892 Miro2 Miro2 subfamily

Probab=99.86  E-value=7.8e-21  Score=123.19  Aligned_cols=98  Identities=19%  Similarity=0.324  Sum_probs=86.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      ++.+||+++|++|+|||||++++..      +.+. ..+.+|.+...  ..+.+++  ..+.+||++|++.+..++..++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~   75 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLG------RSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAEL   75 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhC------CCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhh
Confidence            5789999999999999999999998      7777 77888887653  4566666  6788999999999988888999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      +++|++++|||++++++|+.+..|+..+.
T Consensus        76 ~~~d~~llv~d~~~~~s~~~~~~~~~~~~  104 (169)
T cd01892          76 AACDVACLVYDSSDPKSFSYCAEVYKKYF  104 (169)
T ss_pred             hcCCEEEEEEeCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01864 Rab19 Rab19 subfamily

Probab=99.86  E-value=9.2e-21  Score=122.03  Aligned_cols=99  Identities=27%  Similarity=0.504  Sum_probs=85.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+||+++|++|+|||||++++..      +.+...+.++.+..  ...+.+++  ..+.+||+||++.+...+..+++.
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~   75 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKS------GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRS   75 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhh------CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc
Confidence            368999999999999999999988      66766666777644  35566666  578999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +|++++|||++++.+|+.+..|+..+...
T Consensus        76 ~d~~llv~d~~~~~s~~~~~~~~~~i~~~  104 (165)
T cd01864          76 ANGAIIAYDITRRSSFESVPHWIEEVEKY  104 (165)
T ss_pred             CCEEEEEEECcCHHHHHhHHHHHHHHHHh
Confidence            99999999999999999999999988653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.86  E-value=9.7e-22  Score=123.90  Aligned_cols=100  Identities=29%  Similarity=0.473  Sum_probs=88.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC---eEEEEEeCCCCccchhhHHHhhhc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN---SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .++++++|++-+|||+|++.+..      +++++...||+|++.  ..+++..   .++++||+.|+++|++..+.|+++
T Consensus         8 qfrlivigdstvgkssll~~ft~------gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrn   81 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTE------GKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRN   81 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhc------CcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhc
Confidence            78999999999999999999999      999999999999873  2333332   789999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +-++++|||+++++||+++..|+++....-.
T Consensus        82 svgvllvyditnr~sfehv~~w~~ea~m~~q  112 (213)
T KOG0091|consen   82 SVGVLLVYDITNRESFEHVENWVKEAAMATQ  112 (213)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999765443

>cd04125 RabA_like RabA-like subfamily

Probab=99.86  E-value=8.3e-21  Score=124.81  Aligned_cols=97  Identities=29%  Similarity=0.496  Sum_probs=84.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|+++||||||++++..      +.+...+.+|.+...  ..+.+++  ..+.+||++|.+.+...+..+++++|
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d   74 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTE------DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAH   74 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCC
Confidence            5899999999999999999998      777766778877543  4555655  67899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++|||++++++|+++..|+.++...
T Consensus        75 ~iilv~d~~~~~s~~~i~~~~~~i~~~  101 (188)
T cd04125          75 GYLLVYDVTDQESFENLKFWINEINRY  101 (188)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988753

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.86  E-value=1e-20  Score=121.15  Aligned_cols=96  Identities=23%  Similarity=0.478  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC--C--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS--N--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      +||+++|++++|||||++++..      +.+...+.+|.+.++  ..+.++  +  ..+.+||+||++.+...+..++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   74 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVK------GIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRG   74 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcC
Confidence            4899999999999999999998      777777778887664  334444  2  789999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +|++++|||++++++|+.+..|+.++..
T Consensus        75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~  102 (162)
T cd04106          75 AQACILVFSTTDRESFEAIESWKEKVEA  102 (162)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.86  E-value=1e-20  Score=121.08  Aligned_cols=102  Identities=35%  Similarity=0.665  Sum_probs=85.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~   97 (128)
                      +|+++|++++|||||++++..      +.+.. ..+|.+.....+...+ ..+.+||++|+..+...+..+++.+|++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~------~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~   73 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKH------AELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY   73 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhc------CCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            589999999999999999998      55543 3577777666666544 789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           98 VIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        98 v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      |+|++++.++.++..|+.+++......+.|
T Consensus        74 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p  103 (160)
T cd04156          74 VVDSSDEARLDESQKELKHILKNEHIKGVP  103 (160)
T ss_pred             EEECCcHHHHHHHHHHHHHHHhchhhcCCC
Confidence            999999999999999999988765444444

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.86  E-value=1.4e-20  Score=120.66  Aligned_cols=99  Identities=24%  Similarity=0.428  Sum_probs=85.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      ++||+++|++++|||||++++..      +.+...+.++.+..  ...+.+++  ..+.+||++|++++...+..+++++
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   74 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVK------NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGA   74 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccC
Confidence            47999999999999999999998      66666667777743  34555665  6789999999999998999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      |++++|+|++++++++.+..|+..+....
T Consensus        75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  103 (163)
T cd01860          75 AAAIVVYDITSEESFEKAKSWVKELQRNA  103 (163)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999887654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04177 RSR1 RSR1 subgroup

Probab=99.86  E-value=1.5e-20  Score=121.48  Aligned_cols=105  Identities=13%  Similarity=0.291  Sum_probs=87.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .+||+++|++|||||||++++..      +.+...+.++.+... ..+.+++  ..+.+||++|++++..++..+++.++
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   74 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQ------NVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQ   74 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCC
Confidence            37899999999999999999998      777777777776443 4455555  67899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|||++++++++.+..|...+.+.....+.|
T Consensus        75 ~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p  108 (168)
T cd04177          75 GFLLVYSVTSEASLNELGELREQVLRIKDSDNVP  108 (168)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            9999999999999999999998887543333333

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.86  E-value=1.6e-20  Score=120.01  Aligned_cols=102  Identities=39%  Similarity=0.734  Sum_probs=89.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v   98 (128)
                      ||+++|.+++|||||++++..      +. ...+.++.+.....+.+.+..+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ki~iiG~~~~GKssli~~~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   73 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKL------GE-VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV   73 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhc------CC-CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence            689999999999999999998      44 34567788888788888889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           99 IDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ||+++++++..+..|+..+.......+.|
T Consensus        74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p  102 (158)
T cd00878          74 VDSSDRERIEEAKEELHKLLNEEELKGVP  102 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCc
Confidence            99999999999999999988865544444

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01866 Rab2 Rab2 subfamily

Probab=99.86  E-value=1.2e-20  Score=121.91  Aligned_cols=98  Identities=27%  Similarity=0.363  Sum_probs=84.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|++++|||||++++..      +.+...+.++.+.+.  ..+..++  ..+.+||++|.+.+..+...+++.+
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   77 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGA   77 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC
Confidence            47999999999999999999998      666666667766553  3445555  6799999999999999989999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++++.+..|+.++...
T Consensus        78 d~il~v~d~~~~~s~~~~~~~~~~~~~~  105 (168)
T cd01866          78 AGALLVYDITRRETFNHLTSWLEDARQH  105 (168)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988664

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.85  E-value=1.9e-20  Score=118.88  Aligned_cols=100  Identities=35%  Similarity=0.695  Sum_probs=88.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 033075           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI   99 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~   99 (128)
                      |+++|++|||||||++++..      ..+...+.++.+.+...+..++..+.+||++|+..+...+..+++.+|++++|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~   75 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAG------GQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV   75 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHcc------CCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence            78999999999999999998      777778888988887777777799999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHhcCccccc
Q 033075          100 DAACPSRFEDSKTALGKFFGMRICKE  125 (128)
Q Consensus       100 d~~~~~s~~~~~~~l~~~~~~~~~~~  125 (128)
                      |+++++++..+..|+.++.......+
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~  101 (159)
T cd04159          76 DAADRTALEAAKNELHDLLEKPSLEG  101 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHcChhhcC
Confidence            99999999999999998876543333

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.85  E-value=1.6e-20  Score=120.54  Aligned_cols=99  Identities=20%  Similarity=0.371  Sum_probs=82.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +||+++|+++||||||++++..  .  ...++..+.+|.+.+.  ..+.+. +  .++.+||++|++.+..++..+++++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~--~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   76 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHS--N--GAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESP   76 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc--C--CCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCC
Confidence            5899999999999999999986  1  0256677888887664  233333 2  7899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++++++..|+.++...
T Consensus        77 d~ii~v~d~~~~~s~~~~~~~~~~~~~~  104 (164)
T cd04101          77 SVFILVYDVSNKASFENCSRWVNKVRTA  104 (164)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999887654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01861 Rab6 Rab6 subfamily

Probab=99.85  E-value=2.2e-20  Score=119.51  Aligned_cols=98  Identities=20%  Similarity=0.427  Sum_probs=83.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|+++||||||++++..      ..+...+.++.+.+.  ..+.+++  ..+.+||+||++.+..++..+++.+|
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~   74 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMY------DTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSS   74 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc------CCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCC
Confidence            4899999999999999999998      666556666666543  4455555  57999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++++|||++++++|+.+..|+..+....
T Consensus        75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~  102 (161)
T cd01861          75 VAVVVYDITNRQSFDNTDKWIDDVRDER  102 (161)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999886543

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04140 ARHI_like ARHI subfamily

Probab=99.85  E-value=2.2e-20  Score=120.36  Aligned_cols=96  Identities=19%  Similarity=0.303  Sum_probs=81.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +||+++|++|+|||||++++..      +.+...+.++.+..+. .+....  ..+.+||++|++++..++..+++.+++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   75 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVK------GTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHA   75 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCE
Confidence            7899999999999999999998      7777777777765432 233333  678999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhc
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +++|||++++++|++++.|+..+..
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~i~~  100 (165)
T cd04140          76 FILVYSVTSKQSLEELKPIYELICE  100 (165)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04113 Rab4 Rab4 subfamily

Probab=99.85  E-value=2.2e-20  Score=119.68  Aligned_cols=96  Identities=29%  Similarity=0.457  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|++++|||||++++..      +.+...+.++.+...  ..+.+++  ..+.+||++|++.+...+..+++.+|
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~   74 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVE------NKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAA   74 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCC
Confidence            5899999999999999999998      776666677766543  3445555  67899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++++|||++++++++++..|+.++..
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~~~~  100 (161)
T cd04113          75 GALLVYDITNRTSFEALPTWLSDARA  100 (161)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04151 Arl1 Arl1 subfamily

Probab=99.85  E-value=1.6e-20  Score=120.13  Aligned_cols=102  Identities=35%  Similarity=0.666  Sum_probs=84.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v   98 (128)
                      ||+++|++++|||||++++..      +.+. .+.+|.+.+...+...+.++.+||+||...++.++..+++.++++++|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   73 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQL------GEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV   73 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHcc------CCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            689999999999999999977      4443 345777777667777789999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           99 IDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +|++++.++..+.+++..++......++|
T Consensus        74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  102 (158)
T cd04151          74 VDSTDRDRLGTAKEELHAMLEEEELKGAV  102 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCc
Confidence            99999988988888888776654433443

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01868 Rab11_like Rab11-like

Probab=99.85  E-value=2.6e-20  Score=119.78  Aligned_cols=98  Identities=24%  Similarity=0.404  Sum_probs=84.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+++||||||++++..      +.+...+.++.+.+.  ..+..++  ..+.+||++|++.+..++..+++.+
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   76 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTR------NEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGA   76 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCC
Confidence            47999999999999999999998      666666677777543  4455556  5789999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++++|||++++.+++++..|+.++...
T Consensus        77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~  104 (165)
T cd01868          77 VGALLVYDITKKQTFENVERWLKELRDH  104 (165)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988664

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04112 Rab26 Rab26 subfamily

Probab=99.85  E-value=2e-20  Score=123.43  Aligned_cols=97  Identities=32%  Similarity=0.571  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +||+++|+++||||||++++..      +.+. +.+.+|.+....  .+.+++  ..+.+||+||++.+...+..+++.+
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   74 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKD------GAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDA   74 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCC
Confidence            5899999999999999999998      6554 355677765543  355665  6899999999999999889999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++|+++..|+..+...
T Consensus        75 d~~i~v~D~~~~~s~~~~~~~~~~i~~~  102 (191)
T cd04112          75 HALLLLYDITNKASFDNIRAWLTEIKEY  102 (191)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999888754

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=99.85  E-value=1.4e-20  Score=124.01  Aligned_cols=97  Identities=27%  Similarity=0.422  Sum_probs=83.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      .||+++|++|||||||++++..      +.+++.+.+|.+..+ ..+..++  ..+.+||++|++.+..++..+++.+|+
T Consensus         1 ~kivivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~   74 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTR------GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDV   74 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCE
Confidence            3899999999999999999998      888888888887654 3444555  679999999999999898899999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHhcC
Q 033075           95 VVFVIDAACPSRFEDSK-TALGKFFGM  120 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~-~~l~~~~~~  120 (128)
                      +++|||++++++|+++. .|+.++...
T Consensus        75 ~ilv~dv~~~~sf~~~~~~~~~~i~~~  101 (189)
T cd04134          75 IMLCFSVDSPDSLENVESKWLGEIREH  101 (189)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999986 588887643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=99.85  E-value=2.7e-20  Score=122.70  Aligned_cols=97  Identities=26%  Similarity=0.382  Sum_probs=83.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-CCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +||+++|++++|||||++++..      +.+.. .+.+|.+..+  ..+.+++  ..+.+||++|.+.+..++..+++++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~   74 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVH------HRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGA   74 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCC
Confidence            5899999999999999999998      66653 5677777543  4566666  5677999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++|+++..|+..+...
T Consensus        75 d~iilv~d~~~~~s~~~~~~~~~~i~~~  102 (193)
T cd04118          75 KAAIVCYDLTDSSSFERAKFWVKELQNL  102 (193)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03110 Rab GTPase; Provisional

Probab=99.85  E-value=3.2e-20  Score=124.70  Aligned_cols=99  Identities=22%  Similarity=0.381  Sum_probs=86.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+||+++|++++|||||++++..      +.+...+.+|.+.+.  ..+.+++  ..+.+||++|++++..++..+++.
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~------~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   84 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTR------NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG   84 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence            468999999999999999999998      677667778888664  4555666  689999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++++|||++++++|+++..|+..+...
T Consensus        85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~  113 (216)
T PLN03110         85 AVGALLVYDITKRQTFDNVQRWLRELRDH  113 (216)
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999887654

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.85  E-value=3.2e-20  Score=121.78  Aligned_cols=96  Identities=22%  Similarity=0.348  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|++++|||||++++..      +.++..+.++.+..+ ..+... +  ..+.+||++|++.+..++..+++.+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad   74 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQ------GKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVD   74 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh------CcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCC
Confidence            5899999999999999999998      777777778877654 344454 3  67999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHH-HHHHHhc
Q 033075           94 AVVFVIDAACPSRFEDSKT-ALGKFFG  119 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~-~l~~~~~  119 (128)
                      ++++|||++++++|+++.. |+..+..
T Consensus        75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~  101 (187)
T cd04132          75 VLLICYAVDNPTSLDNVEDKWFPEVNH  101 (187)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999964 8776653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01862 Rab7 Rab7 subfamily

Probab=99.84  E-value=5.5e-20  Score=118.75  Aligned_cols=98  Identities=27%  Similarity=0.457  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|+++||||||++++.+      ..+...+.++.+...  ..+.+.+  ..+.+||+||++.+..++..+++.+|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d   74 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGAD   74 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCC
Confidence            5899999999999999999998      666566667766543  4455665  56789999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +++++||++++.+++++..|..++....
T Consensus        75 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~  102 (172)
T cd01862          75 CCVLVYDVTNPKSFESLDSWRDEFLIQA  102 (172)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999988775543

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01863 Rab18 Rab18 subfamily

Probab=99.84  E-value=4.4e-20  Score=118.19  Aligned_cols=99  Identities=25%  Similarity=0.483  Sum_probs=83.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +|++++|++++|||||++++..      ..+...+.++.+.+.  ..+.+.+  .++.+||+||++.+...+..+++.+|
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   74 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTD------DTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQ   74 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc------CCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCC
Confidence            5899999999999999999998      655555667777553  3344544  67999999999999888899999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      ++++|||++++.+|+.+..|+..+.....
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  103 (161)
T cd01863          75 GVILVYDVTRRDTFTNLETWLNELETYST  103 (161)
T ss_pred             EEEEEEECCCHHHHHhHHHHHHHHHHhCC
Confidence            99999999999999999999988766543

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.84  E-value=5.3e-20  Score=117.92  Aligned_cols=98  Identities=31%  Similarity=0.534  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|++++|||||++++..      ..+.....++.+...  ..+..++  .++.+||+||++.+...+..+++.+|
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   74 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTD------GKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAV   74 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCC
Confidence            5899999999999999999998      555556667766543  3455665  67899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++++|||++++.+++.+..|+.++....
T Consensus        75 ~~ilv~d~~~~~s~~~~~~~l~~~~~~~  102 (164)
T smart00175       75 GALLVYDITNRESFENLKNWLKELREYA  102 (164)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999876543

Rab GTPases are implicated in vesicle trafficking.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.2e-20  Score=115.25  Aligned_cols=97  Identities=27%  Similarity=0.430  Sum_probs=85.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE-CC---eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SN---SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~---~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+|+.++|++.+||||++.+.+.      ..|...+..|.|+..+.-++ .+   ..+++||+.|++.|+.+...|++++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~d------dSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga   94 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA   94 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhc------cccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence            67999999999999999999998      88888888899987543332 22   7899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +++++|||+++++||..++.|..++-.
T Consensus        95 mgfiLmyDitNeeSf~svqdw~tqIkt  121 (193)
T KOG0093|consen   95 MGFILMYDITNEESFNSVQDWITQIKT  121 (193)
T ss_pred             ceEEEEEecCCHHHHHHHHHHHHHhee
Confidence            999999999999999999999988754

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.84  E-value=2.6e-20  Score=123.78  Aligned_cols=92  Identities=17%  Similarity=0.397  Sum_probs=81.6

Q ss_pred             EcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEE--EEECC--eEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075           23 LGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (128)
Q Consensus        23 ~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v   98 (128)
                      +|+++||||||+++++.      +.+...+.+|+|.+...  +.+++  ..+.+||++|+++|..++..+++++|++++|
T Consensus         1 vG~~~vGKTsLi~r~~~------~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV   74 (200)
T smart00176        1 VGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   74 (200)
T ss_pred             CCCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEE
Confidence            69999999999999998      78877888999876543  34444  7899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHhcC
Q 033075           99 IDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        99 ~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ||++++++|++++.|+.++...
T Consensus        75 ~D~t~~~S~~~i~~w~~~i~~~   96 (200)
T smart00176       75 FDVTARVTYKNVPNWHRDLVRV   96 (200)
T ss_pred             EECCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999998764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.83  E-value=6.6e-20  Score=119.03  Aligned_cols=96  Identities=20%  Similarity=0.293  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +|++++|++|+|||||++++..      +.+...+.+|.... ...+.+++  ..+.+||++|++++..++..+++++|+
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~   74 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTT------NGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDV   74 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcE
Confidence            5899999999999999999998      77777777775422 23455655  678899999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           95 VVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      +++|||++++++|+++. .|+..+..
T Consensus        75 ~i~v~d~~~~~sf~~~~~~~~~~~~~  100 (173)
T cd04130          75 FLLCFSVVNPSSFQNISEKWIPEIRK  100 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999985 58877764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PLN03108 Rab family protein; Provisional

Probab=99.83  E-value=1.2e-19  Score=121.41  Aligned_cols=99  Identities=27%  Similarity=0.363  Sum_probs=85.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+||+++|++++|||||++++..      ..+...+.++++.+.  ..+.+++  ..+.+||++|.+.+..++..+++.
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~------~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~   78 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG   78 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence            458999999999999999999998      666666677777653  3456666  568899999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +|++++|||++++++|+.+..|+..+...
T Consensus        79 ad~~vlv~D~~~~~s~~~l~~~~~~~~~~  107 (210)
T PLN03108         79 AAGALLVYDITRRETFNHLASWLEDARQH  107 (210)
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999887543

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.83  E-value=1e-19  Score=120.71  Aligned_cols=98  Identities=17%  Similarity=0.263  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc-eEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      ||+++|++|+|||||+++++.      +.+...+.++.+ .....+.+.+  ..+.+||++|...+..++..+++.+|++
T Consensus         1 kv~vvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v   74 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLY------DTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAF   74 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEE
Confidence            689999999999999999998      666666666653 3344566666  6789999999999999989999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           96 VFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        96 v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      ++|||++++++++++..|+..+.....
T Consensus        75 ilv~d~~~~~s~~~~~~~~~~i~~~~~  101 (198)
T cd04147          75 ALVYAVDDPESFEEVERLREEILEVKE  101 (198)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999988876543

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=99.83  E-value=1.1e-19  Score=120.68  Aligned_cols=98  Identities=19%  Similarity=0.273  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchh--------hH
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRS--------IW   85 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~--------~~   85 (128)
                      +||+++|+++||||||++++..      +.++..+.|+.+...  ..+.+++  ..+.+||++|.+.+..        ..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~------~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~   74 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLA------QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPR   74 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHc------CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHH
Confidence            5899999999999999999998      777777778876442  3455667  6788999999654321        23


Q ss_pred             HHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        86 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ..+++.+|++++|||++++++|+++..|++++.+..
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~  110 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETR  110 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            345789999999999999999999999999887653

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.83  E-value=1.3e-19  Score=117.47  Aligned_cols=95  Identities=25%  Similarity=0.408  Sum_probs=80.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEEE
Q 033075           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVV   96 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~v   96 (128)
                      |+++|++++|||||++++..      +.+...+.++.+... ..+..++  ..+.+||++|++.+..++..+++.+|+++
T Consensus         1 i~i~G~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   74 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTT------NAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL   74 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHh------CCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEE
Confidence            58999999999999999998      777777777766543 3455555  57899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHH-HHHHHHhcC
Q 033075           97 FVIDAACPSRFEDSK-TALGKFFGM  120 (128)
Q Consensus        97 ~v~d~~~~~s~~~~~-~~l~~~~~~  120 (128)
                      +|||++++++|+++. .|+..+...
T Consensus        75 lv~d~~~~~s~~~~~~~~~~~i~~~   99 (174)
T smart00174       75 ICFSVDSPASFENVKEKWYPEVKHF   99 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999996 488877653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.82  E-value=4.2e-19  Score=114.95  Aligned_cols=100  Identities=38%  Similarity=0.697  Sum_probs=86.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      .+.++++++|++|+|||||++++..      ..+ ..+.++.|.+...+...+..+.+||++|...+...+..+++.+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~------~~~-~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLAS------EDI-SHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhc------CCC-cccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            4589999999999999999999987      333 245678888777888888999999999999888888999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +++|+|+++..++.....|+..+....
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~  111 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEE  111 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhCh
Confidence            999999999999999888888877654

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.82  E-value=1.9e-19  Score=115.87  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCcc-chhhHHHhhhccCE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPG-LRSIWEKYYEEAHA   94 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~~~   94 (128)
                      ||+++|++++|||||++++..      +.+.+.+.++.+.. ...+.+++  ..+.+||++|... .......+++.+|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~   74 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLT------KRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADG   74 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHh------CccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCE
Confidence            689999999999999999998      66666666666433 33455665  5688999999885 34456778899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++|||++++++|+.+..|+..+...
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~  100 (165)
T cd04146          75 FVLVYSITDRSSFDEISQLKQLIREI  100 (165)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.82  E-value=3.3e-19  Score=120.19  Aligned_cols=102  Identities=22%  Similarity=0.197  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcc--eEEEEEEECC--eEEEEEeCCCCccchhhHHHhhh-c
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE-E   91 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~-~   91 (128)
                      +||+++|++|+|||||++++..      +.+. ..+.++.+  .....+.+++  ..+.+||++|++  ......+++ +
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~------~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~   72 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTS------GEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQ   72 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhc------CCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcC
Confidence            5899999999999999999987      6654 55666664  3345556655  779999999998  334455667 9


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +|++++|||++++++|+.+..|+.++.......+.|
T Consensus        73 ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p  108 (221)
T cd04148          73 GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP  108 (221)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999887654333333

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04123 Rab21 Rab21 subfamily

Probab=99.82  E-value=4.1e-19  Score=113.41  Aligned_cols=97  Identities=23%  Similarity=0.406  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|++++|||||++++..      +.+.....++....  ...+.+.+  ..+.+||++|++.+..++..+++++|
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   74 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVE------NKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDAD   74 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCC
Confidence            5899999999999999999998      55544444454333  33444444  57999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++|||++++++++.+..|+.++...
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~  101 (162)
T cd04123          75 GAILVYDITDADSFQKVKKWIKELKQM  101 (162)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998887654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN03118 Rab family protein; Provisional

Probab=99.82  E-value=5.7e-19  Score=118.13  Aligned_cols=93  Identities=27%  Similarity=0.565  Sum_probs=78.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+ ..+.++.+...  ..+.+++  ..+.+||++|++.+..++..+++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   84 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFIS------SSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYR   84 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh------CCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh
Confidence            4578999999999999999999998      444 34567776543  4455655  67899999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHH
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTAL  114 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l  114 (128)
                      .+|++++|||++++++|+++..++
T Consensus        85 ~~d~~vlv~D~~~~~sf~~~~~~~  108 (211)
T PLN03118         85 NAQGIILVYDVTRRETFTNLSDVW  108 (211)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHH
Confidence            999999999999999999998744

>cd00154 Rab Rab family

Probab=99.82  E-value=2.7e-19  Score=113.38  Aligned_cols=98  Identities=30%  Similarity=0.506  Sum_probs=83.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE--EECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|++++|||||++++..      ......+.++.+.+....  ..++  ..+.+||+||.+.+...+..+++++|
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   74 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVD------GKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAH   74 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh------CcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCC
Confidence            5899999999999999999998      666666677777665443  3333  77899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++++|+|++++++++.+..|+..+....
T Consensus        75 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~  102 (159)
T cd00154          75 GAILVYDITNRESFENLDKWLKELKEYA  102 (159)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999998887654

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.82  E-value=3.2e-19  Score=119.61  Aligned_cols=100  Identities=18%  Similarity=0.413  Sum_probs=87.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE--CC--eEEEEEeCCCCccchhhHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      ....+|++++|++|||||||++++..      +.+...+.+|.+.+.....+  ++  ..+.+||++|++.+..++..++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~   79 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLT------GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYY   79 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHh
Confidence            35679999999999999999999888      77777888999887655443  33  7899999999999998999999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +.++++++|||++++.+|.++..|+.++..
T Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  109 (215)
T PTZ00132         80 IKGQCAIIMFDVTSRITYKNVPNWHRDIVR  109 (215)
T ss_pred             ccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988764

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.82  E-value=5e-19  Score=113.29  Aligned_cols=99  Identities=15%  Similarity=0.253  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +||+++|++|||||||++++..      +.+...+.++.+... .....++  ..+.+||++|+..+...+..+++.+++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   74 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEG   74 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCE
Confidence            5899999999999999999998      666666666655433 3344554  679999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +++|+|++++++|+++..|+..+.....
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~  102 (164)
T cd04139          75 FLLVFSITDMESFTATAEFREQILRVKD  102 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998887643

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.81  E-value=3.1e-19  Score=115.76  Aligned_cols=96  Identities=25%  Similarity=0.365  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      .||+++|+++||||||++++..      +.++..+.+|.+... ..+.+++  ..+.+||++|++.+...+..+++++|+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   75 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   75 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCE
Confidence            6899999999999999999998      777777778877553 4556665  578999999999998888888899999


Q ss_pred             EEEEEECCCcccHHHHHH-HHHHHhc
Q 033075           95 VVFVIDAACPSRFEDSKT-ALGKFFG  119 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~-~l~~~~~  119 (128)
                      +++|||++++++|+.+.. |+..+..
T Consensus        76 ~i~v~~~~~~~s~~~~~~~~~~~~~~  101 (175)
T cd01870          76 ILMCFSIDSPDSLENIPEKWTPEVKH  101 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999998864 7766654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01893 Miro1 Miro1 subfamily

Probab=99.81  E-value=5.2e-19  Score=114.13  Aligned_cols=96  Identities=18%  Similarity=0.211  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC--CeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +|++++|+++||||||++++..      +.++..+..+.+.......+.  +.++.+||++|...+...+..+++.+|++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~   74 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVS------EEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVI   74 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEE
Confidence            4899999999999999999998      666555443332222222333  37899999999998888778888999999


Q ss_pred             EEEEECCCcccHHHHH-HHHHHHhc
Q 033075           96 VFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        96 v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      ++|||++++++|+.+. .|+..+..
T Consensus        75 ilv~d~~~~~s~~~~~~~~~~~i~~   99 (166)
T cd01893          75 CLVYSVDRPSTLERIRTKWLPLIRR   99 (166)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999986 46665543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04135 Tc10 TC10 subfamily

Probab=99.81  E-value=3.6e-19  Score=115.38  Aligned_cols=96  Identities=21%  Similarity=0.298  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +||+++|++++|||||++++..      +.+...+.++.+... ..+.+++  ..+.+||++|++.+...+..+++.+|+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   74 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   74 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCE
Confidence            5899999999999999999998      777666777765432 3455665  568899999999999998999999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           95 VVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      +++|||++++++|+++. .|+..+..
T Consensus        75 ~ilv~~~~~~~s~~~~~~~~~~~l~~  100 (174)
T cd04135          75 FLICFSVVNPASFQNVKEEWVPELKE  100 (174)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999986 46666643

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.81  E-value=6.4e-19  Score=114.89  Aligned_cols=99  Identities=22%  Similarity=0.253  Sum_probs=84.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      .||+++|++|+|||||++++..      +.+...+.++.+.. ...+.+++  ..+.+||+||++++...+..++..+++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~   75 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE------GHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHG   75 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh------CCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCE
Confidence            5899999999999999999998      66666666766543 44555665  568999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      ++++||+++.++++.+..|+..+.+...
T Consensus        76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~  103 (180)
T cd04137          76 YILVYSVTSRKSFEVVKVIYDKILDMLG  103 (180)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998877543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04114 Rab30 Rab30 subfamily

Probab=99.81  E-value=1.2e-18  Score=112.40  Aligned_cols=99  Identities=30%  Similarity=0.540  Sum_probs=82.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...++++++|++|+|||||++++..      +.+...+.++.+..  ...+.+.+  ..+.+||++|++.+...+..+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   78 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYR   78 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc
Confidence            3568999999999999999999997      55555556666543  34456666  56889999999999998899999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        79 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~  107 (169)
T cd04114          79 SANALILTYDITCEESFRCLPEWLREIEQ  107 (169)
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999877643

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.80  E-value=5.2e-20  Score=115.67  Aligned_cols=99  Identities=21%  Similarity=0.371  Sum_probs=85.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc--eEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      -++|++++|..=+|||||+-++..      ++|..+...|+-  +....+.+.+  .++.|||+.|+++|..+=+.|+++
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~E------nkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg   85 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVE------NKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG   85 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHH------hhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence            478999999999999999999998      777777666543  3345555555  679999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +|++++|||++|++||+.++.|..++...
T Consensus        86 SnGalLVyDITDrdSFqKVKnWV~Elr~m  114 (218)
T KOG0088|consen   86 SNGALLVYDITDRDSFQKVKNWVLELRTM  114 (218)
T ss_pred             CCceEEEEeccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.80  E-value=3.9e-19  Score=108.73  Aligned_cols=93  Identities=29%  Similarity=0.486  Sum_probs=68.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCC----CCCcCCcceEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPP----DRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~----~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      ||+++|++|||||||++++..      ..+.    ..................  ..+.+||++|.+.+...+..++..+
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   74 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCG------GEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKA   74 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH------SS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHS
T ss_pred             CEEEECcCCCCHHHHHHHHhc------CCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcC
Confidence            799999999999999999998      3333    111111222222333333  5689999999998888777779999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHH
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      |++++|||++++++++++..++..+
T Consensus        75 d~~ilv~D~s~~~s~~~~~~~~~~l   99 (119)
T PF08477_consen   75 DAVILVYDLSDPESLEYLSQLLKWL   99 (119)
T ss_dssp             CEEEEEEECCGHHHHHHHHHHHHHH
T ss_pred             cEEEEEEcCCChHHHHHHHHHHHHH
Confidence            9999999999999999986654443

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.79  E-value=2.7e-18  Score=113.78  Aligned_cols=100  Identities=19%  Similarity=0.192  Sum_probs=73.9

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHHhhccCCCCCCCCCCcCCcce-E-EE-E--------EEECC--eEEEEEeCCCCccch
Q 033075           17 EFHVLILGIDKAGKTTLLE-KLKSVYSNVEGLPPDRIVPTVGL-N-IG-R--------IEVSN--SKLVFWDLGGQPGLR   82 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~-~l~~~~~~~~~~~~~~~~~t~~~-~-~~-~--------~~~~~--~~~~~~D~~g~~~~~   82 (128)
                      .+||+++|+++||||||+. ++.+.. -..+.+...+.||++. . +. .        ..+++  ..+.+||++|++.  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--   78 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--   78 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--
Confidence            5799999999999999996 554410 0113455677788852 1 11 1        13455  7899999999875  


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      .....+++++|++++|||+++++||+++. .|+.++..
T Consensus        79 ~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~  116 (195)
T cd01873          79 KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRH  116 (195)
T ss_pred             hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHH
Confidence            34556889999999999999999999997 58887754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd00876 Ras Ras family

Probab=99.79  E-value=3.2e-18  Score=109.07  Aligned_cols=98  Identities=19%  Similarity=0.289  Sum_probs=81.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      ||+++|+++||||||++++..      ..+...+.++.+.. .......+  ..+.+||++|...+...+..+++.+|++
T Consensus         1 ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   74 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK------GTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGF   74 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh------CCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEE
Confidence            689999999999999999998      55556666665532 33455554  6789999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           96 VFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        96 v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      ++|||++++++++++..|+..+.+...
T Consensus        75 i~v~d~~~~~s~~~~~~~~~~~~~~~~  101 (160)
T cd00876          75 ILVYSITDRESFEEIKGYREQILRVKD  101 (160)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999988876543

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00157 Rho Rho (Ras homology) family

Probab=99.78  E-value=6.6e-18  Score=108.92  Aligned_cols=97  Identities=27%  Similarity=0.412  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +||+++|++|+|||||++++..      +.+...+.++..... ......+  ..+.+||+||++.+......+++.+|+
T Consensus         1 iki~i~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~   74 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTT------GKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDV   74 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCE
Confidence            5899999999999999999998      655555555554332 3334444  679999999999888888888899999


Q ss_pred             EEEEEECCCcccHHHHHH-HHHHHhcC
Q 033075           95 VVFVIDAACPSRFEDSKT-ALGKFFGM  120 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~-~l~~~~~~  120 (128)
                      +++|||++++++|..+.. |+..+...
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~  101 (171)
T cd00157          75 FLICFSVDSPSSFENVKTKWIPEIRHY  101 (171)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999987754 66665543

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.76  E-value=6.3e-18  Score=113.31  Aligned_cols=100  Identities=32%  Similarity=0.464  Sum_probs=82.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE--C--CeEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--S--NSKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+||+++|++|||||||++++..      +.+...+.++++........  .  ...+.+||++|+++++.++..|+.+
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~   77 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVG------DEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRG   77 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhc------CcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcC
Confidence            348999999999999999999999      88888888887765433322  2  2679999999999999999999999


Q ss_pred             cCEEEEEEECCC-cccHHHHHHHHHHHhcCc
Q 033075           92 AHAVVFVIDAAC-PSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        92 ~~~~v~v~d~~~-~~s~~~~~~~l~~~~~~~  121 (128)
                      ++++++++|.++ ..+++....|..++....
T Consensus        78 ~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~  108 (219)
T COG1100          78 ANGILIVYDSTLRESSDELTEEWLEELRELA  108 (219)
T ss_pred             CCEEEEEEecccchhhhHHHHHHHHHHHHhC
Confidence            999999999999 555666677887776644

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.76  E-value=7.6e-19  Score=115.02  Aligned_cols=100  Identities=23%  Similarity=0.374  Sum_probs=87.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+|+++||+..+|||+|+..+..      +.|+..+.||+--++ ..+.++ +  +++.+|||.|+++|..+++..+.+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~------~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~   76 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTT------NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQ   76 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEecc------CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCC
Confidence            468999999999999999999998      899999999987554 566774 6  779999999999999988888999


Q ss_pred             cCEEEEEEECCCcccHHHHHH-HHHHHhcCc
Q 033075           92 AHAVVFVIDAACPSRFEDSKT-ALGKFFGMR  121 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~-~l~~~~~~~  121 (128)
                      +|++++||++.++.||+++++ |+.++....
T Consensus        77 tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c  107 (198)
T KOG0393|consen   77 TDVFLLCFSVVSPESFENVKSKWIPEIKHHC  107 (198)
T ss_pred             CCEEEEEEEcCChhhHHHHHhhhhHHHHhhC
Confidence            999999999999999999755 888876654

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=7.7e-18  Score=104.29  Aligned_cols=102  Identities=26%  Similarity=0.366  Sum_probs=89.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .-.+|-+++|+-|+|||+|++++..      .+|-.....|+|+..  ..+++.+  .++++||+.|+++|+.+...|++
T Consensus         9 syifkyiiigdmgvgkscllhqfte------kkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyr   82 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR   82 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHH------HHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence            3478999999999999999999998      777778888999875  4456666  77999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      .+.+.++|||+++++.+.++..|+.+..+..+
T Consensus        83 gaagalmvyditrrstynhlsswl~dar~ltn  114 (215)
T KOG0097|consen   83 GAAGALMVYDITRRSTYNHLSSWLTDARNLTN  114 (215)
T ss_pred             cccceeEEEEehhhhhhhhHHHHHhhhhccCC
Confidence            99999999999999999999999998765543

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.76  E-value=7.4e-18  Score=111.57  Aligned_cols=102  Identities=21%  Similarity=0.329  Sum_probs=91.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +.+|++++|.+|+|||+|..++..      +.|...+.||++..+ ..+.+++  ..+.++|++|++++..+...++++.
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~------~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~   75 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLT------GRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNG   75 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecc------cccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccC
Confidence            468999999999999999999999      999999999998654 5666666  7799999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCccc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMRIC  123 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~  123 (128)
                      +++++||+++++.||+.+..+++++.+....
T Consensus        76 ~gF~lVysitd~~SF~~~~~l~~~I~r~~~~  106 (196)
T KOG0395|consen   76 DGFLLVYSITDRSSFEEAKQLREQILRVKGR  106 (196)
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence            9999999999999999999999999554433

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.4e-18  Score=107.58  Aligned_cols=117  Identities=34%  Similarity=0.579  Sum_probs=102.9

Q ss_pred             ChhhhHHHHhhhhcc-ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075            1 MFSLFYGLWKYIFTK-TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (128)
Q Consensus         1 m~~~~~~~~~~~~~~-~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   79 (128)
                      |++...++|+.+... +..+++++|..|+|||+++.++.-      ++. ....|++|++.+.+.+++.++.+||.+|+.
T Consensus         1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqv------gev-vttkPtigfnve~v~yKNLk~~vwdLggqt   73 (182)
T KOG0072|consen    1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQV------GEV-VTTKPTIGFNVETVPYKNLKFQVWDLGGQT   73 (182)
T ss_pred             CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEccc------Ccc-cccCCCCCcCccccccccccceeeEccCcc
Confidence            677778888877765 899999999999999999998765      322 356799999999999999999999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~  124 (128)
                      ..+..|..|+.+.+++|+|+|.+|+++..-+...+..++.++.+.
T Consensus        74 SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq  118 (182)
T KOG0072|consen   74 SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQ  118 (182)
T ss_pred             cccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhc
Confidence            999999999999999999999999999988888888888776554

>cd04129 Rho2 Rho2 subfamily

Probab=99.75  E-value=3.3e-17  Score=107.74  Aligned_cols=97  Identities=25%  Similarity=0.387  Sum_probs=78.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +.|++++|++|+|||||++++..      +.+++.+.++..... ..+.+++  ..+.+||++|++.+......+++.++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~   74 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTL------GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAH   74 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCC
Confidence            35899999999999999999997      666666666655443 3445555  56889999999888777777889999


Q ss_pred             EEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           94 AVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      +++++||++++++|+++. .|+..+..
T Consensus        75 ~~llv~~i~~~~s~~~~~~~~~~~i~~  101 (187)
T cd04129          75 VILIGFAVDTPDSLENVRTKWIEEVRR  101 (187)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999997 58887754

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=3.2e-19  Score=112.23  Aligned_cols=100  Identities=23%  Similarity=0.426  Sum_probs=86.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC-----------eEEEEEeCCCCccchh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN-----------SKLVFWDLGGQPGLRS   83 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~-----------~~~~~~D~~g~~~~~~   83 (128)
                      .+|++.+|++|+||||++.+...      ++|..+...|+|++.  +.+.++.           .-+++||+.|+++|++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD------~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS   82 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTD------GKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS   82 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecC------CcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence            35778899999999999998888      888888888888764  3333321           4588999999999999


Q ss_pred             hHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +...+++++=+++++||++++.||.+++.|+.++..+..
T Consensus        83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY  121 (219)
T KOG0081|consen   83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY  121 (219)
T ss_pred             HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999876654

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.74  E-value=8.2e-19  Score=107.56  Aligned_cols=93  Identities=31%  Similarity=0.562  Sum_probs=78.4

Q ss_pred             EEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-CcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        21 ~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +++|++++|||+|+-++..      +.|... ..+|+|+++  ..++.++  +++++||+.|+++|++....|++++|++
T Consensus         1 mllgds~~gktcllir~kd------gafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~al   74 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKD------GAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADAL   74 (192)
T ss_pred             CccccCccCceEEEEEecc------CceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhccccee
Confidence            4789999999999888876      555433 346677654  4555666  7899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHhc
Q 033075           96 VFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        96 v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +++||++++.||++.+.|+.++-+
T Consensus        75 lllydiankasfdn~~~wlsei~e   98 (192)
T KOG0083|consen   75 LLLYDIANKASFDNCQAWLSEIHE   98 (192)
T ss_pred             eeeeecccchhHHHHHHHHHHHHH
Confidence            999999999999999999998754

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.73  E-value=6.3e-17  Score=107.81  Aligned_cols=95  Identities=26%  Similarity=0.400  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC----CeEEEEEeCCCCccchhhHHHhhhcc-C
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEA-H   93 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~-~   93 (128)
                      +|+++|+++||||||++++..      +.+...+.++ ..+.......    +..+.+||+||+.+++..+..+++.+ +
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~------~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~   74 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTT------GKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAK   74 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhc------CCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCC
Confidence            589999999999999999998      5555444333 3333333332    47899999999999999888999998 9


Q ss_pred             EEEEEEECCCc-ccHHHHHHHHHHHhcC
Q 033075           94 AVVFVIDAACP-SRFEDSKTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~-~s~~~~~~~l~~~~~~  120 (128)
                      ++|+|+|+++. +++..+.+|+.+++..
T Consensus        75 ~vV~VvD~~~~~~~~~~~~~~l~~il~~  102 (203)
T cd04105          75 GIVFVVDSATFQKNLKDVAEFLYDILTD  102 (203)
T ss_pred             EEEEEEECccchhHHHHHHHHHHHHHHH
Confidence            99999999997 7888988888887654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.2e-17  Score=105.53  Aligned_cols=107  Identities=32%  Similarity=0.549  Sum_probs=94.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      ++.-|++++|..|+|||||++.+..  +..     .++.||.....+.+.+.+.+++.+|.+|+..-+..|..|+..+|+
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKd--Drl-----~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~   90 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKD--DRL-----GQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDA   90 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHcc--ccc-----cccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhce
Confidence            4677999999999999999999986  222     355677777777888999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCcccccCCC
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMRICKERHF  128 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~~  128 (128)
                      +++.+|+.|.+.|.+.+..++.++....+++.|+
T Consensus        91 iv~lvda~d~er~~es~~eld~ll~~e~la~vp~  124 (193)
T KOG0077|consen   91 IVYLVDAYDQERFAESKKELDALLSDESLATVPF  124 (193)
T ss_pred             eEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcc
Confidence            9999999999999999999999998887777664

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.69  E-value=6e-18  Score=108.42  Aligned_cols=101  Identities=23%  Similarity=0.419  Sum_probs=89.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC--CeEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+|++++|..++||||++.+++.      +-|...+..|+|.+.  ..+.+.  +.++.+||++|+++|....+.|++
T Consensus        18 e~aiK~vivGng~VGKssmiqryCk------gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr   91 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR   91 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhc------cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            3578999999999999999999999      888889999998763  223333  377889999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++.+.++||+-+|+.||+.+.+|..++.++.
T Consensus        92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~  122 (246)
T KOG4252|consen   92 GAQASVLVFSTTDRYSFEATLEWYNKVQKET  122 (246)
T ss_pred             cccceEEEEecccHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999987764

>cd01898 Obg Obg subfamily

Probab=99.68  E-value=6.3e-16  Score=99.63  Aligned_cols=98  Identities=24%  Similarity=0.340  Sum_probs=68.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCe-EEEEEeCCCCc----cchhhHHHh---hh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQP----GLRSIWEKY---YE   90 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~----~~~~~~~~~---~~   90 (128)
                      +|+++|.++||||||++++.......    ......|....+..+.+++. .+.+||+||..    ..+.+...+   ++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v----~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKI----ADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIE   77 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccc----cCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence            58999999999999999998611110    01112233344445566665 99999999963    222233333   34


Q ss_pred             ccCEEEEEEECCCc-ccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACP-SRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~-~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|+|++++ ++++.+..|++++...
T Consensus        78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~  108 (170)
T cd01898          78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELY  108 (170)
T ss_pred             hCCEEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            69999999999999 7899988888887654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.67  E-value=2.4e-15  Score=94.86  Aligned_cols=97  Identities=25%  Similarity=0.303  Sum_probs=76.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|.+|+|||||++++..      +.++..+.++.+...  ..+..++  ..+.+||+||+..+..++..+++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   74 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLG------NKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAV   74 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC------CCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhh
Confidence            37999999999999999999998      555555555555543  3366777  7899999999999999999999999


Q ss_pred             CEEEEEEECCCc-ccHHHHH-HHHHHHhc
Q 033075           93 HAVVFVIDAACP-SRFEDSK-TALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~-~s~~~~~-~~l~~~~~  119 (128)
                      +.++.++|+... .++.+.. .|...+..
T Consensus        75 ~~~i~~~d~~~~v~~~~~~~~~~~~~~~~  103 (161)
T TIGR00231        75 ESSLRVFDIVILVLDVEEILEKQTKEIIH  103 (161)
T ss_pred             hEEEEEEEEeeeehhhhhHhHHHHHHHHH
Confidence            999999999887 6676665 55555543

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04171 SelB SelB subfamily

Probab=99.66  E-value=1.5e-15  Score=97.07  Aligned_cols=82  Identities=21%  Similarity=0.236  Sum_probs=61.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceEEEEEEEC-CeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      .|+++|.+++|||||++++...  +. +.++...  ..|.+.....+.+. +..+.+||+||++++......+++.+|++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~--~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~i   78 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGI--ET-DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLV   78 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCc--cc-ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence            5899999999999999999851  11 2222222  23444444556665 68999999999998877667778899999


Q ss_pred             EEEEECCC
Q 033075           96 VFVIDAAC  103 (128)
Q Consensus        96 v~v~d~~~  103 (128)
                      ++|+|+++
T Consensus        79 i~V~d~~~   86 (164)
T cd04171          79 LLVVAADE   86 (164)
T ss_pred             EEEEECCC
Confidence            99999987

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.66  E-value=3.1e-15  Score=106.29  Aligned_cols=100  Identities=23%  Similarity=0.299  Sum_probs=75.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE-CCeEEEEEeCCCCcc-------chhhHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPG-------LRSIWEKY   88 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~   88 (128)
                      ...|+++|.|+||||||++++......+    .+....|...+...+.+ ++.++.+||+||..+       +...+..+
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~v----a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrh  233 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKI----ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKH  233 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCcc----CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHH
Confidence            4579999999999999999998722221    12334566677777777 457899999999532       22334455


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++.++++++|+|+++.++++.+..|..++...
T Consensus       234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~  265 (335)
T PRK12299        234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKY  265 (335)
T ss_pred             hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHh
Confidence            67899999999999988899999998888654

>cd01878 HflX HflX subfamily

Probab=99.64  E-value=5e-15  Score=98.44  Aligned_cols=96  Identities=24%  Similarity=0.293  Sum_probs=69.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc---------ch
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG---------LR   82 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~---------~~   82 (128)
                      +..++|+++|++|||||||++++..      ...  .+...+|.......+.+++ ..+.+||+||...         +.
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~  112 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTG------ADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFR  112 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhc------chhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHH
Confidence            4568999999999999999999998      321  1223455555555666666 4899999999632         11


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      ..+ ..+..+|++++|+|++++.++..+..|...+
T Consensus       113 ~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l  146 (204)
T cd01878         113 STL-EEVAEADLLLHVVDASDPDYEEQIETVEKVL  146 (204)
T ss_pred             HHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHH
Confidence            121 2357899999999999998888776655544

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.63  E-value=8.1e-15  Score=104.81  Aligned_cols=93  Identities=24%  Similarity=0.340  Sum_probs=70.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEE-CCeEEEEEeCCCC-c--------cchh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQ-P--------GLRS   83 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~-~--------~~~~   83 (128)
                      ..++|+++|.+|+|||||+|++.+      ...  .+...+|.+.....+.+ ++.++.+|||+|. +        .|..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~------~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~  261 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTG------ADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRA  261 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC------CceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHH
Confidence            458999999999999999999998      322  23446677777777877 4589999999996 2        2222


Q ss_pred             hHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALG  115 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~  115 (128)
                      .+ ..+.++|++++|+|++++.+++.+..|..
T Consensus       262 tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~  292 (351)
T TIGR03156       262 TL-EEVREADLLLHVVDASDPDREEQIEAVEK  292 (351)
T ss_pred             HH-HHHHhCCEEEEEEECCCCchHHHHHHHHH
Confidence            22 24689999999999999988877755443

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.62  E-value=1.2e-14  Score=106.71  Aligned_cols=98  Identities=22%  Similarity=0.267  Sum_probs=72.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC-cCCcceEEEEEEECCeEEEEEeCCCCccchhh--------H
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------W   85 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~   85 (128)
                      +..++|+++|++|+|||||+++++.  .+.  .....+ ..|.......+.+++..+.+|||+|...+...        .
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~--~~~--aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~  276 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLK--QDR--AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKS  276 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhC--CCC--cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHH
Confidence            4678999999999999999999997  110  111122 22344445677888899999999998655432        2


Q ss_pred             HHhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        86 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      ..+++.+|++++|+|++++.+++..  |+.++.
T Consensus       277 ~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~  307 (442)
T TIGR00450       277 FKAIKQADLVIYVLDASQPLTKDDF--LIIDLN  307 (442)
T ss_pred             HHHHhhCCEEEEEEECCCCCChhHH--HHHHHh
Confidence            3567899999999999999888765  776664

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01890 LepA LepA subfamily

Probab=99.62  E-value=1.1e-14  Score=94.73  Aligned_cols=96  Identities=16%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCC-CCCCCCCcCC------cceEE----EEEEE-----CCeEEEEEeCCCCccch
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVE-GLPPDRIVPT------VGLNI----GRIEV-----SNSKLVFWDLGGQPGLR   82 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~-~~~~~~~~~t------~~~~~----~~~~~-----~~~~~~~~D~~g~~~~~   82 (128)
                      +|+++|.+++|||||++++........ ..+...+.++      .|...    ..+.+     .+..+.+||+||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            689999999999999999987211000 0111122222      12221    12222     23778999999999999


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL  114 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l  114 (128)
                      ..+..+++.+|++++|+|+++..+++....|.
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~  113 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY  113 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH
Confidence            99999999999999999999877766665554

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.62  E-value=4.5e-15  Score=92.64  Aligned_cols=89  Identities=30%  Similarity=0.499  Sum_probs=68.8

Q ss_pred             EEcCCCCCHHHHHHHHHhhccCCCCCC-CCCCcCCcceEEEEEEEC----CeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 033075           22 ILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEAHAVV   96 (128)
Q Consensus        22 l~G~~~~GKTsl~~~l~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v   96 (128)
                      ++|++|+|||||++++..      ... .....++. .+.......    +..+.+||++|...+......+++.+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~------~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   73 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLG------GEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGII   73 (157)
T ss_pred             CCCcCCCcHHHHHHHHHh------CCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEE
Confidence            589999999999999998      333 23333444 433333333    478999999999888887788889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHH
Q 033075           97 FVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        97 ~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      +|+|++++.+++.+..|+...
T Consensus        74 ~v~d~~~~~~~~~~~~~~~~~   94 (157)
T cd00882          74 LVYDVTDRESFENVKEWLLLI   94 (157)
T ss_pred             EEEECcCHHHHHHHHHHHHHH
Confidence            999999999999888874333

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.61  E-value=2.2e-14  Score=92.34  Aligned_cols=95  Identities=20%  Similarity=0.250  Sum_probs=65.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC--CCcCCcceEEEEEEECCeEEEEEeCCCCccc----h-----hhHHH
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----R-----SIWEK   87 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----~-----~~~~~   87 (128)
                      +|+++|.+++|||||++++..      ..+..  ....|.+........++.++.+||+||....    +     .....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   75 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTR------AKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA   75 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhc------CCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHH
Confidence            689999999999999999998      33321  1223555555566667789999999997321    0     11111


Q ss_pred             hhhccCEEEEEEECCCccc--HHHHHHHHHHHhc
Q 033075           88 YYEEAHAVVFVIDAACPSR--FEDSKTALGKFFG  119 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~~s--~~~~~~~l~~~~~  119 (128)
                      ....+|++++|+|++++++  ++....|+..+..
T Consensus        76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~  109 (168)
T cd01897          76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKP  109 (168)
T ss_pred             HHhccCcEEEEEeCCcccccchHHHHHHHHHHHh
Confidence            1233689999999998765  4666677777754

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.60  E-value=1.4e-15  Score=95.51  Aligned_cols=103  Identities=22%  Similarity=0.359  Sum_probs=88.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      +.-.+||.++|++..|||||+-...+      +++.+++..+.|++.  ..+.+.+  ..+.+||.+|++++..+.+...
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~------~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac   90 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQ------NEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIAC   90 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhc------chhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceee
Confidence            45688999999999999999999888      666567777888774  4555555  6788999999999999999999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      .++-+++|+||+++++.+..+++|+.+....++
T Consensus        91 ~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk  123 (205)
T KOG1673|consen   91 KDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK  123 (205)
T ss_pred             cCcEEEEEEEecCchHHHHHHHHHHHHHhccCC
Confidence            999999999999999999999999999876543

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.60  E-value=1.1e-14  Score=94.12  Aligned_cols=93  Identities=25%  Similarity=0.347  Sum_probs=67.2

Q ss_pred             EEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEEC-CeEEEEEeCCCCcc----chh---hHHHhhhc
Q 033075           22 ILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG----LRS---IWEKYYEE   91 (128)
Q Consensus        22 l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~---~~~~~~~~   91 (128)
                      ++|++|||||||++++..      ...  ......|...+...+.++ +.++.+||+||...    .+.   ....+++.
T Consensus         1 iiG~~~~GKStll~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   74 (176)
T cd01881           1 LVGLPNVGKSTLLNALTN------AKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRR   74 (176)
T ss_pred             CCCCCCCcHHHHHHHHhc------CCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhc
Confidence            589999999999999998      321  122234445555566677 78999999999632    112   22345678


Q ss_pred             cCEEEEEEECCCc------ccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACP------SRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~------~s~~~~~~~l~~~~~~  120 (128)
                      +|++++|+|+++.      ++++++..|..++...
T Consensus        75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (176)
T cd01881          75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLY  109 (176)
T ss_pred             cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHh
Confidence            9999999999998      5788888887777644

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.60  E-value=3.2e-14  Score=94.02  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=67.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--C------CCCcCCcceE----EEEEEECCeEEEEEeCCCCccchhhH
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--P------DRIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRSIW   85 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~------~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~~   85 (128)
                      -+|+++|.+++|||||+++++..........  .      .....+.|..    ...+...+..+.+||+||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999986211110000  0      0001122222    23455667899999999999999999


Q ss_pred             HHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        86 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      ..+++.+|++++|+|+++.. +.....++..+
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~  113 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKA  113 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHH
Confidence            99999999999999998742 33333444443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.59  E-value=3.5e-14  Score=104.55  Aligned_cols=97  Identities=25%  Similarity=0.264  Sum_probs=70.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh--------HH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WE   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~   86 (128)
                      +..++|+++|.+++|||||++++..  .+. ....+....|.+.....+.+++.++.+|||+|.+.+...        ..
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~--~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~  289 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLG--EER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSR  289 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhC--CCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence            3568999999999999999999987  110 001122234555556677788899999999998755432        23


Q ss_pred             HhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDSKTAL  114 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l  114 (128)
                      .+++.+|++++|+|++++.++++...|.
T Consensus       290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~  317 (449)
T PRK05291        290 EAIEEADLVLLVLDASEPLTEEDDEILE  317 (449)
T ss_pred             HHHHhCCEEEEEecCCCCCChhHHHHHH
Confidence            4678999999999999998887664444

>PRK15494 era GTPase Era; Provisional

Probab=99.59  E-value=2.4e-14  Score=102.08  Aligned_cols=94  Identities=21%  Similarity=0.358  Sum_probs=64.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc-chhhH-------
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-LRSIW-------   85 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~-------   85 (128)
                      +++..+|+++|.+|||||||++++..  .+.. ........|.+.....+..++.++.+|||||... +..+.       
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~--~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~  125 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIG--EKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCA  125 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhC--Ccee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHH
Confidence            35677999999999999999999997  2210 1112333455555566778889999999999743 22211       


Q ss_pred             HHhhhccCEEEEEEECCCcccHHHHHH
Q 033075           86 EKYYEEAHAVVFVIDAACPSRFEDSKT  112 (128)
Q Consensus        86 ~~~~~~~~~~v~v~d~~~~~s~~~~~~  112 (128)
                      ..+++++|++++|+|.++  ++..+..
T Consensus       126 ~~~l~~aDvil~VvD~~~--s~~~~~~  150 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLK--SFDDITH  150 (339)
T ss_pred             HHHhhhCCEEEEEEECCC--CCCHHHH
Confidence            134679999999999665  4545433

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.58  E-value=4.5e-14  Score=100.22  Aligned_cols=101  Identities=22%  Similarity=0.282  Sum_probs=72.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc-------chhhHHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEK   87 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~   87 (128)
                      ....|+++|.++||||||++++......+    .+....|...+...+.+++ .++.+||+||..+       ....+..
T Consensus       156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~v----a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flr  231 (329)
T TIGR02729       156 LLADVGLVGLPNAGKSTLISAVSAAKPKI----ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK  231 (329)
T ss_pred             ccccEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHH
Confidence            34689999999999999999999722211    1122345566666777777 8999999999642       2223344


Q ss_pred             hhhccCEEEEEEECCCc---ccHHHHHHHHHHHhcC
Q 033075           88 YYEEAHAVVFVIDAACP---SRFEDSKTALGKFFGM  120 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~---~s~~~~~~~l~~~~~~  120 (128)
                      +++.++++++|+|+++.   +.++.+..|..++...
T Consensus       232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~  267 (329)
T TIGR02729       232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKY  267 (329)
T ss_pred             HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHh
Confidence            45679999999999987   6778887787776543

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.58  E-value=4.4e-14  Score=90.76  Aligned_cols=81  Identities=19%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCc--CCcceEEEEEEEC---CeEEEEEeCCCCccchhhHHHhhhccC
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV--PTVGLNIGRIEVS---NSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .|+++|.+++|||||++++..      +.+.....  .+.......+...   +..+.+||+||+..+..++..++..+|
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d   75 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRK------TNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTD   75 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHh------cccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcC
Confidence            489999999999999999998      44433322  2222223344443   578999999999999888888899999


Q ss_pred             EEEEEEECCCcc
Q 033075           94 AVVFVIDAACPS  105 (128)
Q Consensus        94 ~~v~v~d~~~~~  105 (128)
                      ++++|+|+++..
T Consensus        76 ~il~v~d~~~~~   87 (168)
T cd01887          76 IAILVVAADDGV   87 (168)
T ss_pred             EEEEEEECCCCc
Confidence            999999999854

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.57  E-value=6.1e-15  Score=92.66  Aligned_cols=79  Identities=19%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc-----cchhhHHHhhhccC
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----GLRSIWEKYYEEAH   93 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~   93 (128)
                      ||+++|++++|||||++++..      ..+  .+.+|.+.     .+..   .+||+||..     .++.+.. .++++|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~------~~~--~~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad   64 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQG------EEI--LYKKTQAV-----EYND---GAIDTPGEYVENRRLYSALIV-TAADAD   64 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcC------Ccc--ccccceeE-----EEcC---eeecCchhhhhhHHHHHHHHH-HhhcCC
Confidence            899999999999999999987      332  23344332     2222   689999972     2333333 468999


Q ss_pred             EEEEEEECCCcccHHHHHHHHH
Q 033075           94 AVVFVIDAACPSRFEDSKTALG  115 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~  115 (128)
                      ++++|||++++.++... .|+.
T Consensus        65 ~vilv~d~~~~~s~~~~-~~~~   85 (142)
T TIGR02528        65 VIALVQSATDPESRFPP-GFAS   85 (142)
T ss_pred             EEEEEecCCCCCcCCCh-hHHH
Confidence            99999999999987652 4443

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.56  E-value=1e-13  Score=94.22  Aligned_cols=94  Identities=26%  Similarity=0.256  Sum_probs=66.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch-------hhHHHhhhc
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------SIWEKYYEE   91 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~   91 (128)
                      +++++|.+++|||||++++......    .......|.......+.+++.++++||+||.....       .....++++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~----v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~   77 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSE----VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVART   77 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcc----ccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence            7899999999999999999972211    11123345555566777889999999999964322       233456799


Q ss_pred             cCEEEEEEECCCcc-cHHHHHHHHHH
Q 033075           92 AHAVVFVIDAACPS-RFEDSKTALGK  116 (128)
Q Consensus        92 ~~~~v~v~d~~~~~-s~~~~~~~l~~  116 (128)
                      +|++++|+|+++++ +.+.+.+.++.
T Consensus        78 ad~il~V~D~t~~~~~~~~~~~~l~~  103 (233)
T cd01896          78 ADLILMVLDATKPEGHREILERELEG  103 (233)
T ss_pred             CCEEEEEecCCcchhHHHHHHHHHHH
Confidence            99999999998765 44555444443

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.55  E-value=2e-13  Score=86.53  Aligned_cols=94  Identities=26%  Similarity=0.249  Sum_probs=65.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh--------hHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYY   89 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~   89 (128)
                      ++|+++|++|+|||||++++......   ........+.......+.+.+.++.+||+||...+..        ....++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   78 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRA---IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI   78 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceE---eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence            58999999999999999999872110   0111222233333445566778999999999765432        123456


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHH
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTAL  114 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l  114 (128)
                      ..+|++++|+|++++.+....+.+.
T Consensus        79 ~~~~~~v~v~d~~~~~~~~~~~~~~  103 (157)
T cd04164          79 EEADLVLFVIDASRGLDEEDLEILE  103 (157)
T ss_pred             hhCCEEEEEEECCCCCCHHHHHHHH
Confidence            7999999999999988887765544

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.55  E-value=1.2e-13  Score=88.95  Aligned_cols=106  Identities=20%  Similarity=0.333  Sum_probs=83.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhcc---C---CCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCccchhhHH
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYS---N---VEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWE   86 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~---~---~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~   86 (128)
                      +-...||++.|+-++||||+++++.....   +   ...+.......|+..++..+.+++ ..+.++++||+++|+.+|.
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence            34678999999999999999999987321   0   011222233456777788888877 8999999999999999999


Q ss_pred             HhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+++++.++++++|.+++..+ ++.+.+..+...
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~  119 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR  119 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc
Confidence            999999999999999999888 665555554433

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.55  E-value=1.6e-13  Score=101.67  Aligned_cols=91  Identities=22%  Similarity=0.172  Sum_probs=64.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhhHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWE   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~   86 (128)
                      ....+|+++|.++||||||++++......   ........|.......+.+.+..+.+||+||.+.        +.....
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~---~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~  112 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREA---VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAE  112 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcc---cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence            34579999999999999999999971110   0111112233334456677788899999999652        334456


Q ss_pred             HhhhccCEEEEEEECCCcccHH
Q 033075           87 KYYEEAHAVVFVIDAACPSRFE  108 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~  108 (128)
                      .+++.+|++++|+|+++..++.
T Consensus       113 ~~~~~aD~il~VvD~~~~~s~~  134 (472)
T PRK03003        113 VAMRTADAVLFVVDATVGATAT  134 (472)
T ss_pred             HHHHhCCEEEEEEECCCCCCHH
Confidence            6789999999999999876653

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.54  E-value=5e-13  Score=81.44  Aligned_cols=82  Identities=22%  Similarity=0.306  Sum_probs=57.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc---------hhhHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKYY   89 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~   89 (128)
                      +|+++|.+|+|||||++.|++  .+. .........|.......+.+++..+.++|+||-..-         .......+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~--~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG--KKL-AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT--STS-SEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhc--ccc-ccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence            689999999999999999997  211 111222334455555667788899999999995421         11223334


Q ss_pred             hccCEEEEEEECCC
Q 033075           90 EEAHAVVFVIDAAC  103 (128)
Q Consensus        90 ~~~~~~v~v~d~~~  103 (128)
                      ..+|++++|+|.++
T Consensus        78 ~~~d~ii~vv~~~~   91 (116)
T PF01926_consen   78 SKSDLIIYVVDASN   91 (116)
T ss_dssp             CTESEEEEEEETTS
T ss_pred             HHCCEEEEEEECCC
Confidence            78999999999777

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.53  E-value=2.9e-13  Score=99.37  Aligned_cols=96  Identities=27%  Similarity=0.296  Sum_probs=67.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhhHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYY   89 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~   89 (128)
                      .+|+++|.+|||||||++++......   ...+....|.+.....+.+++..+.+|||||...        +......++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~---~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDA---IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce---eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            58999999999999999999871110   0111222344455667788889999999999876        333445677


Q ss_pred             hccCEEEEEEECCCcccH--HHHHHHHHH
Q 033075           90 EEAHAVVFVIDAACPSRF--EDSKTALGK  116 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~--~~~~~~l~~  116 (128)
                      ..+|++++|+|++++.+.  ..+..|+..
T Consensus        79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~  107 (435)
T PRK00093         79 EEADVILFVVDGRAGLTPADEEIAKILRK  107 (435)
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence            899999999999885443  344455554

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.52  E-value=1.6e-13  Score=87.24  Aligned_cols=81  Identities=25%  Similarity=0.286  Sum_probs=59.4

Q ss_pred             EEcCCCCCHHHHHHHHHhhccCCCCCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccchh------hHHHhhh--c
Q 033075           22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYYE--E   91 (128)
Q Consensus        22 l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--~   91 (128)
                      ++|.+++|||||++++.+      ......  ...|.......+.+++..+.+||+||...+..      +...++.  .
T Consensus         1 l~G~~~~GKssl~~~~~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTG------ARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhc------CcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCC
Confidence            589999999999999987      321111  22344455566777888999999999876653      3455664  8


Q ss_pred             cCEEEEEEECCCcccHH
Q 033075           92 AHAVVFVIDAACPSRFE  108 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~  108 (128)
                      +|++++|+|.++.++..
T Consensus        75 ~d~vi~v~d~~~~~~~~   91 (158)
T cd01879          75 PDLIVNVVDATNLERNL   91 (158)
T ss_pred             CcEEEEEeeCCcchhHH
Confidence            99999999999865543

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.52  E-value=2.9e-13  Score=88.34  Aligned_cols=90  Identities=23%  Similarity=0.222  Sum_probs=63.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCC-CC-----------CCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHH
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-LP-----------PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE   86 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~-~~-----------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   86 (128)
                      +|+++|.+++|||||++.+......... ..           ......+.......+...+..+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            4899999999999999999882111100 00           00011222233345556678899999999998888888


Q ss_pred             HhhhccCEEEEEEECCCcccHH
Q 033075           87 KYYEEAHAVVFVIDAACPSRFE  108 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~  108 (128)
                      .+++.+|++++|+|++++.+..
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~  102 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQ  102 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHH
Confidence            9999999999999998866543

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00436 era GTP-binding protein Era

Probab=99.52  E-value=3.4e-13  Score=93.48  Aligned_cols=87  Identities=22%  Similarity=0.257  Sum_probs=57.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch--------hhHHHhhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIWEKYYE   90 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~   90 (128)
                      +|+++|.+|||||||+|++.+  .+.. ........|..........++.++.+|||||.....        .....+++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~--~~~~-~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHG--QKIS-ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhC--CcEe-ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            689999999999999999998  2110 011111222222222333455789999999965321        12345678


Q ss_pred             ccCEEEEEEECCCcccHH
Q 033075           91 EAHAVVFVIDAACPSRFE  108 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~  108 (128)
                      .+|++++|+|+++..+.+
T Consensus        79 ~aDvvl~VvD~~~~~~~~   96 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG   96 (270)
T ss_pred             hCCEEEEEEECCCCCchH
Confidence            999999999999877764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.52  E-value=2.3e-13  Score=100.66  Aligned_cols=99  Identities=20%  Similarity=0.279  Sum_probs=69.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc----c---hhhHHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----L---RSIWEK   87 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----~---~~~~~~   87 (128)
                      +....|+|+|.++||||||+++|......+    .+....|...+...+.+.+.++.+||+||...    .   ......
T Consensus       157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI----adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLr  232 (500)
T PRK12296        157 KSVADVGLVGFPSAGKSSLISALSAAKPKI----ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLR  232 (500)
T ss_pred             cccceEEEEEcCCCCHHHHHHHHhcCCccc----cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHH
Confidence            345689999999999999999999732221    22345667777788888889999999999531    1   122334


Q ss_pred             hhhccCEEEEEEECCCc----ccHHHHHHHHHHH
Q 033075           88 YYEEAHAVVFVIDAACP----SRFEDSKTALGKF  117 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~----~s~~~~~~~l~~~  117 (128)
                      +++.|+++++|+|+++.    +.++....+..++
T Consensus       233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL  266 (500)
T PRK12296        233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAEL  266 (500)
T ss_pred             HHHhcCEEEEEECCcccccccCchhhHHHHHHHH
Confidence            56789999999999863    3444444444444

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.52  E-value=3.3e-13  Score=98.41  Aligned_cols=98  Identities=21%  Similarity=0.262  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC-CeEEEEEeCCCCcc----chhhHH---Hhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG----LRSIWE---KYY   89 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~~~---~~~   89 (128)
                      ..|+++|.++||||||++++++....+    .+....|...+...+.+. +.++.+||+||...    ...+..   .++
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kI----a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi  234 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKI----ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI  234 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCcc----ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH
Confidence            489999999999999999999822221    123345666666677776 68999999999532    222333   345


Q ss_pred             hccCEEEEEEECCCc---ccHHHHHHHHHHHhc
Q 033075           90 EEAHAVVFVIDAACP---SRFEDSKTALGKFFG  119 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~---~s~~~~~~~l~~~~~  119 (128)
                      +.++++++|+|+++.   +.++....|..++..
T Consensus       235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~  267 (424)
T PRK12297        235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKL  267 (424)
T ss_pred             hhCCEEEEEEeCCccccCChHHHHHHHHHHHhh
Confidence            679999999999865   667777777776654

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.52  E-value=4.4e-13  Score=84.16  Aligned_cols=107  Identities=24%  Similarity=0.365  Sum_probs=78.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC---eEEEEEeCCCCccc-hhhHHHhhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN---SKLVFWDLGGQPGL-RSIWEKYYE   90 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~---~~~~~~D~~g~~~~-~~~~~~~~~   90 (128)
                      +..|++++|..++|||+|+.+++.  .+  ...-.+..+|+... ...++-+.   ..+.++||.|.+.+ ..+-..|+.
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~y--g~--~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q   83 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLY--GN--HVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ   83 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHh--cc--CCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence            567999999999999999999998  22  11223455666543 34444333   67999999998877 456678889


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      -+|++++|||..|++||+.+...-.+|-.....++.
T Consensus        84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEv  119 (198)
T KOG3883|consen   84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEV  119 (198)
T ss_pred             cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccc
Confidence            999999999999999998876655555554444433

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.52  E-value=2.4e-13  Score=92.04  Aligned_cols=81  Identities=22%  Similarity=0.472  Sum_probs=58.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECC-eEEEEEeCCCCccchh-----hHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRS-----IWEKYY   89 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~-----~~~~~~   89 (128)
                      ||+++|+++|||||+.+.+..      +..|.   ...+|..++...+...+ ..+.+||.||+..+-.     .....+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~------~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if   74 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFH------KYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF   74 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---------GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHc------CCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH
Confidence            799999999999999999987      32222   23477777777776554 8999999999875533     356678


Q ss_pred             hccCEEEEEEECCCcc
Q 033075           90 EEAHAVVFVIDAACPS  105 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~  105 (128)
                      +++.++|+|+|+.+.+
T Consensus        75 ~~v~~LIyV~D~qs~~   90 (232)
T PF04670_consen   75 SNVGVLIYVFDAQSDD   90 (232)
T ss_dssp             CTESEEEEEEETT-ST
T ss_pred             hccCEEEEEEEccccc
Confidence            9999999999999655

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.51  E-value=3e-13  Score=88.32  Aligned_cols=93  Identities=24%  Similarity=0.304  Sum_probs=61.0

Q ss_pred             hhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCCCc---------
Q 033075           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQP---------   79 (128)
Q Consensus        11 ~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~---------   79 (128)
                      .+.+.+..+|+++|.+++|||||++++..      ..+...+.++.+..  ...+..+ .++.+||+||..         
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~------~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~   84 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTN------RKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEK   84 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhC------CCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHH
Confidence            34557889999999999999999999997      33222333333322  1222233 379999999942         


Q ss_pred             -cchhhHHHhhhc---cCEEEEEEECCCcccHHHH
Q 033075           80 -GLRSIWEKYYEE---AHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        80 -~~~~~~~~~~~~---~~~~v~v~d~~~~~s~~~~  110 (128)
                       .+..+...+++.   ++++++|+|.+++-+..+.
T Consensus        85 ~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~  119 (179)
T TIGR03598        85 EKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL  119 (179)
T ss_pred             HHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH
Confidence             233334455553   5799999999876554443

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK04213 GTP-binding protein; Provisional

Probab=99.50  E-value=6.3e-14  Score=92.92  Aligned_cols=82  Identities=22%  Similarity=0.302  Sum_probs=55.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC-----------Cccchh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRS   83 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~   83 (128)
                      ...++|+++|.+|+|||||++++..      ..+.....+........+.+.  ++.+||+||           ++.++.
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTG------KKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC------CCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHH
Confidence            3578999999999999999999987      443333333333323333333  689999999           455666


Q ss_pred             hHHHhhh----ccCEEEEEEECCCc
Q 033075           84 IWEKYYE----EAHAVVFVIDAACP  104 (128)
Q Consensus        84 ~~~~~~~----~~~~~v~v~d~~~~  104 (128)
                      .+..++.    .++++++|+|.++.
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~  103 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSF  103 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccc
Confidence            6655654    35677888887653

>PRK11058 GTPase HflX; Provisional

Probab=99.49  E-value=6e-13  Score=97.35  Aligned_cols=96  Identities=25%  Similarity=0.345  Sum_probs=68.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc--chhhHH------Hh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG--LRSIWE------KY   88 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~--~~~~~~------~~   88 (128)
                      .+|+++|.+|||||||+|++..  .+.  ...+....|.+.....+.+++ ..+.+|||+|..+  ....+.      ..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~--~~~--~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~  273 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITE--ARV--YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQE  273 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC--Cce--eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            5899999999999999999987  211  111233456666666777776 4889999999732  122222      33


Q ss_pred             hhccCEEEEEEECCCcccHHHHH---HHHHHH
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSK---TALGKF  117 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~---~~l~~~  117 (128)
                      ++.+|++++|+|++++.+++.+.   .++.++
T Consensus       274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el  305 (426)
T PRK11058        274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEI  305 (426)
T ss_pred             hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh
Confidence            58899999999999998877764   445544

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.49  E-value=5.7e-13  Score=98.79  Aligned_cols=99  Identities=26%  Similarity=0.277  Sum_probs=67.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc----------cchhhH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLRSIW   85 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~   85 (128)
                      ...+|+++|.+++|||||+++++.  .+. .........|.+.....+.+++..+.+|||+|..          .+..+.
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~--~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAG--EER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC--CCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH
Confidence            358999999999999999999997  110 0011122223333345667788889999999952          222222


Q ss_pred             -HHhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           86 -EKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        86 -~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                       ..+++.+|++++|+|++++.++..+. ++..+.
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~  319 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI  319 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH
Confidence             24578999999999999988887763 444443

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.49  E-value=9.7e-14  Score=90.46  Aligned_cols=98  Identities=28%  Similarity=0.409  Sum_probs=67.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE---CCeEEEEEeCCCCccchhhHHH---hhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEK---YYE   90 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~---~~~   90 (128)
                      .-.++++|+.|+|||+|+.+|..      ++..+...+. ..+. ...+   .+..+.+.|+||+.+.+.....   +..
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~------~~~~~T~tS~-e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~   74 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVN------GKTVPTVTSM-ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLS   74 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHH------SS---B---S-SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHG
T ss_pred             CceEEEEcCCCCCHHHHHHHHhc------CCcCCeeccc-cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchh
Confidence            44689999999999999999999      5444443333 2222 2223   3368999999999998875444   478


Q ss_pred             ccCEEEEEEECCC-cccHHHHHHHHHHHhcCcc
Q 033075           91 EAHAVVFVIDAAC-PSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        91 ~~~~~v~v~d~~~-~~s~~~~~~~l~~~~~~~~  122 (128)
                      .+.++|||+|.+. ...+.++.+++.+++....
T Consensus        75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~  107 (181)
T PF09439_consen   75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTE  107 (181)
T ss_dssp             GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhh
Confidence            9999999999874 5667888888888876544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.48  E-value=4.2e-13  Score=85.71  Aligned_cols=85  Identities=25%  Similarity=0.396  Sum_probs=57.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc------hhhHHHhh--
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL------RSIWEKYY--   89 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--   89 (128)
                      ++|+++|.|++|||||+|++.+..... +   +....|.......+.+.+..+.++|+||...+      +.+...++  
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v-~---n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~   76 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKV-G---NWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS   76 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEE-E---ESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcee-c---CCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence            589999999999999999999833222 1   12223455556778888999999999994332      23444444  


Q ss_pred             hccCEEEEEEECCCccc
Q 033075           90 EEAHAVVFVIDAACPSR  106 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s  106 (128)
                      ...|+++.|+|.++.++
T Consensus        77 ~~~D~ii~VvDa~~l~r   93 (156)
T PF02421_consen   77 EKPDLIIVVVDATNLER   93 (156)
T ss_dssp             TSSSEEEEEEEGGGHHH
T ss_pred             cCCCEEEEECCCCCHHH
Confidence            58999999999987543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01894 EngA1 EngA1 subfamily

Probab=99.48  E-value=6.5e-13  Score=84.19  Aligned_cols=85  Identities=25%  Similarity=0.253  Sum_probs=59.0

Q ss_pred             EEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh--------hHHHhhhcc
Q 033075           21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYYEEA   92 (128)
Q Consensus        21 ~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~   92 (128)
                      +++|.+|+|||||++++.......   .......|...........+..+.+||+||...+..        ....+++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAI---VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEe---ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            479999999999999998721100   011112233344456667788999999999877543        334567889


Q ss_pred             CEEEEEEECCCcccHH
Q 033075           93 HAVVFVIDAACPSRFE  108 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~  108 (128)
                      |++++|+|..+..+..
T Consensus        78 d~ii~v~d~~~~~~~~   93 (157)
T cd01894          78 DVILFVVDGREGLTPA   93 (157)
T ss_pred             CEEEEEEeccccCCcc
Confidence            9999999998765443

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.47  E-value=1.2e-12  Score=95.88  Aligned_cols=95  Identities=27%  Similarity=0.316  Sum_probs=65.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCC--------ccchhhHHHhhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PGLRSIWEKYYE   90 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~   90 (128)
                      +|+++|.+|||||||++++..  ... ....+....|.+.....+.+++..+.+|||||.        +.+......+++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~--~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~   77 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTG--KRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIE   77 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhC--CCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence            589999999999999999987  110 001112223444456677788899999999996        334445566789


Q ss_pred             ccCEEEEEEECCCcccHH--HHHHHHHH
Q 033075           91 EAHAVVFVIDAACPSRFE--DSKTALGK  116 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~--~~~~~l~~  116 (128)
                      .+|++++|+|..+.-+..  .+..|+.+
T Consensus        78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~  105 (429)
T TIGR03594        78 EADVILFVVDGREGLTPEDEEIAKWLRK  105 (429)
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999998754433  34445443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.47  E-value=1.3e-12  Score=94.60  Aligned_cols=98  Identities=22%  Similarity=0.319  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc-------chhhHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY   89 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~   89 (128)
                      ..|+++|.|+||||||+|++......    .......|.......+.+.+ .++.++|+||...       .......++
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~----vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i  235 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPK----VADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL  235 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCccc----ccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence            37999999999999999999972221    12234456666666777765 5799999999643       112223457


Q ss_pred             hccCEEEEEEECC---CcccHHHHHHHHHHHhc
Q 033075           90 EEAHAVVFVIDAA---CPSRFEDSKTALGKFFG  119 (128)
Q Consensus        90 ~~~~~~v~v~d~~---~~~s~~~~~~~l~~~~~  119 (128)
                      +.++++++|+|++   +.+.++....|+.++..
T Consensus       236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~  268 (390)
T PRK12298        236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEK  268 (390)
T ss_pred             HhCCEEEEEeccCcccccChHHHHHHHHHHHHh
Confidence            8999999999998   55677777777777765

>cd01889 SelB_euk SelB subfamily

Probab=99.47  E-value=6.3e-13  Score=87.71  Aligned_cols=92  Identities=22%  Similarity=0.210  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhcc-CCCCCCCC--CCcCCcceEEEEEEEC--------------CeEEEEEeCCCCcc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPD--RIVPTVGLNIGRIEVS--------------NSKLVFWDLGGQPG   80 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~-~~~~~~~~--~~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~   80 (128)
                      ++|+++|..++|||||++++...-. ........  ....|.+.......+.              +..+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            5799999999999999999986200 00000000  1123444443444443              57899999999976


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHH
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFED  109 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~  109 (128)
                      +..........+|++++|+|+++......
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~  109 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQT  109 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHH
Confidence            54444444567899999999988554433

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.46  E-value=1.5e-12  Score=85.81  Aligned_cols=88  Identities=26%  Similarity=0.332  Sum_probs=58.7

Q ss_pred             hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECCeEEEEEeCCCC----------cc
Q 033075           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQ----------PG   80 (128)
Q Consensus        13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~----------~~   80 (128)
                      ......+|+++|.+|+|||||++++..      ..+...+.++.+...  ..... +.++.+||+||.          +.
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~------~~~~~~~~~~~~~t~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~   92 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTN------RKNLARTSKTPGRTQLINFFEV-NDKLRLVDLPGYGYAKVSKEEKEK   92 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhC------CCCcccccCCCCceeEEEEEec-CCeEEEeCCCCCCCcCCCchHHHH
Confidence            345678999999999999999999997      433333444444321  11122 478999999994          33


Q ss_pred             chhhHHHhhhcc---CEEEEEEECCCcccH
Q 033075           81 LRSIWEKYYEEA---HAVVFVIDAACPSRF  107 (128)
Q Consensus        81 ~~~~~~~~~~~~---~~~v~v~d~~~~~s~  107 (128)
                      +......+++.+   +++++++|.+++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~  122 (196)
T PRK00454         93 WQKLIEEYLRTRENLKGVVLLIDSRHPLKE  122 (196)
T ss_pred             HHHHHHHHHHhCccceEEEEEEecCCCCCH
Confidence            444555566544   678888998876544

>cd01895 EngA2 EngA2 subfamily

Probab=99.45  E-value=3.2e-12  Score=82.04  Aligned_cols=91  Identities=23%  Similarity=0.157  Sum_probs=60.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc----------hh-hH
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------RS-IW   85 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~-~~   85 (128)
                      .++|+++|.+++|||||++++.......   .......+.......+...+..+.+||+||....          .. ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVI---VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccee---ccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHH
Confidence            5789999999999999999998721110   0111112222223455667788999999996433          11 11


Q ss_pred             HHhhhccCEEEEEEECCCcccHHHH
Q 033075           86 EKYYEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        86 ~~~~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                      ..+++.+|++++|+|++++.+....
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~  103 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDL  103 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHH
Confidence            2345789999999999998776543

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PTZ00099 rab6; Provisional

Probab=99.44  E-value=7.9e-13  Score=86.32  Aligned_cols=76  Identities=21%  Similarity=0.411  Sum_probs=65.8

Q ss_pred             CCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           46 GLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        46 ~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +.|.+.+.+|+|.++.  .+.+++  .++.+||++|++++..++..+++++|++++|||++++++|+.+..|+.++....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            5677788899997753  345555  789999999999999999999999999999999999999999999999987653

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.44  E-value=3e-12  Score=87.21  Aligned_cols=98  Identities=20%  Similarity=0.191  Sum_probs=69.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------CCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   84 (128)
                      +|+++|..++|||||+++++.......  +      ...+      ....++......+.+++.++.+||+||..+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            479999999999999999987322110  0      0000      1111233334566778899999999999999888


Q ss_pred             HHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      +..+++.+|++++|+|+++..+. ....++..+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~  112 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLL  112 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHH
Confidence            88999999999999999986543 333444443

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=4.1e-13  Score=86.85  Aligned_cols=100  Identities=17%  Similarity=0.368  Sum_probs=89.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC----eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN----SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..++++++|+.+.||||+.++.+.      +++...+.+|+|.......+..    .++..||+.|++.+..+...|+-.
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~lt------geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~   82 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLT------GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQ   82 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhc------ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEe
Confidence            478999999999999999999999      9999999999998866554432    789999999999999998989889


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ..+.+++||++.+-.+.++..|-.++.+..
T Consensus        83 ~qcAiimFdVtsr~t~~n~~rwhrd~~rv~  112 (216)
T KOG0096|consen   83 GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR  112 (216)
T ss_pred             cceeEEEeeeeehhhhhcchHHHHHHHHHh
Confidence            999999999999999999999999887654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.43  E-value=3.4e-12  Score=93.54  Aligned_cols=92  Identities=23%  Similarity=0.181  Sum_probs=63.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh-----------
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-----------   84 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------   84 (128)
                      ..++++++|.+++|||||+++++.  .+. .........|.......+..++..+.+||+||..+....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~--~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLG--EER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC--CCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence            358999999999999999999987  110 001112222333334556677789999999996543221           


Q ss_pred             HHHhhhccCEEEEEEECCCcccHHHH
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                      ...+++.+|++++|+|++++.+....
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~  273 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDL  273 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHH
Confidence            12467899999999999988776654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>smart00275 G_alpha G protein alpha subunit

Probab=99.41  E-value=2.3e-12  Score=92.02  Aligned_cols=73  Identities=19%  Similarity=0.374  Sum_probs=64.6

Q ss_pred             CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC----------cccHHHHHHHHHHHhcCcccc
Q 033075           55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~l~~~~~~~~~~  124 (128)
                      |.|++...+.+++..+.+||++|+...+..|..++.++++++||+|+++          ...+.+....++.+++++...
T Consensus       171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~  250 (342)
T smart00275      171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA  250 (342)
T ss_pred             ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence            6777777888888999999999999999999999999999999999997          346888889999999988777


Q ss_pred             cCC
Q 033075          125 ERH  127 (128)
Q Consensus       125 ~~~  127 (128)
                      +.|
T Consensus       251 ~~p  253 (342)
T smart00275      251 NTS  253 (342)
T ss_pred             CCc
Confidence            665

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.41  E-value=4.5e-12  Score=95.91  Aligned_cols=85  Identities=21%  Similarity=0.241  Sum_probs=64.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECC-eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+..+|+++|..++|||||++++..      ..+.....+  |.......+.+++ ..+.+|||||++.|..++...+..
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~------~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~  158 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRK------TKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKV  158 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh------CCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhcc
Confidence            3567999999999999999999987      333333222  2222223455544 489999999999999999988999


Q ss_pred             cCEEEEEEECCCcc
Q 033075           92 AHAVVFVIDAACPS  105 (128)
Q Consensus        92 ~~~~v~v~d~~~~~  105 (128)
                      +|++++|+|+++..
T Consensus       159 aDiaILVVda~dgv  172 (587)
T TIGR00487       159 TDIVVLVVAADDGV  172 (587)
T ss_pred             CCEEEEEEECCCCC
Confidence            99999999988743

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.41  E-value=3e-12  Score=85.59  Aligned_cols=87  Identities=16%  Similarity=0.108  Sum_probs=60.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCC-------------------------CCC--CCCcCCcceEEEEEEECCeEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPP--DRIVPTVGLNIGRIEVSNSKLV   71 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~-------------------------~~~--~~~~~t~~~~~~~~~~~~~~~~   71 (128)
                      +|+++|.+++|||||+++|+....-+..                         ..+  .+...|.......+..++.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            5899999999999999999762221100                         000  0011233333445566778999


Q ss_pred             EEeCCCCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075           72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        72 ~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      +||+||..+|.......++.+|++++|+|+++..
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~  114 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV  114 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc
Confidence            9999999887666666789999999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.41  E-value=4.9e-12  Score=95.97  Aligned_cols=100  Identities=15%  Similarity=0.155  Sum_probs=70.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCC-CCCCCCcC------CcceEE----EEEEE---CC--eEEEEEeCCCCcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRIVP------TVGLNI----GRIEV---SN--SKLVFWDLGGQPG   80 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~-~~~~~~~~------t~~~~~----~~~~~---~~--~~~~~~D~~g~~~   80 (128)
                      .-+++++|..++|||||+++++....-... .+...+..      ..|..+    ..+.+   ++  +.+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            348999999999999999999873211100 11112211      123332    22333   22  7899999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHH
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK  116 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~  116 (128)
                      |...+..+++.+|++++|+|+++..+.+....|...
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~  118 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLA  118 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHH
Confidence            999999999999999999999998777766665543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.40  E-value=5.1e-12  Score=83.72  Aligned_cols=100  Identities=15%  Similarity=0.099  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch-------hhH----H
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------SIW----E   86 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~----~   86 (128)
                      ++|+++|.+|+||||++|.++.  .+...........|.........+++.++.++||||-....       ...    .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg--~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILG--REVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhC--CCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            4799999999999999999997  22111111122344555556667788999999999954331       111    1


Q ss_pred             HhhhccCEEEEEEECCCc-ccHHHHHHHHHHHhc
Q 033075           87 KYYEEAHAVVFVIDAACP-SRFEDSKTALGKFFG  119 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~-~s~~~~~~~l~~~~~  119 (128)
                      ....+.|++++|+++.+. .....+.+++.+++.
T Consensus        79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg  112 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFG  112 (196)
T ss_pred             hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhC
Confidence            123568999999998862 223344555655543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04163 Era Era subfamily

Probab=99.40  E-value=9.1e-12  Score=79.24  Aligned_cols=86  Identities=23%  Similarity=0.255  Sum_probs=55.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh--------hHHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEK   87 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~   87 (128)
                      ...+|+++|++|+|||||++++...  +... .......+...........+..+.+||+||......        ....
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   78 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQ--KISI-VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS   78 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCC--ceEe-ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence            3578999999999999999999871  1100 000111111111223334457899999999654322        2344


Q ss_pred             hhhccCEEEEEEECCCc
Q 033075           88 YYEEAHAVVFVIDAACP  104 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~  104 (128)
                      .+..+|++++|+|.+++
T Consensus        79 ~~~~~d~i~~v~d~~~~   95 (168)
T cd04163          79 ALKDVDLVLFVVDASEP   95 (168)
T ss_pred             HHHhCCEEEEEEECCCc
Confidence            57889999999999986

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04169 RF3 RF3 subfamily

Probab=99.40  E-value=1.2e-11  Score=85.73  Aligned_cols=89  Identities=24%  Similarity=0.199  Sum_probs=63.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCC--CCC---------CCCC-------cCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVE--GLP---------PDRI-------VPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~---------~~~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~   79 (128)
                      -+|+++|.+++|||||+++++.....+.  +..         ...+       ..++......+++.+..+.+||+||..
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            4699999999999999999986321110  100         0000       112223344677788999999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCccc
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      +|......+++.+|++++|+|.++...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~  109 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVE  109 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCcc
Confidence            888777778899999999999987543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.40  E-value=3.4e-12  Score=96.54  Aligned_cols=92  Identities=25%  Similarity=0.314  Sum_probs=63.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE----------------CCeEEEEEeCCCCcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----------------SNSKLVFWDLGGQPG   80 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~   80 (128)
                      .--|+++|.+++|||||++++..  .......+.....++|........                ....+.+|||||++.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~--~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~   81 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRG--SAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA   81 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc--cccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence            34589999999999999999987  222112222233344433222111                012488999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCC---cccHHHH
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAAC---PSRFEDS  110 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~  110 (128)
                      |..++..+++.+|++++|+|+++   +.+++.+
T Consensus        82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i  114 (590)
T TIGR00491        82 FTNLRKRGGALADLAILIVDINEGFKPQTQEAL  114 (590)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH
Confidence            99999999999999999999997   4455544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd00066 G-alpha G protein alpha subunit

Probab=99.40  E-value=3.8e-12  Score=90.12  Aligned_cols=73  Identities=23%  Similarity=0.447  Sum_probs=63.9

Q ss_pred             CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc----------ccHHHHHHHHHHHhcCcccc
Q 033075           55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~l~~~~~~~~~~  124 (128)
                      |.|+....+.+++..+.+||++|++..+..|..++.++++++||+|+++-          ..+.+....++.+++++...
T Consensus       148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~  227 (317)
T cd00066         148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA  227 (317)
T ss_pred             cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence            66777777888889999999999999999999999999999999999973          56888888999999887776


Q ss_pred             cCC
Q 033075          125 ERH  127 (128)
Q Consensus       125 ~~~  127 (128)
                      +.|
T Consensus       228 ~~p  230 (317)
T cd00066         228 NTS  230 (317)
T ss_pred             CCC
Confidence            665

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd04167 Snu114p Snu114p subfamily

Probab=99.39  E-value=1.2e-11  Score=82.96  Aligned_cols=98  Identities=17%  Similarity=0.112  Sum_probs=64.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCC----C-----CCCC--CcCCcceE----EEEEEEC-----CeEEEEEeCCCC
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG----L-----PPDR--IVPTVGLN----IGRIEVS-----NSKLVFWDLGGQ   78 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~----~-----~~~~--~~~t~~~~----~~~~~~~-----~~~~~~~D~~g~   78 (128)
                      +|+++|..++|||||+.+++........    .     ..+.  .....+..    ...+.+.     ...+.+||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999873221100    0     0000  00111111    1122221     278999999999


Q ss_pred             ccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      .++......++..+|++++|+|+++..+... ..++...
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~  119 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHA  119 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHH
Confidence            9998888888999999999999988766543 3444444

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.39  E-value=8.6e-12  Score=86.36  Aligned_cols=90  Identities=20%  Similarity=0.258  Sum_probs=65.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCC------------CCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   84 (128)
                      +|+++|.+|+|||||+++++.......  +....            ....++......+.+++.++.+||+||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            489999999999999999976221110  00000            0122333344567778899999999999888778


Q ss_pred             HHHhhhccCEEEEEEECCCcccHH
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFE  108 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~  108 (128)
                      ...+++.+|++++|+|.++.....
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~  104 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVG  104 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHH
Confidence            888999999999999999876554

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.39  E-value=7.7e-12  Score=96.34  Aligned_cols=85  Identities=26%  Similarity=0.311  Sum_probs=63.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC----cCCcceEEEEEEEC--CeEEEEEeCCCCccchhhHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI----VPTVGLNIGRIEVS--NSKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      .+...|+++|..++|||||++++..      ..+....    ....+.....+...  +..+.+||+||++.|..++..+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~------~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg  315 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRK------TQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRG  315 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHh------ccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHH
Confidence            4567999999999999999999987      3222211    11223222233332  3889999999999999999999


Q ss_pred             hhccCEEEEEEECCCcc
Q 033075           89 YEEAHAVVFVIDAACPS  105 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~  105 (128)
                      ++.+|++++|+|+++..
T Consensus       316 ~~~aDiaILVVDA~dGv  332 (742)
T CHL00189        316 ANVTDIAILIIAADDGV  332 (742)
T ss_pred             HHHCCEEEEEEECcCCC
Confidence            99999999999988743

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.37  E-value=1.3e-11  Score=95.72  Aligned_cols=84  Identities=21%  Similarity=0.256  Sum_probs=65.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+...|+++|..++|||||+++|..      +.+......  |.......+.+++..+.+|||||++.|..++...++.+
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~------~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~a  361 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRK------TNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVT  361 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh------CCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhC
Confidence            4677899999999999999999987      222222111  11122245666788999999999999999999889999


Q ss_pred             CEEEEEEECCCc
Q 033075           93 HAVVFVIDAACP  104 (128)
Q Consensus        93 ~~~v~v~d~~~~  104 (128)
                      |++++|||+++.
T Consensus       362 DiaILVVdAddG  373 (787)
T PRK05306        362 DIVVLVVAADDG  373 (787)
T ss_pred             CEEEEEEECCCC
Confidence            999999999874

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.37  E-value=9.2e-12  Score=96.34  Aligned_cols=91  Identities=22%  Similarity=0.264  Sum_probs=64.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-CcCCcceEEEEEEECCeEEEEEeCCCCcc----------chhhH
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNIGRIEVSNSKLVFWDLGGQPG----------LRSIW   85 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~   85 (128)
                      ..+|+++|.++||||||+++++.  .+.  ..... ...|.+.....+.+++.++.+|||+|..+          +..+.
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~--~~~--~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTH--EER--AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC--ccc--cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHH
Confidence            47999999999999999999997  210  01122 22334444456677888899999999531          22221


Q ss_pred             -HHhhhccCEEEEEEECCCcccHHHHH
Q 033075           86 -EKYYEEAHAVVFVIDAACPSRFEDSK  111 (128)
Q Consensus        86 -~~~~~~~~~~v~v~d~~~~~s~~~~~  111 (128)
                       ..+++.+|++++|+|+++..+++...
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~  552 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLK  552 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHH
Confidence             23468899999999999988877664

>PRK00089 era GTPase Era; Reviewed

Probab=99.37  E-value=9.9e-12  Score=86.98  Aligned_cols=84  Identities=24%  Similarity=0.282  Sum_probs=54.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECCeEEEEEeCCCCccch--------hhHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSNSKLVFWDLGGQPGLR--------SIWE   86 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~D~~g~~~~~--------~~~~   86 (128)
                      +.-.|+++|.+|||||||+|++++  .+... .. ....|..... .....++.++.++||||.....        ....
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g--~~~~~-vs-~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~   79 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVG--QKISI-VS-PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW   79 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhC--Cceee-cC-CCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence            456799999999999999999987  22100 00 1111222222 2233345899999999965432        2223


Q ss_pred             HhhhccCEEEEEEECCC
Q 033075           87 KYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~  103 (128)
                      ..+..+|++++|+|+++
T Consensus        80 ~~~~~~D~il~vvd~~~   96 (292)
T PRK00089         80 SSLKDVDLVLFVVDADE   96 (292)
T ss_pred             HHHhcCCEEEEEEeCCC
Confidence            45678999999999988

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.36  E-value=7.5e-12  Score=91.78  Aligned_cols=90  Identities=20%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCC-----------C--CCCcCCcceEEEEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-----------P--DRIVPTVGLNIGRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~-----------~--~~~~~t~~~~~~~~~~~   66 (128)
                      .++.++++++|..++|||||+++|+.....+.              +..           +  .+.-.|++.....++.+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            46789999999999999999999985221110              000           0  01223444455666677


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                      +.++.+||+||+++|.......++.+|++++|+|+++
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~  119 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD  119 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence            7999999999998886655555689999999999987

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.35  E-value=3.1e-11  Score=80.99  Aligned_cols=102  Identities=19%  Similarity=0.147  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc-------hhhHHH---
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEK---   87 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~---   87 (128)
                      ++|+|+|.+|+||||++|.++.  .+...........|.........+.+..+.++||||-.+.       ......   
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg--~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILG--KEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT--SS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc--ccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            5899999999999999999998  3221111122234555556666889999999999993321       111111   


Q ss_pred             -hhhccCEEEEEEECCCcc-cHHHHHHHHHHHhcCc
Q 033075           88 -YYEEAHAVVFVIDAACPS-RFEDSKTALGKFFGMR  121 (128)
Q Consensus        88 -~~~~~~~~v~v~d~~~~~-s~~~~~~~l~~~~~~~  121 (128)
                       ...+.+++++|+...+-. .-..+.+++.+++...
T Consensus        79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~  114 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE  114 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG
T ss_pred             hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH
Confidence             234689999999988422 2334455666666543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.35  E-value=6.2e-12  Score=87.65  Aligned_cols=99  Identities=21%  Similarity=0.203  Sum_probs=72.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc----c---hhhHHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----L---RSIWEK   87 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----~---~~~~~~   87 (128)
                      ....+++++|.|++|||||++.+.+..+    +..+..+.|.......+.+++.++++.|+||.-.    -   ......
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~s----eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vls  136 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKS----EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLS  136 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCc----cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeee
Confidence            4567999999999999999999998322    2333445566666778999999999999997211    1   122345


Q ss_pred             hhhccCEEEEEEECCCccc-HHHHHHHHHHH
Q 033075           88 YYEEAHAVVFVIDAACPSR-FEDSKTALGKF  117 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~~s-~~~~~~~l~~~  117 (128)
                      ..++||++++|+|+..+.+ .+.+...+++.
T Consensus       137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~  167 (365)
T COG1163         137 VARNADLIIIVLDVFEDPHHRDIIERELEDV  167 (365)
T ss_pred             eeccCCEEEEEEecCCChhHHHHHHHHHHhc
Confidence            5699999999999997655 66665555553

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.35  E-value=1.3e-11  Score=89.58  Aligned_cols=87  Identities=26%  Similarity=0.359  Sum_probs=65.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhH--------H
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW--------E   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~   86 (128)
                      +.-+|++++|.||+|||||+|.+++  .+. .-..+..-.|.++-.+.+.++|+++.+.||.|.++.....        .
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~--~d~-AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~  291 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLG--RDR-AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK  291 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhc--CCc-eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence            4678999999999999999999998  221 0111222345556668899999999999999977553322        3


Q ss_pred             HhhhccCEEEEEEECCCc
Q 033075           87 KYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~  104 (128)
                      ..+.+||.+++|+|.+.+
T Consensus       292 ~~i~~ADlvL~v~D~~~~  309 (454)
T COG0486         292 KAIEEADLVLFVLDASQP  309 (454)
T ss_pred             HHHHhCCEEEEEEeCCCC
Confidence            446899999999999985

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.35  E-value=2.9e-11  Score=93.61  Aligned_cols=87  Identities=25%  Similarity=0.214  Sum_probs=59.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhhHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWE   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~   86 (128)
                      ....+|+++|.+++|||||+++++.  ... ....+....|........++++..+.+|||||...        +.....
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~--~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~  349 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILG--RRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQ  349 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhC--CCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence            4457899999999999999999987  110 00011111222223345566778999999999653        333445


Q ss_pred             HhhhccCEEEEEEECCCc
Q 033075           87 KYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~  104 (128)
                      .+++.+|++++|+|+++.
T Consensus       350 ~~~~~aD~iL~VvDa~~~  367 (712)
T PRK09518        350 IAVSLADAVVFVVDGQVG  367 (712)
T ss_pred             HHHHhCCEEEEEEECCCC
Confidence            677899999999999864

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.34  E-value=1.3e-11  Score=82.28  Aligned_cols=85  Identities=19%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCCCCcCCcceEEEEEEEC---------------------------C--
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDRIVPTVGLNIGRIEVS---------------------------N--   67 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~---------------------------~--   67 (128)
                      ++|+++|..++|||||+..+.....+. ..+...  ..++......+.+.                           +  
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELER--NITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGE   78 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEc--CCceeecccccccccccCcCCCCccccccccccccccccccCCc
Confidence            478999999999999999997631111 011000  01111111111110                           2  


Q ss_pred             ----eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           68 ----SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        68 ----~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                          ..+.+||+||++.+.......+..+|++++|+|++++
T Consensus        79 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~  119 (203)
T cd01888          79 TKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP  119 (203)
T ss_pred             cccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC
Confidence                6799999999998877777777889999999999873

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK13351 elongation factor G; Reviewed

Probab=99.33  E-value=2.6e-11  Score=93.60  Aligned_cols=99  Identities=19%  Similarity=0.133  Sum_probs=74.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------CCCCC-------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------GLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      ....+|+++|..++|||||+++++.......       +.+..       ....|+......+.+.+..+.+||+||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            4567999999999999999999986322110       00000       123355555567778889999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA  113 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~  113 (128)
                      +...+..+++.+|++++|+|+++..+......|
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~  118 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW  118 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence            988889999999999999999987776654333

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.33  E-value=4.5e-11  Score=82.92  Aligned_cols=87  Identities=18%  Similarity=0.115  Sum_probs=64.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCC--CC----------CCC--CCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVE--GL----------PPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~----------~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   84 (128)
                      +|+++|.+++|||||+++++.......  +.          .+.  +...|+......+.+++.++.++|+||..++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            479999999999999999975222110  00          000  1112333334667788899999999999988888


Q ss_pred             HHHhhhccCEEEEEEECCCcc
Q 033075           85 WEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      +..+++.+|++++|+|+.+..
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~  101 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGV  101 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCC
Confidence            888999999999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.33  E-value=1.3e-11  Score=93.55  Aligned_cols=95  Identities=25%  Similarity=0.352  Sum_probs=64.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC----C------------eEEEEEeCCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----N------------SKLVFWDLGGQ   78 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----~------------~~~~~~D~~g~   78 (128)
                      .+...|+++|..++|||||++++..  .......+.....++|.........    +            ..+.+||+||+
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~--~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRG--TAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC--cccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            3556799999999999999999976  2221122222223344332221110    0            12789999999


Q ss_pred             ccchhhHHHhhhccCEEEEEEECCC---cccHHHHH
Q 033075           79 PGLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSK  111 (128)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~  111 (128)
                      +.|..++...++.+|++++|+|+++   +.+++.+.
T Consensus        82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~  117 (586)
T PRK04004         82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN  117 (586)
T ss_pred             HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH
Confidence            9999888888899999999999997   55555553

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.33  E-value=3e-11  Score=88.76  Aligned_cols=91  Identities=24%  Similarity=0.206  Sum_probs=61.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC-cCCcceEEEEEEECCeEEEEEeCCCCccchh----------h
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------I   84 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~   84 (128)
                      ..++|+++|.+++|||||+++++.  .+.  ...... ..|.......+..++..+.+||+||......          .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~--~~~--~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~  247 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLG--EER--VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVI  247 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC--CCc--eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHH
Confidence            568999999999999999999986  110  011111 1222222344556778999999999543211          1


Q ss_pred             -HHHhhhccCEEEEEEECCCcccHHHH
Q 033075           85 -WEKYYEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        85 -~~~~~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                       ...+++.+|++++|+|++++.+....
T Consensus       248 ~~~~~~~~ad~~ilViD~~~~~~~~~~  274 (435)
T PRK00093        248 RTLKAIERADVVLLVIDATEGITEQDL  274 (435)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHH
Confidence             12467899999999999988776554

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.32  E-value=9.6e-12  Score=79.85  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=52.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhH----HHhhhccCE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW----EKYYEEAHA   94 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~   94 (128)
                      +|+++|.+++|||||++++..      . +. ....+.     .+.+...  .+||+||.......+    ...++.+|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~------~-~~-~~~~~~-----~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~   67 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQG------N-YT-LARKTQ-----AVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDM   67 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcC------C-Cc-cCccce-----EEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence            799999999999999999775      2 11 111222     2233332  379999973222111    233689999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHH
Q 033075           95 VVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      +++|+|+++.+++..  .|+.++
T Consensus        68 il~v~d~~~~~s~~~--~~~~~~   88 (158)
T PRK15467         68 LIYVHGANDPESRLP--AGLLDI   88 (158)
T ss_pred             EEEEEeCCCcccccC--HHHHhc
Confidence            999999998876532  355443

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.32  E-value=4.8e-11  Score=84.43  Aligned_cols=84  Identities=23%  Similarity=0.348  Sum_probs=53.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE-----------------EEC---CeEEEEEeCCCC-
Q 033075           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-----------------EVS---NSKLVFWDLGGQ-   78 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~-----------------~~~---~~~~~~~D~~g~-   78 (128)
                      |+++|.+++|||||++++................|+.|......                 ..+   ...+++||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998222211111112234444322110                 012   267999999996 


Q ss_pred             ---ccchhhHHH---hhhccCEEEEEEECCC
Q 033075           79 ---PGLRSIWEK---YYEEAHAVVFVIDAAC  103 (128)
Q Consensus        79 ---~~~~~~~~~---~~~~~~~~v~v~d~~~  103 (128)
                         ++.+.+-..   .+++||++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               444444344   5899999999999984

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.31  E-value=1.8e-11  Score=92.82  Aligned_cols=90  Identities=23%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCc--CCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV--PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +.|+++|..++|||||++++...  +. +.++.+..  .|+......+.+++..+.+||+||++.|.......+.++|++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~--~~-d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~a   77 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGI--AA-DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAA   77 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc--cC-cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence            36899999999999999999861  11 22222322  233344456677778999999999999888777788999999


Q ss_pred             EEEEECCC---cccHHHH
Q 033075           96 VFVIDAAC---PSRFEDS  110 (128)
Q Consensus        96 v~v~d~~~---~~s~~~~  110 (128)
                      ++|+|+++   +.+++++
T Consensus        78 ILVVDa~~G~~~qT~ehl   95 (581)
T TIGR00475        78 LLVVDADEGVMTQTGEHL   95 (581)
T ss_pred             EEEEECCCCCcHHHHHHH
Confidence            99999987   3444444

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.31  E-value=1.8e-11  Score=88.69  Aligned_cols=95  Identities=25%  Similarity=0.221  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc---------hhhHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKY   88 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~   88 (128)
                      ..|+++|.||||||||+|+|..+..-   -..+..-.|.+-.+....+.+..+.+.||+|-+..         .......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~A---IV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIA---IVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeee---EeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            56999999999999999999972111   11123334555556788899999999999995532         2244456


Q ss_pred             hhccCEEEEEEECCCcc--cHHHHHHHHH
Q 033075           89 YEEAHAVVFVIDAACPS--RFEDSKTALG  115 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~--s~~~~~~~l~  115 (128)
                      +..||+++||+|....-  .-+++..|+.
T Consensus        81 i~eADvilfvVD~~~Git~~D~~ia~~Lr  109 (444)
T COG1160          81 IEEADVILFVVDGREGITPADEEIAKILR  109 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            78999999999988732  2244445554

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.31  E-value=4.2e-11  Score=93.09  Aligned_cols=87  Identities=25%  Similarity=0.361  Sum_probs=58.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh----------hH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------IW   85 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~   85 (128)
                      +.++|+++|.+|+|||||+|++.......    .+....|.......+..++.++.++|+||..++..          ..
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v----gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~   77 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV----GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA   77 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcc----CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence            45789999999999999999998721111    11111233333345566678999999999876532          12


Q ss_pred             HHhh--hccCEEEEEEECCCccc
Q 033075           86 EKYY--EEAHAVVFVIDAACPSR  106 (128)
Q Consensus        86 ~~~~--~~~~~~v~v~d~~~~~s  106 (128)
                      ..++  ..+|++++|+|.++.++
T Consensus        78 ~~~l~~~~aD~vI~VvDat~ler  100 (772)
T PRK09554         78 CHYILSGDADLLINVVDASNLER  100 (772)
T ss_pred             HHHHhccCCCEEEEEecCCcchh
Confidence            2333  47999999999988654

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.31  E-value=5.6e-11  Score=86.32  Aligned_cols=81  Identities=19%  Similarity=0.328  Sum_probs=53.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE---------------------ECC---eEEEEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE---------------------VSN---SKLVFW   73 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~~~---~~~~~~   73 (128)
                      ++|+++|.+++|||||++++.......    .+....|+..+.....                     .++   .++++|
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~----~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~   77 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEI----ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELI   77 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccc----cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEE
Confidence            689999999999999999999822211    1112233333322211                     122   678999


Q ss_pred             eCCCC----ccchhhHHHh---hhccCEEEEEEECC
Q 033075           74 DLGGQ----PGLRSIWEKY---YEEAHAVVFVIDAA  102 (128)
Q Consensus        74 D~~g~----~~~~~~~~~~---~~~~~~~v~v~d~~  102 (128)
                      |+||.    .....+-..+   ++++|++++|+|+.
T Consensus        78 D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         78 DVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             EcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            99993    2333333344   79999999999997

>PRK10218 GTP-binding protein; Provisional

Probab=99.31  E-value=4.7e-11  Score=90.67  Aligned_cols=90  Identities=19%  Similarity=0.235  Sum_probs=66.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--------CCCCcCCcceE----EEEEEECCeEEEEEeCCCCccchh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--------PDRIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRS   83 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--------~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~   83 (128)
                      ...+|+++|..++|||||+++++..........        ......+.|.+    ...+.+++..+.+||+||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            356899999999999999999987322110000        00112233433    335566779999999999999999


Q ss_pred             hHHHhhhccCEEEEEEECCCcc
Q 033075           84 IWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      .+..+++.+|++++|+|+++..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~  105 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGP  105 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCc
Confidence            9999999999999999998754

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.31  E-value=7.6e-11  Score=79.61  Aligned_cols=91  Identities=16%  Similarity=0.105  Sum_probs=62.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCC----CCCC--------CCCcCCcceEEEEEEEC----------CeEEEEEeCC
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVE----GLPP--------DRIVPTVGLNIGRIEVS----------NSKLVFWDLG   76 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~----~~~~--------~~~~~t~~~~~~~~~~~----------~~~~~~~D~~   76 (128)
                      +|+++|..++|||||+.+|+.......    +...        .+...|+......+.+.          +..+.+||+|
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999987322110    0000        00011121111222333          5789999999


Q ss_pred             CCccchhhHHHhhhccCEEEEEEECCCcccHHH
Q 033075           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED  109 (128)
Q Consensus        77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~  109 (128)
                      |+..|......+++.+|++++|+|+++....+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t  114 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT  114 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence            999999988999999999999999998766544

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG1159 Era GTPase [General function prediction only]

Probab=99.31  E-value=1.4e-11  Score=84.98  Aligned_cols=85  Identities=22%  Similarity=0.311  Sum_probs=57.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh--------hHHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEK   87 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~   87 (128)
                      +.--++++|.|++|||||+|++.+  .+.. -.+.....|...-...++.++.++.+.||||-..-+.        ....
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G--~Kis-IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVG--QKIS-IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc--CceE-eecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            455789999999999999999998  3221 1111222222222244556679999999999543322        2234


Q ss_pred             hhhccCEEEEEEECCC
Q 033075           88 YYEEAHAVVFVIDAAC  103 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~  103 (128)
                      .+..+|+++||+|+++
T Consensus        82 sl~dvDlilfvvd~~~   97 (298)
T COG1159          82 ALKDVDLILFVVDADE   97 (298)
T ss_pred             HhccCcEEEEEEeccc
Confidence            4578999999999887

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.30  E-value=1.4e-14  Score=93.39  Aligned_cols=103  Identities=22%  Similarity=0.338  Sum_probs=88.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC---eEEEEEeCCCCccchhhHHHhhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN---SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ..+|+.++|.-++|||+++++...      ..+...+..|+|...  ....+++   +++.+||+.|++++..+..-|++
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~------~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyk   97 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVH------QNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYK   97 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHH------HHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEec
Confidence            457999999999999999999998      666667778888653  4555665   67899999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~  124 (128)
                      .+++..+|||+++...|+....|..++.....++
T Consensus        98 ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLp  131 (229)
T KOG4423|consen   98 EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLP  131 (229)
T ss_pred             CCcceEEEEEccccccccHHHHHHHhccCcccCC
Confidence            9999999999999999999999999987665443

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.30  E-value=5e-11  Score=90.44  Aligned_cols=100  Identities=18%  Similarity=0.190  Sum_probs=71.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCC--C----------CCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHH
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP--P----------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE   86 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   86 (128)
                      +|+++|..++|||||+.+++..........  .          .+...|+......+.+++..+.+||+||+.+|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            689999999999999999987322110000  0          0011233333456778889999999999999998889


Q ss_pred             HhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+++.+|++++|+|+++.. ....+.|+..+..
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~  114 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE  114 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH
Confidence            9999999999999998743 3445556665544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.30  E-value=5e-11  Score=78.46  Aligned_cols=91  Identities=23%  Similarity=0.249  Sum_probs=67.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC------------CCC--CCCcCCcceEEEEEE--ECCeEEEEEeCCCCc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------------LPP--DRIVPTVGLNIGRIE--VSNSKLVFWDLGGQP   79 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~------------~~~--~~~~~t~~~~~~~~~--~~~~~~~~~D~~g~~   79 (128)
                      +..+|+++|..++|||||+.+|+........            ..+  ....-|.......+.  ..+..+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            5689999999999999999999873322100            000  011234444455665  667999999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCccc
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      +|.......++.+|++++|+|+.+.-.
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~  108 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQ  108 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBST
T ss_pred             ceeecccceecccccceeeeecccccc
Confidence            998888888999999999999987644

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd00880 Era_like Era (E

Probab=99.30  E-value=5.7e-11  Score=74.71  Aligned_cols=87  Identities=23%  Similarity=0.226  Sum_probs=59.2

Q ss_pred             EEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC-CeEEEEEeCCCCccchh-------hHHHhhhccC
Q 033075           22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRS-------IWEKYYEEAH   93 (128)
Q Consensus        22 l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-------~~~~~~~~~~   93 (128)
                      ++|.+|+|||||++++.......   .......+........... +..+.+||+||......       ....+++.+|
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d   77 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAI---VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD   77 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccc---cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence            58999999999999998721110   1112222333333344444 57899999999765532       3345778999


Q ss_pred             EEEEEEECCCcccHHHHH
Q 033075           94 AVVFVIDAACPSRFEDSK  111 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~  111 (128)
                      ++++|+|.++..+.....
T Consensus        78 ~il~v~~~~~~~~~~~~~   95 (163)
T cd00880          78 LILFVVDADLRADEEEEK   95 (163)
T ss_pred             EEEEEEeCCCCCCHHHHH
Confidence            999999999988777664

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1.3e-11  Score=81.52  Aligned_cols=100  Identities=25%  Similarity=0.379  Sum_probs=77.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhh---cc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE---EA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~   92 (128)
                      ..-.++++|+.+||||+|+.++..      +..+..+ +++..+...+.+++...++.|.||+.+.+.....++.   .+
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~------gs~~~Tv-tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~a  109 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLIT------GSHRGTV-TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSA  109 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhc------CCccCee-eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccc
Confidence            345799999999999999999998      5444333 4444555666677778999999999999887777776   79


Q ss_pred             CEEEEEEECCC-cccHHHHHHHHHHHhcCcc
Q 033075           93 HAVVFVIDAAC-PSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        93 ~~~v~v~d~~~-~~s~~~~~~~l~~~~~~~~  122 (128)
                      -++|||+|..- +.....+.+++.+++.+..
T Consensus       110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~  140 (238)
T KOG0090|consen  110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSR  140 (238)
T ss_pred             eeEEEEEeccccchhhHHHHHHHHHHHHhhc
Confidence            99999999774 5566777788888776654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.30  E-value=1.6e-11  Score=90.05  Aligned_cols=93  Identities=17%  Similarity=0.160  Sum_probs=66.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC-----------CCC--CCcCCcceEEEEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-----------PPD--RIVPTVGLNIGRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~-----------~~~--~~~~t~~~~~~~~~~~   66 (128)
                      .++.++++++|..++|||||+.+|+.......              +.           .+.  +...|++.....+..+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            46789999999999999999999986211110              00           000  1122333334555666


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      +..+.+||+||++.|.......+..+|++++|+|+++.++
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~  123 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF  123 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc
Confidence            7899999999998886655666789999999999998754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.29  E-value=7.5e-11  Score=89.68  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCC-----CCCCCC--CcCCcceE----EEEEEEC-----CeEEEEEeCCCCc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE-----GLPPDR--IVPTVGLN----IGRIEVS-----NSKLVFWDLGGQP   79 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-----~~~~~~--~~~t~~~~----~~~~~~~-----~~~~~~~D~~g~~   79 (128)
                      ..-+++++|..++|||||+.+++.......     ....+.  .....|..    ...+.+.     ++.+.+|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            345899999999999999999987322110     011000  01122222    2233332     3789999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG  115 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~  115 (128)
                      +|...+..+++.+|++++|+|+++..+.+....|..
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~  121 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL  121 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999999998766665555443

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.29  E-value=1.9e-11  Score=90.49  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=78.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      ++.+||+++|+.|+|||||+-.+..      .++++...+.....  ...++......++.|++...+-+......++.+
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~------eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA   80 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLE------EEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA   80 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHh------hhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhc
Confidence            5789999999999999999999999      77776665544421  123333447799999997777666767888999


Q ss_pred             CEEEEEEECCCcccHHHHHH-HHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKT-ALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~-~l~~~~~~  120 (128)
                      |+++++|+++++++++.+.. |+-.+.+.
T Consensus        81 ~vi~lvyavd~~~T~D~ist~WLPlir~~  109 (625)
T KOG1707|consen   81 DVICLVYAVDDESTVDRISTKWLPLIRQL  109 (625)
T ss_pred             CEEEEEEecCChHHhhhhhhhhhhhhhcc
Confidence            99999999999999999977 55555443

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.27  E-value=1.4e-11  Score=84.23  Aligned_cols=90  Identities=22%  Similarity=0.389  Sum_probs=63.6

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECCeEEEEEeCCCCcc-------chh
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNSKLVFWDLGGQPG-------LRS   83 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~D~~g~~~-------~~~   83 (128)
                      +...+.++++++|..|+||||++|++..  .+  ...........+.. .....+++..+.+||+||.++       ++.
T Consensus        34 l~~~~pvnvLi~G~TG~GKSSliNALF~--~~--~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~  109 (296)
T COG3596          34 LTEKEPVNVLLMGATGAGKSSLINALFQ--GE--VKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQ  109 (296)
T ss_pred             hcccCceeEEEecCCCCcHHHHHHHHHh--cc--CceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHH
Confidence            3456889999999999999999999996  21  11111111122111 123345568899999999554       677


Q ss_pred             hHHHhhhccCEEEEEEECCCcc
Q 033075           84 IWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      ....++...|+++.+.++.|+.
T Consensus       110 ~~~d~l~~~DLvL~l~~~~dra  131 (296)
T COG3596         110 LYRDYLPKLDLVLWLIKADDRA  131 (296)
T ss_pred             HHHHHhhhccEEEEeccCCCcc
Confidence            7888889999999999988865

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.26  E-value=7.8e-11  Score=75.13  Aligned_cols=92  Identities=24%  Similarity=0.291  Sum_probs=56.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCCCcc----------chhhHH
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQPG----------LRSIWE   86 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~----------~~~~~~   86 (128)
                      .|+++|.+|+|||||++.+.+      +.......++.+..  ....... ..+.+||+||...          +.....
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~------~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   73 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTN------RKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIE   73 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhc------CCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHH
Confidence            479999999999999999995      22222233333322  2222222 3899999999432          333444


Q ss_pred             Hhhh---ccCEEEEEEECCCccc--HHHHHHHHHHH
Q 033075           87 KYYE---EAHAVVFVIDAACPSR--FEDSKTALGKF  117 (128)
Q Consensus        87 ~~~~---~~~~~v~v~d~~~~~s--~~~~~~~l~~~  117 (128)
                      .++.   .++++++++|..+..+  ...+..|+...
T Consensus        74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~  109 (170)
T cd01876          74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL  109 (170)
T ss_pred             HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc
Confidence            4554   4578889999886532  23445566554

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.25  E-value=5.6e-11  Score=78.86  Aligned_cols=78  Identities=15%  Similarity=0.279  Sum_probs=46.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce---E--EEEEEEC-CeEEEEEeCCCCccchhhHHHh--
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL---N--IGRIEVS-NSKLVFWDLGGQPGLRSIWEKY--   88 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~---~--~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~--   88 (128)
                      .+||+++|.+|+|||||+|.+..      ...+.....+.+.   .  ...+... ..++.+||+||..........|  
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g------~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~   74 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRG------VGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLE   74 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhc------cCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHH
Confidence            36899999999999999999987      2221111111111   0  1111111 2478999999975432222222  


Q ss_pred             ---hhccCEEEEEEE
Q 033075           89 ---YEEAHAVVFVID  100 (128)
Q Consensus        89 ---~~~~~~~v~v~d  100 (128)
                         +..+|+++++.+
T Consensus        75 ~~~~~~~d~~l~v~~   89 (197)
T cd04104          75 EMKFSEYDFFIIISS   89 (197)
T ss_pred             HhCccCcCEEEEEeC
Confidence               567888888743

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.25  E-value=5.1e-11  Score=89.30  Aligned_cols=91  Identities=21%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCC--CCCC--------C-CC---C----cCCcceEEEEEEECCeEEEEEeCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV--EGLP--------P-DR---I----VPTVGLNIGRIEVSNSKLVFWDLG   76 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~--~~~~--------~-~~---~----~~t~~~~~~~~~~~~~~~~~~D~~   76 (128)
                      .+..+|+++|..++|||||.++++.....+  .+..        . ..   .    ..++......+.+++..+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            356799999999999999999997521110  0100        0 00   0    011222234567788999999999


Q ss_pred             CCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      |+.+|......+++.+|++++|+|+++.-
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv  116 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGV  116 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCC
Confidence            99999887778889999999999998754

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.24  E-value=1.1e-10  Score=77.33  Aligned_cols=89  Identities=19%  Similarity=0.172  Sum_probs=61.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC----------CCCC--CCcCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~----------~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~   83 (128)
                      ++++++++|..++|||||+++|+........          ..+.  ....|.......++.++.++.+.|+||...|..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            3578999999999999999999863211100          0000  111122222234445568899999999988877


Q ss_pred             hHHHhhhccCEEEEEEECCCc
Q 033075           84 IWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .....+..+|++++|+|+...
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g  101 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDG  101 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCC
Confidence            667777899999999998864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.23  E-value=2.6e-10  Score=82.43  Aligned_cols=84  Identities=19%  Similarity=0.254  Sum_probs=58.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG   77 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g   77 (128)
                      ...++|+++|.|++|||||++++.......    .+....|+..+...+.+.+                 .++.+.|+||
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v----~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG   94 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPA----ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG   94 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccc----cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence            356799999999999999999997722211    1223445556655665543                 3589999999


Q ss_pred             Ccc-------chhhHHHhhhccCEEEEEEECC
Q 033075           78 QPG-------LRSIWEKYYEEAHAVVFVIDAA  102 (128)
Q Consensus        78 ~~~-------~~~~~~~~~~~~~~~v~v~d~~  102 (128)
                      ...       ........++++|++++|+|+.
T Consensus        95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            431       2223344568899999999985

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.23  E-value=4.7e-10  Score=77.00  Aligned_cols=86  Identities=16%  Similarity=0.163  Sum_probs=55.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch--h--------h
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--S--------I   84 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--~--------~   84 (128)
                      ...++|+++|.+|+|||||+|+++.  .... ........|..........++.++.++||||-....  .        .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg--~~~~-~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFG--ERKA-ATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhC--CCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            4679999999999999999999998  2210 011111233444444556778899999999965441  1        1


Q ss_pred             HHHhhh--ccCEEEEEEECCC
Q 033075           85 WEKYYE--EAHAVVFVIDAAC  103 (128)
Q Consensus        85 ~~~~~~--~~~~~v~v~d~~~  103 (128)
                      ...++.  ..+++++|..++.
T Consensus       106 I~~~l~~~~idvIL~V~rlD~  126 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDM  126 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCC
Confidence            223333  5678888876554

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.23  E-value=4.7e-10  Score=78.69  Aligned_cols=85  Identities=11%  Similarity=0.128  Sum_probs=53.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh-------HHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-------WEK   87 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~   87 (128)
                      ...++|+++|.+|+||||++|+++.  .+... .......+..........++.++.++||||.......       ...
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG--~~v~~-vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIG--ERIAT-VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhC--CCccc-ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            4688999999999999999999997  22100 0001111122222344567899999999996644221       111


Q ss_pred             hh--hccCEEEEEEECC
Q 033075           88 YY--EEAHAVVFVIDAA  102 (128)
Q Consensus        88 ~~--~~~~~~v~v~d~~  102 (128)
                      ++  ...|++++|..++
T Consensus       113 ~l~~~g~DvVLyV~rLD  129 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLD  129 (313)
T ss_pred             HhhcCCCCEEEEEeccC
Confidence            22  1588999996544

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.22  E-value=1.1e-10  Score=81.34  Aligned_cols=100  Identities=22%  Similarity=0.333  Sum_probs=73.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCC-------ccchhhHHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQ-------PGLRSIWEK   87 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~-------~~~~~~~~~   87 (128)
                      ....+.+||-|++|||||++.+.....++.    ...+.|+..++..+.+++ .++++-|+||.       ......+..
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKpkVa----~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr  270 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKPKVA----HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR  270 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCCccc----ccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHH
Confidence            345688999999999999999998433332    233455555666777777 66999999992       222334556


Q ss_pred             hhhccCEEEEEEECCCc---ccHHHHHHHHHHHhc
Q 033075           88 YYEEAHAVVFVIDAACP---SRFEDSKTALGKFFG  119 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~---~s~~~~~~~l~~~~~  119 (128)
                      +++.|+.++||+|++..   +-++.++..+.|+-.
T Consensus       271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~  305 (366)
T KOG1489|consen  271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELEL  305 (366)
T ss_pred             HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence            77899999999999998   777777766666543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.21  E-value=1e-10  Score=78.82  Aligned_cols=86  Identities=20%  Similarity=0.274  Sum_probs=61.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC-----------CCC--CCcCCcceEEEEEEECCeEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-----------PPD--RIVPTVGLNIGRIEVSNSKLV   71 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~-----------~~~--~~~~t~~~~~~~~~~~~~~~~   71 (128)
                      +|+++|..++|||||+.+|+....-+.              +.           ...  +...|.......+.+.+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            479999999999999999975221100              00           000  111233333456677889999


Q ss_pred             EEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        72 ~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      +||+||...+.......++.+|++++|+|+++.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~  113 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG  113 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence            999999988877666777889999999999984

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00503 prfC peptide chain release factor 3

Probab=99.21  E-value=2.7e-10  Score=85.45  Aligned_cols=90  Identities=19%  Similarity=0.202  Sum_probs=63.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCC--CCCC---------CC---CCcCCcce----EEEEEEECCeEEEEEeCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV--EGLP---------PD---RIVPTVGL----NIGRIEVSNSKLVFWDLG   76 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~--~~~~---------~~---~~~~t~~~----~~~~~~~~~~~~~~~D~~   76 (128)
                      .+..+++++|.+++|||||+++++....-+  .+..         ..   ......|.    ....+.+.+..+.+||+|
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            456799999999999999999987521111  0000         00   01111222    234566778999999999


Q ss_pred             CCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           77 GQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      |+..|......+++.+|++++|+|+++.
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~g  116 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG  116 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence            9998887777788999999999999874

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.20  E-value=1.6e-10  Score=80.18  Aligned_cols=88  Identities=24%  Similarity=0.325  Sum_probs=59.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc------cchh-----
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP------GLRS-----   83 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~------~~~~-----   83 (128)
                      ++.++++++|+|++|||||.|.+.+  .+.. -.......|.--....++-+..++.++|+||.-      .+..     
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig--~kv~-~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIG--QKVS-AVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhC--Cccc-cccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            5788999999999999999999998  2221 111222233333345666677999999999922      1111     


Q ss_pred             -hHHHhhhccCEEEEEEECCCcc
Q 033075           84 -IWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        84 -~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                       .....+..+|+++.|+|+++..
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr  169 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATR  169 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCc
Confidence             1123457899999999999644

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=2.4e-10  Score=83.43  Aligned_cols=100  Identities=18%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc-----h----hhH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-----R----SIW   85 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-----~----~~~   85 (128)
                      +..++|+++|.||+|||||+|.+.+  .+.. -..+..-.|.+.-...++++|.++.+.||.|..+-     .    ..-
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~--~drs-IVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSR--EDRS-IVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhc--CCce-EeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence            4568999999999999999999998  3321 11112223344434677899999999999996651     0    122


Q ss_pred             HHhhhccCEEEEEEEC--CCcccHHHHHHHHHHH
Q 033075           86 EKYYEEAHAVVFVIDA--ACPSRFEDSKTALGKF  117 (128)
Q Consensus        86 ~~~~~~~~~~v~v~d~--~~~~s~~~~~~~l~~~  117 (128)
                      ...++.+|++++|+|.  ++-++-..+.+.+...
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~  376 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETE  376 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHh
Confidence            3446789999999999  5555555555555443

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.19  E-value=3.5e-10  Score=87.45  Aligned_cols=94  Identities=18%  Similarity=0.083  Sum_probs=68.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCC------------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      .+..+|+++|..++|||||+++++.......  +...+            ....|+......+.+++.++.+|||||..+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            3456999999999999999999975222110  00000            111233334567778889999999999998


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHH
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFE  108 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~  108 (128)
                      +......+++.+|++++|+|+.+....+
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~  115 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQ  115 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChh
Confidence            8888888899999999999999865544

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01900 YchF YchF subfamily

Probab=99.19  E-value=1.7e-10  Score=80.04  Aligned_cols=80  Identities=23%  Similarity=0.340  Sum_probs=54.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCe-----------------EEEEEeCCCCcc--
Q 033075           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-----------------KLVFWDLGGQPG--   80 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~~D~~g~~~--   80 (128)
                      ++++|.|+||||||++++......    ..+....|+..+...+.+.+.                 ++.++|+||...  
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~----~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a   76 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAE----AANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   76 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCc----cccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC
Confidence            579999999999999999982221    112344555666556555542                 599999999331  


Q ss_pred             -----chhhHHHhhhccCEEEEEEECCC
Q 033075           81 -----LRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        81 -----~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                           ........++.+|++++|+|+.+
T Consensus        77 ~~~~glg~~fL~~i~~~D~li~VV~~f~  104 (274)
T cd01900          77 SKGEGLGNKFLSHIREVDAIAHVVRCFE  104 (274)
T ss_pred             chhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence                 12233344678999999999753

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.18  E-value=6.4e-10  Score=77.82  Aligned_cols=100  Identities=19%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCC--ccchhhH------H
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--PGLRSIW------E   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~--~~~~~~~------~   86 (128)
                      .....+++-|.||||||||++.+.+...++    .+..+.|.+++++.++.++.++++.||||.  +....+.      .
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEv----A~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi  241 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEV----APYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAI  241 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCcc----CCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHH
Confidence            355678999999999999999999833333    345667889999999999999999999992  2222111      1


Q ss_pred             Hhh-hccCEEEEEEECCCc--ccHHHHHHHHHHHh
Q 033075           87 KYY-EEAHAVVFVIDAACP--SRFEDSKTALGKFF  118 (128)
Q Consensus        87 ~~~-~~~~~~v~v~d~~~~--~s~~~~~~~l~~~~  118 (128)
                      ..+ .-.++++|++|.+..  -+.+.=...++++.
T Consensus       242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk  276 (346)
T COG1084         242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIK  276 (346)
T ss_pred             HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHH
Confidence            112 346788999998853  34444334444443

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.17  E-value=1.5e-10  Score=84.51  Aligned_cols=88  Identities=20%  Similarity=0.257  Sum_probs=59.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceE-------------------EEEE-EE------
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLN-------------------IGRI-EV------   65 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~-------------------~~~~-~~------   65 (128)
                      ++++++|+++|..++|||||++++.....+   ..+.+.  .-|+...                   .... +.      
T Consensus         1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d---~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (406)
T TIGR03680         1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTD---THSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETE   77 (406)
T ss_pred             CCceEEEEEEccCCCCHHHHHHHHhCeecc---cCHhHHHcCceeEecccccccccccccCccccccccccccccccccc
Confidence            367899999999999999999999652111   000000  0011100                   0000 00      


Q ss_pred             CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .+..+.+||+||+++|...+......+|++++|+|+++.
T Consensus        78 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g  116 (406)
T TIGR03680        78 LLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP  116 (406)
T ss_pred             cccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC
Confidence            136799999999999988777777889999999999863

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01850 CDC_Septin CDC/Septin

Probab=99.17  E-value=3.3e-10  Score=78.86  Aligned_cols=61  Identities=25%  Similarity=0.363  Sum_probs=40.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC------CCCCcCCcceEE--EEEEECC--eEEEEEeCCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP------PDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQ   78 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~------~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~   78 (128)
                      -.++|+++|.+|+|||||++++..  .......      .....+|.....  ..+..++  .++.+|||||-
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~--~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf   73 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFN--TKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF   73 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHc--CCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence            468999999999999999999987  2211100      011334444433  2334455  67999999993

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.17  E-value=3.8e-10  Score=80.82  Aligned_cols=82  Identities=23%  Similarity=0.349  Sum_probs=56.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCCCcc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQPG   80 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~   80 (128)
                      ++++++|.|++|||||++++.......    .+....|+..+...+.+.+                 .++.+.|+||...
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v----~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~   78 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEA----ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVK   78 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCee----cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCC
Confidence            689999999999999999999822111    1223445555555555444                 2589999999432


Q ss_pred             -------chhhHHHhhhccCEEEEEEECCC
Q 033075           81 -------LRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        81 -------~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                             ........++.+|++++|+|+..
T Consensus        79 ~a~~g~glg~~fL~~i~~aD~li~VVd~f~  108 (364)
T PRK09601         79 GASKGEGLGNQFLANIREVDAIVHVVRCFE  108 (364)
T ss_pred             CCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence                   11233345689999999999863

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.13  E-value=6.8e-10  Score=84.42  Aligned_cols=76  Identities=28%  Similarity=0.339  Sum_probs=53.4

Q ss_pred             cCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccchhh------HHHhh--hccC
Q 033075           24 GIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRSI------WEKYY--EEAH   93 (128)
Q Consensus        24 G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~   93 (128)
                      |++|+|||||+|++.+      ....-...+  |.......+++++.++.+||+||..++...      ...++  +.+|
T Consensus         1 G~pNvGKSSL~N~Ltg------~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTG------ANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhC------CCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCC
Confidence            8999999999999987      222112222  333334566777888999999998776432      33343  3789


Q ss_pred             EEEEEEECCCcc
Q 033075           94 AVVFVIDAACPS  105 (128)
Q Consensus        94 ~~v~v~d~~~~~  105 (128)
                      ++++|+|.++.+
T Consensus        75 vvI~VvDat~le   86 (591)
T TIGR00437        75 LVVNVVDASNLE   86 (591)
T ss_pred             EEEEEecCCcch
Confidence            999999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.13  E-value=6.7e-10  Score=79.69  Aligned_cols=91  Identities=27%  Similarity=0.376  Sum_probs=69.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCC---------ccchhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQ---------PGLRSI   84 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~---------~~~~~~   84 (128)
                      .....|.++|-.++|||||+|++..  ..  ....++.+.|.+.....+.+.+ ..+.+.||.|-         +.|+..
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~--~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT  265 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTG--AD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST  265 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhc--cC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence            3567899999999999999999986  22  2334577888888888888885 89999999991         223332


Q ss_pred             HHHhhhccCEEEEEEECCCcccHHHH
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                      .. ....+|+++.|+|+++++..+++
T Consensus       266 LE-E~~~aDlllhVVDaSdp~~~~~~  290 (411)
T COG2262         266 LE-EVKEADLLLHVVDASDPEILEKL  290 (411)
T ss_pred             HH-HhhcCCEEEEEeecCChhHHHHH
Confidence            22 23689999999999999655555

>PRK12735 elongation factor Tu; Reviewed

Probab=99.11  E-value=1.1e-09  Score=79.75  Aligned_cols=91  Identities=22%  Similarity=0.203  Sum_probs=61.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CC---------CCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GL---------PPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-~~---------~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      .++.++++++|..++|||||+++|+....+.. ..         ...+  .--|+......++.++.++.++|+||+++|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            36789999999999999999999986211110 00         0001  111222222233345578999999999887


Q ss_pred             hhhHHHhhhccCEEEEEEECCCc
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .......+..+|++++|+|+.+.
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g  111 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADG  111 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCC
Confidence            66555667789999999998874

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.11  E-value=9.6e-10  Score=80.05  Aligned_cols=91  Identities=19%  Similarity=0.167  Sum_probs=60.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCC-C---------CCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV-E---------GLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~---------~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      .++.++|+++|..++|||||+++|+....+. .         +..+.+  .-.|+......++.++.++.+||+||+++|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            4678999999999999999999997421110 0         000001  112222222333334578999999999988


Q ss_pred             hhhHHHhhhccCEEEEEEECCCc
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ..........+|++++|+|+.+.
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g  111 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDG  111 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCC
Confidence            66555556788999999998873

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12739 elongation factor G; Reviewed

Probab=99.09  E-value=2.1e-09  Score=83.21  Aligned_cols=92  Identities=17%  Similarity=0.082  Sum_probs=68.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCC------------CCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      .+..+|+++|..++|||||+++|+.......  +...            .+..-|+......+.+++.++.++||||..+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            4567899999999999999999986322110  0000            0112344444567778889999999999988


Q ss_pred             chhhHHHhhhccCEEEEEEECCCccc
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      +...+...++.+|++++|+|+.+.-.
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~  111 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVE  111 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCC
Confidence            88888888999999999999987643

>PRK12736 elongation factor Tu; Reviewed

Probab=99.09  E-value=1.5e-09  Score=78.99  Aligned_cols=91  Identities=16%  Similarity=0.143  Sum_probs=61.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCC---------CCC--CCcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGL---------PPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~---------~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      .++.++|+++|..++|||||+.+|+....+. ...         ...  +...|+......+..++.++.++|+||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            4678999999999999999999998622110 000         000  1111222222233334578999999999887


Q ss_pred             hhhHHHhhhccCEEEEEEECCCc
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ..........+|++++|+|+.+.
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g  111 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDG  111 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCC
Confidence            66555666789999999998863

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.08  E-value=1e-09  Score=85.16  Aligned_cols=89  Identities=16%  Similarity=0.040  Sum_probs=62.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCC----C-----CCCC---CCcCCcceEEE----EEEECCeEEEEEeCCCCc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE----G-----LPPD---RIVPTVGLNIG----RIEVSNSKLVFWDLGGQP   79 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~----~-----~~~~---~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~   79 (128)
                      ...+|+++|..++|||||+++++.....+.    +     .+..   +...|+.....    ..+..+..+.+|||||..
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            457999999999999999999986311110    0     0000   01123332211    133456899999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCc
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      +|.......++.+|++++|+|+.+.
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g  122 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEG  122 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCC
Confidence            9888888889999999999998874

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.08  E-value=5.9e-10  Score=81.52  Aligned_cols=89  Identities=21%  Similarity=0.264  Sum_probs=57.3

Q ss_pred             hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC--CcCCcceEEEEEEE---------------------C---
Q 033075           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEV---------------------S---   66 (128)
Q Consensus        13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~--~~~t~~~~~~~~~~---------------------~---   66 (128)
                      .+++.++++++|..++|||||+.+|.....+   ..+.+  ...|+........+                     +   
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d---~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTD---RHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET   81 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecc---cCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence            3578999999999999999999999652111   11111  01111111100000                     0   


Q ss_pred             --CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           67 --NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        67 --~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                        ...+.+||+||+++|..........+|++++|+|++++
T Consensus        82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~  121 (411)
T PRK04000         82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEP  121 (411)
T ss_pred             ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence              25799999999988766545555677999999999964

>CHL00071 tufA elongation factor Tu

Probab=99.06  E-value=3.7e-09  Score=77.37  Aligned_cols=91  Identities=18%  Similarity=0.142  Sum_probs=62.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC----------CCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~----------~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      .++.++++++|..++|||||+++|+.......          +....+  ...|+......++.++.++.+.|+||+.+|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            46789999999999999999999987311100          000011  111122212234445688999999998887


Q ss_pred             hhhHHHhhhccCEEEEEEECCCc
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .......+..+|++++|+|+...
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g  111 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADG  111 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCC
Confidence            66666677899999999998864

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.06  E-value=1.5e-09  Score=80.73  Aligned_cols=91  Identities=18%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCCC-------------C--CCcCCcceEEEEEE
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP-------------D--RIVPTVGLNIGRIE   64 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~~-------------~--~~~~t~~~~~~~~~   64 (128)
                      .+..++++++|..++|||||+.+|+.....+.              +...             .  +...|+......++
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            46789999999999999999999986322110              1100             0  00112333334455


Q ss_pred             ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .++.++.++|+||++.|.......+..+|++++|+|+.+.
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G  143 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG  143 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            6678999999999988865555557999999999998764

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.06  E-value=1.7e-09  Score=78.62  Aligned_cols=88  Identities=23%  Similarity=0.171  Sum_probs=62.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc----------chh-hH
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----------LRS-IW   85 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~-~~   85 (128)
                      .+|++++|-|++|||||+|+++.  .+- .-..+..-.|.+.-...+++++..+.+.||.|-++          |.- ..
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilg--eeR-~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILG--EER-VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhcc--Cce-EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            59999999999999999999997  210 00111222344444567888899999999999332          222 22


Q ss_pred             HHhhhccCEEEEEEECCCcccH
Q 033075           86 EKYYEEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        86 ~~~~~~~~~~v~v~d~~~~~s~  107 (128)
                      ...+..+|++++|+|.+.+-+-
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~  276 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISE  276 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchH
Confidence            3556889999999999986543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.05  E-value=2.7e-09  Score=79.31  Aligned_cols=92  Identities=18%  Similarity=0.195  Sum_probs=63.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC--------CCcCCcce----EEEEEEECCeEEEEEeCCCCccc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD--------RIVPTVGL----NIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~--------~~~~t~~~----~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      .++.++++++|..++|||||+++|+.....+.+...+        ......|.    ....++.++.++.++|+||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            3578999999999999999999998622111011100        00111222    22334456689999999999988


Q ss_pred             hhhHHHhhhccCEEEEEEECCCcc
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      -......+..+|++++|+|+.+..
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~  181 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGP  181 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCC
Confidence            766666678899999999988653

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.05  E-value=2.1e-09  Score=82.44  Aligned_cols=93  Identities=17%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCC--------------CCCCCCC---------------CcCCcceEEEE
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNV--------------EGLPPDR---------------IVPTVGLNIGR   62 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~--------------~~~~~~~---------------~~~t~~~~~~~   62 (128)
                      ...++.++|+++|.+++|||||+++|+....-+              .+...+.               ...|+......
T Consensus        19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~   98 (632)
T PRK05506         19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY   98 (632)
T ss_pred             ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence            345678999999999999999999998732211              0110000               01123333445


Q ss_pred             EEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        63 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ++.++.++.++|+||++.|.......+..+|++++|+|+...
T Consensus        99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g  140 (632)
T PRK05506         99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG  140 (632)
T ss_pred             EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence            556678899999999988765555567899999999998754

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.04  E-value=1.8e-09  Score=67.93  Aligned_cols=72  Identities=26%  Similarity=0.312  Sum_probs=47.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCC----ccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----PGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~~   93 (128)
                      -|++++|+.++|||||+++|..      ...  .+..|.     .+.+.+   .+.|+||.    ..+..-......+||
T Consensus         2 krimliG~~g~GKTTL~q~L~~------~~~--~~~KTq-----~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad   65 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG------EEI--RYKKTQ-----AIEYYD---NTIDTPGEYIENPRFYHALIVTAQDAD   65 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC------CCC--CcCccc-----eeEecc---cEEECChhheeCHHHHHHHHHHHhhCC
Confidence            3899999999999999999987      211  222222     222322   34899983    223333333446899


Q ss_pred             EEEEEEECCCcc
Q 033075           94 AVVFVIDAACPS  105 (128)
Q Consensus        94 ~~v~v~d~~~~~  105 (128)
                      .++++.|.+++.
T Consensus        66 ~V~ll~dat~~~   77 (143)
T PF10662_consen   66 VVLLLQDATEPR   77 (143)
T ss_pred             EEEEEecCCCCC
Confidence            999999998865

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.03  E-value=4.3e-09  Score=79.67  Aligned_cols=91  Identities=24%  Similarity=0.281  Sum_probs=61.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc------hhhHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL------RSIWEKYY   89 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~   89 (128)
                      ++.+++++|+||+|||||.|+++...... +..   .-.|++--......++.++++.|+||.-.+      +.....|+
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~V-gNw---pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l   77 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKV-GNW---PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL   77 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCcee-cCC---CCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence            45679999999999999999999822222 111   112333334566777888999999995433      22334444


Q ss_pred             --hccCEEEEEEECCCcccHHHH
Q 033075           90 --EEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        90 --~~~~~~v~v~d~~~~~s~~~~  110 (128)
                        ...|+++-|+|.++.++--.+
T Consensus        78 l~~~~D~ivnVvDAtnLeRnLyl  100 (653)
T COG0370          78 LEGKPDLIVNVVDATNLERNLYL  100 (653)
T ss_pred             hcCCCCEEEEEcccchHHHHHHH
Confidence              367999999999997654333

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.03  E-value=3.4e-09  Score=80.92  Aligned_cols=82  Identities=22%  Similarity=0.192  Sum_probs=58.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceEEEEEEE-CCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      -|+++|..++|||||++++...  +. +.++.+.  ..|+...+..+.. ++..+.+||+||+++|.......+..+|++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~--~~-dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~   78 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGV--NA-DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHA   78 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC--CC-ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence            4789999999999999999852  11 2222222  2343333333433 357789999999998866656667899999


Q ss_pred             EEEEECCC
Q 033075           96 VFVIDAAC  103 (128)
Q Consensus        96 v~v~d~~~  103 (128)
                      ++|+|+++
T Consensus        79 lLVVda~e   86 (614)
T PRK10512         79 LLVVACDD   86 (614)
T ss_pred             EEEEECCC
Confidence            99999887

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.02  E-value=3.3e-09  Score=77.53  Aligned_cols=87  Identities=18%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCC-------------CC--CCcCCcceEEEEEEECCe
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-------------PD--RIVPTVGLNIGRIEVSNS   68 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~-------------~~--~~~~t~~~~~~~~~~~~~   68 (128)
                      ++++++|..++|||||+.+++.....+.              +..             ++  +...|+......++.++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999976322110              100             00  011123333455556678


Q ss_pred             EEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        69 ~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ++.++|+||+++|.......+..+|++++|+|+...
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G  116 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG  116 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            999999999998866556677899999999998764

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.02  E-value=3.4e-09  Score=77.22  Aligned_cols=91  Identities=20%  Similarity=0.162  Sum_probs=62.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CC---------CCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GL---------PPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-~~---------~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      .++.++++++|..++|||||+.+|+....+.. ..         .+.+  ...|+......+..++.++.+.|+||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            46789999999999999999999987321110 00         0001  111222222333345678999999999887


Q ss_pred             hhhHHHhhhccCEEEEEEECCCc
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .......+..+|++++|+|+.+.
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g  111 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADG  111 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCC
Confidence            66666667899999999998864

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=3.5e-09  Score=75.45  Aligned_cols=85  Identities=22%  Similarity=0.375  Sum_probs=62.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC------------------eEEEEEeCCC-
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------------------SKLVFWDLGG-   77 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------~~~~~~D~~g-   77 (128)
                      .+++.++|.|++|||||.+.++.  ..  .+..+..+.|+..+...+.+.+                  ..++++|++| 
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~--~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGL   77 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTK--AG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGL   77 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHc--CC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEeccc
Confidence            47899999999999999999998  22  2223455667777655544432                  3588999998 


Q ss_pred             ------CccchhhHHHhhhccCEEEEEEECCCcc
Q 033075           78 ------QPGLRSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        78 ------~~~~~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                            .+.....+...+|.+|+++.|+|++..+
T Consensus        78 V~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~  111 (372)
T COG0012          78 VKGASKGEGLGNKFLDNIREVDAIIHVVRCFGDT  111 (372)
T ss_pred             CCCcccCCCcchHHHHhhhhcCeEEEEEEecCCC
Confidence                  3345556677789999999999998543

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.99  E-value=1.3e-08  Score=77.54  Aligned_cols=101  Identities=15%  Similarity=0.132  Sum_probs=60.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch-------h---hHH
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------S---IWE   86 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~---~~~   86 (128)
                      .++|+++|.+|+||||++|.++.  .+... .......|...........+..+.++||||-....       .   ...
T Consensus       118 slrIvLVGKTGVGKSSLINSILG--ekvf~-vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFG--EVKFS-TDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc--ccccc-ccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            46899999999999999999997  22111 01111233333333344577899999999965421       1   122


Q ss_pred             Hhhh--ccCEEEEEEECCCcccH-H--HHHHHHHHHhcC
Q 033075           87 KYYE--EAHAVVFVIDAACPSRF-E--DSKTALGKFFGM  120 (128)
Q Consensus        87 ~~~~--~~~~~v~v~d~~~~~s~-~--~~~~~l~~~~~~  120 (128)
                      .++.  .+|++++|..++..... +  .+-..+.+++..
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~  233 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP  233 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH
Confidence            3434  47999999887643332 2  233445444443

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.98  E-value=4.1e-09  Score=77.85  Aligned_cols=91  Identities=15%  Similarity=0.199  Sum_probs=65.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC----------------CCC---------CCC--CcCCcceEEEEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------------GLP---------PDR--IVPTVGLNIGRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~----------------~~~---------~~~--~~~t~~~~~~~~~~~   66 (128)
                      .++.++++++|..++|||||+.+|+.......                +.+         +.+  ...|+......++.+
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            46789999999999999999999986322110                000         000  111233333455666


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      +..+.+.|+||+.+|.......+..+|++++|+|++..
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G  121 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG  121 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence            78999999999999877777778999999999998864

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.97  E-value=1e-08  Score=69.46  Aligned_cols=87  Identities=24%  Similarity=0.234  Sum_probs=54.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh-ccCCCC----------------CCCCCCcCCcceE-----------------EEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV-YSNVEG----------------LPPDRIVPTVGLN-----------------IGRIE   64 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~-~~~~~~----------------~~~~~~~~t~~~~-----------------~~~~~   64 (128)
                      |++++|+.++|||||+.++... ..+..+                ..........|++                 ...++
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999861 111000                0000000011111                 12334


Q ss_pred             ECCeEEEEEeCCCCccchhhHHHhhh--ccCEEEEEEECCCcc
Q 033075           65 VSNSKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPS  105 (128)
Q Consensus        65 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~v~v~d~~~~~  105 (128)
                      ..+..+.+.|+||+++|.......+.  .+|++++|+|+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~  123 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI  123 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC
Confidence            45678999999999988665444443  689999999987643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PLN03127 Elongation factor Tu; Provisional

Probab=98.97  E-value=1.5e-08  Score=74.85  Aligned_cols=91  Identities=19%  Similarity=0.139  Sum_probs=61.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCC----------CCCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV----------EGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~----------~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      .++.++|+++|..++|||||+++|.....+.          -+..+.+  ...|+......++.++.++.+.|+||+++|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            4678999999999999999999997421110          0000111  112333333444445688999999999887


Q ss_pred             hhhHHHhhhccCEEEEEEECCCc
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      -.........+|++++|+|+.+.
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g  160 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDG  160 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCC
Confidence            66555556789999999998764

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.97  E-value=5.5e-09  Score=75.12  Aligned_cols=85  Identities=16%  Similarity=0.313  Sum_probs=45.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-CCcCCcceEEEEEEECC-eEEEEEeCCCCccchhhHHHh---
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKY---   88 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~---   88 (128)
                      .+..++|+++|.+|+|||||+|.+.+..++-++..+. ....|...  ..+.... -++.+||+||..........|   
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~--~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~  109 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP--TPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKE  109 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---EEEE-SS-TTEEEEEE--GGGSS--HHHHHHH
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--eeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHH
Confidence            3578899999999999999999997632321121111 11122221  2222233 569999999965443333344   


Q ss_pred             --hhccCEEEEEEE
Q 033075           89 --YEEAHAVVFVID  100 (128)
Q Consensus        89 --~~~~~~~v~v~d  100 (128)
                        +...|.++++.+
T Consensus       110 ~~~~~yD~fiii~s  123 (376)
T PF05049_consen  110 VKFYRYDFFIIISS  123 (376)
T ss_dssp             TTGGG-SEEEEEES
T ss_pred             ccccccCEEEEEeC
Confidence              456788777665

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.97  E-value=8.7e-09  Score=72.62  Aligned_cols=97  Identities=26%  Similarity=0.337  Sum_probs=65.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC-CeEEEEEeCCCCc-------cchhhHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQP-------GLRSIWEKYY   89 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~-------~~~~~~~~~~   89 (128)
                      .-|.+||.|++|||||++.+.....++.    +..+.|+-.+...+... +..+.+-|+||.-       .....+..++
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIa----dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI  235 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIA----DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHI  235 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCccc----CCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHH
Confidence            3578999999999999999998555553    23334444444455543 4679999999822       2233456777


Q ss_pred             hccCEEEEEEECCCccc---HHHHHHHHHHHh
Q 033075           90 EEAHAVVFVIDAACPSR---FEDSKTALGKFF  118 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s---~~~~~~~l~~~~  118 (128)
                      +.|.+++.|+|++..+.   .+..+....++.
T Consensus       236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~  267 (369)
T COG0536         236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELE  267 (369)
T ss_pred             HhhheeEEEEecCcccCCCHHHHHHHHHHHHH
Confidence            89999999999996553   444444444443

>PRK00007 elongation factor G; Reviewed

Probab=98.96  E-value=1.5e-08  Score=78.62  Aligned_cols=92  Identities=17%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCC------------CCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      .+..+|+++|..++|||||+++|+.......  +...            .+...|+......+.+.+..+.+.||||...
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            3466999999999999999999985222110  0000            0111233333456777889999999999988


Q ss_pred             chhhHHHhhhccCEEEEEEECCCccc
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      +.......++.+|++++|+|+...-.
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~  113 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVE  113 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcc
Confidence            77666777899999999999876543

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.94  E-value=8e-09  Score=73.51  Aligned_cols=72  Identities=21%  Similarity=0.380  Sum_probs=59.8

Q ss_pred             CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc----------cHHHHHHHHHHHhcCcccc
Q 033075           55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS----------RFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------s~~~~~~~l~~~~~~~~~~  124 (128)
                      |.|+....+++++..+.++|++|++.-+.-|..++.++++++||+++++=+          .+.+.....+.+++++...
T Consensus       182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~  261 (354)
T KOG0082|consen  182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA  261 (354)
T ss_pred             cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence            778877888889999999999999999999999999999999999988532          3456666788888877665


Q ss_pred             cC
Q 033075          125 ER  126 (128)
Q Consensus       125 ~~  126 (128)
                      +-
T Consensus       262 ~t  263 (354)
T KOG0082|consen  262 NT  263 (354)
T ss_pred             cC
Confidence            53

>PRK12740 elongation factor G; Reviewed

Probab=98.94  E-value=1.3e-08  Score=78.61  Aligned_cols=88  Identities=20%  Similarity=0.150  Sum_probs=64.3

Q ss_pred             EcCCCCCHHHHHHHHHhhccCCC--CC------CCC------CCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHh
Q 033075           23 LGIDKAGKTTLLEKLKSVYSNVE--GL------PPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        23 ~G~~~~GKTsl~~~l~~~~~~~~--~~------~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      +|..++|||||+++|+.......  +.      ..+      +...|++.....+.+.+..+.+||+||...+...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            58999999999999976322110  00      000      11234444556777888999999999999887778888


Q ss_pred             hhccCEEEEEEECCCcccHHHH
Q 033075           89 YEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                      ++.+|++++|+|.++.......
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~  102 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE  102 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH
Confidence            9999999999999987665544

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.93  E-value=7.2e-09  Score=76.58  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=64.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------------------------CCCCCC--CcCCcceEEEEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPDR--IVPTVGLNIGRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------------------------~~~~~~--~~~t~~~~~~~~~~~   66 (128)
                      .++.++++++|..++|||||+-+|+.......                         +..+.+  ..-|+......++.+
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            36789999999999999999999876322110                         000001  111222323344555


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                      +..+.+.|+||+++|.......+..+|++++|+|+++
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~  120 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT  120 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence            6899999999999998887888899999999999987

>TIGR00092 GTP-binding protein YchF

Probab=98.93  E-value=1.8e-08  Score=72.40  Aligned_cols=83  Identities=20%  Similarity=0.291  Sum_probs=59.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCCCcc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQPG   80 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~   80 (128)
                      +++.++|.|++|||||++.+.....   +......+.|+..+...+.+.+                 ..+.+.|+||.-.
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~---~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~   79 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLG---NEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG   79 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCc---cccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc
Confidence            7899999999999999999998222   0111223445666666666554                 3689999998332


Q ss_pred             -------chhhHHHhhhccCEEEEEEECCC
Q 033075           81 -------LRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        81 -------~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                             ........++.+|+++.|+++.+
T Consensus        80 gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        80 GASKGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             chhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                   33355567799999999999864

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.92  E-value=3.1e-08  Score=65.27  Aligned_cols=98  Identities=26%  Similarity=0.327  Sum_probs=59.9

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCC----------Cc
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGG----------QP   79 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g----------~~   79 (128)
                      +......-|+++|.++||||||+|.+++      .+.-.....|.|.+  ..-+++++ .+.+.|.||          .+
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~------~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e   91 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTN------QKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKE   91 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhC------CcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHH
Confidence            3344677899999999999999999998      22112222333322  12223332 388999999          33


Q ss_pred             cchhhHHHhhh---ccCEEEEEEECCCcccH--HHHHHHHHH
Q 033075           80 GLRSIWEKYYE---EAHAVVFVIDAACPSRF--EDSKTALGK  116 (128)
Q Consensus        80 ~~~~~~~~~~~---~~~~~v~v~d~~~~~s~--~~~~~~l~~  116 (128)
                      .+..+...|++   +..+++.++|+..+-.-  .+.-+|+.+
T Consensus        92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~  133 (200)
T COG0218          92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE  133 (200)
T ss_pred             HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH
Confidence            34455566665   35677888898765433  233445544

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.92  E-value=5.1e-09  Score=63.84  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +|++++|+.|+|||+|+.++..
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~   22 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQ   22 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhc
Confidence            5899999999999999999977

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.87  E-value=1.3e-08  Score=69.38  Aligned_cols=98  Identities=22%  Similarity=0.254  Sum_probs=69.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhhHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWE   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~   86 (128)
                      ....+++++|-|.+|||||+..+...+++.    ....+.|...-...+.+++..+++.|.||.-+        -++. .
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~Sea----A~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQv-i  134 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEA----ASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQV-I  134 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhh----hceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceE-E
Confidence            356799999999999999999998743332    22334455455678889999999999998221        1222 2


Q ss_pred             HhhhccCEEEEEEECCCcccHH-HHHHHHHHH
Q 033075           87 KYYEEAHAVVFVIDAACPSRFE-DSKTALGKF  117 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~-~~~~~l~~~  117 (128)
                      ...+.+|++++|.|.+..+.-. -+...++.+
T Consensus       135 avArtaDlilMvLDatk~e~qr~~le~ELe~v  166 (364)
T KOG1486|consen  135 AVARTADLILMVLDATKSEDQREILEKELEAV  166 (364)
T ss_pred             EEeecccEEEEEecCCcchhHHHHHHHHHHHh
Confidence            3347899999999999865443 445566655

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.84  E-value=2.1e-08  Score=70.69  Aligned_cols=86  Identities=23%  Similarity=0.358  Sum_probs=63.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCC-
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG-   77 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g-   77 (128)
                      .++++.+||.|++||||++|.+..  ...  ..-...+.|++.+...+.+.+                 ..++++|++| 
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~--~~a--~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL   94 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTK--SKA--GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL   94 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhc--CCC--CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence            578999999999999999999998  222  122344567777766665543                 3589999998 


Q ss_pred             ------CccchhhHHHhhhccCEEEEEEECCCcc
Q 033075           78 ------QPGLRSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        78 ------~~~~~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                            .+....-+...++.+|+++-|+++....
T Consensus        95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~  128 (391)
T KOG1491|consen   95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDT  128 (391)
T ss_pred             ccCcccCcCchHHHHHhhhhccceeEEEEecCcc
Confidence                  2334445566779999999999887544

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.82  E-value=5.7e-08  Score=62.51  Aligned_cols=48  Identities=27%  Similarity=0.277  Sum_probs=34.4

Q ss_pred             eEEEEEeCCCCc----cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075           68 SKLVFWDLGGQP----GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG  115 (128)
Q Consensus        68 ~~~~~~D~~g~~----~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~  115 (128)
                      ..+.++|+||-.    ....++..++..+|++++|.+.++.-+-.....+.+
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~  152 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQ  152 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHH
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHH
Confidence            358899999943    233677888899999999999988554444433333

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.81  E-value=3.7e-09  Score=70.97  Aligned_cols=102  Identities=18%  Similarity=0.344  Sum_probs=69.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCccchh-----hHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRS-----IWEKYY   89 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~-----~~~~~~   89 (128)
                      ..-|++++|.+|+||||+-..+...+.   ........+|+++....+.+-| .-+.+||++|++.+-.     .....+
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~---a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF   79 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYI---ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIF   79 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhh---hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhh
Confidence            356899999999999999777664111   1111244567777777776655 8899999999985422     334567


Q ss_pred             hccCEEEEEEECCCccc---HHHHHHHHHHHhcC
Q 033075           90 EEAHAVVFVIDAACPSR---FEDSKTALGKFFGM  120 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s---~~~~~~~l~~~~~~  120 (128)
                      ++.+++++|||++..+-   +..-+.-++.+++.
T Consensus        80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~  113 (295)
T KOG3886|consen   80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN  113 (295)
T ss_pred             eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc
Confidence            89999999999998642   33334444444443

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=1.1e-08  Score=73.61  Aligned_cols=92  Identities=20%  Similarity=0.268  Sum_probs=63.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCCC-----------C--CCcCCcceEEEEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP-----------D--RIVPTVGLNIGRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~~-----------~--~~~~t~~~~~~~~~~~   66 (128)
                      .+++++++++|...+|||||+-+|+.....+.              ++..           .  +...|+......++-+
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            46899999999999999999999977422210              1100           0  0011233333444455


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      .+.+++.|+||++.|-.-...-..++|+.|+|+|+.+.+
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e  122 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE  122 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence            588999999998888665555568899999999998864

>cd01882 BMS1 Bms1

Probab=98.78  E-value=1.7e-07  Score=63.49  Aligned_cols=82  Identities=23%  Similarity=0.309  Sum_probs=54.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      .+...|+++|.+++|||||++.+......      .......|. +......+.++.++|+||.-  ..+. ...+.+|+
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~------~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDv  106 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTK------QNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAMI-DIAKVADL  106 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhccc------Ccccccccc-EEEEecCCceEEEEeCCchH--HHHH-HHHHhcCE
Confidence            34567999999999999999999872111      111111221 11223356889999999853  3333 34588999


Q ss_pred             EEEEEECCCccc
Q 033075           95 VVFVIDAACPSR  106 (128)
Q Consensus        95 ~v~v~d~~~~~s  106 (128)
                      +++++|.+....
T Consensus       107 VllviDa~~~~~  118 (225)
T cd01882         107 VLLLIDASFGFE  118 (225)
T ss_pred             EEEEEecCcCCC
Confidence            999999886443

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.77  E-value=3.6e-08  Score=62.08  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-CcCCcceEEEEEEECCeEEEEEeCCCC
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNIGRIEVSNSKLVFWDLGGQ   78 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~   78 (128)
                      +++++|.+|+|||||+|++..      ...... ..+..+.....+.+++ .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVG------KKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhC------CCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence            899999999999999999987      222111 1111112223444433 6899999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.76  E-value=1.2e-07  Score=74.01  Aligned_cols=91  Identities=14%  Similarity=0.045  Sum_probs=61.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-----C-------cCCcceEEEEEEE----CCeEEEEEeCCCCc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-----I-------VPTVGLNIGRIEV----SNSKLVFWDLGGQP   79 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-----~-------~~t~~~~~~~~~~----~~~~~~~~D~~g~~   79 (128)
                      +.-+|+++|..++|||||+.+++....-+.....+.     +       .-|+......+.+    .+..+.++|+||..
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            445799999999999999999986322111000000     0       0111111222222    35789999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCccc
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      +|.......++.+|++++|+|+...-.
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~  125 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVM  125 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCC
Confidence            998888888999999999999887533

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.72  E-value=8.3e-08  Score=75.88  Aligned_cols=92  Identities=12%  Similarity=0.016  Sum_probs=62.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC----------C--CcCCcceEEEEEEE----------------C
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD----------R--IVPTVGLNIGRIEV----------------S   66 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~----------~--~~~t~~~~~~~~~~----------------~   66 (128)
                      .+..+|+++|..++|||||+.+++....-+......          +  ...|+......+.+                .
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            356699999999999999999998732211000000          0  00111111122333                2


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      +..+.++|+||+.+|.......++.+|++++|+|+...-.
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~  136 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC  136 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc
Confidence            4778999999999998888888899999999999887544

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.71  E-value=3.5e-07  Score=63.95  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=35.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-CC---CCCcCCcceEEEE--EEECC--eEEEEEeCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PP---DRIVPTVGLNIGR--IEVSN--SKLVFWDLGG   77 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-~~---~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g   77 (128)
                      -.++|+++|.+|+|||||++.|+......... ..   .....+.......  +.-++  .+++++||||
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG   72 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG   72 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence            36899999999999999999999821111110 00   0111222232222  22233  6799999999

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PTZ00416 elongation factor 2; Provisional

Probab=98.70  E-value=1.3e-07  Score=74.74  Aligned_cols=91  Identities=14%  Similarity=0.045  Sum_probs=61.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCC----CCC------CCC--CcCCcceEEEEEEEC----------CeEEEEE
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE----GLP------PDR--IVPTVGLNIGRIEVS----------NSKLVFW   73 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~----~~~------~~~--~~~t~~~~~~~~~~~----------~~~~~~~   73 (128)
                      +..+|+++|..++|||||+.+|+....-+.    +..      +.+  ...|+......+.+.          +..+.+.
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            455999999999999999999987322110    000      000  001111111223333          4679999


Q ss_pred             eCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075           74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        74 D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      |+||..+|.......++.+|++++|+|+.+.-.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~  130 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC  130 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC
Confidence            999999988877888899999999999887533

>cd01858 NGP_1 NGP-1

Probab=98.66  E-value=1.2e-07  Score=60.72  Aligned_cols=24  Identities=25%  Similarity=0.553  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +..+++++|.+|+|||||+|++..
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~  124 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRS  124 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhc
Confidence            567899999999999999999987

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.64  E-value=3.9e-07  Score=67.66  Aligned_cols=94  Identities=27%  Similarity=0.398  Sum_probs=66.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC------eEEEEEeCCCCccchhhHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      ...-.|+++|..++|||||+.+|..      .+   ...++.+..+....+.+      .++.+|-+.|...+..+.+..
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~------~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~   93 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQG------IE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFA   93 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhc------cC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhccc
Confidence            3567999999999999999999865      22   23345555544444433      578999999987787777665


Q ss_pred             hhc----cCEEEEEEECCCcccH-HHHHHHHHHH
Q 033075           89 YEE----AHAVVFVIDAACPSRF-EDSKTALGKF  117 (128)
Q Consensus        89 ~~~----~~~~v~v~d~~~~~s~-~~~~~~l~~~  117 (128)
                      +..    --.+|+|+|.+.|-.+ +.+..|+.-+
T Consensus        94 lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl  127 (472)
T PF05783_consen   94 LTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVL  127 (472)
T ss_pred             CCcccccceEEEEEecCCChHHHHHHHHHHHHHH
Confidence            543    2477899999998654 4666666544

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.62  E-value=1.3e-07  Score=61.61  Aligned_cols=54  Identities=24%  Similarity=0.409  Sum_probs=35.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECCeEEEEEeCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGG   77 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g   77 (128)
                      ..++++++|.+++|||||+|++...  +.    . ...+..|...  ..+.+ +.++.++|+||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~--~~----~-~~~~~pg~T~~~~~~~~-~~~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRS--RA----C-NVGATPGVTKSMQEVHL-DKKVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCc--cc----c-eecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence            3489999999999999999999971  11    0 1112222221  12222 34688999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01856 YlqF YlqF

Probab=98.58  E-value=2.7e-07  Score=59.89  Aligned_cols=54  Identities=24%  Similarity=0.422  Sum_probs=35.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECCeEEEEEeCCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQ   78 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~   78 (128)
                      ..++++++|.+++|||||++++..      .....   ....|...  ..+.++ ..+.++||||-
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~------~~~~~~~~~~~~T~~~--~~~~~~-~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRG------KKVAKVGNKPGVTKGI--QWIKIS-PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhC------CCceeecCCCCEEeee--EEEEec-CCEEEEECCCC
Confidence            457999999999999999999997      22211   11122222  223332 56889999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01859 MJ1464 MJ1464

Probab=98.57  E-value=3.3e-07  Score=58.45  Aligned_cols=55  Identities=25%  Similarity=0.402  Sum_probs=37.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECCeEEEEEeCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSNSKLVFWDLGG   77 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g   77 (128)
                      ...+++++|.+++||||+++++..      .. ...+.++.|.+.. .+...+..+.+||+||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~------~~-~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKG------RH-SASTSPSPGYTKGEQLVKITSKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC------CC-ccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence            467899999999999999999986      21 2233444454321 1111234789999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.56  E-value=5.8e-07  Score=63.48  Aligned_cols=96  Identities=20%  Similarity=0.283  Sum_probs=69.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC------eEEEEEeCCCCccchhhHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      ..-.|+++|+.++|||||+.++..      .+   ...+-.|..+..+.+.+      .++.+|-+.|+.....+.+..+
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg------~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al  121 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQG------SE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFAL  121 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhc------cc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcc
Confidence            456899999999999999999886      21   33444555555554443      5788899999888777777666


Q ss_pred             hcc----CEEEEEEECCCc-ccHHHHHHHHHHHhcC
Q 033075           90 EEA----HAVVFVIDAACP-SRFEDSKTALGKFFGM  120 (128)
Q Consensus        90 ~~~----~~~v~v~d~~~~-~s~~~~~~~l~~~~~~  120 (128)
                      ...    ..+|++.|++++ .-++.++.|..-+.++
T Consensus       122 ~ats~aetlviltasms~Pw~~lesLqkWa~Vl~eh  157 (473)
T KOG3905|consen  122 PATSLAETLVILTASMSNPWTLLESLQKWASVLREH  157 (473)
T ss_pred             cccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence            433    467888899999 6667888887766544

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.55  E-value=6.9e-07  Score=66.91  Aligned_cols=97  Identities=21%  Similarity=0.359  Sum_probs=66.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce--EEEEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      .++.++|.++|+.++|||.+++.+++      ....+.+..+...  .+..+...+  .-+.+-|++.. ....+.... 
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflg------r~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-  493 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLG------RSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-  493 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhc------cccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-
Confidence            46789999999999999999999998      3333333233222  233444445  45677777754 333333333 


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      ..||+++++||.+++.+|+.....++...
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~  522 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYLAEVYNKYF  522 (625)
T ss_pred             ceeeeEEEecccCCchHHHHHHHHHHHhh
Confidence            78999999999999999998877665543

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.54  E-value=1.8e-06  Score=58.53  Aligned_cols=90  Identities=14%  Similarity=0.121  Sum_probs=57.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE---CCeEEEEEeCCCCccch------hhH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLR------SIW   85 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~------~~~   85 (128)
                      .+..-|.++|++++|||+|+|.+...... ..........|.|+.......   .+..+.+.|++|.....      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~-f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSG-FDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCC-eEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            35567889999999999999999982101 111223345667766554444   24889999999954321      122


Q ss_pred             HHhhhc--cCEEEEEEECCCcc
Q 033075           86 EKYYEE--AHAVVFVIDAACPS  105 (128)
Q Consensus        86 ~~~~~~--~~~~v~v~d~~~~~  105 (128)
                      ...+..  ++++|+..+.....
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccH
Confidence            333344  78888877766544

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.51  E-value=4.8e-07  Score=63.08  Aligned_cols=57  Identities=30%  Similarity=0.393  Sum_probs=36.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ   78 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~   78 (128)
                      +.++++++|.+|+|||||+|++...  .. .........|...  ..+.+. ..+.++|+||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~--~~-~~~~~~~g~T~~~--~~~~~~-~~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGK--KV-AKVGNRPGVTKGQ--QWIKLS-DGLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC--Cc-cccCCCCCeecce--EEEEeC-CCEEEEECCCc
Confidence            4689999999999999999999871  11 0111111122222  223332 36899999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=98.49  E-value=3.9e-07  Score=60.00  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+++++|.+|+|||||+|.+..
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~  149 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLK  149 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999987

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.49  E-value=6.5e-07  Score=62.78  Aligned_cols=58  Identities=24%  Similarity=0.343  Sum_probs=36.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   79 (128)
                      ..++++++|.+++|||||+|++...  +. .........|.+.  ..+.+ +..+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~--~~-~~~~~~~g~T~~~--~~~~~-~~~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGK--KI-AKTGNRPGVTKAQ--QWIKL-GKGLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC--Cc-cccCCCCCeEEEE--EEEEe-CCcEEEEECCCcC
Confidence            5689999999999999999999871  11 0111111122222  22222 3468899999953

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.45  E-value=1.1e-06  Score=62.05  Aligned_cols=88  Identities=22%  Similarity=0.345  Sum_probs=61.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCC---------ccchhhHH
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQ---------PGLRSIWE   86 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~---------~~~~~~~~   86 (128)
                      .--|.++|-.++|||||++.+..  ..  -...+..+.|.+.......... ..+.+.||-|-         ..|+... 
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~--Aa--l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATL-  252 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTK--AA--LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATL-  252 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHh--hh--cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHH-
Confidence            44689999999999999999986  21  2334566777777655555544 77888999981         1222222 


Q ss_pred             HhhhccCEEEEEEECCCcccHHH
Q 033075           87 KYYEEAHAVVFVIDAACPSRFED  109 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~  109 (128)
                      .....+|+++-|+|++.|+--+.
T Consensus       253 eeVaeadlllHvvDiShP~ae~q  275 (410)
T KOG0410|consen  253 EEVAEADLLLHVVDISHPNAEEQ  275 (410)
T ss_pred             HHHhhcceEEEEeecCCccHHHH
Confidence            22367999999999999874433

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=2.7e-06  Score=65.92  Aligned_cols=100  Identities=18%  Similarity=0.091  Sum_probs=72.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCCC-----C---cCCcc----eEEEEEEECC-eEEEEEeCCCCc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPDR-----I---VPTVG----LNIGRIEVSN-SKLVFWDLGGQP   79 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~~-----~---~~t~~----~~~~~~~~~~-~~~~~~D~~g~~   79 (128)
                      .+.-+|.++|.-.+|||||..+++.....++  ++..+-     +   .-..|    ....++.+.+ ..+.+.||||+-
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            4566899999999999999999987433321  111100     0   01122    2234667785 999999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL  114 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l  114 (128)
                      +|.......++-+|+++.|+|+...-..+...-|-
T Consensus        88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~r  122 (697)
T COG0480          88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR  122 (697)
T ss_pred             ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHH
Confidence            99999999999999999999999866555444443

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=5.5e-06  Score=59.40  Aligned_cols=60  Identities=25%  Similarity=0.467  Sum_probs=38.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-----CCCCCcCCcceEEEEEEE--CC--eEEEEEeCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-----PPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGG   77 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-----~~~~~~~t~~~~~~~~~~--~~--~~~~~~D~~g   77 (128)
                      -.+.++++|++|.|||||+|.|+..  +..+.     .......+..+......+  ++  .++++.||||
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~--~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPG   88 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLT--DLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPG   88 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhh--hccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCC
Confidence            4699999999999999999998872  11111     111112233443333333  33  7899999999

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.41  E-value=7.8e-07  Score=63.34  Aligned_cols=57  Identities=21%  Similarity=0.261  Sum_probs=36.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE-ECCeEEEEEeCCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ   78 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~   78 (128)
                      ++..+++++|-|++|||||+|+|.....       ....+..|.+-.... .-+..+.++||||.
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-------~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-------AKTSNRPGTTKGIQWIKLDDGIYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccc-------eeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence            3568899999999999999999998222       122222233321111 12345899999994

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.40  E-value=1.4e-06  Score=55.56  Aligned_cols=57  Identities=18%  Similarity=0.251  Sum_probs=36.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g   77 (128)
                      ....+++++|.+++||||++|.+......   ........|.....  +.. +..+.+.|+||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~---~~~~~~~~t~~~~~--~~~-~~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKL---KVGNVPGTTTSQQE--VKL-DNKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccc---cccCCCCcccceEE--EEe-cCCEEEEECCC
Confidence            46788999999999999999999971110   00111222333222  222 35689999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.38  E-value=1.1e-05  Score=57.70  Aligned_cols=64  Identities=23%  Similarity=0.323  Sum_probs=41.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCC---CCCCC-CcCCcceEEEEEEEC--C--eEEEEEeCCC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG---LPPDR-IVPTVGLNIGRIEVS--N--SKLVFWDLGG   77 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~---~~~~~-~~~t~~~~~~~~~~~--~--~~~~~~D~~g   77 (128)
                      +.-.+.|+++|++|.||||++|.++..+-....   ..... ..+++.+......+.  +  .++++.||||
T Consensus        20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG   91 (373)
T COG5019          20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG   91 (373)
T ss_pred             cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence            356899999999999999999999984111100   01111 234444444333333  3  7899999999

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.34  E-value=1.1e-06  Score=65.60  Aligned_cols=94  Identities=23%  Similarity=0.355  Sum_probs=71.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      -+++|+.++|..++|||+|+++++.      +.+.+...+--|-....+..++  .-+.+.|.+|...     .+|...+
T Consensus        28 ipelk~givg~~~sgktalvhr~lt------gty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wv   96 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLT------GTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWV   96 (749)
T ss_pred             cchhheeeeecccCCceeeeeeecc------ceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhc
Confidence            4789999999999999999999998      7776666554443333443444  5677888777332     4666889


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      |++||||.+.+..+|+.++..-.++..
T Consensus        97 davIfvf~~~d~~s~q~v~~l~~~l~~  123 (749)
T KOG0705|consen   97 DAVVFVFSVEDEQSFQAVQALAHEMSS  123 (749)
T ss_pred             cceEEEEEeccccCHHHHHHHHhhccc
Confidence            999999999999999988776555543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.30  E-value=2.4e-06  Score=61.44  Aligned_cols=20  Identities=25%  Similarity=0.521  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++++|.+|||||||+|+|+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~  227 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLP  227 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcc
Confidence            78999999999999999987

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.28  E-value=3.3e-06  Score=58.13  Aligned_cols=49  Identities=24%  Similarity=0.577  Sum_probs=41.5

Q ss_pred             CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC
Q 033075           55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                      |.|+-...+.++..+++.+|++|++.-+..|.+++.+..+++||+.++.
T Consensus       189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs  237 (379)
T KOG0099|consen  189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS  237 (379)
T ss_pred             ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence            4555555666677889999999999999999999999999999998774

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.26  E-value=6e-06  Score=56.72  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.++++|.+|+|||||+|.+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~  142 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDP  142 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4789999999999999999987

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=7.8e-06  Score=61.20  Aligned_cols=102  Identities=16%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-----CCCC------CCcCCcceEEEEEEECC---eEEEEEeCCCCccc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-----LPPD------RIVPTVGLNIGRIEVSN---SKLVFWDLGGQPGL   81 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~-----~~~~------~~~~t~~~~~~~~~~~~---~~~~~~D~~g~~~~   81 (128)
                      +.-++.++..-.=|||||..+++....-+..     +.-+      +.--|+-.+..++.+.+   +-+.+.||||+-+|
T Consensus        59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF  138 (650)
T KOG0462|consen   59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF  138 (650)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence            3446778888888999999999985442211     1111      11113333445666666   88999999999999


Q ss_pred             hhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      .....+.+..|+++++|+|++..-.-+....++.-+
T Consensus       139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf  174 (650)
T KOG0462|consen  139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF  174 (650)
T ss_pred             cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH
Confidence            999899999999999999999877666655544443

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=1.1e-05  Score=58.94  Aligned_cols=92  Identities=23%  Similarity=0.220  Sum_probs=63.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccC------CCCCCCCCC--------cCCcceE----EEEEEECCeEEEEEeCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSN------VEGLPPDRI--------VPTVGLN----IGRIEVSNSKLVFWDLGG   77 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~------~~~~~~~~~--------~~t~~~~----~~~~~~~~~~~~~~D~~g   77 (128)
                      ++-..+++-.|.+|||||-..++....-      ..++.....        ....|+.    .-.+++.+..+.+.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            3446788999999999999998652110      001111111        1123332    234556779999999999


Q ss_pred             CccchhhHHHhhhccCEEEEEEECCCcccH
Q 033075           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~  107 (128)
                      +++|.....+-+..+|..|+|+|+...-.-
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~  120 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEP  120 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccH
Confidence            999999888889999999999999875433

>PRK12289 GTPase RsgA; Reviewed

Probab=98.22  E-value=6e-06  Score=59.49  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|.+|||||||+|.|+.
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~  194 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIP  194 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcC
Confidence            389999999999999999986

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=1.1e-05  Score=60.02  Aligned_cols=87  Identities=22%  Similarity=0.297  Sum_probs=62.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE---CCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +..=|.++|.-.-|||||+..+..  ++.......-..--+|-.  .+..   +...+++.||||++.|..++.+=..-+
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~--t~Va~~EaGGITQhIGA~--~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vt   79 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRK--TNVAAGEAGGITQHIGAY--QVPLDVIKIPGITFIDTPGHEAFTAMRARGASVT   79 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhc--CccccccCCceeeEeeeE--EEEeccCCCceEEEEcCCcHHHHHHHHhcCCccc
Confidence            344578999999999999999987  332222222222223322  3333   237899999999999999999888899


Q ss_pred             CEEEEEEECCCccc
Q 033075           93 HAVVFVIDAACPSR  106 (128)
Q Consensus        93 ~~~v~v~d~~~~~s  106 (128)
                      |.+++|+++.|.--
T Consensus        80 DIaILVVa~dDGv~   93 (509)
T COG0532          80 DIAILVVAADDGVM   93 (509)
T ss_pred             cEEEEEEEccCCcc
Confidence            99999999998543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.20  E-value=1.9e-06  Score=55.39  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --++++|++|||||||+|.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~   57 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLP   57 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999999988

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=8.1e-06  Score=61.67  Aligned_cols=80  Identities=23%  Similarity=0.352  Sum_probs=52.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      ++.+-++++|++|.|||||++.+..++++-   ..++.   .| .+..+.-...+++++.+|  .....+..- ..-+|+
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~---ti~~i---~G-PiTvvsgK~RRiTflEcp--~Dl~~miDv-aKIaDL  136 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ---TIDEI---RG-PITVVSGKTRRITFLECP--SDLHQMIDV-AKIADL  136 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHh---hhhcc---CC-ceEEeecceeEEEEEeCh--HHHHHHHhH-HHhhhe
Confidence            567888999999999999999998855541   11111   11 112222234789999988  444455433 367888


Q ss_pred             EEEEEECCCc
Q 033075           95 VVFVIDAACP  104 (128)
Q Consensus        95 ~v~v~d~~~~  104 (128)
                      +++++|.+-.
T Consensus       137 VlLlIdgnfG  146 (1077)
T COG5192         137 VLLLIDGNFG  146 (1077)
T ss_pred             eEEEeccccC
Confidence            8888887753

>smart00053 DYNc Dynamin, GTPase

Probab=98.19  E-value=5.7e-05  Score=51.75  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+++++|+.++||||+++.+..
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g   48 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVG   48 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhC
Confidence            455899999999999999999986

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.18  E-value=4.1e-06  Score=57.60  Aligned_cols=89  Identities=24%  Similarity=0.279  Sum_probs=60.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECCeEEEEEeCCCCcc--------chhhHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNSKLVFWDLGGQPG--------LRSIWE   86 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~D~~g~~~--------~~~~~~   86 (128)
                      ..-+|.++|-|.+||||++..+....++.    + .++.|.-.. ...+.+.+-.+++.|.||.-+        -++. .
T Consensus        58 g~a~vg~vgFPSvGksTl~~~l~g~~s~v----a-syefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qv-i  131 (358)
T KOG1487|consen   58 GDARVGFVGFPSVGKSTLLSKLTGTFSEV----A-AYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQV-I  131 (358)
T ss_pred             cceeeeEEecCccchhhhhhhhcCCCCcc----c-cccceeEEEecceEeccccceeeecCcchhcccccCCCCccEE-E
Confidence            34589999999999999999998732322    1 222222222 245557778999999998221        1222 2


Q ss_pred             HhhhccCEEEEEEECCCcccHHHH
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                      .-.+.|+++++|.|+..|-+-..+
T Consensus       132 avartcnli~~vld~~kp~~hk~~  155 (358)
T KOG1487|consen  132 AVARTCNLIFIVLDVLKPLSHKKI  155 (358)
T ss_pred             EEeecccEEEEEeeccCcccHHHH
Confidence            344789999999999998776655

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.18  E-value=8.1e-06  Score=60.73  Aligned_cols=93  Identities=17%  Similarity=0.132  Sum_probs=59.8

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcceEEE---------------EEE-----------
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG---------------RIE-----------   64 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~~~~~---------------~~~-----------   64 (128)
                      ..++..++|+++|.-..|||||++.|.....+...+.. .-.....|+...               ...           
T Consensus        29 ~~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (460)
T PTZ00327         29 ISRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPG  108 (460)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccc
Confidence            45688999999999999999999999863221100000 000001111100               000           


Q ss_pred             -----ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           65 -----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        65 -----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                           .-...+.+.|+||++.|-.....-...+|++++|+|+.+.
T Consensus       109 ~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g  153 (460)
T PTZ00327        109 CGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES  153 (460)
T ss_pred             ccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence                 0013689999999998866555666899999999999874

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.14  E-value=7.9e-05  Score=54.72  Aligned_cols=26  Identities=19%  Similarity=0.456  Sum_probs=23.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ...+.|+++|+.++|||||+|+|..+
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q   40 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMEL   40 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhh
Confidence            36889999999999999999999884

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=3.5e-05  Score=59.15  Aligned_cols=95  Identities=19%  Similarity=0.155  Sum_probs=64.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCc------CCcceEE----EEEEECC-----eEEEEEeCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIV------PTVGLNI----GRIEVSN-----SKLVFWDLG   76 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~------~t~~~~~----~~~~~~~-----~~~~~~D~~   76 (128)
                      ....+++++|.-+.|||+|+..+..+.+.-.....+   .+.      ...|..+    .++-..+     +-+.+.|+|
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            356789999999999999999998743321000000   010      0122221    1222222     558899999


Q ss_pred             CCccchhhHHHhhhccCEEEEEEECCCcccHHH
Q 033075           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED  109 (128)
Q Consensus        77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~  109 (128)
                      |+-.|.......++.+|++++++|+.+.-.+..
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt  238 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT  238 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeH
Confidence            999999888889999999999999998766543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.14  E-value=2.3e-05  Score=50.28  Aligned_cols=55  Identities=22%  Similarity=0.258  Sum_probs=35.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLG   76 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~   76 (128)
                      +..+||++.|+||+||||++.++.....+       .-....|+....+.-++  .-+.+.|+.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~-------~g~kvgGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLRE-------KGYKVGGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHh-------cCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence            35789999999999999999999862221       11223344444444444  446666766

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.13  E-value=1.8e-05  Score=54.00  Aligned_cols=62  Identities=24%  Similarity=0.306  Sum_probs=37.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccC-CCCCCCC--CCcCCcceEE--EEEEECC--eEEEEEeCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSN-VEGLPPD--RIVPTVGLNI--GRIEVSN--SKLVFWDLGG   77 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~-~~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~g   77 (128)
                      =.++|+++|.+|.|||||++.+...+-. .......  .+..|.....  ..++-++  .++++.||||
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG  113 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG  113 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence            4789999999999999999999772111 0011111  1112232221  2333344  5788999999

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.13  E-value=7e-06  Score=59.35  Aligned_cols=23  Identities=30%  Similarity=0.622  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..++.++|.+|+|||||+|+++.
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~  176 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLK  176 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999997

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.13  E-value=1.4e-05  Score=64.41  Aligned_cols=81  Identities=26%  Similarity=0.320  Sum_probs=53.2

Q ss_pred             CCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC----------------CeEEEEEeCCCCccchhhHHHhhhc
Q 033075           28 AGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----------------NSKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        28 ~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ++||||+..+..  ++.......-..-.+|.........                --.+.+|||||++.|..+....+..
T Consensus       472 ~~KTtLLD~iR~--t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~  549 (1049)
T PRK14845        472 VHNTTLLDKIRK--TRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSL  549 (1049)
T ss_pred             cccccHHHHHhC--CCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhccc
Confidence            359999999988  4332322333333344332222110                0138999999999998888888889


Q ss_pred             cCEEEEEEECCC---cccHHHH
Q 033075           92 AHAVVFVIDAAC---PSRFEDS  110 (128)
Q Consensus        92 ~~~~v~v~d~~~---~~s~~~~  110 (128)
                      +|++++|+|+++   +.+++.+
T Consensus       550 aDivlLVVDa~~Gi~~qT~e~I  571 (1049)
T PRK14845        550 ADLAVLVVDINEGFKPQTIEAI  571 (1049)
T ss_pred             CCEEEEEEECcccCCHhHHHHH
Confidence            999999999987   4444444

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=5.2e-06  Score=56.60  Aligned_cols=84  Identities=25%  Similarity=0.360  Sum_probs=53.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh---hHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~   93 (128)
                      +.+|+++|...+||||+.+....-+...+..+.   .+|....-..+.-.-.++.+||.||+-.+-.   .....++.+-
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlfl---ESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g  103 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFL---ESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG  103 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEe---eccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence            456999999999999999988772222111111   1111111111111116899999999876522   4456789999


Q ss_pred             EEEEEEECCC
Q 033075           94 AVVFVIDAAC  103 (128)
Q Consensus        94 ~~v~v~d~~~  103 (128)
                      ++++|+|.-+
T Consensus       104 ALifvIDaQd  113 (347)
T KOG3887|consen  104 ALIFVIDAQD  113 (347)
T ss_pred             eEEEEEechH
Confidence            9999999765

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=2.1e-05  Score=59.04  Aligned_cols=87  Identities=25%  Similarity=0.297  Sum_probs=62.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +..=+-++|.-.=|||||+..|.+  +........-..--+|.-...+. .|..+++.||||+..|..++.+-..-+|.+
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRk--s~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRK--SSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhh--CceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence            344567899999999999999988  33211111122222332223333 569999999999999999999888899999


Q ss_pred             EEEEECCCcc
Q 033075           96 VFVIDAACPS  105 (128)
Q Consensus        96 v~v~d~~~~~  105 (128)
                      ++|+.+.|.-
T Consensus       229 VLVVAadDGV  238 (683)
T KOG1145|consen  229 VLVVAADDGV  238 (683)
T ss_pred             EEEEEccCCc
Confidence            9999887743

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.10  E-value=1.5e-05  Score=54.39  Aligned_cols=21  Identities=43%  Similarity=0.586  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =++++|++|||||||++.+..
T Consensus        31 fvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999987

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.09  E-value=4.7e-06  Score=56.99  Aligned_cols=38  Identities=24%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             EEEEEeCCCCccchhhHHHhh--------hccCEEEEEEECCCccc
Q 033075           69 KLVFWDLGGQPGLRSIWEKYY--------EEAHAVVFVIDAACPSR  106 (128)
Q Consensus        69 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~v~v~d~~~~~s  106 (128)
                      .+.++|+|||-++-..+....        ...-++++++|.....+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~  137 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSD  137 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccC
Confidence            689999999987644333322        23557889999875444

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=2.5e-05  Score=55.83  Aligned_cols=97  Identities=21%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccC-CCCCCCCCCc--CCcceEEEEEEEC---------CeEEEEEeCCCCccch
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSN-VEGLPPDRIV--PTVGLNIGRIEVS---------NSKLVFWDLGGQPGLR   82 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~--~t~~~~~~~~~~~---------~~~~~~~D~~g~~~~~   82 (128)
                      +.++++.++|.-.+|||||.+++....+. .++..++...  .|.+.-...+.+.         ..++++.|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            56799999999999999999999874322 1122222211  1111111222221         1578999999997665


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccHHHHH
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSK  111 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~  111 (128)
                      .....-..-.|..++|+|+...-+-+.+.
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAE  113 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAE  113 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccch
Confidence            44444445567788888988655444443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.06  E-value=1.2e-05  Score=56.41  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.++++|++|+|||||+|.+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~  183 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLP  183 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999987

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.06  E-value=2.1e-05  Score=58.04  Aligned_cols=88  Identities=16%  Similarity=0.216  Sum_probs=64.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCC--CCCC------CCcCCcceE----EEEEEECCeEEEEEeCCCCccchhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPD------RIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRSI   84 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~--~~~~------~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~   84 (128)
                      .-+|+++..-.=|||||+..++.++.....  +..+      ....-.|+.    ...+.+++.++.+.||||+.+|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            347888888889999999999985443110  0000      111112322    2356778899999999999999999


Q ss_pred             HHHhhhccCEEEEEEECCCc
Q 033075           85 WEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ..+.+.=.|++++++|+.+.
T Consensus        85 VERvl~MVDgvlLlVDA~EG  104 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEG  104 (603)
T ss_pred             hhhhhhhcceEEEEEEcccC
Confidence            99999999999999999874

>PRK13796 GTPase YqeH; Provisional

Probab=98.03  E-value=1.8e-05  Score=57.40  Aligned_cols=24  Identities=25%  Similarity=0.559  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +..++.++|.+|||||||+|++..
T Consensus       159 ~~~~v~vvG~~NvGKSTLiN~L~~  182 (365)
T PRK13796        159 EGRDVYVVGVTNVGKSTLINRIIK  182 (365)
T ss_pred             CCCeEEEEcCCCCcHHHHHHHHHh
Confidence            345899999999999999999986

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.02  E-value=1e-05  Score=49.72  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -|++++|..|+|||||.+.+.+
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G   23 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYG   23 (148)
T ss_pred             ceeEEecccccCchhHHHHhhc
Confidence            4789999999999999999987

>PRK00098 GTPase RsgA; Reviewed

Probab=97.94  E-value=3.3e-05  Score=54.52  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...++++|.+|+|||||+|.+..
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~  186 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAP  186 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999987

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.88  E-value=7.7e-05  Score=54.48  Aligned_cols=73  Identities=23%  Similarity=0.375  Sum_probs=61.4

Q ss_pred             CcceEEEEEEE-CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc----------ccHHHHHHHHHHHhcCccc
Q 033075           55 TVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALGKFFGMRIC  123 (128)
Q Consensus        55 t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~l~~~~~~~~~  123 (128)
                      |.|+....+.+ .+..+.++|++|++.-+..|..++.++++++||+++++=          ..+.+....++.+++.+..
T Consensus       222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~  301 (389)
T PF00503_consen  222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF  301 (389)
T ss_dssp             -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence            67887778888 889999999999999999999999999999999998742          3477888889999988776


Q ss_pred             ccCC
Q 033075          124 KERH  127 (128)
Q Consensus       124 ~~~~  127 (128)
                      .+.|
T Consensus       302 ~~~~  305 (389)
T PF00503_consen  302 KNTP  305 (389)
T ss_dssp             TTSE
T ss_pred             ccCc
Confidence            6544

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK13768 GTPase; Provisional

Probab=97.88  E-value=7.2e-05  Score=51.62  Aligned_cols=39  Identities=36%  Similarity=0.350  Sum_probs=26.7

Q ss_pred             EEEEEeCCCCccc---hhhHHHhhh---c--cCEEEEEEECCCcccH
Q 033075           69 KLVFWDLGGQPGL---RSIWEKYYE---E--AHAVVFVIDAACPSRF  107 (128)
Q Consensus        69 ~~~~~D~~g~~~~---~~~~~~~~~---~--~~~~v~v~d~~~~~s~  107 (128)
                      .+.+||+||+.+.   +..+..+++   .  ++++++++|.+...+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~  144 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTP  144 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCH
Confidence            6899999997653   333333333   2  8899999999765443

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=2.6e-05  Score=58.63  Aligned_cols=91  Identities=21%  Similarity=0.232  Sum_probs=59.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccC--------------CCCCCCCCCcCC---------cce--EE--EEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN--------------VEGLPPDRIVPT---------VGL--NI--GRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~--------------~~~~~~~~~~~t---------~~~--~~--~~~~~~   66 (128)
                      .+..+.++++|.-.+|||||+-+++....+              ..++..-.+...         .|+  .+  ..++-+
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            446889999999999999999998763111              112222222221         111  12  233333


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ...+++.|.||+..|-.--..-...+|+.++|+|++..
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~  291 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG  291 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcc
Confidence            47899999999888765444455789999999998853

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.86  E-value=0.00023  Score=46.61  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++--.++++|++|+|||||++.+..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G   47 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAG   47 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHc
Confidence            3445789999999999999999987

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.85  E-value=0.00024  Score=53.80  Aligned_cols=82  Identities=24%  Similarity=0.365  Sum_probs=54.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCc------------------------------------------
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV------------------------------------------   53 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~------------------------------------------   53 (128)
                      ...+++++|+..+||||.+..+...  .++....++..                                          
T Consensus       307 hLPRVVVVGDQSaGKTSVLEmiAqA--RIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E  384 (980)
T KOG0447|consen  307 HLPRVVVVGDQSAGKTSVLEMIAQA--RIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE  384 (980)
T ss_pred             cCceEEEEcCccccchHHHHHHHHh--ccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence            3569999999999999999998762  11000000000                                          


Q ss_pred             ----------CCcceEEEEEEECC---eEEEEEeCCC-------------CccchhhHHHhhhccCEEEEEE
Q 033075           54 ----------PTVGLNIGRIEVSN---SKLVFWDLGG-------------QPGLRSIWEKYYEEAHAVVFVI   99 (128)
Q Consensus        54 ----------~t~~~~~~~~~~~~---~~~~~~D~~g-------------~~~~~~~~~~~~~~~~~~v~v~   99 (128)
                                .|+......++++|   .+..+.|+||             .+....+.+.|+.+.+++|+|+
T Consensus       385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCI  456 (980)
T KOG0447|consen  385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCI  456 (980)
T ss_pred             HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEe
Confidence                      02333334455555   6788999999             2334567788999999999998

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.85  E-value=1.8e-05  Score=48.16  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|++.|++||||||+++.+..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999988

...

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.84  E-value=1.5e-05  Score=57.81  Aligned_cols=89  Identities=17%  Similarity=0.224  Sum_probs=53.9

Q ss_pred             HHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccch-
Q 033075            7 GLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLR-   82 (128)
Q Consensus         7 ~~~~~~~-~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~-   82 (128)
                      +.|..+- .++.+.+.++|-|++||||++|.|..      .+.. ...|-.| ....+++-.  .++.++|+||.-.-. 
T Consensus       296 RQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~------KkVC-kvAPIpG-ETKVWQYItLmkrIfLIDcPGvVyps~  367 (572)
T KOG2423|consen  296 RQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRK------KKVC-KVAPIPG-ETKVWQYITLMKRIFLIDCPGVVYPSS  367 (572)
T ss_pred             HHHHhhccCccceeeeeecCCCCchHHHHHHHhh------cccc-cccCCCC-cchHHHHHHHHhceeEecCCCccCCCC
Confidence            3344433 57899999999999999999999987      2221 1111111 122222222  679999999954322 


Q ss_pred             -hhHHHhhhccCEEEEEEECCCccc
Q 033075           83 -SIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        83 -~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                       ......+   -++|-|=.+.+++.
T Consensus       368 dset~ivL---kGvVRVenv~~pe~  389 (572)
T KOG2423|consen  368 DSETDIVL---KGVVRVENVKNPED  389 (572)
T ss_pred             CchHHHHh---hceeeeeecCCHHH
Confidence             2223332   35667777777764

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.84  E-value=5.1e-05  Score=49.33  Aligned_cols=55  Identities=24%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+++.|++|+|||||++.+..           -..|+.|    .+.+.|..+.-   -+.+.|+.....+...
T Consensus        31 ~iaitGPSG~GKStllk~va~-----------Lisp~~G----~l~f~Ge~vs~---~~pea~Rq~VsY~~Q~   85 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVAS-----------LISPTSG----TLLFEGEDVST---LKPEAYRQQVSYCAQT   85 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHh-----------ccCCCCc----eEEEcCccccc---cChHHHHHHHHHHHcC
Confidence            579999999999999999987           5556665    55566655443   3345555554444333

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=0.00038  Score=50.38  Aligned_cols=100  Identities=18%  Similarity=0.232  Sum_probs=63.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC---cCCcc-eEEE--------------EEE----ECC------
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVG-LNIG--------------RIE----VSN------   67 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~---~~t~~-~~~~--------------~~~----~~~------   67 (128)
                      .+-.|+++|.-..||||+++-++.      ..++...   .||.+ +...              .++    +.+      
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle------~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~  130 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLE------QDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN  130 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHh------CCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence            356799999999999999999998      3333221   12222 1100              011    110      


Q ss_pred             ----------------eEEEEEeCCCC-----------ccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           68 ----------------SKLVFWDLGGQ-----------PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        68 ----------------~~~~~~D~~g~-----------~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                                      ..+++.|+||.           -.|......|...||.|+++||...-+-=.+-++.+..+..+
T Consensus       131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~  210 (532)
T KOG1954|consen  131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH  210 (532)
T ss_pred             HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence                            25889999992           134557788889999999999987654434444456665554


Q ss_pred             c
Q 033075          121 R  121 (128)
Q Consensus       121 ~  121 (128)
                      +
T Consensus       211 E  211 (532)
T KOG1954|consen  211 E  211 (532)
T ss_pred             c
Confidence            3

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.81  E-value=4.2e-05  Score=51.77  Aligned_cols=21  Identities=43%  Similarity=0.577  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999886

>PRK08118 topology modulation protein; Reviewed

Probab=97.81  E-value=2.1e-05  Score=50.97  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -||+++|++|||||||.+.+..
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999987

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.81  E-value=2.1e-05  Score=51.57  Aligned_cols=22  Identities=50%  Similarity=0.706  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .||+++|+|||||||+.+.+..
T Consensus         1 ~riiilG~pGaGK~T~A~~La~   22 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAK   22 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999988

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=5.2e-05  Score=58.85  Aligned_cols=86  Identities=22%  Similarity=0.282  Sum_probs=60.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE----------------ECCeEEEEEeCCCCc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQP   79 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~   79 (128)
                      +..=|+++|.-..|||-|+..+..  ++............+|.++-...                ++--.+.++|+||++
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~--tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRG--TNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhc--cccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            345689999999999999999887  33322222222233443322211                111247899999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCC
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                      .|..++.+....||.+|+|+|+..
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImh  575 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMH  575 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhc
Confidence            999999999999999999999986

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.80  E-value=5.3e-05  Score=50.90  Aligned_cols=22  Identities=41%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|||||||++.+..
T Consensus        29 evv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            3578999999999999999876

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.79  E-value=3.9e-05  Score=54.87  Aligned_cols=20  Identities=40%  Similarity=0.659  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++++|++||||||+++.+..
T Consensus        32 ~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999997

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.78  E-value=8.1e-05  Score=48.34  Aligned_cols=22  Identities=45%  Similarity=0.626  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ||++.|++|+||||+++++...
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999999873

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.76  E-value=4.9e-05  Score=53.38  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++|.+|+|||||+|++..
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p  186 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLP  186 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCc
Confidence            678999999999999999976

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.76  E-value=5e-05  Score=51.72  Aligned_cols=44  Identities=34%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG   76 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~   76 (128)
                      =++.++|.+|||||||++.+..           .+.||.|    .+.+.+.-..+++.+
T Consensus        54 e~vGiiG~NGaGKSTLlkliaG-----------i~~Pt~G----~v~v~G~v~~li~lg   97 (249)
T COG1134          54 ERVGIIGHNGAGKSTLLKLIAG-----------IYKPTSG----KVKVTGKVAPLIELG   97 (249)
T ss_pred             CEEEEECCCCCcHHHHHHHHhC-----------ccCCCCc----eEEEcceEehhhhcc
Confidence            3789999999999999999998           7777777    444555333344444

>PRK07261 topology modulation protein; Provisional

Probab=97.75  E-value=3e-05  Score=50.39  Aligned_cols=21  Identities=38%  Similarity=0.638  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +|+++|++|+|||||++.+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999876

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.72  E-value=7.9e-05  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G   51 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILG   51 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999997

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.72  E-value=7.2e-05  Score=49.79  Aligned_cols=21  Identities=43%  Similarity=0.615  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|+|||||+|.+..
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhc
Confidence            578999999999999999987

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.72  E-value=7.9e-05  Score=50.02  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~G   52 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGG   52 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhC
Confidence            344689999999999999999987

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.72  E-value=6e-05  Score=52.02  Aligned_cols=22  Identities=41%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --++++|++|||||||++.+..
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3468999999999999999987

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.71  E-value=6.4e-05  Score=54.05  Aligned_cols=20  Identities=45%  Similarity=0.624  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.++|++||||||+++.+..
T Consensus        34 ~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67999999999999999997

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.71  E-value=5e-05  Score=47.16  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.=.++++|++|+|||||++.+..
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g   33 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAG   33 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCEEEEEccCCCccccceeeecc
Confidence            344789999999999999999987

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.70  E-value=9.3e-05  Score=50.30  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G   48 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVG   48 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            334689999999999999999997

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.69  E-value=9.2e-05  Score=48.71  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G   40 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNG   40 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999987

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.69  E-value=0.0001  Score=49.11  Aligned_cols=24  Identities=33%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G   48 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAG   48 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344789999999999999999987

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.68  E-value=0.00011  Score=49.05  Aligned_cols=24  Identities=42%  Similarity=0.556  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +--.++++|++|+|||||++.+..
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G   49 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNG   49 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999987

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.68  E-value=0.00011  Score=49.27  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G   48 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAG   48 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999987

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.67  E-value=0.00012  Score=49.72  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G   53 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCING   53 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            444789999999999999999987

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.67  E-value=0.00011  Score=49.87  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~G   57 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGG   57 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999997

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.66  E-value=0.00012  Score=48.98  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G   49 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYK   49 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999987

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.65  E-value=0.00013  Score=49.02  Aligned_cols=24  Identities=38%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAG   53 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999987

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.65  E-value=0.00017  Score=53.56  Aligned_cols=102  Identities=15%  Similarity=0.110  Sum_probs=66.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCC-----CCCC------CCcCCcceEEEEEEEC--C---eEEEEEeCCCCccch
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-----LPPD------RIVPTVGLNIGRIEVS--N---SKLVFWDLGGQPGLR   82 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~-----~~~~------~~~~t~~~~~~~~~~~--~---~~~~~~D~~g~~~~~   82 (128)
                      ++.++..-.=|||||..|++....-...     +.-+      +.--|+-.+...+.+.  +   +.+++.||||+-+|.
T Consensus        11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs   90 (603)
T COG0481          11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   90 (603)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence            4566666778999999999874332110     0000      0011222222233332  1   789999999999998


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      -...+.+..|.+.++++|++..-.-+.+...+.-+-++
T Consensus        91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~  128 (603)
T COG0481          91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN  128 (603)
T ss_pred             EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcC
Confidence            88888889999999999999876666665555544433

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.65  E-value=9.4e-05  Score=55.95  Aligned_cols=25  Identities=40%  Similarity=0.432  Sum_probs=22.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++-=+++++|++|+|||||++.+..
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g  383 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTG  383 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4556899999999999999999997

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.65  E-value=0.00018  Score=46.91  Aligned_cols=24  Identities=38%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...-+.++|.+|+|||||++++..
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~   28 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHH
Confidence            344689999999999999999986

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.65  E-value=0.00012  Score=49.24  Aligned_cols=24  Identities=42%  Similarity=0.495  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G   48 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMG   48 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Confidence            344789999999999999999987

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.64  E-value=0.00014  Score=47.38  Aligned_cols=24  Identities=33%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +--.++++|++|+|||||++.+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G   48 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAG   48 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344678999999999999999987

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.64  E-value=0.00014  Score=48.74  Aligned_cols=24  Identities=38%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~G   50 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYG   50 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999987

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=97.64  E-value=8.9e-05  Score=55.27  Aligned_cols=86  Identities=15%  Similarity=0.167  Sum_probs=55.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc--h--h---hH-
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL--R--S---IW-   85 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~--~--~---~~-   85 (128)
                      ....-.++++|.|++||||+++.+...-.+    .....++|.+...+.+.++-.+.++.||||.-..  +  .   +. 
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradve----vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs  240 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE----VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI  240 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccc----cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence            345668899999999999999988772222    2234445666666677677789999999993221  1  1   11 


Q ss_pred             -HHhhhccCEEEEEEECCC
Q 033075           86 -EKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        86 -~~~~~~~~~~v~v~d~~~  103 (128)
                       ....+--.+++++.|++.
T Consensus       241 ITALAHLraaVLYfmDLSe  259 (620)
T KOG1490|consen  241 ITALAHLRSAVLYFMDLSE  259 (620)
T ss_pred             HHHHHHhhhhheeeeechh
Confidence             111223356777788774

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.64  E-value=0.00013  Score=49.82  Aligned_cols=23  Identities=39%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~G   50 (243)
T TIGR02315        28 GEFVAIIGPSGAGKSTLLRCINR   50 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999987

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.64  E-value=0.00015  Score=48.27  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G   46 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGL   46 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999997

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.64  E-value=0.00013  Score=49.18  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILG   53 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344789999999999999999997

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.63  E-value=0.00014  Score=48.95  Aligned_cols=24  Identities=38%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G   53 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGG   53 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            344688999999999999999987

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.63  E-value=9e-05  Score=50.38  Aligned_cols=23  Identities=43%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        30 GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          30 GEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhc
Confidence            33689999999999999999886

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.63  E-value=0.00011  Score=49.65  Aligned_cols=21  Identities=48%  Similarity=0.642  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|+||||+++.+..
T Consensus        31 iv~llG~NGaGKTTlLkti~G   51 (237)
T COG0410          31 IVALLGRNGAGKTTLLKTIMG   51 (237)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999997

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.63  E-value=5.2e-05  Score=47.36  Aligned_cols=20  Identities=30%  Similarity=0.579  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      |+++|++||||||+++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999984

...

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.63  E-value=9.5e-05  Score=50.98  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =++++|++||||||+++.+..
T Consensus        29 f~vliGpSGsGKTTtLkMINr   49 (309)
T COG1125          29 FLVLIGPSGSGKTTTLKMINR   49 (309)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            468999999999999998876

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.63  E-value=0.00014  Score=48.82  Aligned_cols=23  Identities=39%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTG   50 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            33689999999999999999997

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.62  E-value=0.00012  Score=48.31  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -+.++|++|+|||||++.+..
T Consensus        30 f~fl~GpSGAGKSTllkLi~~   50 (223)
T COG2884          30 FVFLTGPSGAGKSTLLKLIYG   50 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999987

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.62  E-value=0.00015  Score=49.14  Aligned_cols=24  Identities=33%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G   48 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVG   48 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999987

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.62  E-value=0.00014  Score=48.89  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --.++++|++|+|||||++.+..
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~G   52 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAG   52 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999987

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.62  E-value=7.4e-05  Score=40.42  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.++.|++|+|||||+..+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.62  E-value=0.00015  Score=48.85  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G   48 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTT   48 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999987

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.62  E-value=0.00015  Score=48.48  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINL   48 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999997

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.61  E-value=0.00015  Score=47.41  Aligned_cols=24  Identities=33%  Similarity=0.254  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.=.++++|++|+|||||++.+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G   48 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFG   48 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999987

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.61  E-value=0.00018  Score=47.71  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G   48 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAG   48 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            445789999999999999999987

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.60  E-value=0.00015  Score=48.61  Aligned_cols=23  Identities=43%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~i~G   59 (214)
T PRK13543         37 GEALLVQGDNGAGKTTLLRVLAG   59 (214)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhC
Confidence            33688999999999999999987

>PRK10908 cell division protein FtsE; Provisional

Probab=97.60  E-value=0.00017  Score=48.55  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G   50 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICG   50 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            444689999999999999999987

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.60  E-value=0.00016  Score=49.29  Aligned_cols=24  Identities=38%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G   49 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNG   49 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999987

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.60  E-value=0.00014  Score=48.51  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G   48 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILG   48 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            334688999999999999999997

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.60  E-value=0.00014  Score=48.05  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G   48 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAG   48 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            344789999999999999999997

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=97.60  E-value=3.6e-05  Score=52.31  Aligned_cols=26  Identities=27%  Similarity=0.709  Sum_probs=23.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++.+|++++|...+||||+++++.-
T Consensus        36 arrelkllllgtgesgkstfikqmri   61 (359)
T KOG0085|consen   36 ARRELKLLLLGTGESGKSTFIKQMRI   61 (359)
T ss_pred             hhhhheeeeecCCCcchhhHHHHHHh
Confidence            36789999999999999999998754

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.59  E-value=0.00016  Score=49.87  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G   49 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAG   49 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999997

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.59  E-value=0.00015  Score=48.18  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G   49 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAG   49 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            445789999999999999999987

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.58  E-value=0.00018  Score=48.92  Aligned_cols=24  Identities=38%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G   49 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTR   49 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344688999999999999999987

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.58  E-value=0.00016  Score=49.12  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G   48 (236)
T cd03219          26 GEIHGLIGPNGAGKTTLFNLISG   48 (236)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcC
Confidence            34689999999999999999987

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.58  E-value=0.00018  Score=48.08  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +--.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAG   48 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            334689999999999999999997

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.57  E-value=0.0002  Score=46.13  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G   48 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSG   48 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344788999999999999999987

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.57  E-value=0.00018  Score=49.08  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|+|||||++.+..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G   50 (239)
T cd03296          29 ELVALLGPSGSGKTTLLRLIAG   50 (239)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3588999999999999999987

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.57  E-value=0.00012  Score=57.12  Aligned_cols=25  Identities=36%  Similarity=0.420  Sum_probs=22.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++-=+++++|++|+|||||++.+..
T Consensus       477 ~~Ge~vaIvG~sGsGKSTLlklL~g  501 (686)
T TIGR03797       477 EPGEFVAIVGPSGSGKSTLLRLLLG  501 (686)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4556889999999999999999998

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.57  E-value=8.6e-05  Score=58.01  Aligned_cols=40  Identities=33%  Similarity=0.397  Sum_probs=30.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK   69 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   69 (128)
                      ++-=+|+++|.+|||||||++-+.+           -+.|+.|    .+.+++++
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~g-----------ly~p~~G----~I~~dg~d  536 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLG-----------LYKPQQG----RILLDGVD  536 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc-----------CCCCCCc----eEEECCEe
Confidence            3445799999999999999999998           5556555    45555543

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.57  E-value=0.00021  Score=47.58  Aligned_cols=23  Identities=43%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G   49 (204)
T PRK13538         27 GELVQIEGPNGAGKTSLLRILAG   49 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999987

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.57  E-value=0.001  Score=47.74  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.+.|.+.|++|+|||||+..+..
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~   78 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGM   78 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999999998765

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.57  E-value=0.00027  Score=50.77  Aligned_cols=89  Identities=18%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccC-----------CC------CCCCC------------CCcCCcceEEEEEE
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN-----------VE------GLPPD------------RIVPTVGLNIGRIE   64 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~-----------~~------~~~~~------------~~~~t~~~~~~~~~   64 (128)
                      ++..+|++-.|.-.-|||||+=+|+.-...           .+      +...+            ++--|+++-+..+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            467889999999999999999999762110           00      00000            01113333333333


Q ss_pred             ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECC
Q 033075           65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA  102 (128)
Q Consensus        65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~  102 (128)
                      -...++.+-|+||+++|...-..=...||+.|+++|..
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR  120 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR  120 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc
Confidence            33478999999999988654344447789999999864

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.56  E-value=0.00018  Score=48.66  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~G   58 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAG   58 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHc
Confidence            334789999999999999999997

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.56  E-value=0.00018  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G   48 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNR   48 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            344689999999999999999987

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.56  E-value=0.00019  Score=48.93  Aligned_cols=24  Identities=33%  Similarity=0.277  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G   51 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVG   51 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999997

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.56  E-value=9.8e-05  Score=49.64  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =-.+++|++|+|||||++.++.
T Consensus        28 ev~ailGPNGAGKSTlLk~LsG   49 (259)
T COG4559          28 EVLAILGPNGAGKSTLLKALSG   49 (259)
T ss_pred             cEEEEECCCCccHHHHHHHhhC
Confidence            3568999999999999999997

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.56  E-value=0.00021  Score=47.76  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~g   46 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAG   46 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            444689999999999999999987

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=0.0002  Score=48.88  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|+|||||++.+..
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G   51 (241)
T PRK14250         30 AIYTIVGPSGAGKSTLIKLINR   51 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999997

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.55  E-value=0.00016  Score=48.38  Aligned_cols=23  Identities=39%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +. .++++|++|+|||||++.+..
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~G   47 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILAT   47 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhC
Confidence            35 899999999999999999987

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00017  Score=52.64  Aligned_cols=81  Identities=16%  Similarity=0.207  Sum_probs=55.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 033075           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI   99 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~   99 (128)
                      +.++|.+||||||++.-+..           -+.|..|    .+-++|..   .|-...++|+++....+.+-+.+=-.+
T Consensus       352 vFliG~NGsGKST~~~LLtG-----------L~~PqsG----~I~ldg~p---V~~e~ledYR~LfSavFsDyhLF~~ll  413 (546)
T COG4615         352 VFLIGGNGSGKSTLAMLLTG-----------LYQPQSG----EILLDGKP---VSAEQLEDYRKLFSAVFSDYHLFDQLL  413 (546)
T ss_pred             EEEECCCCCcHHHHHHHHhc-----------ccCCCCC----ceeECCcc---CCCCCHHHHHHHHHHHhhhHhhhHhhh
Confidence            57889999999999999987           5555555    44455533   233345678887777776665554444


Q ss_pred             ECCCcccHHHHHHHHHHHh
Q 033075          100 DAACPSRFEDSKTALGKFF  118 (128)
Q Consensus       100 d~~~~~s~~~~~~~l~~~~  118 (128)
                      ......+.+.+..|++.+.
T Consensus       414 ~~e~~as~q~i~~~LqrLe  432 (546)
T COG4615         414 GPEGKASPQLIEKWLQRLE  432 (546)
T ss_pred             CCccCCChHHHHHHHHHHH
Confidence            4455567888888888763

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.55  E-value=0.00019  Score=47.30  Aligned_cols=23  Identities=43%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .=.++++|++|+|||||+|-+..
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHh
Confidence            44789999999999999999987

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.55  E-value=0.00019  Score=50.67  Aligned_cols=24  Identities=33%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~G   41 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTT   41 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            334678999999999999999997

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.55  E-value=0.00019  Score=48.54  Aligned_cols=25  Identities=36%  Similarity=0.413  Sum_probs=21.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+-=.++++|++|+|||||++.+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (230)
T TIGR03410        24 PKGEVTCVLGRNGVGKTTLLKTLMG   48 (230)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3455789999999999999999987

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.54  E-value=0.00019  Score=49.89  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G   49 (271)
T PRK13638         27 SPVTGLVGANGCGKSTLFMNLSG   49 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            34689999999999999999987

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.54  E-value=0.00024  Score=46.45  Aligned_cols=24  Identities=46%  Similarity=0.491  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +--.++++|++|+|||||++.+..
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G   47 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAG   47 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            444789999999999999999987

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=97.54  E-value=0.00017  Score=50.84  Aligned_cols=21  Identities=48%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        33 i~gllG~NGAGKTTllk~l~g   53 (293)
T COG1131          33 IFGLLGPNGAGKTTLLKILAG   53 (293)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999998

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.54  E-value=0.0012  Score=41.58  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G   48 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAG   48 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            34678999999999999999987

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK06217 hypothetical protein; Validated

Probab=97.54  E-value=9.5e-05  Score=48.46  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+|+|+|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~   23 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAE   23 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999987

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.54  E-value=0.0002  Score=49.87  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~l~G   55 (272)
T PRK15056         33 GSIAALVGVNGSGKSTLFKALMG   55 (272)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999987

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.53  E-value=0.00028  Score=45.81  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G   50 (173)
T cd03246          28 GESLAIIGPSGSGKSTLARLILG   50 (173)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            33689999999999999999987

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.0001  Score=54.08  Aligned_cols=92  Identities=20%  Similarity=0.168  Sum_probs=65.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCCCC--------cCCcceE----EEEEEECCeEEEEEeCCCCccc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPDRI--------VPTVGLN----IGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~~~--------~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      +.-+|.++..-.+||||...+++....-+.  +...+-.        ..-.|+.    ...+++++.++.+.|+||+-+|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            344788888899999999999987322110  1000000        0112222    2356778899999999999999


Q ss_pred             hhhHHHhhhccCEEEEEEECCCcccH
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~~s~  107 (128)
                      +-...++++-.|+++.|+|.+..-.-
T Consensus       116 ~leverclrvldgavav~dasagve~  141 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEA  141 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCccc
Confidence            99999999999999999999865433

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.53  E-value=0.00014  Score=55.56  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++.=+++++|++|+|||||++.+..
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~g  391 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTR  391 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3455789999999999999999998

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.53  E-value=0.00022  Score=48.41  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~G   33 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISG   33 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            334689999999999999999987

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.53  E-value=0.00027  Score=45.90  Aligned_cols=24  Identities=33%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G   48 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILG   48 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999987

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.53  E-value=6.4e-05  Score=48.27  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ||+++|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999873

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.53  E-value=0.00019  Score=48.01  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G   47 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILG   47 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            344689999999999999999987

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.52  E-value=0.00024  Score=48.50  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G   50 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNL   50 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            334689999999999999999987

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=97.52  E-value=0.00023  Score=49.31  Aligned_cols=24  Identities=33%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~G   59 (265)
T TIGR02769        36 EGETVGLLGRSGCGKSTLARLLLG   59 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344789999999999999999987

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=97.52  E-value=0.00022  Score=49.45  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        38 ~Ge~~~i~G~NGsGKSTLl~~l~G   61 (267)
T PRK15112         38 EGQTLAIIGENGSGKSTLAKMLAG   61 (267)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhC
Confidence            344789999999999999999987

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.52  E-value=0.00012  Score=40.42  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++.|++|+||||+.+.+..
T Consensus         2 i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999997

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.52  E-value=0.00022  Score=50.02  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~L~G   55 (286)
T PRK13646         32 QGKYYAIVGQTGSGKSTLIQNINA   55 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999997

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.52  E-value=0.00024  Score=48.53  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|+|||||++.+..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G   49 (242)
T cd03295          28 EFLVLIGPSGSGKTTTMKMINR   49 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3578999999999999999987

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=97.52  E-value=0.00023  Score=49.45  Aligned_cols=23  Identities=35%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G   55 (269)
T PRK11831         33 GKITAIMGPSGIGKTTLLRLIGG   55 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            33689999999999999999997

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=97.52  E-value=0.00026  Score=47.43  Aligned_cols=22  Identities=36%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|+|||||++.+..
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G   45 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAG   45 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999999987

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.51  E-value=2.7e-05  Score=52.94  Aligned_cols=21  Identities=38%  Similarity=0.521  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++||+|+||||++|.+..
T Consensus        32 i~~LIGPNGAGKTTlfNlitG   52 (250)
T COG0411          32 IVGLIGPNGAGKTTLFNLITG   52 (250)
T ss_pred             EEEEECCCCCCceeeeeeecc
Confidence            578999999999999999987

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.51  E-value=0.0003  Score=49.11  Aligned_cols=60  Identities=30%  Similarity=0.453  Sum_probs=40.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC----eEEEEEeCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN----SKLVFWDLGG   77 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~D~~g   77 (128)
                      =.++|+.+|..|.|||||+..+.+  .+.......-..|++.....+.++..    ..+++.|+.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFN--t~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFN--TKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhc--cccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            378999999999999999999998  33222222233344444333333332    5788999998

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.51  E-value=0.00026  Score=48.52  Aligned_cols=23  Identities=39%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK11264         29 GEVVAIIGPSGSGKTTLLRCINL   51 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            33689999999999999999987

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.51  E-value=0.00011  Score=50.51  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --++++|++|+|||||++.++.
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3578999999999999999998

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.51  E-value=0.00022  Score=47.57  Aligned_cols=24  Identities=29%  Similarity=0.234  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +--.++++|++|+|||||++.+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G   48 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILG   48 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            344678999999999999999987

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.51  E-value=0.0014  Score=45.65  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=24.0

Q ss_pred             HhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         9 ~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +..+.....--+++.|++|+||||+++.++.
T Consensus        72 l~~~~~~~~GlilisG~tGSGKTT~l~all~  102 (264)
T cd01129          72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALS  102 (264)
T ss_pred             HHHHHhcCCCEEEEECCCCCcHHHHHHHHHh
Confidence            3333444455689999999999999999876

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.51  E-value=0.00022  Score=48.99  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +--.++++|++|+|||||++.+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G   53 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTG   53 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999997

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.50  E-value=0.00024  Score=49.58  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~i~G   55 (280)
T PRK13649         33 GSYTAFIGHTGSGKSTIMQLLNG   55 (280)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            33679999999999999999987

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.50  E-value=0.00026  Score=46.16  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +--.++++|++|+|||||++.+..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G   50 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTG   50 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            334689999999999999999987

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.50  E-value=0.00026  Score=48.28  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G   49 (240)
T PRK09493         27 GEVVVIIGPSGSGKSTLLRCINK   49 (240)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            33688999999999999999997

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.50  E-value=0.00026  Score=48.02  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G   50 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPR   50 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            334689999999999999999987

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.49  E-value=0.00025  Score=50.14  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~G   52 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLG   52 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            344789999999999999999987

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=97.49  E-value=0.00025  Score=49.30  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|+|||||++.+..
T Consensus        51 e~~~l~G~nGsGKSTLl~~L~G   72 (269)
T cd03294          51 EIFVIMGLSGSGKSTLLRCINR   72 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999987

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.49  E-value=0.00026  Score=49.65  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|+|||||++.+..
T Consensus        38 e~~~l~G~nGsGKSTLl~~l~G   59 (289)
T PRK13645         38 KVTCVIGTTGSGKSTMIQLTNG   59 (289)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999987

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.49  E-value=0.0003  Score=46.73  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+--.++++|++|+|||||++.+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (201)
T cd03231          24 AAGEALQVTGPNGSGKTTLLRILAG   48 (201)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3455789999999999999999987

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.49  E-value=0.00016  Score=55.45  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=22.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++.=+++++|++|+|||||++.+..
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~g  389 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMG  389 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4556889999999999999999998

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.49  E-value=0.00026  Score=49.65  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|+|||||++.+..
T Consensus        34 e~~~iiG~NGaGKSTLl~~l~G   55 (287)
T PRK13641         34 SFVALVGHTGSGKSTLMQHFNA   55 (287)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3688999999999999999997

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.49  E-value=0.00012  Score=57.32  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++-=+++++|++|+|||||++.+..
T Consensus       503 ~~Ge~vaIvG~sGsGKSTLlklL~g  527 (710)
T TIGR03796       503 QPGQRVALVGGSGSGKSTIAKLVAG  527 (710)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3455899999999999999999998

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.48  E-value=0.00029  Score=48.42  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G   48 (252)
T TIGR03005        26 GEKVALIGPSGSGKSTILRILMT   48 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999987

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.47  E-value=0.00027  Score=49.06  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.=.++++|++|+|||||++.+..
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~G   57 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIG   57 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344779999999999999999987

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.47  E-value=0.00027  Score=47.16  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G   50 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAG   50 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            444789999999999999999997

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.47  E-value=0.00027  Score=49.61  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        33 Ge~~~i~G~nGaGKSTLl~~l~G   55 (287)
T PRK13637         33 GEFVGLIGHTGSGKSTLIQHLNG   55 (287)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            33689999999999999999987

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.47  E-value=0.00027  Score=49.01  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~G   59 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGR   59 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            344689999999999999999987

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.47  E-value=0.00032  Score=47.46  Aligned_cols=23  Identities=39%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G   55 (225)
T PRK10247         33 GEFKLITGPSGCGKSTLLKIVAS   55 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            33689999999999999999987

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=97.47  E-value=0.00029  Score=47.86  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G   49 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFR   49 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344779999999999999999997

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.47  E-value=0.00028  Score=49.24  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        30 Ge~~~i~G~NGsGKSTLl~~l~G   52 (277)
T PRK13652         30 NSRIAVIGPNGAGKSTLFRHFNG   52 (277)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34679999999999999999997

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=97.47  E-value=0.00026  Score=48.80  Aligned_cols=24  Identities=38%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~G   54 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSA   54 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344789999999999999999997

>PRK03839 putative kinase; Provisional

Probab=97.46  E-value=0.00013  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +|+++|.+||||||+.+.+...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999773

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=97.46  E-value=0.00027  Score=50.13  Aligned_cols=21  Identities=43%  Similarity=0.438  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus        35 i~gllGpNGaGKSTLl~~l~G   55 (306)
T PRK13537         35 CFGLLGPNGAGKTTTLRMLLG   55 (306)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999997

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=97.46  E-value=0.0003  Score=48.01  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~G   50 (242)
T TIGR03411        28 GELRVIIGPNGAGKTTMMDVITG   50 (242)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            34679999999999999999997

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.46  E-value=0.00021  Score=54.75  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++--+++++|++|+|||||++.+..
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g  398 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLG  398 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4556889999999999999999987

>TIGR00235 udk uridine kinase

Probab=97.46  E-value=0.00016  Score=48.31  Aligned_cols=27  Identities=26%  Similarity=0.211  Sum_probs=23.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +++..-++++|++|||||||++.+...
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            456677899999999999999999763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00018  Score=48.75  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=25.8

Q ss_pred             EEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC
Q 033075           21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN   67 (128)
Q Consensus        21 ~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~   67 (128)
                      +++||+|||||||.+.+..         .+.|..|.|    .+.+++
T Consensus        34 aiMGPNGsGKSTLa~~i~G---------~p~Y~Vt~G----~I~~~G   67 (251)
T COG0396          34 AIMGPNGSGKSTLAYTIMG---------HPKYEVTEG----EILFDG   67 (251)
T ss_pred             EEECCCCCCHHHHHHHHhC---------CCCceEecc----eEEECC
Confidence            7899999999999999997         125555555    455555

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.45  E-value=0.00013  Score=47.51  Aligned_cols=21  Identities=33%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++||||||+++.+..
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~   23 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARA   23 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.45  E-value=0.00013  Score=47.90  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++|+|++|+|||||++.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~   24 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQ   24 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999976

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.00097  Score=45.58  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.+.++|++|+|||||.+.+..
T Consensus        33 Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          33 GETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhc
Confidence            33678999999999999999987

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=97.45  E-value=0.00031  Score=47.67  Aligned_cols=24  Identities=42%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G   47 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAG   47 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344688999999999999999987

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.00039  Score=46.84  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++-=.+++||+|+|||||++.+-.
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHh
Confidence            3444568999999999999998865

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=97.45  E-value=0.00034  Score=47.17  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G   48 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITG   48 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            344678999999999999999987

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.45  E-value=0.0003  Score=47.84  Aligned_cols=23  Identities=43%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T PRK11614         31 GEIVTLIGANGAGKTTLLGTLCG   53 (237)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcC
Confidence            33688999999999999999987

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.45  E-value=0.00028  Score=49.37  Aligned_cols=21  Identities=38%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus        35 ~~~i~G~nGaGKSTLl~~i~G   55 (279)
T PRK13635         35 WVAIVGHNGSGKSTLAKLLNG   55 (279)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            579999999999999999987

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=97.45  E-value=0.00034  Score=48.20  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G   49 (256)
T TIGR03873        26 PGSLTGLLGPNGSGKSTLLRLLAG   49 (256)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcC
Confidence            344678999999999999999987

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14530 adenylate kinase; Provisional

Probab=97.45  E-value=0.00014  Score=48.87  Aligned_cols=23  Identities=35%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+|+++|++||||||+.+.+...
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999763

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.45  E-value=0.00014  Score=47.55  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=21.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++--.++++|++|+|||||++.+..
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4556889999999999999998864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.45  E-value=0.00011  Score=54.80  Aligned_cols=41  Identities=32%  Similarity=0.498  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEe
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD   74 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D   74 (128)
                      -+.++|++++|||||.+.+..           ...|+.|    .+.+++..+.-||
T Consensus       364 ~lgIIGPSgSGKSTLaR~lvG-----------~w~p~~G----~VRLDga~l~qWd  404 (580)
T COG4618         364 ALGIIGPSGSGKSTLARLLVG-----------IWPPTSG----SVRLDGADLRQWD  404 (580)
T ss_pred             eEEEECCCCccHHHHHHHHHc-----------ccccCCC----cEEecchhhhcCC
Confidence            468999999999999999998           5556655    4555555555555

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.44  E-value=0.00023  Score=55.70  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++-=+++++|++|+|||||++.+..
T Consensus       498 ~~G~~vaIvG~SGsGKSTLlklL~g  522 (708)
T TIGR01193       498 KMNSKTTIVGMSGSGKSTLAKLLVG  522 (708)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3445889999999999999999998

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.44  E-value=0.00014  Score=44.38  Aligned_cols=21  Identities=38%  Similarity=0.495  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999874

...

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=97.44  E-value=0.00027  Score=50.82  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        67 Gei~gLlGpNGaGKSTLl~~L~G   89 (340)
T PRK13536         67 GECFGLLGPNGAGKSTIARMILG   89 (340)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            34678999999999999999997

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=97.44  E-value=0.00036  Score=46.76  Aligned_cols=24  Identities=38%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G   46 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAG   46 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            444689999999999999999997

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.44  E-value=0.00032  Score=48.77  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~G   57 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTG   57 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            334678999999999999999987

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=97.44  E-value=0.00035  Score=47.26  Aligned_cols=24  Identities=33%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.=.++++|++|+|||||++.+..
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G   70 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAG   70 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999997

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.44  E-value=0.00029  Score=48.70  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        38 Ge~~~I~G~NGsGKSTLlk~l~G   60 (257)
T PRK11247         38 GQFVAVVGRSGCGKSTLLRLLAG   60 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999997

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.44  E-value=0.00037  Score=45.14  Aligned_cols=24  Identities=38%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +--.++++|++|+|||||++.+..
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G   50 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLR   50 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHc
Confidence            444789999999999999999987

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=97.44  E-value=0.0003  Score=50.62  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        31 Gei~~iiG~nGsGKSTLlk~L~G   53 (343)
T PRK11153         31 GEIFGVIGASGAGKSTLIRCINL   53 (343)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            34679999999999999999987

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.44  E-value=0.00016  Score=48.56  Aligned_cols=24  Identities=38%  Similarity=0.331  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.=.++++|++|+|||||++.+..
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~G   35 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCG   35 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344688999999999999999987

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.44  E-value=0.00015  Score=44.37  Aligned_cols=20  Identities=40%  Similarity=0.537  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      |++.|++|+|||++++.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHh
Confidence            68999999999999999998

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.44  E-value=0.00016  Score=44.14  Aligned_cols=22  Identities=41%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.++++|++|+|||++++.+..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~   24 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAR   24 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            4689999999999999999987

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.43  E-value=0.00031  Score=48.99  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (274)
T PRK13644         28 GEYIGIIGKNGSGKSTLALHLNG   50 (274)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34789999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		2e-16
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		4e-16
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		4e-16
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		4e-16
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-16
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		5e-16
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		5e-16
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-15
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-15
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		3e-15
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		4e-15
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-15
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		5e-15
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-15
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		5e-15
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-15
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		7e-15
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		7e-15
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		8e-15
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		8e-15
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		9e-15
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-14
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-14
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		1e-14
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		2e-14
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-14
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-14
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		3e-14
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-14
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-14
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-14
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-14
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		4e-14
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		5e-14
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		7e-14
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		9e-14
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-13
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		1e-13
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		5e-13
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-13
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-13
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		6e-13
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		7e-13
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		7e-13
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		1e-12
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		6e-12
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		7e-12
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		1e-11
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		8e-09
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		5e-08
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		5e-08
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		8e-08
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		1e-07
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		8e-07
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-06
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-06
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-06
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-06
4fmc_B	171	Espg-Rab1 Complex Length = 171		6e-05
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		7e-05
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		7e-05
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		7e-05
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		7e-05
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		9e-05
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		9e-05
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-04
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-04
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-04
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-04
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-04
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-04
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-04
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-04
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-04
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-04
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-04
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		8e-04
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		8e-04

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
           M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + +          +PT+G 
Sbjct: 1   MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGF 51
Query: 59  NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L +  
Sbjct: 52  NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 111
Query: 119 G 119
Sbjct: 112 A 112

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+G
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 70
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GQ  LRS W  Y+E    +++V+D+A   R +D +  L    
Sbjct: 71  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 112

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+G
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 70
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GQ  LRS W  Y+E    +++V+D+A   R +D +  L    
Sbjct: 71  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 112

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
           IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K  
Sbjct: 8   IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 60
Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
            WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +    R  ++
Sbjct: 61  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
           IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K  
Sbjct: 7   IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 59
Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
            WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +    R  ++
Sbjct: 60  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+G
Sbjct: 16  ELRLLMLGLDNAGKTTILKKFN-------GEDIDTISPTLGFNIKTLEHRGFKLNIWDVG 68
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           GQ  LRS W  Y+E    +++V+D+A   R +D +  L    
Sbjct: 69  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 110

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 3   SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNI 60
           ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + +          +PT+G N+
Sbjct: 2   NIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNV 52
Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
             +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L +   
Sbjct: 53  ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 111

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
            +  E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNV 370
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121
           WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +    R
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR 419

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F   E  +L++G+D AGKTT+L KLK   V +          +PT+G N+  ++ 
Sbjct: 8   LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVIT---------TIPTIGFNVETVQY 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
            N     WD+GGQ  +RS+W  YY     V+FVID+   SR  +++  + +  
Sbjct: 59  KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRML 111

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F K +  +L++G+D AGKTT+L K+K   V + +         PT+G N+  +E 
Sbjct: 8   LFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTI---------PTIGFNVETVEF 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
            N     WD+GGQ  +R +W  YY     ++FV+D+    R +D++  L +       K+
Sbjct: 59  RNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKD 118

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
           IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K  
Sbjct: 8   IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 60
Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
            WD+GG   +R +W  YY     ++FV+D A   R ++++  L +    R  ++
Sbjct: 61  VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 10  KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
           K +F K E  + ++G+  +GKTT +  + S   N      + ++PTVG N+ +I   N  
Sbjct: 24  KALFWKEEMELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVT 77
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           +  WD+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L
Sbjct: 78  IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNEL 122

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
           LF  +W+ +F   E  V+I+G+D AGKTT+L +    +S  E +      PT+G N+  I
Sbjct: 4   LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEI 55
Query: 64  EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
            ++N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++  L K   
Sbjct: 56  VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 111

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
           LF  +W+ +F   E  V+I+G+D AGKTT+L +    +S  E +      PT+G N+  I
Sbjct: 4   LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEI 55
Query: 64  EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
            ++N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++  L K   
Sbjct: 56  VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 111

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  IF K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E 
Sbjct: 20  LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEY 70
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
            N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++S   L K  
Sbjct: 71  KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKML 123

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F   E  +L++G+D AGKTT+L KLK   V +          +PT+G N+  ++ 
Sbjct: 8   LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVIT---------TIPTIGFNVETVQY 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
            N     WD+GGQ  +RS+W  YY     V+FV+D+   SR  +++  + +  
Sbjct: 59  KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRML 111

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E HVL LG+D +GKTT++ KLK   SN +      I+PT+G +I + + S+     +D+ 
Sbjct: 21  EVHVLCLGLDNSGKTTIINKLKP--SNAQS---QNILPTIGFSIEKFKSSSLSFTVFDMS 75
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
           GQ   R++WE YY+E  A++FVID++   R   +K  L         K R  
Sbjct: 76  GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI 127

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
           +E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+
Sbjct: 3   SEVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
           GGQ  +R  W  Y+E    +++VID+A   RFE++
Sbjct: 56  GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGR 62
           F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  
Sbjct: 8   FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVET 58
Query: 63  IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
           +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L +   
Sbjct: 59  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 115

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+G
Sbjct: 17  EVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDIG 69
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
           GQ  +R  W  Y+E    +++VID+A   RFE++
Sbjct: 70  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 103

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+G
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDIG 68
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
           GQ  +R  W  Y+E    +++VID+A   RFE++
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 102

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
             +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GG
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGG 53
Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
           Q  +R +W  YY     ++FV+D A   R ++++  L +    R  ++
Sbjct: 54  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
             +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GG
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGG 53
Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
           Q  +R +W  YY     ++FV+D A   R ++++  L +    R  ++
Sbjct: 54  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
           +  K E  +L++G+D AGKT++L KLK   + + +         PT+G N+  +E  N  
Sbjct: 12  LLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTI---------PTIGFNVETVEYKNIS 62
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
              WD+GGQ  +R +W  YY+   A++FV+D+    R  +++  L K  
Sbjct: 63  FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKML 111

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
             +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+GG
Sbjct: 2   LRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGG 54
Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
              LRS W  Y+E    +++V+D+A   R +D +  L    
Sbjct: 55  LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 95

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
           +K E  + ++G+  +GKTT +  + S   N      + ++PTVG N+ +I   N  +  W
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVTIKLW 72
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           D+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L    
Sbjct: 73  DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL 117

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F   E  +L++G+D AGKTT+L KLK   V + +         PT+G N+  ++ 
Sbjct: 8   LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVECVQY 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
            N     WD+GGQ  +RS+W  YY     V+FV+D+   SR  +++  + +  
Sbjct: 59  CNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRML 111

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
           +F K E  +L++G+D AGKTT+L KLK   + +          +PT+G N+  +E  N  
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNVETVEYKNIS 210
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
              WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L +   
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 260

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+G
Sbjct: 3   EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVG 55
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
           G   +R +W  YY     ++FV+D A   R ++++  L +    R  ++
Sbjct: 56  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 104

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+G
Sbjct: 2   EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVG 54
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
           G   +R +W  YY     ++FV+D A   R ++++  L +    R  ++
Sbjct: 55  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 103

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            +L LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGGQ 54
Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121
             +R +W  YY     ++FV+D A   R ++++  L +    R
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR 97

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
           +K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ ++   N  +  W
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIW 72
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
           D+GGQP  RS+WE+Y    +A+V++IDAA   + E S+  L    
Sbjct: 73  DIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLL 117

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E 
Sbjct: 8   LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEY 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
            N     WD+GGQ  +R +W+ Y++    ++FV+D+    R ++    L K  
Sbjct: 59  KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML 111

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 3   SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNI 60
           S+F  LW    +  E  +LILG+D AGKTT+L +L+   V +           PT+G N+
Sbjct: 7   SMFDKLWG---SNKELRILILGLDGAGKTTILYRLQIGEVVTTK---------PTIGFNV 54
Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
             +   N KL  WDLGGQ  +R  W  YY +  AV+FV+D+    R   +   L
Sbjct: 55  ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKEL 108

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
           +E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+
Sbjct: 3   SEVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
           GG   +R  W  Y+E    +++VID+A   RFE++
Sbjct: 56  GGLRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKL---KSVYSNVEGLPPDRIVPTVGLNI 60
           +F  LW  +F   E  V+I+G+D AGKTT+L +    + V+++          PT+G N+
Sbjct: 4   IFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS----------PTIGSNV 52
Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
             I V N+  + WD+GGQ  LRS W  YY     ++ V+D+    R   +K  L +   
Sbjct: 53  EEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLA 111

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
             +L++G+D AGKTT+L KLK   V + +         PT+G N+  ++  N     WD+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVETVQYKNISFTVWDV 51
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
           GGQ  +RS+W  YY     V+FV+D+   SR  +++  + +   
Sbjct: 52  GGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLN 95

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 17  EFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           E  +LILG+D AGKTT+L +L+   V + +         PT+G N+  +   N K   WD
Sbjct: 2   EMRILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWD 52
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           LGGQ  +R  W  YY    AV++V+D+    R   SK+ L
Sbjct: 53  LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 92

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 26  DKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW 85
           D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+GGQ  LRS W
Sbjct: 27  DNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 79
Query: 86  EKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
             Y+E    +++V+D+A   R +D +  L    
Sbjct: 80  RNYFESTDGLIWVVDSADRQRXQDCQRELQSLL 112

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  V+I+G+D AGKTT+L +    +S  E +      PT+G N+  I ++N++ + WD+G
Sbjct: 21  EHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEIVINNTRFLMWDIG 73
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
           GQ  LRS W  YY     V+ V+D+    R   ++  L K   
Sbjct: 74  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 116

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  V+I+G+D AGKTT+L +    +S  E +      PT+G N+  I ++N++ + WD+G
Sbjct: 22  EHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEIVINNTRFLMWDIG 74
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
           GQ  LRS W  YY     V+ V+D+    R   ++  L K   
Sbjct: 75  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 117

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLG 76
           +L LG+D AGKTTLL  LK+          DR+    PT       + + N K   +DLG
Sbjct: 4   LLFLGLDNAGKTTLLHMLKN----------DRLATLQPTWHPTSEELAIGNIKFTTFDLG 53
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
           G    R +W+ Y+ E + +VF++DAA P RF++++  L   F +   K+  F
Sbjct: 54  GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 105

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
             +L++G+D AGKTT+L KLK   + +          +PT+G N+  +E  N     WD+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNVETVEYKNISFTVWDV 51
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
           GGQ  +R +W  Y++    ++FV+D+    R  +++  L +   
Sbjct: 52  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 95

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLG 76
           +L LG+D AGKTTLL  LK+          DR+    PT       + + N K   +DLG
Sbjct: 26  LLFLGLDNAGKTTLLHMLKN----------DRLATLQPTWHPTSEELAIGNIKFTTFDLG 75
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
           G    R +W+ Y+ E + +VF++DAA P RF++++  L   F +   K+  F
Sbjct: 76  GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 127

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Query: 17  EFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           E  +LILG+D AGKTT+L +L+   V + +         PT+G N+  +   N K   WD
Sbjct: 4   EMRILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWD 54
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           LGG   +R  W  YY    AV++V+D+    R   SK+ L
Sbjct: 55  LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 94

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +LILG+D AGKTT+L +L+ V   V        +PT+G N+  +   N K   WDLG
Sbjct: 7   EXRILILGLDGAGKTTILYRLQ-VGEVVT------TIPTIGFNVETVTYKNLKFQVWDLG 59
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
           G   +R  W  YY    AV++V+D+    R   SK+
Sbjct: 60  GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
             +L++G+D AGKTT+L KLK   + +          +PT+G N+  +E  N     WD+
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNVETVEYKNISFTVWDV 53
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
           GG   +R +W  Y++    ++FV+D+    R  +++  L +   
Sbjct: 54  GGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 97

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
           +KT+  V++ G+D +GKTT++ ++K   S+ +      I  TVG N+   E        +
Sbjct: 14  SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-----HITATVGYNVETFEKGRVAFTVF 68
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAA 102
           D+GG    R +WE YY+   AV+FV+D++
Sbjct: 69  DMGGAKKFRGLWETYYDNIDAVIFVVDSS 97

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
           F GL+K         ++ LG+D AGKTTLL  LK           DR+   VPT+     
Sbjct: 28  FLGLYK-----KSGKLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 72
Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
            + ++      +DLGG    R +W+ Y    + +VF++D A  SR  +SK  L    
Sbjct: 73  ELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALM 129

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
           F GL+K    KT   ++ LG+D AGKTTLL  LK           DR+   VPT+     
Sbjct: 15  FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 59
Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
            + ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L
Sbjct: 60  ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEEL 112

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
           F GL+K    KT   ++ LG+D AGKTTLL  LK           DR+   VPT+     
Sbjct: 18  FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 62
Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
            + ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L
Sbjct: 63  ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEEL 115

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +  VL+LG+D AGKT++L +L               VPTVG+N+  ++  N     WDLG
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLG-------DVVTTVPTVGVNLETLQYKNISFEVWDLG 74
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           GQ G+R  W  Y+ +  AV++V+D+    R   +K  L
Sbjct: 75  GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHEL 112

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
           F GL+K    KT   ++ LG+D AGKTTLL  LK           DR+   VPT+     
Sbjct: 9   FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 53
Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
            + ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L
Sbjct: 54  ELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEEL 106

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
           F ++++G    GKT L+ +        +GL P     T+G++  I  +E++  K  L  W
Sbjct: 27  FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
           D  GQ   RSI + YY  A+A++   D  C   F
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESF 114

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
           F ++++G    GKT L       Y    G  PDR   T+G++       I+    K+  W
Sbjct: 30  FKIIVIGDSNVGKTCL------TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 83
Query: 74  DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFE 108
           D  GQ   R S+ + YY   HAVVFV D    + F 
Sbjct: 84  DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFH 119

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
           F ++++G    GKT L       Y    G  PDR   T+G++       I+    K+  W
Sbjct: 21  FKIIVIGDSNVGKTCL------TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74
Query: 74  DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFE 108
           D  GQ   R S+ + YY   HAVVFV D    + F 
Sbjct: 75  DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFH 110

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN----IGRIEVSNS 68
           F    F V+++G    GKT LL + K              + TVG++    +  ++    
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKD-----GAFLAGTFISTVGIDFRNKVLDVDGVKV 60
Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           KL  WD  GQ   RS+   YY +AHA++ + D    + F++
Sbjct: 61  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDN 101

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    D  + T+G++  I  I + N   KL  W
Sbjct: 10  FKLLLIGDSGVGKSCLLLRF------ADDTYTDSYISTIGVDFKIRTISLENKTVKLQIW 63
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      F++ K
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVK 101

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 7   FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 98

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 7   FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 98

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 26  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 79
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 80  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 117

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 9   FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 100

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 34  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 88  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 125

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK  LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 17  FKLLLIGDSGVGKNCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 108

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
           F +LI+G    GK++LL +        +       + T+G++  I  +E++  K  L  W
Sbjct: 10  FKLLIIGDSGVGKSSLLLRF------ADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY   H V+ V D      F + K
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK 101

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 17  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 108

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 18  FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +L++G    GK+ LL +     Y+N  +  +  D  + TV L+   +     KL  WD
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 63
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
             GQ   R+I   YY  +H ++ V D      F
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 96

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 18  FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +L++G    GK+ LL +     Y+N  +  +  D  + TV L+   +     KL  WD
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 63
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
             GQ   R+I   YY  +H ++ V D      F
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 96

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 10  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      + + K
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVK 101

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 30/131 (22%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-------LNIGRIEVSNSKL 70
           F V++LG    GKT+L      V    E    D+ + T+G       LNIG   V+   L
Sbjct: 7   FKVVLLGEGCVGKTSL------VLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN---L 57
Query: 71  VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALGKFFGMRIC---- 123
             WD  GQ    ++   YY +++  + V D      F+  K     L K  G  IC    
Sbjct: 58  AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117
Query: 124 -------KERH 127
                  KERH
Sbjct: 118 GNKIDLEKERH 128

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
           F ++++G    GKT ++++ K+      G   +R   T+G++       I+    KL  W
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKT------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
           D  GQ   R+I + YY  A+  +   D    S F
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSF 117

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 10  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  AH ++ V D      + + K
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVK 101

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVF 72
           +  V+I+G    GKT+L+E+        +    +    TVG++  I  +E+   K  L  
Sbjct: 26  KLQVIIIGSRGVGKTSLMERF------TDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           WD  GQ    SI   YY  A  ++ V D      F+D
Sbjct: 80  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD 116

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 18  FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +L++G    GK+ LL +     Y+N  +  +  D  + TV L+   +     KL  WD
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 76
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
             GQ   R+I   YY  +H ++ V D      F
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 109

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
           +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  WD 
Sbjct: 2   LLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 55
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
            GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 56  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 91

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
           +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  WD 
Sbjct: 1   LLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 54
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
            GQ   R+I   YY  AH ++ V D      F + K
Sbjct: 55  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 90

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLV---F 72
           F ++++G    GK+ LL +      N+E         T+G+      I++ N+K++    
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLES------KSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           WD  GQ   R+I   YY  A   + V D    + FE+
Sbjct: 62  WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFEN 98

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLV 71
           T   +LI+G    GK++LL +        +   P+ +  T+G++       ++ + +KL 
Sbjct: 14  TTLKILIIGESGVGKSSLLLRFTD-----DTFDPE-LAATIGVDFKVKTISVDGNKAKLA 67
Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
            WD  GQ   R++   YY  A  V+ V D      F
Sbjct: 68  IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	7e-45
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-44
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	5e-44
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	9e-44
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-43
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-42
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	9e-42
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-41
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	7e-41
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-40
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-39
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-39
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	6e-38
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-28
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	9e-28
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-27
2fh5_B	214	SR-beta, signal recognition particle receptor beta	8e-26
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-24
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-23
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-14
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	7e-09
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	6e-06
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	2e-05
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-05
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	9e-05
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-04
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-04
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-04
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-04
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	3e-04
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	4e-04
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	5e-04
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-04
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	6e-04

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  143 bits (363), Expect = 7e-45
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 7/111 (6%)

Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
           L   L K    + E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +
Sbjct: 5   LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTL 57

Query: 64  EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           E    KL  WD+GGQ  LRS W  Y+E    +++V+D+A   R +D +  L
Sbjct: 58  EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQREL 108

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  142 bits (360), Expect = 2e-44
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 8/116 (6%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           M  LF  +W+ +F   E  V+I+G+D AGKTT+L +                 PT+G N+
Sbjct: 1   MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFS-------MNEVVHTSPTIGSNV 52

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             I ++N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++  L K
Sbjct: 53  EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYK 108

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  141 bits (357), Expect = 5e-44
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           + S+   L        E  +L+LG+D AGKTTLL++L              I PT G NI
Sbjct: 2   LLSILRKLKS--APDQEVRILLLGLDNAGKTTLLKQLA-------SEDISHITPTQGFNI 52

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L +
Sbjct: 53  KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTE 108

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  140 bits (355), Expect = 9e-44
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 1   MFSLFYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN 59
           M ++F  ++  ++ +  E  +LILG+D AGKTT+L +L+               PT+G N
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGE-------VVTTKPTIGFN 53

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           +  +   N KL  WDLGGQ  +R  W  YY +  AV+FV+D+    R   +   L
Sbjct: 54  VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKEL 108

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  139 bits (353), Expect = 3e-43
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 7/108 (6%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
           GL     +K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ +I   
Sbjct: 13  GLVPR-GSKEEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKG 65

Query: 67  NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           N  +  WD+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L
Sbjct: 66  NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNEL 113

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  137 bits (346), Expect = 2e-42
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
           GL        E HVL LG+D +GKTT++ KLK             I+PT+G +I + + S
Sbjct: 13  GLVP--RGSKEVHVLCLGLDNSGKTTIINKLKP-----SNAQSQNILPTIGFSIEKFKSS 65

Query: 67  NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           +     +D+ GQ   R++WE YY+E  A++FVID++   R   +K  L  
Sbjct: 66  SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDT 115

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  135 bits (342), Expect = 9e-42
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 1   MFSLFYGLWKYI---FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG 57
           M +    L + +       +  VL+LG+D AGKT++L +L               VPTVG
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLH-------LGDVVTTVPTVG 55

Query: 58  LNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           +N+  ++  N     WDLGGQ G+R  W  Y+ +  AV++V+D+    R   +K  L
Sbjct: 56  VNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHEL 112

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  134 bits (340), Expect = 2e-41
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN 67
           L+  IF K +  +L++G+D AGKTT+L KLK              +PT+G N+  +E  N
Sbjct: 20  LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKN 72

Query: 68  SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
                WD+GGQ  +R +W  Y++    ++FV+D+    R ++S   L K
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQK 121

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  133 bits (336), Expect = 7e-41
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
           GL        E  V+I+G+D AGKTT+L +                 PT+G N+  I ++
Sbjct: 13  GLVP--RGSQEHKVIIVGLDNAGKTTILYQFS-------MNEVVHTSPTIGSNVEEIVIN 63

Query: 67  NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
           N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++  L K
Sbjct: 64  NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYK 113

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  132 bits (335), Expect = 1e-40
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 1   MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN 59
           +F  F  +   +        +L LG+D AGKTTLL  LK             + PT    
Sbjct: 6   IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLK-------NDRLATLQPTWHPT 58

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
              + + N K   +DLGG    R +W+ Y+ E + +VF++DAA P RF++++  L
Sbjct: 59  SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVEL 113

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  130 bits (329), Expect = 1e-39
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 1   MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN 59
           ++S F  + +++   K    ++ LG+D AGKTTLL  LK              VPT+   
Sbjct: 8   IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-------HVPTLHPT 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
              + ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L
Sbjct: 61  SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEEL 115

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  128 bits (325), Expect = 2e-39
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
               E  +LILG+D AGKTT+L +L+              +PT+G N+  +   N K   
Sbjct: 3   HMTREMRILILGLDGAGKTTILYRLQ-------VGEVVTTIPTIGFNVETVTYKNLKFQV 55

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           WDLGG   +R  W  YY    AV++V+D+    R   SK+ L
Sbjct: 56  WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 97

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  124 bits (315), Expect = 6e-38
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            +L++G+D AGKTT+L KLK              +PT+G N+  +E  N     WD+GGQ
Sbjct: 2   RILMVGLDAAGKTTILYKLK-------LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             +R +W  Y++    ++FV+D+    R  +++  L +
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 92

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  103 bits (258), Expect = 7e-28
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
             +      + +F K E  +L++G+D AGKTT+L KLK              +PT+G N+
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLK-------LGEIVTTIPTIGFNV 201

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116
             +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L +
Sbjct: 202 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 257

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  100 bits (250), Expect = 9e-28
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----PDRIVPTVGLNIGRIEVS---- 66
           +  F ++  G   +GKTT L+ + S                   T+  +   +++     
Sbjct: 12  EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71

Query: 67  -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117
             ++   + + GQ    +  +        +VFV D+A P+R   +  ++   
Sbjct: 72  FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNM 122

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 95.6 bits (238), Expect = 8e-26
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LV 71
            ++  VL +G+  +GKT L  +L +               ++  +    +V+N++   L 
Sbjct: 5   SSQRAVLFVGLCDSGKTLLFVRLLTG-------QYRDTQTSITDSSAIYKVNNNRGNSLT 57

Query: 72  FWDLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
             DL G   LR  + +++   A AVVFV+D+A   R     
Sbjct: 58  LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 98

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 90.6 bits (225), Expect = 4e-24
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
             +  ++I G   +GKT+LL  L +     + + P   V +    +   +   S +   D
Sbjct: 46  SYQPSIIIAGPQNSGKTSLLTLLTT-----DSVRP--TVVSQE-PLSAADYDGSGVTLVD 97

Query: 75  LGGQPGLRSIWEKYYEE----AHAVVFVIDAAC-PSRFEDSKTAL 114
             G   LR     Y +        ++F++D+   P +   +   L
Sbjct: 98  FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFL 142

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 89.8 bits (223), Expect = 2e-23
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 20/115 (17%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIE 64
           G+ +      +  ++I G   +GKT+LL  L +          D + PTV     +   +
Sbjct: 5   GIKQ---KSYQPSIIIAGPQNSGKTSLLTLLTT----------DSVRPTVVSQEPLSAAD 51

Query: 65  VSNSKLVFWDLGGQPGLRSIWEKYYEEA----HAVVFVIDAAC-PSRFEDSKTAL 114
              S +   D  G   LR     Y +        ++F++D+   P +   +   L
Sbjct: 52  YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFL 106

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 71.5 bits (175), Expect = 1e-16
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 10  KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNS 68
              F  ++  +L++G+ ++GK+++    K V+  +       +  T  +    I   S  
Sbjct: 13  NLYFQGSKPRILLMGLRRSGKSSI---QKVVFHKMSPNETLFLESTNKIYKDDISNSSFV 69

Query: 69  KLVFWDLGGQPGLRSIW---EKYYEEAHAVVFVIDAACPSRFEDSK 111
               WD  GQ          E  +    A+++VIDA        ++
Sbjct: 70  NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTR 115

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 65.0 bits (158), Expect = 8e-14
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ 78
           +L++G   +GK+++      ++SN       R+  T+ +    +  + N  L  WD GGQ
Sbjct: 6   LLLMGRSGSGKSSMR---SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 79  -----PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
                       +  ++    ++ V D       +D +
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE 100

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 51.2 bits (122), Expect = 7e-09
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           VL++G+ + GK+++    K V+ N++ L    +  T   ++     +   L   +L GQ 
Sbjct: 2   VLLMGVRRCGKSSI---CKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQL 57

Query: 80  GLRSIW---EKYYEEAHAVVFVIDA 101
                    E+ ++   A+V+VID+
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDS 82

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 43.1 bits (101), Expect = 6e-06
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 21/108 (19%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-------- 68
           E  V ++G   AGKT+LL++L      +      +   T GLN+   +  N         
Sbjct: 41  EIKVHLIGDGMAGKTSLLKQL------IGETFDPKESQTHGLNVVTKQAPNIKGLENDDE 94

Query: 69  ----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
                  FWD GGQ  + +  + +   +   + ++D        +   
Sbjct: 95  LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHY 139

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 7/39 (17%), Positives = 13/39 (33%)

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
              G +  +    +K  E     ++V +A    R E   
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD 145

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNS-----K 69
              ++I+G   +GKTTLL++        +         TVG+++    I++ +       
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQ----LMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLV 57

Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
           L  WD  G+    S    +  +    + V D
Sbjct: 58  LNVWDFAGREEFYSTHPHFMTQRALYLAVYD 88

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--K 69
           F       +++G    GKT LL      Y+      P   +PTV  N    + V      
Sbjct: 26  FQGQAIKCVVVGDGAVGKTCLL----ISYTT--NAFPGEYIPTVFDNYSANVMVDGKPVN 79

Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
           L  WD  GQ     +    Y +    +       P+ FE+ + 
Sbjct: 80  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRA 122

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
           ++++G  + GKT LL     V++      P+  VPTV  N       +++   L  WD  
Sbjct: 10  IVVVGDSQCGKTALL----HVFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 63

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           G P   ++    Y ++ AV+   D + P   +
Sbjct: 64  GSPYYDNVRPLSYPDSDAVLICFDISRPETLD 95

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
           ++I+G    GKT LL     V+S      P+  VPTV  N I  IEV     +L  WD  
Sbjct: 28  LVIVGDGACGKTCLL----IVFSK--DQFPEVYVPTVFENYIADIEVDGKQVELALWDTA 81

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
           GQ     +    Y +   ++       P   E+   
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE 117

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 20/101 (19%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG---------LNIGRIEVSNS 68
           F ++++G    GKTT +++       + G    + V T+G          N G I     
Sbjct: 16  FKLVLVGDGGTGKTTFVKRH------LTGEFEKKYVATLGVEVHPLVFHTNRGPI----- 64

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           K   WD  GQ     + + YY +A   + + D      +++
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
           V+++G    GKT+LL     V+++  G  P+   PTV    +  ++V      L  WD  
Sbjct: 37  VVLVGDGGCGKTSLL----MVFAD--GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTA 90

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           GQ     +   +Y +A  ++   D   P+ F+
Sbjct: 91  GQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD 122

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 53  VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103
           V T G+   + +V       +D+GGQ   R  W + + +  A++FV+ ++ 
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 252

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
           ++++G    GKT LL     V+S      P+  VPTV  N +  IEV     +L  WD  
Sbjct: 28  LVVVGDGACGKTCLL----IVFSK--DEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
           GQ     +    Y +   ++       P   E+   
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
           ++++G  + GKT +L     V +      P+  VPTV  N    +E      +L  WD  
Sbjct: 30  LVLVGDVQCGKTAML----QVLAK--DCYPETYVPTVFENYTACLETEEQRVELSLWDTS 83

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           G P   ++    Y ++ AV+   D + P   +
Sbjct: 84  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 115

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
            +++G    GKT+L+      Y+      P   +PT   N   +   + +   L   D  
Sbjct: 23  CVLVGDGAVGKTSLV----VSYTT--NGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
           GQ     +    Y      +       PS F++   
Sbjct: 77  GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSE 112

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
           ++++G  + GKT LL     V++      P+  VPTV  N       +++   L  WD  
Sbjct: 31  IVVVGDSQCGKTALL----HVFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 84

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           G P   ++    Y ++ AV+   D + P   +
Sbjct: 85  GSPYYDNVRPLSYPDSDAVLICFDISRPETLD 116

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 12/51 (23%), Positives = 21/51 (41%)

Query: 53  VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103
           V T G+        +     +D+GGQ   R  W   +E   A++F +  + 
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.94
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.93
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.92
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.92
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.92
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.91
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.91
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.91
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.91
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.9
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.9
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.89
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.89
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.88
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.88
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.88
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.87
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.87
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.87
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.87
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.87
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.87
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.87
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.87
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.87
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.86
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.86
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.86
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.86
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.86
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.86
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.86
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.86
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.86
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.86
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.86
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.86
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.85
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.85
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.85
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.85
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.85
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.85
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.85
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.85
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.85
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.85
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.85
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.85
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.85
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.85
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.85
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.85
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.84
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.84
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.84
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.84
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.84
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.84
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.84
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.84
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.84
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.84
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.84
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.84
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.84
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.84
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.84
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.84
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.84
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.84
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.84
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.83
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.83
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.83
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.83
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.83
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.83
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.83
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.83
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.83
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.83
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.83
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.83
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.82
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.82
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.81
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.81
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.81
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.81
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.8
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.8
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.79
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.78
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.78
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.77
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.64
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.77
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.77
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.76
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.76
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.75
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.73
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.73
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.73
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.72
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.69
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.69
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.67
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.67
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.67
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.66
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.66
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.66
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.65
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.64
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.64
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.64
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.63
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.63
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.63
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.62
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.62
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.62
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.62
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.61
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.6
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.59
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.59
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.58
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.58
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.55
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.55
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.55
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.54
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.54
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.53
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.52
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.5
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.5
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.5
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.49
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.49
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.49
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.48
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.48
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.47
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.46
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.46
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.45
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.45
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.44
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.44
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.44
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.44
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.43
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.43
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.42
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.42
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.42
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.42
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.42
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.41
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.41
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.41
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.41
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.4
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.4
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.39
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.39
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.39
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.36
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.36
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.36
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.35
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.35
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.34
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.32
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.29
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.27
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.27
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.25
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.25
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.23
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.23
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.21
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.19
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.19
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.18
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.05
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.0
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.87
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.87
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.78
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.75
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.7
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.62
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.56
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.54
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.52
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.5
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.48
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.37
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.36
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.28
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.23
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.22
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.18
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.13
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.98
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.92
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.91
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.88
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.87
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.83
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.82
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.81
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.81
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.79
1g6h_A	257	High-affinity branched-chain amino acid transport	97.78
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.77
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.76
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.76
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.74
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.72
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.72
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.71
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.71
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.71
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.69
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.69
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.68
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.67
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.66
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.66
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.66
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.65
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.65
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.65
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.64
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.64
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.64
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.63
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.62
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.62
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.59
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.59
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.58
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.58
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.58
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.58
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.57
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.57
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.55
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.54
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.54
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.53
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.53
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.52
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.52
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.51
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.51
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.49
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.48
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.48
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.48
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.48
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.46
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.46
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.45
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.44
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.43
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.41
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.41
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.4
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.4
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.4
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.39
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.38
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.37
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.37
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.37
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.37
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.36
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.36
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.36
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.36
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.35
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.35
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.34
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.34
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.33
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.32
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.32
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.32
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.32
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.32
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.32
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.32
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.3
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.3
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.3
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.3
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.3
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.3
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.29
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.29
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.29
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.29
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.29
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.28
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.28
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.27
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.27
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.27
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.25
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.25
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.24
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.24
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.23
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.23
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.22
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.22
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.22
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.21
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.21
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.21
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.2
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.2
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.2
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.2
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.19
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.19
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.19
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.17
1via_A	175	Shikimate kinase; structural genomics, transferase	97.17
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.16
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.16
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.15
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.15
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.13
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.13
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.13
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.12
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.1
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.1
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.1
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.09
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.09
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.09
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.07
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.07
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.07
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.07
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.07
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.07
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.06
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.06
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.06
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.06
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.06
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.05
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.05
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.04
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.03
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.03
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.02
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.02
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.0
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.0
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.0
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.99
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.99
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.99
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.99
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.99
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.99
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.98
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.98
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.97
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.97
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.97
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.97
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.97
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.95
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.94
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.94
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.93
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.93
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.91
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.91
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.91
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.9
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.9
3bos_A	242	Putative DNA replication factor; P-loop containing	96.9
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.88
2og2_A	359	Putative signal recognition particle receptor; nuc	96.87
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.87
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.87
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.84
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.83
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.83
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.83
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.82
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.82
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.82
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.82
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.81
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.8
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.8
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.79
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.79
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.78
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.77
2xxa_A	433	Signal recognition particle protein; protein trans	96.77
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.77
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.76
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.75
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.74
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.74
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.72
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.68
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.68
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.66
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.66
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.61
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.61
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.6
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.57
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.53
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.53
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.53
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.52
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.52
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.51
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.51
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.49
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.49
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.49
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.49
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.49
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.48
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.48
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.47
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.47
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.46
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.45
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.43
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.41
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.41
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.4
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.4
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.38
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.37
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.36
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.36
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.34
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.33
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.3
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.3
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.29
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.28
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.27
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.24
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.23
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.23
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.23
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.23
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.19
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.19
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.17
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.15
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.14
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.14
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.12
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.11
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.1
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.09
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.09
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.08
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.07
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.06
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.05
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.04
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.03
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.02
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.02
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.01
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.01
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.0
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.98

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=4.3e-26  Score=148.23  Aligned_cols=113  Identities=35%  Similarity=0.688  Sum_probs=98.2

Q ss_pred             ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus         1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      ||+++++++. +++++.+||+++|+++||||||++++..      +.+. .+.+|.+.....+.+++..+.+||++|.+.
T Consensus         1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~   72 (187)
T 1zj6_A            1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM------NEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQES   72 (187)
T ss_dssp             -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT------TSCE-EEECCSCSSCEEEEETTEEEEEEECCC---
T ss_pred             CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc------CCCC-cCcCCCccceEEEEECCEEEEEEECCCCHh
Confidence            8999999999 7788999999999999999999999997      5555 567788877778888899999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +...+..+++++|++++|+|++++++++++..|+.++....
T Consensus        73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~  113 (187)
T 1zj6_A           73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE  113 (187)
T ss_dssp             -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch
Confidence            99999999999999999999999999999999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=1.1e-25  Score=145.36  Aligned_cols=114  Identities=35%  Similarity=0.660  Sum_probs=98.2

Q ss_pred             ChhhhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075            1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (128)
Q Consensus         1 m~~~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   79 (128)
                      ||++++++++.++. ++.+||+++|++|||||||++++..      +.+ ..+.+|.+.....+.+++..+.+||+||.+
T Consensus         1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~   73 (183)
T 1moz_A            1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI------GEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQT   73 (183)
T ss_dssp             -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC------SEE-EEECSSTTCCEEEEEETTEEEEEEEEC---
T ss_pred             CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc------CCc-CccCCcCccceEEEEECCEEEEEEECCCCH
Confidence            89999999998887 8999999999999999999999987      444 456678887778888888999999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      .+...+..+++.+|++++|+|++++++++.+..|+.++....
T Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~  115 (183)
T 1moz_A           74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE  115 (183)
T ss_dssp             -CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS
T ss_pred             hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh
Confidence            998888999999999999999999999999999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.92  E-value=9.7e-25  Score=141.52  Aligned_cols=114  Identities=36%  Similarity=0.640  Sum_probs=92.7

Q ss_pred             hhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch
Q 033075            4 LFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR   82 (128)
Q Consensus         4 ~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~   82 (128)
                      +++ .+..++. ++.+||+++|++++|||||++++..      +. ...+.+|.+.....+.+++..+.+||+||.+.+.
T Consensus         5 ~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~   76 (186)
T 1ksh_A            5 LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNG------ED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR   76 (186)
T ss_dssp             -------------CCEEEEEECSTTSSHHHHHHHHTT------CC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred             hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhc------CC-CCcccccCccceEEEEECCEEEEEEECCCCHhHH
Confidence            544 5666655 7899999999999999999999998      55 5567788998888888889999999999999999


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE  125 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~  125 (128)
                      ..+..+++++|++++|+|++++++++++..|+.++.......+
T Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  119 (186)
T 1ksh_A           77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG  119 (186)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCC
Confidence            9999999999999999999999999999999999987644333

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.92  E-value=1.7e-25  Score=145.57  Aligned_cols=119  Identities=32%  Similarity=0.578  Sum_probs=99.7

Q ss_pred             ChhhhHHHHh--hhhc-cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC
Q 033075            1 MFSLFYGLWK--YIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (128)
Q Consensus         1 m~~~~~~~~~--~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g   77 (128)
                      ||++++++++  .++. ++.+||+++|++++|||||++++..      +.+. .+.+|.+.....+.+++..+.+||+||
T Consensus         3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G   75 (189)
T 2x77_A            3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHL------GDVV-TTVPTVGVNLETLQYKNISFEVWDLGG   75 (189)
T ss_dssp             ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCC------SCCE-EECSSTTCCEEEEEETTEEEEEEEECC
T ss_pred             hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHc------CCCC-CcCCCCceEEEEEEECCEEEEEEECCC
Confidence            8888887777  5556 7899999999999999999999987      4443 356788887788888899999999999


Q ss_pred             CccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      ++.+...+..+++.+|++++|+|++++++++++..|+.++.......+.
T Consensus        76 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  124 (189)
T 2x77_A           76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS  124 (189)
T ss_dssp             SSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred             CHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence            9999888888999999999999999999999999999999876543333

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.92  E-value=1.6e-24  Score=144.60  Aligned_cols=100  Identities=21%  Similarity=0.397  Sum_probs=80.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+++||+++|+++||||||++++..      +.+...+.+|++.+.  ..+..++  +.+.+||++|+++|+.++..|++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~------~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~   84 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIR   84 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH------SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHT
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHh------CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhc
Confidence            4679999999999999999999999      889889999998664  3445555  78999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++++++|||++++++|+++..|+..+...
T Consensus        85 ~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~  114 (216)
T 4dkx_A           85 DSAAAVVVYDITNVNSFQQTTKWIDDVRTE  114 (216)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             cccEEEEEeecchhHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.91  E-value=1.2e-23  Score=137.33  Aligned_cols=120  Identities=32%  Similarity=0.583  Sum_probs=91.1

Q ss_pred             ChhhhHHHHhhh-hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075            1 MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (128)
Q Consensus         1 m~~~~~~~~~~~-~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   79 (128)
                      |+.++.+.+..+ ...+.+||+++|++|||||||++++..      +.+. .+.+|.+.....+.+++..+.+||+||++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~   78 (190)
T 1m2o_B            6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN------DRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHI   78 (190)
T ss_dssp             ------------------CEEEEEESTTSSHHHHHHHHHH------SCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhc------CCCC-ccccCCCCCeEEEEECCEEEEEEECCCCH
Confidence            445555555544 346788999999999999999999998      5543 46688888888888999999999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      .++..+..+++.+|++++|||++++++|+++..|+.++.......+.|
T Consensus        79 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  126 (190)
T 1m2o_B           79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP  126 (190)
T ss_dssp             GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC
T ss_pred             HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC
Confidence            999998999999999999999999999999999999998765444443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.91  E-value=3.3e-24  Score=140.23  Aligned_cols=116  Identities=33%  Similarity=0.637  Sum_probs=94.9

Q ss_pred             hhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075            4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (128)
Q Consensus         4 ~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~   83 (128)
                      +..++++.+..++.+||+++|+++||||||++++..      +.+. .+.||.+.....+...+..+.+||+||.+.+..
T Consensus        16 ~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   88 (192)
T 2b6h_A           16 PRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRP   88 (192)
T ss_dssp             -CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCS------SCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CT
T ss_pred             hHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHh------CCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHH
Confidence            344667777788999999999999999999999987      5554 356788887778888889999999999999999


Q ss_pred             hHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      .+..+++++|++++|||++++++++.+..|+.++.......+.
T Consensus        89 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~  131 (192)
T 2b6h_A           89 LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA  131 (192)
T ss_dssp             THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC
Confidence            9999999999999999999999999999999999876544333

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.91  E-value=8e-24  Score=139.06  Aligned_cols=115  Identities=27%  Similarity=0.464  Sum_probs=89.4

Q ss_pred             HHHHhhh-hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075            6 YGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (128)
Q Consensus         6 ~~~~~~~-~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   84 (128)
                      +.++..+ ...+.+||+++|++|||||||++++..      +.+. .+.+|.+.....+.+++..+.+||+||++.++.+
T Consensus        13 ~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~   85 (198)
T 1f6b_A           13 SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD------DRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV   85 (198)
T ss_dssp             CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC------C-------CCCCCSCEEEEETTEEEEEEEECC----CCG
T ss_pred             HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc------CCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHH
Confidence            3444444 346788999999999999999999987      4443 4567777777788888999999999999999999


Q ss_pred             HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +..+++.+|++++|||++++++|+++..|+.++.......+.|
T Consensus        86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p  128 (198)
T 1f6b_A           86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP  128 (198)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc
Confidence            9999999999999999999999999999999998765444443

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.91  E-value=5.9e-23  Score=133.61  Aligned_cols=109  Identities=33%  Similarity=0.634  Sum_probs=95.9

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ...++.+||+++|++++|||||++++..      +.+...+.+|.+.....+...+..+.+||++|.+.+...+..+++.
T Consensus        17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   90 (188)
T 1zd9_A           17 RGSKEEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRG   90 (188)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTT
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHHc------CCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHcc
Confidence            3456789999999999999999999998      7777777889998888888888999999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      +|++++|||++++++++.+..|+.++.......+.
T Consensus        91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~  125 (188)
T 1zd9_A           91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI  125 (188)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC
Confidence            99999999999999999999999999876443333

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.90  E-value=8.4e-23  Score=132.33  Aligned_cols=106  Identities=37%  Similarity=0.650  Sum_probs=92.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      .+.+||+++|++|||||||++++..      +.+ ..+.+|.|.....+.+++..+.+||++|++.++..+..+++.+|+
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~------~~~-~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   86 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS------EDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC------SCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc------CCC-CcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            5789999999999999999999987      432 356788888878888889999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +++|||++++++++++..|+.+++......+.|
T Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  119 (181)
T 1fzq_A           87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVP  119 (181)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC
Confidence            999999999999999999999988765444443

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.90  E-value=1.3e-22  Score=128.82  Aligned_cols=102  Identities=31%  Similarity=0.695  Sum_probs=88.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~   97 (128)
                      +||+++|++++|||||++++..      +.+.. +.||.+.....+...+..+.+||+||++.+...+..+++++|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   73 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKL------GEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH------HCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHc------CCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence            5899999999999999999998      44443 4678887777787888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           98 VIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        98 v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      |||++++++++.+..|+.++.......+.
T Consensus        74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  102 (164)
T 1r8s_A           74 VVDSNDRERVNEAREELMRMLAEDELRDA  102 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence            99999999999999999999876544333

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.89  E-value=2.2e-22  Score=128.36  Aligned_cols=104  Identities=36%  Similarity=0.655  Sum_probs=91.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      ++.+||+++|++++|||||++++..      +.+. .+.+|.+.....+.+++..+.+||+||.+.+...+..+++.+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   77 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV------GEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDA   77 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH------SSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc------CCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCE
Confidence            4679999999999999999999998      5543 45678888888888889999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMRICKE  125 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~  125 (128)
                      +++|+|++++++++.+..|+.++.......+
T Consensus        78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  108 (171)
T 1upt_A           78 VIYVVDSCDRDRIGISKSELVAMLEEEELRK  108 (171)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCGGGTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhchhhCC
Confidence            9999999999999999999999987654333

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.89  E-value=1.1e-22  Score=132.85  Aligned_cols=103  Identities=30%  Similarity=0.600  Sum_probs=90.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-CCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .....||+++|+++||||||++++..      +.+.. .+.+|.+.....+...+..+.+||++|++.+...+..+++.+
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKP------AQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSC------CC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhc------CCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            45789999999999999999999998      66666 678899988888888889999999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      |++++|||++++++|+++..|+.+++....
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~  117 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHED  117 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHH
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChh
Confidence            999999999999999999999999987743

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.88  E-value=1.1e-22  Score=131.47  Aligned_cols=101  Identities=34%  Similarity=0.644  Sum_probs=89.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      ..+.+||+++|++++|||||++++..      +.+ ..+.+|.+.....+.+++..+.+||++|.+.+...+..+++.+|
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSM------NEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHT------TSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc------CCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            35789999999999999999999998      555 46678888777888888999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++++|+|++++++++++..|+.++....
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~  118 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHE  118 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCG
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhCh
Confidence            9999999999999999999999988764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.88  E-value=1.9e-22  Score=131.28  Aligned_cols=103  Identities=36%  Similarity=0.660  Sum_probs=90.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-CCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      ..+.+||+++|++++|||||++++..      +. +...+.+|.+.....+.+++..+.+||++|++.+...+..+++++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKP------SNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSC------GGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhc------CCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcC
Confidence            35789999999999999999999987      44 345677888888888888889999999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      |++++|||++++++++.+..|+.++.....
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  121 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPD  121 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChh
Confidence            999999999999999999999999887643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.88  E-value=1.1e-21  Score=127.54  Aligned_cols=102  Identities=25%  Similarity=0.301  Sum_probs=86.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      +.+.+||+++|++|||||||++++..      +.+...+.+|.+.....+.+++  ..+.+||++|++.+.     +++.
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~   85 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLT------GTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW   85 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHH------SSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence            46789999999999999999999999      7777777777665556777777  678889999998876     7789


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      +|++++|||++++++|+++..|+.++.......+.
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  120 (184)
T 3ihw_A           86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV  120 (184)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999877544443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.87  E-value=5.2e-22  Score=127.46  Aligned_cols=100  Identities=24%  Similarity=0.355  Sum_probs=86.5

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc--eEEEEEEECC---eEEEEEeCCCCccchhhHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSN---SKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      ..+.+||+++|++++|||||++++..      +.+...+.+|.+  .....+.+++   ..+.+||++|++.+...+..+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~   76 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQ------ETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKY   76 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHG------GGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHH
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHh------CcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHH
Confidence            35689999999999999999999998      555555667776  4456677766   789999999999999999999


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++.+|++++|||++++++++++..|+.++..
T Consensus        77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  107 (178)
T 2hxs_A           77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKK  107 (178)
T ss_dssp             HTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.87  E-value=1.7e-21  Score=123.67  Aligned_cols=99  Identities=19%  Similarity=0.367  Sum_probs=85.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +.+||+++|++++|||||++++..      +.+...+.+|.+.... .+.+++  ..+.+||+||.+.+...+..+++.+
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   75 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG   75 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC
Confidence            468999999999999999999998      6666677777776543 334443  6799999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++++.+..|+..+...
T Consensus        76 d~~i~v~d~~~~~s~~~~~~~~~~i~~~  103 (167)
T 1c1y_A           76 QGFALVYSITAQSTFNDLQDLREQILRV  103 (167)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999888764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.87  E-value=1.9e-21  Score=125.55  Aligned_cols=101  Identities=18%  Similarity=0.273  Sum_probs=87.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ..+.+||+++|++++|||||++++..      +.+...+.++.+... .....++  ..+.+||++|++.+...+..+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   88 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQ------KIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR   88 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence            45789999999999999999999998      666667777777654 4455666  45777999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|||++++++|+.+..|+..+...
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  118 (183)
T 3kkq_A           89 TGDGFLIVYSVTDKASFEHVDRFHQLILRV  118 (183)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.87  E-value=3.3e-21  Score=122.18  Aligned_cols=100  Identities=14%  Similarity=0.243  Sum_probs=83.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +.+||+++|++|+|||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||.+.+...+..+++.+
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   76 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   76 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh------CccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcC
Confidence            578999999999999999999998      666666677777654 3455666  5899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      |++++|||++++++++.+..|+.++....
T Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  105 (168)
T 1u8z_A           77 EGFLCVFSITEMESFAATADFREQILRVK  105 (168)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999887644

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.87  E-value=1.4e-21  Score=125.96  Aligned_cols=103  Identities=23%  Similarity=0.271  Sum_probs=88.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ..+.+||+++|++++|||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||.+.+...+..+++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   76 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVE------GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSI   76 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTT
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHh
Confidence            35789999999999999999999998      667777778877654 4555666  67899999999999888889999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      .+|++++|||++++++++.+..|+.++.....
T Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  108 (181)
T 3t5g_A           77 DINGYILVYSVTSIKSFEVIKVIHGKLLDMVG  108 (181)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998866543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.87  E-value=5.9e-21  Score=120.95  Aligned_cols=100  Identities=23%  Similarity=0.365  Sum_probs=85.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +.+||+++|++++|||||++++..      +.+...+.++.+.. ...+.+++  ..+.+||+||++.+..++..+++.+
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   75 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVT------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG   75 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc------CCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence            468999999999999999999998      66666666776644 34556666  5699999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      |++++|||++++++++.+..|+.++....
T Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~  104 (167)
T 1kao_A           76 QGFILVYSLVNQQSFQDIKPMRDQIIRVK  104 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999998887643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.87  E-value=2.6e-21  Score=125.73  Aligned_cols=102  Identities=28%  Similarity=0.505  Sum_probs=86.5

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccch-hhHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLR-SIWEKY   88 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~   88 (128)
                      ..+.+||+++|++++|||||++++..      +.+...+.++.+.+  ...+.+++  ..+.+||++|.+.+. .++..+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   90 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCA------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY   90 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHH------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHH
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHH
Confidence            35689999999999999999999998      66666666777644  45566666  689999999999998 788999


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++.+|++++|||++++.+++.+..|+.++....
T Consensus        91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~  123 (189)
T 1z06_A           91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL  123 (189)
T ss_dssp             HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999887643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.87  E-value=3.1e-21  Score=123.92  Aligned_cols=100  Identities=16%  Similarity=0.268  Sum_probs=87.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|++|+|||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||+||.+.+...+..+++.
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   80 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQ------SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA   80 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHH------SSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh------CcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence            4679999999999999999999999      666667778877654 4456666  678999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +|++++|||++++++++.+..|+.++...
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  109 (181)
T 2fn4_A           81 GHGFLLVFAINDRQSFNEVGKLFTQILRV  109 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=7.4e-21  Score=120.90  Aligned_cols=99  Identities=24%  Similarity=0.459  Sum_probs=86.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      +.+||+++|++++|||||++++..      +.+...+.++.+...  ..+.+++  ..+.+||+||++.+...+..+++.
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   75 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVS------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN   75 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhcc
Confidence            468999999999999999999998      666666777777553  4555665  689999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +|++++|+|++++.+++++..|+..+...
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  104 (170)
T 1ek0_A           76 AQAALVVYDVTKPQSFIKARHWVKELHEQ  104 (170)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEecCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.86  E-value=3.3e-21  Score=124.99  Aligned_cols=101  Identities=21%  Similarity=0.370  Sum_probs=87.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE---EEEECC-----------eEEEEEeCCCCcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSN-----------SKLVFWDLGGQPG   80 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~---~~~~~~-----------~~~~~~D~~g~~~   80 (128)
                      ...+||+++|++++|||||++++..      +.+...+.+|.+.+..   .+..++           ..+.+||+||.+.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD------GKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc------CCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            4679999999999999999999998      6666677788887644   444442           5899999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +...+..+++.+|++++|||++++.+++.+..|+..+....
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  123 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA  123 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999887543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=4.2e-21  Score=125.48  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=84.8

Q ss_pred             hhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHH
Q 033075           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEK   87 (128)
Q Consensus        11 ~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~   87 (128)
                      .....+.+||+++|++++|||||++++..      +.+...+.++.+.... .+.+++  ..+.+||++|.+. ...+..
T Consensus        22 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~   94 (196)
T 2atv_A           22 SMAKSAEVKLAIFGRAGVGKSALVVRFLT------KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREG   94 (196)
T ss_dssp             -----CCEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHH
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhh
Confidence            34456789999999999999999999999      6666677788776543 355665  6799999999988 778889


Q ss_pred             hhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           88 YYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++.+|++++|||++++++++.+..|+..+...
T Consensus        95 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~  127 (196)
T 2atv_A           95 HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI  127 (196)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998887664

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.86  E-value=7.6e-21  Score=120.85  Aligned_cols=100  Identities=23%  Similarity=0.392  Sum_probs=86.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+.+||+++|++++|||||++++..      +.+...+.++.+...  ..+.+++  ..+.+||+||++.+...+..+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   77 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVK------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYR   77 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhcc
Confidence            5689999999999999999999998      666666777777653  4455554  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|||++++++++.+..|+.++...
T Consensus        78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  107 (170)
T 1r2q_A           78 GAQAAIVVYDITNEESFARAKNWVKELQRQ  107 (170)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999888654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=4.1e-21  Score=124.88  Aligned_cols=101  Identities=27%  Similarity=0.469  Sum_probs=87.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+.+||+++|++++|||||++++..      ..+...+.++.+...  ..+.+++  ..+.+||+||++.+...+..+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   86 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTD------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR   86 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc------CCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence            4679999999999999999999998      666667777777553  4555655  78999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      .+|++++|||++++.+++.+..|+.++....
T Consensus        87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~  117 (195)
T 1x3s_A           87 GAQGVILVYDVTRRDTFVKLDNWLNELETYC  117 (195)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHTTCC
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999987754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.86  E-value=7e-21  Score=123.13  Aligned_cols=102  Identities=20%  Similarity=0.296  Sum_probs=83.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ++.+||+++|++|||||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||++.+...+..+++.
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   75 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT   75 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHH------SSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhc
Confidence            4689999999999999999999998      666666666665443 4555666  558889999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +|++++|||++++++++.+..|+..+.....
T Consensus        76 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  106 (189)
T 4dsu_A           76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKD  106 (189)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999998876443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.86  E-value=4.1e-21  Score=126.30  Aligned_cols=100  Identities=25%  Similarity=0.467  Sum_probs=80.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.+|.+.+  ...+.+++  ..+.+||++|++.+..++..+++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~  100 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKT------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR  100 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH------SCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhh------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence            4579999999999999999999998      66666777777643  45666776  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|||++++++++++..|+.++...
T Consensus       101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~  130 (201)
T 2hup_A          101 SANGAILAYDITKRSSFLSVPHWIEDVRKY  130 (201)
T ss_dssp             TCSEEEEEEETTBHHHHHTHHHHHHHHHHH
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999888653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.86  E-value=9.8e-21  Score=124.14  Aligned_cols=103  Identities=14%  Similarity=0.224  Sum_probs=88.4

Q ss_pred             hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      ...+.++|+++|++|||||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||.+.+...+..++
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   83 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF   83 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHH
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHH
Confidence            345789999999999999999999998      666667777777653 4556666  5899999999999999999999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +.+|++++|||++++++++.+..|+..+....
T Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~  115 (206)
T 2bov_A           84 RSGEGFLCVFSITEMESFAATADFREQILRVK  115 (206)
T ss_dssp             HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999887644

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.86  E-value=8.6e-21  Score=122.40  Aligned_cols=101  Identities=14%  Similarity=0.233  Sum_probs=87.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|++++|||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||.+.+...+..+++.
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   89 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS   89 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhh------CCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhcc
Confidence            4689999999999999999999998      666667777777654 4455666  579999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +|++++|||++++++++.+..|+.++....
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  119 (187)
T 2a9k_A           90 GEGFLCVFSITEMESFAATADFREQILRVK  119 (187)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999887644

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.86  E-value=8.1e-21  Score=123.52  Aligned_cols=101  Identities=23%  Similarity=0.207  Sum_probs=81.8

Q ss_pred             hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      ...+.+||+++|+++||||||++++..      +.+...+.+|.+..+ ..+.+++  ..+.+||++|++.+..+ ..++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~   89 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLT------KRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYL   89 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHH
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHH
Confidence            346789999999999999999999999      777777788888654 3445555  67899999999988775 5788


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +.+|++++|||++++++|+++..|+.++...
T Consensus        90 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~  120 (187)
T 3c5c_A           90 NWAHAFLVVYSVDSRQSFDSSSSYLELLALH  120 (187)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.86  E-value=4.6e-21  Score=125.83  Aligned_cols=109  Identities=19%  Similarity=0.155  Sum_probs=85.9

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEEC--CeEEEEEeCCCCccchhhHHHh
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS--NSKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      ....+.+||+++|++|||||||++++..      +.+...+.++.+... ..+.+.  ...+.+||++|.+.+...+..+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   92 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVE------GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSF   92 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHH------SCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGG
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHH
Confidence            3446789999999999999999999999      777677777777654 223333  3789999999999999999999


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      ++.+|++++|||++++++++.+..|+..+.......+.
T Consensus        93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  130 (201)
T 3oes_A           93 IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV  130 (201)
T ss_dssp             TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CC
T ss_pred             HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999876443333

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=7.8e-21  Score=125.22  Aligned_cols=99  Identities=29%  Similarity=0.535  Sum_probs=86.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.+|.+.+.  ..+.+++  ..+.+||++|++.+...+..+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR   97 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence            4579999999999999999999998      667667778877653  4566666  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        98 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~  126 (201)
T 2ew1_A           98 SANALILTYDITCEESFRCLPEWLREIEQ  126 (201)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.86  E-value=1.4e-20  Score=120.65  Aligned_cols=101  Identities=27%  Similarity=0.348  Sum_probs=86.4

Q ss_pred             hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHh
Q 033075           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      .....+||+++|++++|||||++++..      +.+...+.++.+..  ...+.+++  ..+.+||+||.+.+...+..+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   84 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY   84 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHH
Confidence            345789999999999999999999998      66666666776654  34555655  689999999999999999999


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++.+|++++|+|++++.+++.+..|+.++..
T Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  115 (179)
T 1z0f_A           85 YRGAAGALMVYDITRRSTYNHLSSWLTDARN  115 (179)
T ss_dssp             HHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             hccCCEEEEEEeCcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.86  E-value=1.7e-20  Score=120.61  Aligned_cols=101  Identities=24%  Similarity=0.360  Sum_probs=86.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      +...+||+++|++++|||||++++..      +.+.....++.+..  ...+.+++  ..+.+||+||++.+...+..++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   82 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVK------DQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY   82 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHH------CCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHc------CCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence            35689999999999999999999998      66666666776644  34555665  6899999999999999999999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +.+|++++|||++++.+++.+..|+..+...
T Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  113 (181)
T 2efe_B           83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQ  113 (181)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=9.4e-21  Score=124.16  Aligned_cols=103  Identities=22%  Similarity=0.450  Sum_probs=78.1

Q ss_pred             hhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHH
Q 033075           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWE   86 (128)
Q Consensus        11 ~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~   86 (128)
                      .+...+.+||+++|++++|||||++++..      +.+...+.++.+.+  ...+.+++  ..+.+||+||.+.+...+.
T Consensus        22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   95 (199)
T 2p5s_A           22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCK------NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAK   95 (199)
T ss_dssp             ------CEEEEEESSTTSSHHHHHHHHHH------CCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHH
T ss_pred             CcCcCCCeEEEEECcCCCCHHHHHHHHHh------CCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHH
Confidence            44556789999999999999999999998      66666666777644  35566666  6799999999999999999


Q ss_pred             HhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+++.+|++++|||++++.+++.+..|+..+..
T Consensus        96 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~  128 (199)
T 2p5s_A           96 SYFRKADGVLLLYDVTCEKSFLNIREWVDMIED  128 (199)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1.6e-20  Score=122.40  Aligned_cols=99  Identities=25%  Similarity=0.396  Sum_probs=86.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+.+||+++|++++|||||++++..      +.+...+.++.+....  .+.+++  ..+.+||+||.+.+...+..+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   94 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQ------DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR   94 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH------CCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence            5689999999999999999999998      6666677788886543  344443  78999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~  123 (192)
T 2fg5_A           95 GSAAAVIVYDITKQDSFYTLKKWVKELKE  123 (192)
T ss_dssp             TCSEEEEEEETTCTHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.85  E-value=1.6e-20  Score=122.46  Aligned_cols=100  Identities=22%  Similarity=0.396  Sum_probs=86.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC------------------------
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN------------------------   67 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~------------------------   67 (128)
                      +.+.+||+++|++++|||||+++++.      ..+...+.++.+...  ..+.+++                        
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTK------DTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNV   77 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSCEEEEEEEETTC------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh------CcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccc
Confidence            45789999999999999999999999      666667777777543  3444444                        


Q ss_pred             ---------------eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           68 ---------------SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        68 ---------------~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                                     ..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+.++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~  144 (208)
T 3clv_A           78 IITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI  144 (208)
T ss_dssp             -------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence                           6899999999999999999999999999999999999999999999988865

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.85  E-value=7.8e-21  Score=121.03  Aligned_cols=99  Identities=22%  Similarity=0.431  Sum_probs=78.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+...  ..+.+++  ..+.+||+||++.+...+..+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   77 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCE------NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR   77 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHH------CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHc------CCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc
Confidence            4679999999999999999999998      666667777777654  3555555  68999999999999988889999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|+|++++++++.+..|+..+..
T Consensus        78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  106 (170)
T 1z08_A           78 DSNGAILVYDITDEDSFQKVKNWVKELRK  106 (170)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.85  E-value=8e-21  Score=123.04  Aligned_cols=100  Identities=25%  Similarity=0.444  Sum_probs=84.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ....+||+++|++++|||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|++.+...+..+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   77 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP   77 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcC
Confidence            45789999999999999999999999      677667778877654 3444544  78999999999999999899999


Q ss_pred             ccCEEEEEEECCCcccHHHH-HHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDS-KTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~~  119 (128)
                      .+|++++|||++++++++++ ..|+..+..
T Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~  107 (184)
T 1m7b_A           78 DSDAVLICFDISRPETLDSVLKKWKGEIQE  107 (184)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 678777654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.85  E-value=8.7e-21  Score=125.92  Aligned_cols=100  Identities=24%  Similarity=0.405  Sum_probs=84.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|+++||||||++++..      +.+...+.+|.+.... .+.+++  ..+.+||++|++.+..++..+++.
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   98 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD   98 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence            4689999999999999999999999      7777788888887653 333444  789999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHH-HHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFED-SKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~-~~~~l~~~~~~  120 (128)
                      +|++++|||++++++|++ +..|+..+...
T Consensus        99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~  128 (214)
T 3q3j_B           99 SDAVLLCFDISRPETVDSALKKWRTEILDY  128 (214)
T ss_dssp             CSEEEEEEETTCTHHHHHHHTHHHHHHHHH
T ss_pred             CeEEEEEEECcCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999 68888887653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.85  E-value=2e-20  Score=119.94  Aligned_cols=99  Identities=20%  Similarity=0.432  Sum_probs=83.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+.+||+++|++++|||||++++..      +.+...+.++.+.+.  ..+.+++  ..+.+||+||++.+...+..+++
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   78 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR   78 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHh
Confidence            4689999999999999999999998      666667777877653  4556666  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  107 (177)
T 1wms_A           79 GSDCCLLTFSVDDSQSFQNLSNWKKEFIY  107 (177)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.85  E-value=9.7e-21  Score=120.26  Aligned_cols=100  Identities=23%  Similarity=0.459  Sum_probs=85.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++|+|||||++++..      +.+...+.++.+.+  ...+.+++  ..+.+||+||++.+...+..+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   76 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYR   76 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHH------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHT
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhc
Confidence            4689999999999999999999998      66666677776644  34555665  68999999999999888899999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|+|++++++++.+..|+.++...
T Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  106 (168)
T 1z2a_A           77 GAQACVLVFSTTDRESFEAISSWREKVVAE  106 (168)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999887653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.85  E-value=2.7e-20  Score=118.44  Aligned_cols=99  Identities=23%  Similarity=0.402  Sum_probs=86.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+.+||+++|++++|||||++++..      +.+...+.++.+...  ..+.+.+  ..+.+||+||.+.+...+..+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~   77 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVE------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR   77 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCc
Confidence            4579999999999999999999999      666667777777653  4455655  78999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++.+++.+..|+..+..
T Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~  106 (170)
T 1z0j_A           78 GSAAAIIVYDITKEETFSTLKNWVRELRQ  106 (170)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.85  E-value=1.9e-20  Score=120.96  Aligned_cols=99  Identities=26%  Similarity=0.373  Sum_probs=85.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+..  ...+.+++  ..+.+||+||++.+...+..+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   81 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIE------KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR   81 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence            4679999999999999999999998      66666667777754  34556666  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  110 (186)
T 2bme_A           82 GAAGALLVYDITSRETYNALTNWLTDARM  110 (186)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.85  E-value=2.3e-20  Score=121.54  Aligned_cols=100  Identities=29%  Similarity=0.505  Sum_probs=87.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+..  ...+.+++  ..+.+||+||++.+...+..+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   87 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR   87 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence            4678999999999999999999998      66666777777754  45666776  67999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|||++++++++.+..|+..+...
T Consensus        88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  117 (196)
T 3tkl_A           88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRY  117 (196)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             hCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999887543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.85  E-value=2.6e-20  Score=117.70  Aligned_cols=99  Identities=19%  Similarity=0.293  Sum_probs=83.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +.+||+++|++|+|||||++++..      +.+...+.++.+... ..+..++  ..+.+||+||.+.+...+..+++.+
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   75 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQ------NHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG   75 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHh------CcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccC
Confidence            368999999999999999999998      555556666666543 4455555  5689999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      |++++|||++++++++++..|+.++...
T Consensus        76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~  103 (166)
T 2ce2_X           76 EGFLCVFAINNTKSFEDIHQYREQIKRV  103 (166)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999887654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.85  E-value=1.5e-20  Score=122.60  Aligned_cols=99  Identities=23%  Similarity=0.349  Sum_probs=84.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ..+.+||+++|++++|||||++++..      +.+...+.+|.+.... .+.+++  ..+.+||++|++.+...+..+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   93 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSK------GEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA   93 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhc------CCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence            35689999999999999999999999      7777777888887653 445555  56799999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHH-HHHHHHHh
Q 033075           91 EAHAVVFVIDAACPSRFEDS-KTALGKFF  118 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~  118 (128)
                      ++|++++|||++++++++++ ..|+..+.
T Consensus        94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  122 (194)
T 3reg_A           94 DSDVVLLCFAVNNRTSFDNISTKWEPEIK  122 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999997 56776665

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.85  E-value=1.2e-20  Score=119.86  Aligned_cols=104  Identities=20%  Similarity=0.201  Sum_probs=63.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .+||+++|++|+|||||++++..      .... ...++.+... ..+.+++  ..+.+||++|++.+...+..+++.+|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   74 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGG------VEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGD   74 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCC------C-----------CEEEEEEEETTEEEEEEEEECC---------------CC
T ss_pred             eEEEEEECCCCCCHHHHHHHHcC------cccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCC
Confidence            58999999999999999999986      2222 2234444332 3445555  67899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|||++++++++.+..|+.++.......+.|
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  108 (166)
T 3q72_A           75 AYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP  108 (166)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999998764444433

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.85  E-value=3e-20  Score=119.07  Aligned_cols=99  Identities=21%  Similarity=0.411  Sum_probs=85.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+.+||+++|++++|||||++++..      +.+...+.++.+.+  ...+.+++  ..+.+||+||.+.+...+..+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~   85 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   85 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhc
Confidence            3679999999999999999999998      66666667777754  35556666  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|+|++++.+++.+..|+..+..
T Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  114 (179)
T 2y8e_A           86 DSTVAVVVYDITNTNSFHQTSKWIDDVRT  114 (179)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.85  E-value=2.3e-20  Score=121.49  Aligned_cols=100  Identities=22%  Similarity=0.383  Sum_probs=86.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      ..+...+.++.+...  ..+.+.+  ..+.+||++|.+.+...+..+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTR------NEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR   96 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHH------SCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence            4579999999999999999999998      666666677777654  3444544  78999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|||++++.+++.+..|+..+...
T Consensus        97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~  126 (193)
T 2oil_A           97 GAVGALLVFDLTKHQTYAVVERWLKELYDH  126 (193)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=3e-20  Score=118.31  Aligned_cols=98  Identities=18%  Similarity=0.300  Sum_probs=83.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +.+||+++|++++|||||++++..      +.+...+.++.+.... .+..++  ..+.+||+||.+.+...+..+++.+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   75 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVK------GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG   75 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT------CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccC
Confidence            468999999999999999999998      6666666777776543 334444  6799999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      |++++|+|++++++++.+..|+..+..
T Consensus        76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~  102 (172)
T 2erx_A           76 HAFILVYSITSRQSLEELKPIYEQICE  102 (172)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999888877654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.85  E-value=4.3e-20  Score=121.10  Aligned_cols=99  Identities=25%  Similarity=0.391  Sum_probs=85.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+...  ..+...+  ..+.+||+||.+.+...+..+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYR   79 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHT------CCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGG
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhc
Confidence            3578999999999999999999998      666666777777554  4455555  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~  108 (203)
T 1zbd_A           80 GAMGFILMYDITNEESFNAVQDWSTQIKT  108 (203)
T ss_dssp             GCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988765

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.84  E-value=1.3e-20  Score=121.00  Aligned_cols=99  Identities=29%  Similarity=0.524  Sum_probs=84.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+..  ...+.+++  ..+.+||+||.+.+...+..+++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   80 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYR   80 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS------CC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc------CCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhc
Confidence            4679999999999999999999998      66656666777654  45666777  78999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+..+..
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  109 (181)
T 3tw8_B           81 GTHGVIVVYDVTSAESFVNVKRWLHEINQ  109 (181)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998865

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.84  E-value=3.2e-21  Score=127.77  Aligned_cols=101  Identities=22%  Similarity=0.409  Sum_probs=85.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC------------CeEEEEEeCCCCcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS------------NSKLVFWDLGGQPG   80 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~------------~~~~~~~D~~g~~~   80 (128)
                      ...+||+++|++++|||||++++..      +.+...+.+|.+.+.  ..+.++            ...+.+||++|++.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~   96 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER   96 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC------SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc------CCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh
Confidence            4579999999999999999999998      666666677777553  334443            46799999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +...+..+++.+|++++|||++++.+++.+..|+.++....
T Consensus        97 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~  137 (217)
T 2f7s_A           97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA  137 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC
T ss_pred             HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999887654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.84  E-value=1.4e-20  Score=122.52  Aligned_cols=99  Identities=25%  Similarity=0.352  Sum_probs=82.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+.+  ...+.+++  ..+.+||++|++.+...+..+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   92 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR   92 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHH------SCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence            5689999999999999999999998      66665666666643  45566666  68999999999999998999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~  121 (191)
T 2a5j_A           93 GAAGALLVYDITRRETFNHLTSWLEDARQ  121 (191)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988865

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.84  E-value=1.5e-20  Score=124.14  Aligned_cols=100  Identities=25%  Similarity=0.444  Sum_probs=84.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ....+||+++|+++||||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|++.+..++..+++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   98 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP   98 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence            35689999999999999999999999      777777778887654 3444454  78999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHH-HHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDS-KTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~~  119 (128)
                      .+|++++|||++++++|+++ ..|+..+..
T Consensus        99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~  128 (205)
T 1gwn_A           99 DSDAVLICFDISRPETLDSVLKKWKGEIQE  128 (205)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999 678877654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.84  E-value=2.4e-21  Score=125.07  Aligned_cols=99  Identities=25%  Similarity=0.466  Sum_probs=63.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+.+.  ..+.+++  ..+.+||+||++.+...+..+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSE------DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   79 (183)
T ss_dssp             SEEEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHh
Confidence            4579999999999999999999998      666666777777553  4566777  78999999999999888889999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  108 (183)
T 2fu5_C           80 GAMGIMLVYDITNEKSFDNIRNWIRNIEE  108 (183)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988865

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.84  E-value=1.4e-20  Score=124.25  Aligned_cols=100  Identities=21%  Similarity=0.287  Sum_probs=83.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ..+.+||+++|++++|||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|++.+..++..+++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   79 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYR   79 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGT
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcc
Confidence            35789999999999999999999998      667667777877554 3445555  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      ++|++++|||++++++++++. .|+..+..
T Consensus        80 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~  109 (212)
T 2j0v_A           80 GADIFVLAFSLISKASYENVLKKWMPELRR  109 (212)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997 78887754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.84  E-value=2.5e-20  Score=121.56  Aligned_cols=99  Identities=27%  Similarity=0.469  Sum_probs=80.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+.+  ...+.+++  ..+.+||++|.+.+...+..+++
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTD------DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR   97 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc------CCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            4678999999999999999999998      66655666777654  45566666  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++.+++.+..|+..+..
T Consensus        98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~  126 (192)
T 2il1_A           98 SAKGIILVYDITKKETFDDLPKWMKMIDK  126 (192)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999877654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.84  E-value=8.7e-21  Score=133.50  Aligned_cols=107  Identities=32%  Similarity=0.676  Sum_probs=87.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .++.+||+++|.+++|||||++++..      +.+... .+|.+.....+...+..+.+||++|++.+..++..+++.+|
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~------~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  234 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKL------GEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ  234 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCS------SCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhC------CCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            35678999999999999999999987      554433 47888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|||++++++|+.+..|+.+++......+.|
T Consensus       235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p  268 (329)
T 3o47_A          235 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAV  268 (329)
T ss_dssp             EEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE
T ss_pred             EEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe
Confidence            9999999999999999999999998876544433

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.84  E-value=2.9e-20  Score=122.27  Aligned_cols=99  Identities=27%  Similarity=0.503  Sum_probs=86.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+..  ...+.+++  ..+.+||+||.+.+...+..+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSD------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR   79 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence            4579999999999999999999998      66666667777654  34566666  58999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+..+..
T Consensus        80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~  108 (206)
T 2bcg_Y           80 GSHGIIIVYDVTDQESFNGVKMWLQEIDR  108 (206)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=122.82  Aligned_cols=100  Identities=18%  Similarity=0.291  Sum_probs=78.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ..+.+||+++|++++|||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|.+.+..++..+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   90 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTT------NGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT   90 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGT
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcC
Confidence            45789999999999999999999998      666667777777654 3556666  57889999999999998899999


Q ss_pred             ccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      ++|++++|||++++++++++. .|+..+..
T Consensus        91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  120 (201)
T 2q3h_A           91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRC  120 (201)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997 68877754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.84  E-value=1.3e-20  Score=119.84  Aligned_cols=99  Identities=24%  Similarity=0.451  Sum_probs=79.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..+||+++|++++|||||++++..      +.+...+.++.+.+  ...+.+++  ..+.+||+||.+.+...+..+++.
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   75 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG   75 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH------CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             CceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhcc
Confidence            468999999999999999999998      66655666666644  34555555  689999999999999888999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +|++++|+|++++++++.+..|+..+...
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  104 (170)
T 1g16_A           76 AMGIILVYDITDERTFTNIKQWFKTVNEH  104 (170)
T ss_dssp             EEEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999887653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.84  E-value=4e-20  Score=119.28  Aligned_cols=99  Identities=21%  Similarity=0.342  Sum_probs=83.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|++|+|||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||.+.+...+..+++.
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   76 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ   76 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccC
Confidence            4679999999999999999999998      666666677776543 3455666  667899999999999998899999


Q ss_pred             cCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      +|++++|||++++.+++++. .|+..+..
T Consensus        77 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  105 (186)
T 1mh1_A           77 TDVSLICFSLVSPASFENVRAKWYPEVRH  105 (186)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHH
Confidence            99999999999999999997 67777654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.84  E-value=1.8e-20  Score=120.37  Aligned_cols=101  Identities=27%  Similarity=0.449  Sum_probs=73.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEEC-C--eEEEEEeCCCCccchhhHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS-N--SKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      ..+.+||+++|++|+|||||++++..      +.+...+.++.+.+  ...+.++ +  ..+.+||+||++.+...+..+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   78 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVN------DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF   78 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHH------SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CC
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHh------CcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHH
Confidence            35789999999999999999999998      66666666776643  4455555 2  689999999999999999999


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++.+|++++|||++++.+++.+..|+.++...
T Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  110 (182)
T 1ky3_A           79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVH  110 (182)
T ss_dssp             STTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             hhcCCEEEEEEECCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.84  E-value=2.8e-20  Score=121.85  Aligned_cols=103  Identities=18%  Similarity=0.223  Sum_probs=78.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccchh-hHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRS-IWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~   90 (128)
                      ....+||+++|++|||||||++++....    ..+......+.......+.+++  ..+.+||++|++.+.. ++..+++
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   95 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQ----GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ   95 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEE----CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhcc----CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence            3568999999999999999999997511    1111111122333345566776  6788999999988765 7788899


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|||++++++|+++..|+.++...
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~  125 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAG  125 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=1.9e-20  Score=122.04  Aligned_cols=99  Identities=20%  Similarity=0.277  Sum_probs=85.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|++++|||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|++.+...+..+++.
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   89 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   89 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHH------SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence            4679999999999999999999998      666667777776554 3555665  789999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      +|++++|||++++++|+++. .|+..+..
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  118 (194)
T 2atx_A           90 TDVFLICFSVVNPASFQNVKEEWVPELKE  118 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997 68877765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.84  E-value=2.7e-20  Score=122.58  Aligned_cols=102  Identities=21%  Similarity=0.341  Sum_probs=81.2

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHh
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      ....+.+||+++|++|+|||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||.+.+...+..+
T Consensus        25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   98 (204)
T 4gzl_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLS   98 (204)
T ss_dssp             -----CEEEEEEESTTSSHHHHHHHHHH------SCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGG
T ss_pred             hhcCCeEEEEEECcCCCCHHHHHHHHHh------CCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHH
Confidence            3456889999999999999999999998      666667777776543 3445555  567799999999999999999


Q ss_pred             hhccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      ++.+|++++|||++++.+++++. .|+..+..
T Consensus        99 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  130 (204)
T 4gzl_A           99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRH  130 (204)
T ss_dssp             CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999997 67777654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.84  E-value=5.8e-20  Score=118.06  Aligned_cols=91  Identities=21%  Similarity=0.329  Sum_probs=75.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|+++||||||++++..      +.+.. +.+|.+... ..+.+++  ..+.+||++|++.     ..++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~   72 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLT------GSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGW   72 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHH------SCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh------CCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHh
Confidence            4689999999999999999999998      66655 567777543 4556666  6789999999886     467799


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      +|++++|||++++++++.+..|+..+
T Consensus        73 ~d~~ilv~D~~~~~s~~~~~~~~~~i   98 (178)
T 2iwr_A           73 ADAVIFVFSLEDENSFQAVSRLHGQL   98 (178)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            99999999999999999999975544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=4.7e-20  Score=118.46  Aligned_cols=99  Identities=30%  Similarity=0.573  Sum_probs=76.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      .+.+||+++|++++|||||++++..      +.+. ..+.++.+.+..  .+.+++  ..+.+||+||++.+...+..++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~   81 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKD------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYY   81 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCG
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh------CCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHc
Confidence            5789999999999999999999998      5553 345677776543  345666  5899999999999999999999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +.+|++++|+|++++.+++.+..|+..+..
T Consensus        82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~  111 (180)
T 2g6b_A           82 RDAHALLLLYDVTNKASFDNIQAWLTEIHE  111 (180)
T ss_dssp             GGCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.84  E-value=4.5e-20  Score=119.86  Aligned_cols=99  Identities=25%  Similarity=0.393  Sum_probs=85.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+...  ..+...+  ..+.+||++|.+.+...+..+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   93 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR   93 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence            4579999999999999999999998      666666677777554  4445554  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~  122 (189)
T 2gf9_A           94 GAMGFLLMYDIANQESFAAVQDWATQIKT  122 (189)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.84  E-value=4.3e-20  Score=119.86  Aligned_cols=101  Identities=18%  Similarity=0.266  Sum_probs=74.5

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ..+.+||+++|.+|||||||++++..      +.+...+.++.+... ..+.+++  ..+.+||++|.+.+...+..+++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   91 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR   91 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CT
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHc------CCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhC
Confidence            34679999999999999999999998      555556666666543 4555666  56999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|||++++.+++.+..|+..+...
T Consensus        92 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  121 (190)
T 3con_A           92 TGEGFLCVFAINNSKSFADINLYREQIKRV  121 (190)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998887653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.83  E-value=1.1e-19  Score=116.18  Aligned_cols=100  Identities=20%  Similarity=0.157  Sum_probs=74.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCcc--chhhHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPG--LRSIWEKY   88 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~   88 (128)
                      .+.+||+++|++++|||||++++..      ..+... .++.+.+  ...+.+++  ..+.+||++|.+.  +..+...+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   74 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAG------KQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESC   74 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC------C------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHT
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhc------CCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhh
Confidence            4678999999999999999999997      433322 2334432  45566666  5789999999887  56677788


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      ++.+|++++|||++++++|+.+..|+.++....
T Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~  107 (175)
T 2nzj_A           75 LQGGSAYVIVYSIADRGSFESASELRIQLRRTH  107 (175)
T ss_dssp             TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC
T ss_pred             cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999999887653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3.8e-20  Score=123.34  Aligned_cols=99  Identities=24%  Similarity=0.408  Sum_probs=81.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+..  ...+.+++  ..+.+||++|++.+..++..+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   84 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTK------NEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYR   84 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHH------CCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTT
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhc
Confidence            4679999999999999999999998      66666666776643  45566777  68999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++.+++.+..|+.++..
T Consensus        85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~~  113 (223)
T 3cpj_B           85 GAVGALIVYDISKSSSYENCNHWLSELRE  113 (223)
T ss_dssp             TCCEEEEEEC-CCHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.83  E-value=6.4e-20  Score=120.91  Aligned_cols=99  Identities=24%  Similarity=0.463  Sum_probs=84.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...++|+++|++++|||||++++..      ..+...+.++.+..  ...+.+++  ..+.+||+||.+.+...+..+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   91 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR   91 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH------CCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            4679999999999999999999998      66666666776644  45666777  68999999999999988899999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++.+++.+..|+..+..
T Consensus        92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~  120 (213)
T 3cph_A           92 GAMGIILVYDVTDERTFTNIKQWFKTVNE  120 (213)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=6.6e-20  Score=119.60  Aligned_cols=99  Identities=17%  Similarity=0.298  Sum_probs=84.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ...++|+++|+++||||||++++..      +.+...+.++.+.... .+..++  ..+.+||+||.+.+...+..+++.
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   79 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK------GTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK   79 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH------SCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc------CCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhcc
Confidence            5679999999999999999999998      6666677777776543 334444  679999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +|++++|||++++++++.+..|+..+..
T Consensus        80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~  107 (199)
T 2gf0_A           80 GHAFILVFSVTSKQSLEELGPIYKLIVQ  107 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888766644

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.83  E-value=3.8e-20  Score=121.48  Aligned_cols=101  Identities=25%  Similarity=0.443  Sum_probs=85.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      ....+||+++|++++|||||++++..      ..+...+.++.+.+.  ..+.+++  ..+.+||+||++.+...+..++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   78 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY   78 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGG
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHH
Confidence            35789999999999999999999998      666667777777554  3444555  6899999999999988888999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +.+|++++|||++++.+++.+..|+.++...
T Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  109 (207)
T 1vg8_A           79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ  109 (207)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             hCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998887643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=6.9e-21  Score=123.99  Aligned_cols=99  Identities=25%  Similarity=0.406  Sum_probs=84.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+..  ...+...+  ..+.+||++|++.+..++..+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   94 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYAD------DTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR   94 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHH------HTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhc------CCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc
Confidence            4678999999999999999999998      66655666666643  34444443  88999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+..+..
T Consensus        95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  123 (191)
T 3dz8_A           95 GAMGFILMYDITNEESFNAVQDWATQIKT  123 (191)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998865

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.83  E-value=4.4e-20  Score=117.51  Aligned_cols=100  Identities=18%  Similarity=0.215  Sum_probs=71.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC--CcCCcceEEEEEEECC--eEEEEEeCCCCccchh-hHHHhhhc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRS-IWEKYYEE   91 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~   91 (128)
                      .+||+++|++++|||||++++..      ......  ..++.......+.+++  ..+.+||++|.+.+.. ++..+++.
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   75 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGG------LQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQT   75 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC------C------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh------ccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhcc
Confidence            57999999999999999999986      222222  2233444455666776  6788999999998876 67778899


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +|++++|||++++++++.+..|+.++.....
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  106 (169)
T 3q85_A           76 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRP  106 (169)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHST
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999876543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.83  E-value=6e-20  Score=120.56  Aligned_cols=99  Identities=24%  Similarity=0.358  Sum_probs=83.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||++.+...+..+++.
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   96 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD   96 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH------SSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHh------CcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCC
Confidence            4678999999999999999999998      666666777776553 4456666  589999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHH-HHHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDS-KTALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~-~~~l~~~~~  119 (128)
                      +|++++|||++++++++.+ ..|+..+..
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  125 (201)
T 2gco_A           97 TDVILMCFSIDSPDSLENIPEKWTPEVKH  125 (201)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998 567766543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.83  E-value=5.7e-21  Score=125.32  Aligned_cols=100  Identities=17%  Similarity=0.270  Sum_probs=61.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCC--CCCCCCcCCcce--EEEEEEECC----eEEEEEeCCCCccchhhHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPDRIVPTVGL--NIGRIEVSN----SKLVFWDLGGQPGLRSIWE   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~--~~~~~~~~t~~~--~~~~~~~~~----~~~~~~D~~g~~~~~~~~~   86 (128)
                      ...+||+++|++++|||||++++..      +  .+...+.+|.+.  ....+.+++    ..+.+||+||.+.+...+.
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   91 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTS------KGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQIS   91 (208)
T ss_dssp             EEEEEEEEC----------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHh------CCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHH
Confidence            4678999999999999999999998      5  555666777763  345666664    5899999999999999999


Q ss_pred             HhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+++.+|++++|||++++.+++.+..|+..+...
T Consensus        92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  125 (208)
T 2yc2_C           92 QYWNGVYYAILVFDVSSMESFESCKAWFELLKSA  125 (208)
T ss_dssp             TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999988753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.83  E-value=4.8e-20  Score=122.21  Aligned_cols=99  Identities=23%  Similarity=0.393  Sum_probs=65.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|++|+|||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|++.+...+..+++.
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~  105 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFAD------GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPD  105 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------------CCCCCEEEEEEEEETTEEEEEEEEEC---------------C
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhcc
Confidence            4679999999999999999999998      666666667776543 4455666  579999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      +|++++|||++++++|+++. .|+..+..
T Consensus       106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  134 (214)
T 2j1l_A          106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNH  134 (214)
T ss_dssp             EEEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997 68777654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=122.69  Aligned_cols=99  Identities=24%  Similarity=0.377  Sum_probs=77.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+..  ...+.+++  ..+.+||++|.+.+...+..+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   96 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE------NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR   96 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh------CCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence            4679999999999999999999998      55555666666643  45566666  78999999999988888899999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+..|+.++..
T Consensus        97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  125 (200)
T 2o52_A           97 GAAGALLVYDITSRETYNSLAAWLTDART  125 (200)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=8.5e-20  Score=120.31  Aligned_cols=100  Identities=23%  Similarity=0.363  Sum_probs=79.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ....+||+++|++++|||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||++.+...+..+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   95 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSK------DEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYP   95 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHH------SSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCT
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhc------CCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcC
Confidence            45789999999999999999999998      666666677776554 4456666  67999999999999999899999


Q ss_pred             ccCEEEEEEECCCcccHHHH-HHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDS-KTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~~  119 (128)
                      .+|++++|||++++++++.+ ..|+..+..
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  125 (207)
T 2fv8_A           96 DTDVILMCFSVDSPDSLENIPEKWVPEVKH  125 (207)
T ss_dssp             TCCEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 567776654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.82  E-value=1.2e-20  Score=121.41  Aligned_cols=100  Identities=22%  Similarity=0.309  Sum_probs=71.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ..+.+||+++|++++|||||++++..      +.+...+.+|.+.... .+.+++  ..+.+||+||++.+...+..+++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   78 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTS------NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYR   78 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHH------SCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGT
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcc
Confidence            35789999999999999999999998      6666666666654321 222333  56779999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      ++|++++|||++++++++++. .|+..+..
T Consensus        79 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  108 (182)
T 3bwd_D           79 GADVFILAFSLISKASYENVSKKWIPELKH  108 (182)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997 68777654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.82  E-value=2.3e-19  Score=125.18  Aligned_cols=98  Identities=19%  Similarity=0.342  Sum_probs=81.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC-CCCCcCCcceEEEEEEE-CCeEEEEEeCCCCccc-----hhhHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGL-----RSIWEKY   88 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~   88 (128)
                      ..+||+++|++|||||||++++.....    .+ ...+.+|++.....+.+ ++..+.+||+||++.+     ...+..+
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~----~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   77 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYS----AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHI   77 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCC----TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCC----CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence            578999999999999999999987110    11 12466888888887776 4589999999999988     6788889


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      ++++|++++|||++++++++++..|...+
T Consensus        78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l  106 (307)
T 3r7w_A           78 FQMVQVLIHVFDVESTEVLKDIEIFAKAL  106 (307)
T ss_dssp             HTTCSEEEEEEETTCSCHHHHHHHHHHHH
T ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHH
Confidence            99999999999999999999997765444

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.81  E-value=1.5e-20  Score=125.04  Aligned_cols=101  Identities=19%  Similarity=0.425  Sum_probs=85.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEE--EEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      ....+||+++|.+|||||||+++++.      +.+...+.++.+.+...  ..+.+  ..+.+||++|++.+...+..++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   85 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY   85 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHH------HHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHH
Confidence            35789999999999999999999777      55555677788766443  33444  7899999999999999999999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++|++++|||++++.+++.+..|+..+...
T Consensus        86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  116 (221)
T 3gj0_A           86 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV  116 (221)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.81  E-value=5.3e-20  Score=119.64  Aligned_cols=98  Identities=19%  Similarity=0.291  Sum_probs=76.8

Q ss_pred             hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-----------CcCCcceEEEEEE---ECC--eEEEEEeCC
Q 033075           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-----------IVPTVGLNIGRIE---VSN--SKLVFWDLG   76 (128)
Q Consensus        13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-----------~~~t~~~~~~~~~---~~~--~~~~~~D~~   76 (128)
                      .....+||+++|+++||||||++.+..       .+...           +.+|.+.+.....   +++  ..+.+||++
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~   82 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYS-------KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP   82 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHH-------TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECC
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHh-------hccccccccccccccccccceeeeecccccccccCCceEEEEEeCC
Confidence            345789999999999999999976665       22222           3345555433222   222  689999999


Q ss_pred             CCccchhhHHHhhhccCEEEEEEECC------CcccHHHHHHHHHHH
Q 033075           77 GQPGLRSIWEKYYEEAHAVVFVIDAA------CPSRFEDSKTALGKF  117 (128)
Q Consensus        77 g~~~~~~~~~~~~~~~~~~v~v~d~~------~~~s~~~~~~~l~~~  117 (128)
                      |++.+...+..+++++|++++|||++      +.++|+++..|+.++
T Consensus        83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~  129 (198)
T 3t1o_A           83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY  129 (198)
T ss_dssp             SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh
Confidence            99999999999999999999999999      567888888999887

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.81  E-value=4.4e-20  Score=119.70  Aligned_cols=99  Identities=21%  Similarity=0.312  Sum_probs=74.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE-------CCeEEEEEeCCCCccchhhHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-------SNSKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      .+||+++|++|||||||++++..  ..  ..+...+.+|.+.+.....+       ....+.+||++|++.+..++..++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~--~~--~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   77 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMK--TK--KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM   77 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTC--C-------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc--CC--CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHc
Confidence            57999999999999999999987  11  13344566788876554432       247899999999999988889999


Q ss_pred             hccCEEEEEEECCCc-ccHHHHHHHHHHHhc
Q 033075           90 EEAHAVVFVIDAACP-SRFEDSKTALGKFFG  119 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~-~s~~~~~~~l~~~~~  119 (128)
                      ++++++++|||++++ ++++.+..|+.++..
T Consensus        78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~  108 (184)
T 2zej_A           78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKA  108 (184)
T ss_dssp             HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHH
T ss_pred             cCCcEEEEEEeCCcchhHHHHHHHHHHHHHh
Confidence            999999999999997 589999999998764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.81  E-value=4.6e-20  Score=122.23  Aligned_cols=99  Identities=19%  Similarity=0.316  Sum_probs=84.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE--C-C--eEEEEEeCCCCccchhhHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--S-N--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~-~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      ...+||+++|.+|||||||++++..      +.+...+.++.+........  . +  ..+.+||++|.+.+...+..++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   82 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLD------GRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYY   82 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTT------CSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHH
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHh
Confidence            5689999999999999999999998      66666777888766544433  2 2  6799999999999998999999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +.+|++++|||++++.+++.+..|+..+..
T Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  112 (218)
T 4djt_A           83 IGASGAILFFDVTSRITCQNLARWVKEFQA  112 (218)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             hcCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.80  E-value=1.5e-18  Score=115.30  Aligned_cols=102  Identities=16%  Similarity=0.218  Sum_probs=77.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce--EEEEEEECC--eEEEEEeCCCCcc-chhhHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSN--SKLVFWDLGGQPG-LRSIWEKYY   89 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~   89 (128)
                      ...+||+++|+++||||||++++..  .+  ..+...+ ++.+.  ....+.+++  ..+.+||++|.+. +..+...++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~--~~--~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~  109 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAG--VH--DSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM  109 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC--CC--CTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh--CC--CCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHH
Confidence            4579999999999999999999985  11  1222222 22332  335566777  4678999999886 455667778


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      +.++++++|||++++++|+++..|+.++....
T Consensus       110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~  141 (211)
T 2g3y_A          110 QVGDAYLIVYSITDRASFEKASELRIQLRRAR  141 (211)
T ss_dssp             CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999998887543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.80  E-value=1.1e-18  Score=115.25  Aligned_cols=98  Identities=28%  Similarity=0.398  Sum_probs=77.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC---CeEEEEEeCCCCccchh-hHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGLRS-IWEKYY   89 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~   89 (128)
                      +++.+||+++|++++|||||++++..      +.+...+.+ .......+.++   +..+.+||+||++.+.. ++..++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   76 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLT------GQYRDTQTS-ITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFK   76 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHH------SCCCCBCCC-CSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHG
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC------CCcccccCC-cceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHH
Confidence            35789999999999999999999998      666655543 44455557776   57899999999999988 788899


Q ss_pred             hccCEEEEEEECCCcc-cHHHHHHHHHHHh
Q 033075           90 EEAHAVVFVIDAACPS-RFEDSKTALGKFF  118 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~-s~~~~~~~l~~~~  118 (128)
                      +.+|++++|||+++.. ++..+..|+.+++
T Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  106 (214)
T 2fh5_B           77 SSARAVVFVVDSAAFQREVKDVAEFLYQVL  106 (214)
T ss_dssp             GGEEEEEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred             hhCCEEEEEEECCCcCHHHHHHHHHHHHHH
Confidence            9999999999999853 5777777666654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.79  E-value=1.7e-20  Score=122.88  Aligned_cols=100  Identities=29%  Similarity=0.502  Sum_probs=82.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc--eEEEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ...+||+++|++++|||||++++..      +.+...+.++.+  .....+.+++  ..+.+||++|++.+...+..+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~  104 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR  104 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBC------CCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--C
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhh
Confidence            4579999999999999999999987      666656556655  3445666777  67999999999999988889999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+|++++|||++++++++.+..|+..+...
T Consensus       105 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  134 (199)
T 3l0i_B          105 GAHGIIVVYDVTDQESFNNVKQWLQEIDRY  134 (199)
T ss_dssp             CCSEEEECC-CCCSHHHHHHHHHHHHHHSC
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.78  E-value=2.1e-18  Score=112.98  Aligned_cols=97  Identities=27%  Similarity=0.391  Sum_probs=80.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..++++++|++|||||||++++..      ..+...+.++.+..  ...+.+++  ..+.+||++|.+.++..+..+++.
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~   77 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG   77 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHH------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhc
Confidence            468999999999999999999998      66666666776644  45677777  567899999999988888888899


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      ++++++|+|+++..+++++..|+.++.
T Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~  104 (199)
T 2f9l_A           78 AVGALLVYDIAKHLTYENVERWLKELR  104 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            999999999999999999988987764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.78  E-value=1.6e-18  Score=113.28  Aligned_cols=100  Identities=16%  Similarity=0.205  Sum_probs=72.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc--eEEEEEEECC--eEEEEEeCCCCcc-chhhHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPG-LRSIWEKYY   89 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~   89 (128)
                      ...+||+++|++|||||||++++....    ..+...+. +.+  .....+.+++  ..+.+||++|.+. ++.+...++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~   78 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVH----DSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM   78 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHS----CCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCc----CCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhc
Confidence            457999999999999999999998611    12222222 233  2335566777  4678999999776 455667788


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +.+|++++|||++++++|+.+..|+..+..
T Consensus        79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~  108 (192)
T 2cjw_A           79 QVGDAYLIVYSITDRASFEKASELRIQLRR  108 (192)
T ss_dssp             HHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.77  E-value=4.3e-18  Score=111.05  Aligned_cols=97  Identities=26%  Similarity=0.387  Sum_probs=82.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCe--EEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ..++++++|++|||||||++++..      ..++..+.+|.+..  ...+.+++.  .+.+||++|.+++...+..+++.
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~  101 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG  101 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT
T ss_pred             cceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc
Confidence            468999999999999999999998      66666777887754  356677774  56679999999988888889999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      ++++++|+|+++..+++++..|+.++.
T Consensus       102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~  128 (191)
T 1oix_A          102 AVGALLVYDIAKHLTYENVERWLKELR  128 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            999999999999999999988887664

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.64  E-value=2e-20  Score=122.90  Aligned_cols=102  Identities=22%  Similarity=0.355  Sum_probs=82.4

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHh
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKY   88 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~   88 (128)
                      +...+.+||+++|++|+|||||++++..      +.+...+.++.+... ..+.+++  ..+.+||+||++.+...+..+
T Consensus        25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   98 (204)
T 3th5_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLS   98 (204)
Confidence            3446889999999999999999999998      656556666665433 2333444  567799999999999999999


Q ss_pred             hhccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      ++++|++++|||++++++++++. .|+..+..
T Consensus        99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~  130 (204)
T 3th5_A           99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRH  130 (204)
Confidence            99999999999999999999987 67766654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.77  E-value=1.1e-18  Score=114.16  Aligned_cols=98  Identities=17%  Similarity=0.291  Sum_probs=70.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEE---CCeEEEEEeCCCCccchhhH---
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEV---SNSKLVFWDLGGQPGLRSIW---   85 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~---~~~~~~~~D~~g~~~~~~~~---   85 (128)
                      ..+.+||+++|+++||||||++++.+      . +........+..  .....+   ....+.+||++|++.|....   
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   89 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFH------K-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY   89 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHS------C-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHh------c-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence            46789999999999999999998775      1 211211111111  122222   22889999999999987766   


Q ss_pred             HHhhhccCEEEEEEECCCc--ccHHHHHHHHHHHh
Q 033075           86 EKYYEEAHAVVFVIDAACP--SRFEDSKTALGKFF  118 (128)
Q Consensus        86 ~~~~~~~~~~v~v~d~~~~--~s~~~~~~~l~~~~  118 (128)
                      ..+++++|++++|||++++  ++++.+..|+.++.
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~  124 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAY  124 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHH
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHH
Confidence            8899999999999999997  67778888888763

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.77  E-value=4e-18  Score=119.05  Aligned_cols=99  Identities=20%  Similarity=0.318  Sum_probs=83.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      +..++|+++|++++|||||++++..      +.+...+.+|.+... ..+.+++  ..+.+||++|.+.+...+..+++.
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~  226 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ  226 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHH------SCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTT
T ss_pred             cceeEEEEECCCCCChHHHHHHHHh------CCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccC
Confidence            4679999999999999999999998      666667777777554 3455666  456699999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDSK-TALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~-~~l~~~~~  119 (128)
                      +|++++|||++++.+++.+. .|+..+..
T Consensus       227 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  255 (332)
T 2wkq_A          227 TDVFLICFSLVSPASFHHVRAKWYPEVRH  255 (332)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999987 57766654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.76  E-value=1.4e-18  Score=121.81  Aligned_cols=79  Identities=22%  Similarity=0.351  Sum_probs=64.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECCeEEEEEeCCCCccchh---hHHHhhhcc
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEA   92 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~   92 (128)
                      ||+++|++|||||||++++..      +.++.   .+.+|+|.+...+. ...++++||++|+++|+.   .+..|++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~------~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a   73 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFH------NMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSV   73 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHS------CCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTC
T ss_pred             CEEEECCCCCCHHHHHHHHHc------CCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCC
Confidence            689999999999999998776      32222   35688888766542 238899999999999964   468899999


Q ss_pred             CEEEEEEECCCc
Q 033075           93 HAVVFVIDAACP  104 (128)
Q Consensus        93 ~~~v~v~d~~~~  104 (128)
                      +++++|||++++
T Consensus        74 ~~~IlV~Ditd~   85 (331)
T 3r7w_B           74 GALVYVIDSQDE   85 (331)
T ss_dssp             SEEEEECCCSSC
T ss_pred             CEEEEEEECCch
Confidence            999999999998

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.76  E-value=9.7e-19  Score=115.84  Aligned_cols=96  Identities=20%  Similarity=0.347  Sum_probs=77.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      ..+.++|+++|++|+|||||++++..      ..+..   .+.++.+.     .+....+.+||+||++.++..+..+++
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~------~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~   77 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTT------DSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLK   77 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHH------SSCCCBCCCSSCEEET-----TGGGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhc------CCCCCeeeecCceEEE-----EeeCceEEEEECCCcHHHHHHHHHHHH
Confidence            35689999999999999999999998      44332   12232221     124478999999999999998888888


Q ss_pred             c----cCEEEEEEECC-CcccHHHHHHHHHHHhcC
Q 033075           91 E----AHAVVFVIDAA-CPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        91 ~----~~~~v~v~d~~-~~~s~~~~~~~l~~~~~~  120 (128)
                      .    +|++++|+|++ +++++..+..|+.+++..
T Consensus        78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~  112 (218)
T 1nrj_B           78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI  112 (218)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHH
T ss_pred             hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhc
Confidence            7    89999999999 889999999999988754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.1e-18  Score=113.43  Aligned_cols=95  Identities=20%  Similarity=0.351  Sum_probs=73.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.++|+++|++|||||||++++..      ..+..   ...++.+     ..+.+..+.+||+||...+...+..+++.
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~------~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~  114 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTT------DSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHVKLRYKLSDYLKT  114 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH------SSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc------CCCCcccccCCCcee-----eeecCCeEEEEECCCCchHHHHHHHHHHh
Confidence            5678999999999999999999998      33322   1122221     12255789999999999988888877776


Q ss_pred             ----cCEEEEEEECC-CcccHHHHHHHHHHHhcC
Q 033075           92 ----AHAVVFVIDAA-CPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ----~~~~v~v~d~~-~~~s~~~~~~~l~~~~~~  120 (128)
                          +|++++|+|++ +++++..+..|+.++...
T Consensus       115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  148 (193)
T 2ged_A          115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI  148 (193)
T ss_dssp             HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhh
Confidence                89999999999 899999999999888754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.73  E-value=4.9e-18  Score=108.78  Aligned_cols=87  Identities=20%  Similarity=0.284  Sum_probs=70.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCc--ceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTV--GLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .++.++|+++|+++||||||++++..      +.+...+.++.  ......+.+++..+.+||+||++.+...+..+++.
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   78 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRH------SKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQV   78 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHT------TCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC------CccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhh
Confidence            35789999999999999999999998      44444433333  23345677788999999999999998888888899


Q ss_pred             cCEEEEEEECCCccc
Q 033075           92 AHAVVFVIDAACPSR  106 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s  106 (128)
                      +|++++|+|++++..
T Consensus        79 ~d~~i~v~d~~~~~~   93 (178)
T 2lkc_A           79 TDIVILVVAADDGVM   93 (178)
T ss_dssp             CCEEEEEEETTCCCC
T ss_pred             CCEEEEEEECCCCCc
Confidence            999999999988543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.73  E-value=1.4e-16  Score=101.39  Aligned_cols=95  Identities=22%  Similarity=0.253  Sum_probs=68.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccch------hhHHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEK   87 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~   87 (128)
                      +.++++++|++|+|||||++++..      ..+.....+  +.......+.+++..+.+||++|...+.      .+...
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   75 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARD   75 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHC------CSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhC------CCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHH
Confidence            358999999999999999999987      332222223  2333445667778999999999988764      34456


Q ss_pred             hhh--ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           88 YYE--EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        88 ~~~--~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +++  +++++++|+|+++.+   ....|+.++..
T Consensus        76 ~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~  106 (165)
T 2wji_A           76 YIINEKPDLVVNIVDATALE---RNLYLTLQLME  106 (165)
T ss_dssp             HHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH
T ss_pred             HHhcCCCCEEEEEecCCchh---HhHHHHHHHHh
Confidence            665  899999999998754   44457666643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.73  E-value=6.7e-17  Score=103.76  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=70.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CC-CCcCCcceEEEEEEECCeEEEEEeCCCCccchhh-------
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PD-RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-------   84 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------   84 (128)
                      ++..||+++|++|+|||||++++..      ...  .. ....+.+.....+.+++..+.+||++|.+.+...       
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   75 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAG------REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIE   75 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHT------SCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC------CCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHH
Confidence            3568999999999999999999987      221  11 2223444555677788888999999998653211       


Q ss_pred             -HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           85 -WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        85 -~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                       ...+++.+|++++|+|++++.+++ ...|+..+..
T Consensus        76 ~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~  110 (172)
T 2gj8_A           76 RAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIA  110 (172)
T ss_dssp             HHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHH
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH
Confidence             124578999999999999988876 3467766654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.72  E-value=9.2e-17  Score=113.19  Aligned_cols=75  Identities=21%  Similarity=0.370  Sum_probs=66.6

Q ss_pred             cCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECC----------CcccHHHHHHHHHHHhcCcc
Q 033075           53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        53 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~l~~~~~~~~  122 (128)
                      .+|+|+....+.+++..+.+||++|++.++..|..|+++++++|+|||++          +.+++++...|+..+++...
T Consensus       146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~  225 (340)
T 4fid_A          146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF  225 (340)
T ss_dssp             CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred             cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence            45688888888888899999999999999999999999999999999999          78899999999999998766


Q ss_pred             cccCC
Q 033075          123 CKERH  127 (128)
Q Consensus       123 ~~~~~  127 (128)
                      ..+.|
T Consensus       226 ~~~~p  230 (340)
T 4fid_A          226 LKGAV  230 (340)
T ss_dssp             GTTSE
T ss_pred             cCCCe
Confidence            55443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.69  E-value=4.3e-16  Score=100.63  Aligned_cols=96  Identities=23%  Similarity=0.272  Sum_probs=72.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccch------hhHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWE   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~   86 (128)
                      .+.++|+++|++|||||||++++..      ..+.....+  +.......+.+++..+.+||+||...+.      .++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   78 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIAR   78 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC------CCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHH
Confidence            3678999999999999999999987      322222223  3334456677788999999999988774      4556


Q ss_pred             Hhhh--ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           87 KYYE--EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        87 ~~~~--~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .+++  .++++++|+|.++   ++....|+.++..
T Consensus        79 ~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~  110 (188)
T 2wjg_A           79 DYIINEKPDLVVNIVDATA---LERNLYLTLQLME  110 (188)
T ss_dssp             HHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT
T ss_pred             HHHhccCCCEEEEEecchh---HHHHHHHHHHHHh
Confidence            6665  4999999999875   6667778877765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.69  E-value=3.6e-16  Score=98.44  Aligned_cols=84  Identities=24%  Similarity=0.364  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC---CCCcCCcceEEEEEEECCeEEEEEeCCCCcc-------chhhHHH
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP---DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEK   87 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~   87 (128)
                      .||+++|++|+|||||++++..      ..+.   .....+.......+..++..+.+||+||...       +...+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLK------KRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH------CCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC------CCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHH
Confidence            5899999999999999999998      3211   1122233444566777889999999999876       3456677


Q ss_pred             hhhccCEEEEEEECCCcccH
Q 033075           88 YYEEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~~s~  107 (128)
                      +++.+|++++|+|++++.+.
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~   95 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQ   95 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCH
T ss_pred             HHHhCCEEEEEEECCCcccH
Confidence            88999999999999986544

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.67  E-value=1e-15  Score=102.14  Aligned_cols=100  Identities=12%  Similarity=0.157  Sum_probs=70.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC--CCCcCCcceEEEEEEECCeEEEEEeCCCC------ccc---hh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGL---RS   83 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~   83 (128)
                      .+.++|+++|++|||||||++++..      +.+.  .....|...........+..+.+||+||.      +..   ..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSR------ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT  100 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTT------TCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC------CCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH
Confidence            4679999999999999999999988      3332  11123444555566677899999999998      331   12


Q ss_pred             hHHHhhhccCEEEEEEECCCcccHH--HHHHHHHHHhcC
Q 033075           84 IWEKYYEEAHAVVFVIDAACPSRFE--DSKTALGKFFGM  120 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~s~~--~~~~~l~~~~~~  120 (128)
                      .+..++..+|++++|||++++.+++  ....|+..+...
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~  139 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV  139 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh
Confidence            2334568889999999999988764  334677776553

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.67  E-value=4.3e-16  Score=101.19  Aligned_cols=90  Identities=20%  Similarity=0.277  Sum_probs=62.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCC----------Cccc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGG----------QPGL   81 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g----------~~~~   81 (128)
                      ....++|+++|++|+|||||++++..      ..+...+.++.+..  ...... +.++.+||+||          ++.+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLIN------RKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAW   92 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHT------C-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC------CCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHH
Confidence            45689999999999999999999998      44333334444322  122233 34799999999          6677


Q ss_pred             hhhHHHhhhcc---CEEEEEEECCCcccHHHH
Q 033075           82 RSIWEKYYEEA---HAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        82 ~~~~~~~~~~~---~~~v~v~d~~~~~s~~~~  110 (128)
                      ...+..+++.+   |++++|+|++++.++...
T Consensus        93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  124 (195)
T 1svi_A           93 GRMIETYITTREELKAVVQIVDLRHAPSNDDV  124 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH
T ss_pred             HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH
Confidence            77788888877   999999999998887764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.67  E-value=5.2e-17  Score=104.97  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=69.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC-----------CccchhhHH
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSIWE   86 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~   86 (128)
                      +||+++|++|+|||||++++..      +.+...+.++.......+.+.  .+.+||+||           ++.+...+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   73 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG------KKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIV   73 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS------CCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------cCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence            6899999999999999999998      555444445444434444444  789999999           567777888


Q ss_pred             Hhhhc-cCEEEEEEECCCcccHHHH-HHHHH
Q 033075           87 KYYEE-AHAVVFVIDAACPSRFEDS-KTALG  115 (128)
Q Consensus        87 ~~~~~-~~~~v~v~d~~~~~s~~~~-~~~l~  115 (128)
                      .+++. ++++++++++.|.++++++ ..|..
T Consensus        74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~  104 (190)
T 2cxx_A           74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEK  104 (190)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHHHHHHHHHHH
T ss_pred             HHHHhhhccCCEEEEEEcchhhhhHHHhhhc
Confidence            88887 8888888888888888877 55554

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.66  E-value=4.4e-15  Score=103.58  Aligned_cols=103  Identities=24%  Similarity=0.255  Sum_probs=77.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC-CeEEEEEeCCCCccch----------
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLR----------   82 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~----------   82 (128)
                      ..+.-.|+++|.+|||||||+++++.  .+. .........|..........+ +.++.+|||||.....          
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g--~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLG--TKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHT--SCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhC--CCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence            35678999999999999999999998  221 011122223444444566677 8999999999986543          


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .....+++.+|++++|+|+++..++.....|+..+..
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~  120 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP  120 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh
Confidence            5667788999999999999999999888777877665

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.66  E-value=2.4e-15  Score=101.10  Aligned_cols=87  Identities=14%  Similarity=0.074  Sum_probs=63.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC----cCCcceEEEEEEECCeEEEEEeCCCCc----------
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI----VPTVGLNIGRIEVSNSKLVFWDLGGQP----------   79 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~----------   79 (128)
                      ....++|+++|.+|+|||||+++++.      .......    ..|.......+.+++..+.+|||||..          
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g------~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~   99 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILG------RKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS   99 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHT------SCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcC------CCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHH
Confidence            45789999999999999999999998      3332222    234445556777888999999999943          


Q ss_pred             -cchhhHHHhhhccCEEEEEEECCCccc
Q 033075           80 -GLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        80 -~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                       .+...+..+++.+|++++|+|+++...
T Consensus       100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~  127 (239)
T 3lxx_A          100 KEIIRCILLTSPGPHALLLVVPLGRYTE  127 (239)
T ss_dssp             HHHHHHHHHTTTCCSEEEEEEETTCCSS
T ss_pred             HHHHHHHHhcCCCCcEEEEEeeCCCCCH
Confidence             344444555677899999999986544

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.66  E-value=1.8e-15  Score=106.15  Aligned_cols=75  Identities=21%  Similarity=0.406  Sum_probs=65.1

Q ss_pred             cCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECC----------CcccHHHHHHHHHHHhcCcc
Q 033075           53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        53 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~l~~~~~~~~  122 (128)
                      .+|+|+....+.+++..+++||++|++.++..|..|+++++++++|||++          +.++++++..|++++.++..
T Consensus       152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~  231 (327)
T 3ohm_A          152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW  231 (327)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred             CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence            34678888888889999999999999999999999999999999999655          77889999999999998766


Q ss_pred             cccCC
Q 033075          123 CKERH  127 (128)
Q Consensus       123 ~~~~~  127 (128)
                      ..+.|
T Consensus       232 ~~~~~  236 (327)
T 3ohm_A          232 FQNSS  236 (327)
T ss_dssp             GTTCE
T ss_pred             cCCce
Confidence            55443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.64  E-value=5.2e-15  Score=100.94  Aligned_cols=87  Identities=14%  Similarity=0.133  Sum_probs=63.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-CcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhh---
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE---   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---   90 (128)
                      .+.++|+++|.+|+|||||+++++.  .+.  ..... ...|.......+.+++..+.+|||||...+......+++   
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~--~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~  109 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIG--EQV--VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIK  109 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHT--SCC--SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC--CCC--cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHH
Confidence            3689999999999999999999998  211  01122 222444555667788899999999998877544333333   


Q ss_pred             ------ccCEEEEEEECCCcc
Q 033075           91 ------EAHAVVFVIDAACPS  105 (128)
Q Consensus        91 ------~~~~~v~v~d~~~~~  105 (128)
                            .+|++++|+|+++..
T Consensus       110 ~~l~~~~~~~il~V~~~d~~~  130 (262)
T 3def_A          110 GFLVNRTIDVLLYVDRLDVYA  130 (262)
T ss_dssp             HHTTTCEECEEEEEEESSCSC
T ss_pred             HHHhcCCCCEEEEEEcCCCCC
Confidence                  789999999987654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.64  E-value=6e-15  Score=106.04  Aligned_cols=73  Identities=19%  Similarity=0.462  Sum_probs=64.2

Q ss_pred             CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC----------cccHHHHHHHHHHHhcCcccc
Q 033075           55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~l~~~~~~~~~~  124 (128)
                      |+|+....+.+++..+.+||++|++.++..|..|+++++++|+|||+++          .++|+++..|+.++.+.....
T Consensus       204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~  283 (402)
T 1azs_C          204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR  283 (402)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred             eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence            5666666778888999999999999999999999999999999999999          899999999999999875544


Q ss_pred             cCC
Q 033075          125 ERH  127 (128)
Q Consensus       125 ~~~  127 (128)
                      +.|
T Consensus       284 ~~p  286 (402)
T 1azs_C          284 TIS  286 (402)
T ss_dssp             SCC
T ss_pred             CCe
Confidence            443

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.64  E-value=9.6e-16  Score=104.44  Aligned_cols=93  Identities=26%  Similarity=0.218  Sum_probs=69.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceEEEEEEECCeEEEEEeCCCCccchh----------hH
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------IW   85 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~   85 (128)
                      .+|+++|.+|+|||||++++..      .......  ..|.......+.+++..+.+||+||...+..          +.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g------~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~   75 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTN------ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIA   75 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT------TSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHC------CCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHH
Confidence            4899999999999999999987      2211111  2233444567778889999999999876653          55


Q ss_pred             HHhh--hccCEEEEEEECCCcccHHHHHHHHHH
Q 033075           86 EKYY--EEAHAVVFVIDAACPSRFEDSKTALGK  116 (128)
Q Consensus        86 ~~~~--~~~~~~v~v~d~~~~~s~~~~~~~l~~  116 (128)
                      ..++  +.+|++++|+|+++.++...+..++.+
T Consensus        76 ~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~  108 (256)
T 3iby_A           76 AQSVIDLEYDCIINVIDACHLERHLYLTSQLFE  108 (256)
T ss_dssp             HHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT
T ss_pred             HHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHH
Confidence            5666  889999999999997766665555543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.63  E-value=1.4e-14  Score=100.84  Aligned_cols=93  Identities=25%  Similarity=0.249  Sum_probs=66.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC---CCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP---DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSI   84 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~   84 (128)
                      +..+|+++|.+|||||||+++++.      ....   .....|..........++.++.+|||||...        +...
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g------~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~   79 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLG------VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQE   79 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHT------SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC------CceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHH
Confidence            456799999999999999999998      2221   1112233322334556779999999999876        4456


Q ss_pred             HHHhhhccCEEEEEEECCCcccHHHHHHHHHH
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGK  116 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~  116 (128)
                      ...+++.+|++++|+|++++.+..  ..|+.+
T Consensus        80 ~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~  109 (301)
T 1wf3_A           80 VYEALADVNAVVWVVDLRHPPTPE--DELVAR  109 (301)
T ss_dssp             HHHHTSSCSEEEEEEETTSCCCHH--HHHHHH
T ss_pred             HHHHHhcCCEEEEEEECCCCCChH--HHHHHH
Confidence            667889999999999999875544  345433

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.63  E-value=8.3e-16  Score=114.18  Aligned_cols=96  Identities=24%  Similarity=0.340  Sum_probs=70.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE--------EC----CeEEEEEeCCCCccch
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--------VS----NSKLVFWDLGGQPGLR   82 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~--------~~----~~~~~~~D~~g~~~~~   82 (128)
                      ...+||+++|.+|||||||++++..      ..+...+.+|.+.++....        +.    +..+.+||++|++.+.
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~------~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~  112 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIG------ETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH  112 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH
Confidence            4679999999999999999999998      6666677788887765431        22    3789999999999999


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .....+++.+|++++|+|+++.+.   +..|+.++..
T Consensus       113 ~~~~~~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~  146 (535)
T 3dpu_A          113 ASHQFFMTRSSVYMLLLDSRTDSN---KHYWLRHIEK  146 (535)
T ss_dssp             TTCHHHHHSSEEEEEEECGGGGGG---HHHHHHHHHH
T ss_pred             HHHHHHccCCcEEEEEEeCCCchh---HHHHHHHHHH
Confidence            999999999999999999987644   4556666544

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.63  E-value=4.1e-17  Score=111.01  Aligned_cols=103  Identities=12%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             cceeEEEEEcCC---------CCCHHHHHHHHHhhccCCCCCCCCCCcCCc-ceEE--EE----------------EEEC
Q 033075           15 KTEFHVLILGID---------KAGKTTLLEKLKSVYSNVEGLPPDRIVPTV-GLNI--GR----------------IEVS   66 (128)
Q Consensus        15 ~~~~ki~l~G~~---------~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~-~~~~--~~----------------~~~~   66 (128)
                      .+.+||+++|++         +||||||++++...  .. +.+...+.++. +...  ..                +.-.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~--~~-~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP--SA-DEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC--ST-TTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc--cC-CccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            567999999999         99999999999971  00 11222333332 1110  00                1112


Q ss_pred             CeEEEEEe-----------------------CCCCccchhhHHHhhh---------------------ccCEEEEEEECC
Q 033075           67 NSKLVFWD-----------------------LGGQPGLRSIWEKYYE---------------------EAHAVVFVIDAA  102 (128)
Q Consensus        67 ~~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~v~v~d~~  102 (128)
                      ...+.+||                       ++|++.+..++..+++                     ++|++++|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            26799999                       5566666666666666                     799999999999


Q ss_pred             Cc--ccHHHHHHHHHHHhcC
Q 033075          103 CP--SRFEDSKTALGKFFGM  120 (128)
Q Consensus       103 ~~--~s~~~~~~~l~~~~~~  120 (128)
                      ++  ++|+.+..|+.++...
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~  193 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQ  193 (255)
T ss_dssp             C----CHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHH
Confidence            98  9999999999988654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.62  E-value=1.6e-14  Score=98.17  Aligned_cols=98  Identities=11%  Similarity=0.137  Sum_probs=68.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-CCCCCc---CCcceEEEEEEECCeEEEEEeCCCCccch--------
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIV---PTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------   82 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------   82 (128)
                      .+.++|+++|.+|||||||+++++.      .. +.....   .|.......+.+++.++.+|||||...+.        
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~------~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~   93 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILR------KQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYK   93 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHT------SCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhC------CCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHH
Confidence            4679999999999999999999997      22 222222   34445556677888999999999976542        


Q ss_pred             ---hhHHHhhhccCEEEEEEECCCccc-HHHHHHHHHHHh
Q 033075           83 ---SIWEKYYEEAHAVVFVIDAACPSR-FEDSKTALGKFF  118 (128)
Q Consensus        83 ---~~~~~~~~~~~~~v~v~d~~~~~s-~~~~~~~l~~~~  118 (128)
                         .....+++.+|++++|+|+++... ...+..|+.++.
T Consensus        94 ~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~  133 (260)
T 2xtp_A           94 EVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF  133 (260)
T ss_dssp             HHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence               122336788999999999987332 234445666654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.62  E-value=2.3e-15  Score=103.40  Aligned_cols=96  Identities=23%  Similarity=0.259  Sum_probs=68.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCc--CCcceEEEEEEECCeEEEEEeCCCCccch----------h
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV--PTVGLNIGRIEVSNSKLVFWDLGGQPGLR----------S   83 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~   83 (128)
                      ++++|+++|.+|+|||||++++..      ........  .|.......+...+..+.+||+||...+.          .
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g------~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~   75 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTG------SRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ   75 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT------TCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHH
Confidence            468999999999999999999987      22211112  23344455667778899999999987765          2


Q ss_pred             hHHHhh--hccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           84 IWEKYY--EEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        84 ~~~~~~--~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      ....++  +.+|++++|+|+++.++...+..++.+.
T Consensus        76 i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~  111 (274)
T 3i8s_A           76 IACHYILSGDADLLINVVDASNLERNLYLTLQLLEL  111 (274)
T ss_dssp             HHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhc
Confidence            233343  6999999999999876666555555543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.62  E-value=1.6e-15  Score=107.59  Aligned_cols=74  Identities=18%  Similarity=0.362  Sum_probs=64.9

Q ss_pred             CCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC----------cccHHHHHHHHHHHhcCccc
Q 033075           54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKFFGMRIC  123 (128)
Q Consensus        54 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~l~~~~~~~~~  123 (128)
                      +|+|+....+.+++..+.+||++|++.++..|..|+++++++|+|||+++          .++++++..|+..+.+....
T Consensus       179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            46777777888888999999999999999999999999999999999999          56799999999999987655


Q ss_pred             ccCC
Q 033075          124 KERH  127 (128)
Q Consensus       124 ~~~~  127 (128)
                      .+.|
T Consensus       259 ~~~p  262 (353)
T 1cip_A          259 TDTS  262 (353)
T ss_dssp             TTSE
T ss_pred             cCCc
Confidence            4433

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.62  E-value=4.8e-15  Score=101.07  Aligned_cols=96  Identities=23%  Similarity=0.214  Sum_probs=68.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceEEEEEEECCeEEEEEeCCCCccchh------hHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWE   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~   86 (128)
                      .+.++|+++|++|+|||||++++..      .......  ..|.......+...+..+.+||+||...+..      +..
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g------~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~   76 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTG------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIAR   76 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHC------CCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHH
Confidence            4678999999999999999999987      2221111  1233334456666789999999999887653      334


Q ss_pred             Hhh--hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           87 KYY--EEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        87 ~~~--~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .++  ..+|++++|+|+++.++..   .|+.++..
T Consensus        77 ~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~  108 (258)
T 3a1s_A           77 DYLLKGDADLVILVADSVNPEQSL---YLLLEILE  108 (258)
T ss_dssp             HHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHT
T ss_pred             HHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHh
Confidence            555  5899999999999866543   45555544

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.61  E-value=3.8e-15  Score=102.31  Aligned_cols=92  Identities=22%  Similarity=0.252  Sum_probs=63.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccch------hhHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEKY   88 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~   88 (128)
                      .++|+++|++|||||||++++..      ........+  |.......+.. +..+.+||+||...+.      .+...+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g------~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~   75 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG------HNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDY   75 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC------CCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC------CCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHH
Confidence            57999999999999999999987      221111112  22222233333 6789999999998775      455666


Q ss_pred             hh--ccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           89 YE--EAHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        89 ~~--~~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      +.  .+|++++|+|+++.++.   ..|+.++.
T Consensus        76 ~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~  104 (272)
T 3b1v_A           76 LLSQRADSILNVVDATNLERN---LYLTTQLI  104 (272)
T ss_dssp             HHTTCCSEEEEEEEGGGHHHH---HHHHHHHH
T ss_pred             HhcCCCCEEEEEecCCchHhH---HHHHHHHH
Confidence            65  69999999999886544   34555544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.60  E-value=1e-14  Score=106.00  Aligned_cols=95  Identities=24%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc---------chhhHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKY   88 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~   88 (128)
                      .+|+++|.+|||||||+|++......   ...+....|.+.....+.+++..+.+|||+|.+.         +......+
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~---~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   78 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKA---IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM   78 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCc---eecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHH
Confidence            37999999999999999999971100   0111222344444677888899999999999664         34566778


Q ss_pred             hhccCEEEEEEECCCcccHH--HHHHHHH
Q 033075           89 YEEAHAVVFVIDAACPSRFE--DSKTALG  115 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~--~~~~~l~  115 (128)
                      ++++|++++|+|+++.-+..  .+..|+.
T Consensus        79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~  107 (439)
T 1mky_A           79 IREADLVLFVVDGKRGITKEDESLADFLR  107 (439)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHH
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence            89999999999998865543  3444544

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.59  E-value=2.1e-15  Score=110.69  Aligned_cols=100  Identities=15%  Similarity=0.116  Sum_probs=59.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhH--------H
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW--------E   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~   86 (128)
                      +..++|+++|.+|+|||||+|++..  .+. ....+....|.+.....+.+++..+.+|||||.+.+...+        .
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~--~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~  307 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLG--QER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSR  307 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC---------------------CEEEEETTEEEEEEC--------------------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC--CCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHH
Confidence            3568999999999999999999987  110 0011122234444456778889999999999988765443        3


Q ss_pred             HhhhccCEEEEEEECCCcccHH---HHHHHHHHH
Q 033075           87 KYYEEAHAVVFVIDAACPSRFE---DSKTALGKF  117 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~---~~~~~l~~~  117 (128)
                      .+++.+|++++|+|++++.+++   ....|+..+
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l  341 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH  341 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc
Confidence            3678999999999999988875   444555554

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.59  E-value=9.1e-15  Score=100.15  Aligned_cols=95  Identities=23%  Similarity=0.272  Sum_probs=68.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccchh------hHHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEK   87 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~   87 (128)
                      +.++|+++|++|+|||||++++..      ..+.....+  +.......+.+++..+.+||+||...+..      ....
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   75 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTG------LRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARN   75 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHT------TCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHH
Confidence            467999999999999999999987      322212223  33344556777889999999999887755      5556


Q ss_pred             hh--hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           88 YY--EEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        88 ~~--~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++  ..+|++++|+|+++.+   ....|+.++..
T Consensus        76 ~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~  106 (271)
T 3k53_A           76 FILDGNADVIVDIVDSTCLM---RNLFLTLELFE  106 (271)
T ss_dssp             HHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH
T ss_pred             hhhccCCcEEEEEecCCcch---hhHHHHHHHHh
Confidence            66  6899999999998853   33345555443

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.58  E-value=4.8e-15  Score=104.74  Aligned_cols=99  Identities=24%  Similarity=0.319  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCc----cchhhHHHhh---
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQP----GLRSIWEKYY---   89 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~----~~~~~~~~~~---   89 (128)
                      .+|+++|.++||||||++++.......    .+....|...+...+.+++ ..+.+||+||..    .+..+...++   
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i----~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i  234 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKI----ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI  234 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEE----SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCcc----ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH
Confidence            368999999999999999998721111    1223455556666777776 899999999943    3333444444   


Q ss_pred             hccCEEEEEEECCC---cccHHHHHHHHHHHhcC
Q 033075           90 EEAHAVVFVIDAAC---PSRFEDSKTALGKFFGM  120 (128)
Q Consensus        90 ~~~~~~v~v~d~~~---~~s~~~~~~~l~~~~~~  120 (128)
                      +.++++++|+|+++   +++++.+..|+.++...
T Consensus       235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~  268 (342)
T 1lnz_A          235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEY  268 (342)
T ss_dssp             HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHS
T ss_pred             HhccEEEEEEECCcccccChHHHHHHHHHHHHHh
Confidence            46999999999999   88899998888888754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.58  E-value=4.5e-15  Score=96.06  Aligned_cols=97  Identities=22%  Similarity=0.244  Sum_probs=66.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECCeEEEEEeCCC----------Cccch
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSNSKLVFWDLGG----------QPGLR   82 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~D~~g----------~~~~~   82 (128)
                      ....+||+++|++|+|||||++++..      .. .....++.+... ......+.++.+||+||          .+.+.
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFN------RK-IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHT------SC-CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHc------Cc-cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHH
Confidence            45678999999999999999999998      32 122233333221 11112245688999999          56677


Q ss_pred             hhHHHhhhcc---CEEEEEEECCCcccH--HHHHHHHHHH
Q 033075           83 SIWEKYYEEA---HAVVFVIDAACPSRF--EDSKTALGKF  117 (128)
Q Consensus        83 ~~~~~~~~~~---~~~v~v~d~~~~~s~--~~~~~~l~~~  117 (128)
                      ..+..+++.+   +++++|+|.++..+.  ..+..|+...
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~  132 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL  132 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc
Confidence            7777787776   999999999886443  3444566543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.55  E-value=8.8e-15  Score=106.32  Aligned_cols=98  Identities=20%  Similarity=0.225  Sum_probs=63.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc--------cchhhHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP--------GLRSIWEKY   88 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~   88 (128)
                      ..+|+++|.+|||||||++++......   ...+....|.+.....+.+.+..+.+|||+|..        .+...+..+
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~---~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~   79 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERIS---IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   79 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCce---eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence            368999999999999999999871110   011111223333445556667899999999985        566777888


Q ss_pred             hhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++.+|++++|+|+++..++..  .|+.+++.
T Consensus        80 ~~~ad~il~vvD~~~~~~~~d--~~~~~~l~  108 (436)
T 2hjg_A           80 MDEADVIIFMVNGREGVTAAD--EEVAKILY  108 (436)
T ss_dssp             HHHCSEEEEEEETTTCSCHHH--HHHHHHHT
T ss_pred             HHhCCEEEEEEeCCCCCCHHH--HHHHHHHH
Confidence            999999999999998777654  34555443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.55  E-value=1.9e-14  Score=95.36  Aligned_cols=91  Identities=16%  Similarity=0.221  Sum_probs=61.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE-ECCeEEEEEeCCCC----------ccch
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ----------PGLR   82 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~   82 (128)
                      ....++|+++|.+|+|||||+++++.... . .........|.......+. ..+..+.+||+||.          +.+.
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~-~-~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKR-L-AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSS-S-SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCc-c-eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            35678999999999999999999998110 0 0111111223333333333 33588999999994          3445


Q ss_pred             hhHHHhhhc---cCEEEEEEECCCccc
Q 033075           83 SIWEKYYEE---AHAVVFVIDAACPSR  106 (128)
Q Consensus        83 ~~~~~~~~~---~~~~v~v~d~~~~~s  106 (128)
                      .....+++.   +|++++|+|+++.-+
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~  130 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLT  130 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCC
Confidence            566677776   778999999998644

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.55  E-value=1.2e-14  Score=106.74  Aligned_cols=92  Identities=25%  Similarity=0.278  Sum_probs=69.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc-cch--------hhHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWE   86 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~   86 (128)
                      ..++|+++|.+|+|||||+|++...  +. ....+....|.+.....+.+++..+.+|||+|.. .+.        ....
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~--~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~  318 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNE--DR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL  318 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHH--TB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCC--CC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH
Confidence            3489999999999999999999982  11 0111223345555567788889999999999987 543        2335


Q ss_pred             HhhhccCEEEEEEECCCcccHHHH
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                      .+++.+|++++|+|++++.+++..
T Consensus       319 ~~~~~aD~vl~VvD~s~~~s~~~~  342 (482)
T 1xzp_A          319 QEIEKADIVLFVLDASSPLDEEDR  342 (482)
T ss_dssp             HHHHHCSEEEEEEETTSCCCHHHH
T ss_pred             HHhhcccEEEEEecCCCCCCHHHH
Confidence            678999999999999998887664

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.54  E-value=1e-13  Score=94.90  Aligned_cols=99  Identities=12%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh-------HHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-------WEKY   88 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~   88 (128)
                      +.++|+++|.+|+|||||+++++.  .+.. ........+.......+...+..+.+|||||...+...       +..+
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~--~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIG--ERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT--SCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhC--CCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            589999999999999999999997  2110 00111122223333455667799999999998765421       1122


Q ss_pred             --hhccCEEEEEEECCCcccHHH-HHHHHHHHh
Q 033075           89 --YEEAHAVVFVIDAACPSRFED-SKTALGKFF  118 (128)
Q Consensus        89 --~~~~~~~v~v~d~~~~~s~~~-~~~~l~~~~  118 (128)
                        .+.+|++++|+|++.. ++.. ...|+..+.
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~  146 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAIT  146 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHH
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHH
Confidence              2479999999998764 3432 235555553

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.54  E-value=1.6e-14  Score=104.99  Aligned_cols=96  Identities=15%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC---CCCCcCCcceEEEEEEECCeEEEEEeCCCC----------ccch
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLR   82 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~   82 (128)
                      ..+||+++|.+|+|||||+++++.      ...   ......|.+.....+.+++..+.+|||||.          +.|.
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~------~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~  247 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLG------EERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYS  247 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHT------STTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhC------CCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHH
Confidence            458999999999999999999997      222   111122333334567788889999999997          4555


Q ss_pred             hhHH-HhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           83 SIWE-KYYEEAHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        83 ~~~~-~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      .... .+++.+|++++|+|++++.+++.. .|+..+.
T Consensus       248 ~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~  283 (436)
T 2hjg_A          248 VLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAH  283 (436)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH
T ss_pred             HHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHH
Confidence            4444 478999999999999999888776 5666654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.53  E-value=1.2e-14  Score=105.64  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=68.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC---------------------------CCCCcCCcceEEEEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---------------------------PDRIVPTVGLNIGRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~---------------------------~~~~~~t~~~~~~~~~~~   66 (128)
                      .++.++|+++|..++|||||+++|+..........                           ......|++.....+...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            35789999999999999999999986211110000                           001123444444456666


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHH
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT  112 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~  112 (128)
                      +..+.+||+||+++|......+++.+|++++|+|+++ .+|+.+..
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~  127 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS  127 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc
Confidence            7899999999999999888899999999999999998 77775443

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.52  E-value=1.1e-13  Score=98.41  Aligned_cols=84  Identities=20%  Similarity=0.273  Sum_probs=58.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCCCc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP   79 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~   79 (128)
                      .++|+++|.+|+|||||++++......    ..+....|++.+...+.+++                 ..+.+||+||..
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~----v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~   77 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIE----AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV   77 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC----------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCc----ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCc
Confidence            368999999999999999999982111    11122234554444555555                 579999999987


Q ss_pred             cch-------hhHHHhhhccCEEEEEEECCCc
Q 033075           80 GLR-------SIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        80 ~~~-------~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ++.       ..+..+++.+|++++|+|+++.
T Consensus        78 ~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~  109 (363)
T 1jal_A           78 AGASKGEGLGNKFLANIRETDAIGHVVRCFEN  109 (363)
T ss_dssp             TTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred             ccccccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence            653       2334567999999999999973

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.50  E-value=5.4e-13  Score=94.66  Aligned_cols=99  Identities=20%  Similarity=0.259  Sum_probs=73.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC--CCCcCCcceEEEEEEECCeEEEEEeCCCCccch---------h
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR---------S   83 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~   83 (128)
                      ...++++++|.+|||||||++++..      ....  .....|.+.....+...+..+.+||++|.....         .
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  238 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTT------AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQ  238 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCS------SCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC------CCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHH
Confidence            4678999999999999999999987      2211  123345666666676778899999999975321         1


Q ss_pred             hHHHhhhccCEEEEEEECCCcc--cHHHHHHHHHHHhc
Q 033075           84 IWEKYYEEAHAVVFVIDAACPS--RFEDSKTALGKFFG  119 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~--s~~~~~~~l~~~~~  119 (128)
                      ....+...+|++++|+|++++.  +++....|+.++..
T Consensus       239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~  276 (357)
T 2e87_A          239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG  276 (357)
T ss_dssp             HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence            2223445799999999999887  78888888888765

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.50  E-value=1.8e-13  Score=97.43  Aligned_cols=89  Identities=20%  Similarity=0.276  Sum_probs=61.9

Q ss_pred             eeE-EEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEECCeEEEEEeCCCC-c--------cchhh
Q 033075           17 EFH-VLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ-P--------GLRSI   84 (128)
Q Consensus        17 ~~k-i~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~-~--------~~~~~   84 (128)
                      .++ ++++|.+|||||||++++..      ...  .+...+|.+.....+.+++..+.+||++|. .        .+...
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~------~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t  251 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTG------LTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT  251 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHC------C-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHC------CCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH
Confidence            355 99999999999999999997      222  233456666667788888999999999995 2        23333


Q ss_pred             HHHhhhccCEEEEEEECCCcc--cHHHHHH
Q 033075           85 WEKYYEEAHAVVFVIDAACPS--RFEDSKT  112 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~--s~~~~~~  112 (128)
                      + ..+..+|++++|+|++++.  ..+.+..
T Consensus       252 l-~~~~~aD~il~VvD~s~~~~~~~~~~~~  280 (364)
T 2qtf_A          252 L-SEAKYSDALILVIDSTFSENLLIETLQS  280 (364)
T ss_dssp             H-HGGGGSSEEEEEEETTSCHHHHHHHHHH
T ss_pred             H-HHHHhCCEEEEEEECCCCcchHHHHHHH
Confidence            3 3568999999999999876  4444433

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.50  E-value=3.2e-13  Score=97.24  Aligned_cols=94  Identities=17%  Similarity=0.222  Sum_probs=69.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE--------------------------EECC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--------------------------EVSN   67 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~--------------------------~~~~   67 (128)
                      +++.++|+++|.+++|||||++++...      ....    ..+......                          ....
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGI------WTSK----KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   74 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSC------CCCS----SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCc------cccc----ccCccccceeeccccccccceeccccccccccccccccc
Confidence            467899999999999999999999861      1110    001000000                          0111


Q ss_pred             eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      ..+.+||+||++.|......++..+|++++|+|+++..++....+|+..+
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~  124 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL  124 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHH
Confidence            67999999999999998899999999999999999987677777776554

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.49  E-value=7.7e-14  Score=98.98  Aligned_cols=59  Identities=20%  Similarity=0.371  Sum_probs=52.2

Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECC----------CcccHHHHHHHHHHHhcCccccc
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALGKFFGMRICKE  125 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~l~~~~~~~~~~~  125 (128)
                      ...+.+||++|++.++..|..|+++++++++|||++          +.++|+++..|++++.+.....+
T Consensus       182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~  250 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  250 (354)
T ss_dssp             --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence            378999999999999999999999999999999998          78999999999999988754443

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.49  E-value=4.2e-14  Score=103.46  Aligned_cols=99  Identities=21%  Similarity=0.179  Sum_probs=62.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHH--------H
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE--------K   87 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~   87 (128)
                      ..++|+++|.+|+|||||+|++.......   ..+....|.+.....+.+++..+.+|||+|...+...+.        .
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~---v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI---VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSC---CSCCTTCCHHHHHHEEEETTEEEEECC--------------------C
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCccc---ccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhh
Confidence            56899999999999999999998721110   111122233333456778899999999999876544333        3


Q ss_pred             hhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           88 YYEEAHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      +++.+|++++|+|.+++.+.+. ..|+..+.
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~  329 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK  329 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc
Confidence            5688999999999999877655 45665553

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.49  E-value=1.7e-13  Score=100.68  Aligned_cols=93  Identities=16%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------------------------CCCCC--CCcCCcceEEEEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPD--RIVPTVGLNIGRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------------------------~~~~~--~~~~t~~~~~~~~~~~   66 (128)
                      .+..+||+++|.+++|||||+++|+.......                         .....  ....|+......+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            46789999999999999999999976311100                         00000  0112333344556667


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      +..+.+||+||+++|......+++.+|++++|+|+++..+
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~  149 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF  149 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC---
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc
Confidence            7899999999999999999999999999999999998654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.48  E-value=2.2e-13  Score=101.05  Aligned_cols=99  Identities=20%  Similarity=0.141  Sum_probs=73.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCC------------CCCCCC------CCcCCcceEEEEEEECCeEEEEEeCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV------------EGLPPD------RIVPTVGLNIGRIEVSNSKLVFWDLG   76 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~------------~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~   76 (128)
                      .+..+|+++|.+++|||||+++|+......            .....+      ....|+......+.+.+..+.+||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            356799999999999999999996310000            000000      01123334456677888999999999


Q ss_pred             CCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA  113 (128)
Q Consensus        77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~  113 (128)
                      |+.+|...+..+++.+|++++|+|+++..+......|
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~  127 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM  127 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999999999998877766544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.48  E-value=3.5e-14  Score=103.67  Aligned_cols=101  Identities=19%  Similarity=0.199  Sum_probs=66.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC--------CccchhhHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--------QPGLRSIWE   86 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~   86 (128)
                      ....+|+++|.+|||||||++++......   ...+....|.......+.+.+..+.+|||+|        ++.+.....
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~---~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS---IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCc---ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            35679999999999999999999871110   0111111222233444555668999999999        667777888


Q ss_pred             HhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      .+++.+|++++|+|..+.-+.  ...|+.+.+..
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~  129 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTA--ADEEVAKILYR  129 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT
T ss_pred             hhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH
Confidence            889999999999998764333  33455555443

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.47  E-value=7.4e-13  Score=96.20  Aligned_cols=93  Identities=15%  Similarity=0.127  Sum_probs=66.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC----------CCC-------------------CcCCcceEEEEEE
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDR-------------------IVPTVGLNIGRIE   64 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~----------~~~-------------------~~~t~~~~~~~~~   64 (128)
                      .+..++|+++|..++|||||+++|+..........          +..                   ...|+......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            45679999999999999999999987321100000          000                   0112333334455


Q ss_pred             ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075           65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      ..+..+.+||+||+++|......+++.+|++++|+|+++...
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~  142 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ  142 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc
Confidence            567899999999999998888888999999999999998654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.46  E-value=5.8e-13  Score=101.58  Aligned_cols=100  Identities=16%  Similarity=0.081  Sum_probs=73.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CC------CCC------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GL------PPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~------~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      .+..+|+++|..++|||||+++++.......  +.      ..+      ....|+......+.+.+..+.+|||||+.+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            4678999999999999999999985211100  00      000      223455555567777889999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL  114 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l  114 (128)
                      |...+..+++.+|++++|+|+++..+++....|.
T Consensus        90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~  123 (691)
T 1dar_A           90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR  123 (691)
T ss_dssp             CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH
Confidence            9999999999999999999999988887765554

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.46  E-value=7.2e-13  Score=96.41  Aligned_cols=92  Identities=20%  Similarity=0.192  Sum_probs=67.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------------------------CCCCCC--CcCCcceEEEEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPDR--IVPTVGLNIGRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------------------------~~~~~~--~~~t~~~~~~~~~~~   66 (128)
                      .+..++|+++|.+++|||||+++|+.......                         +....+  ...|++.....++.+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            35689999999999999999999965211100                         001111  112344444556667


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      +..+.+||+||+++|......+++.+|++++|+|+++..
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~  132 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE  132 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc
Confidence            789999999999999988888899999999999998853

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=98.83  Aligned_cols=90  Identities=17%  Similarity=0.193  Sum_probs=53.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG   77 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g   77 (128)
                      ....+++++|.+|+|||||++++...  +.  ........|++.+...+.+++                 ..+.+||+||
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~--~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG   95 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNS--QA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG   95 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCC--Cc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence            35689999999999999999999971  11  111223345555555665554                 2599999999


Q ss_pred             Cccchh-------hHHHhhhccCEEEEEEECCCcccHH
Q 033075           78 QPGLRS-------IWEKYYEEAHAVVFVIDAACPSRFE  108 (128)
Q Consensus        78 ~~~~~~-------~~~~~~~~~~~~v~v~d~~~~~s~~  108 (128)
                      ......       .+..+++.+|++++|+|+++.+++.
T Consensus        96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~  133 (396)
T 2ohf_A           96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT  133 (396)
T ss_dssp             -----------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred             cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence            775433       5567789999999999999766543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.45  E-value=1e-12  Score=94.60  Aligned_cols=103  Identities=18%  Similarity=0.068  Sum_probs=72.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCC-----------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      .++.++|+++|.+++|||||++++.....+..  ..+..           ....|+......+...+..+.+||+||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            45789999999999999999999987311110  01110           011133333334555568999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      |......+++.+|++++|+|+++.... ...+|+..+
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~  123 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLA  123 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHH
Confidence            988888889999999999999987653 444555544

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.44  E-value=1.5e-12  Score=89.21  Aligned_cols=101  Identities=17%  Similarity=0.244  Sum_probs=60.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC-------cCCcceEEEEEEE--CC--eEEEEEeCCCCc---
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-------VPTVGLNIGRIEV--SN--SKLVFWDLGGQP---   79 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~---   79 (128)
                      +...++|+++|.+|+|||||+|++..  .+   .+...+       .+|.+.......+  ++  .++.+|||||..   
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~--~~---~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~   79 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFL--TD---LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV   79 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSS--SC---C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCS
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhC--CC---ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccc
Confidence            44679999999999999999999876  21   222222       5666666544444  33  589999999963   


Q ss_pred             ----cchhhH-------HHhhhc-------------cCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           80 ----GLRSIW-------EKYYEE-------------AHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        80 ----~~~~~~-------~~~~~~-------------~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                          .+..+.       ..|+..             +|+++++++.++.........++..+..
T Consensus        80 ~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~  143 (274)
T 3t5d_A           80 DNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE  143 (274)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence                233333       445544             7789999977764332333345555443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.44  E-value=6.2e-13  Score=95.58  Aligned_cols=94  Identities=13%  Similarity=0.029  Sum_probs=66.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCC-----------CCcCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~   83 (128)
                      +.++|+++|..++|||||+++|.....+. ...+..           ....|++.....+...+..+.+||+||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            57899999999999999999998732111 001110           011233322233444568999999999999988


Q ss_pred             hHHHhhhccCEEEEEEECCCcccHHH
Q 033075           84 IWEKYYEEAHAVVFVIDAACPSRFED  109 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~s~~~  109 (128)
                      ....+++.+|++++|+|+++....+.
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt  107 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT  107 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH
Confidence            88888999999999999998655443

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.44  E-value=5.5e-13  Score=96.14  Aligned_cols=89  Identities=20%  Similarity=0.277  Sum_probs=61.5

Q ss_pred             hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEE---------------C--------C
Q 033075           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV---------------S--------N   67 (128)
Q Consensus        13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~---------------~--------~   67 (128)
                      .+++.++|+++|..++|||||++++.....   ..+..+..+  |++..+....+               +        .
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~   80 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWT---DRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFL   80 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCC---CC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccCcccccCCcEEEecccccccccccccccccccccccccCcccccc
Confidence            456789999999999999999999985211   222223223  55433322221               1        1


Q ss_pred             eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ..+.+||+||++.|.......+..+|++++|+|+++.
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g  117 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP  117 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC
Confidence            6799999999998887777777888999999999964

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.1e-12  Score=93.71  Aligned_cols=86  Identities=22%  Similarity=0.204  Sum_probs=66.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc-------hhhHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEKY   88 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~   88 (128)
                      ...+|+++|.|+||||||+|++.+....    ..+....|.......+.+++.++.+.|+||.-.-       .......
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~----v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESE----AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCC----GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCc----ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            3568999999999999999999982222    2234567788888899999999999999994321       1223345


Q ss_pred             hhccCEEEEEEECCCcc
Q 033075           89 YEEAHAVVFVIDAACPS  105 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~  105 (128)
                      .+.||++++|+|++++.
T Consensus       147 i~~ad~il~vvD~~~p~  163 (376)
T 4a9a_A          147 ARTCNLLFIILDVNKPL  163 (376)
T ss_dssp             HHHCSEEEEEEETTSHH
T ss_pred             HHhcCccccccccCccH
Confidence            68999999999999863

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.43  E-value=4.8e-13  Score=93.00  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc-cch--------hhHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWE   86 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~   86 (128)
                      +..+|+++|.+|+|||||+++++......   .......|.......+..++.++.+|||||.. ...        ....
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i---~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI---TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEE---CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccc---cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            45589999999999999999999821100   01111122222334456677999999999987 322        2224


Q ss_pred             HhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      .+++.+|++++|+|.++   +.....|+.+.+
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l  112 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKL  112 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHH
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHH
Confidence            45678999999999877   333334544443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.43  E-value=5.7e-13  Score=97.29  Aligned_cols=99  Identities=14%  Similarity=0.147  Sum_probs=66.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC----------Cccchhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSI   84 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~   84 (128)
                      ...++++++|.+++|||||++++..  .+. .........|.......+..++..+.+|||||          ++.+...
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~--~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLG--EER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHT--STT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhC--CCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH
Confidence            3568999999999999999999996  110 00001111223333356777889999999999          6777666


Q ss_pred             HH-HhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           85 WE-KYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        85 ~~-~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      .. .+++.+|++++|+|+++.-+. ....|+..+
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~  302 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYA  302 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHH
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHH
Confidence            55 478999999999999985443 233444444

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.42  E-value=1.2e-12  Score=94.38  Aligned_cols=88  Identities=22%  Similarity=0.322  Sum_probs=63.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEE---------------C--------Ce
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV---------------S--------NS   68 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~---------------~--------~~   68 (128)
                      +++.++|+++|..++|||||+++|.....   .....+..+  |++..+....+               +        ..
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~   83 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWT---DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVR   83 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCC---C--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCcc---ccChhhhcCCcEEEEeeeeeecccccccccccccccccccCccccccc
Confidence            46789999999999999999999985211   222223223  55444333322               1        16


Q ss_pred             EEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        69 ~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .+.+||+||++.|.......+..+|++++|+|+++.
T Consensus        84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g  119 (410)
T 1kk1_A           84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP  119 (410)
T ss_dssp             EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred             EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence            799999999999887777777889999999999964

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.42  E-value=1e-13  Score=101.59  Aligned_cols=93  Identities=22%  Similarity=0.236  Sum_probs=55.2

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCC-------C------CCCcCCcceEEEEEE
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-------P------DRIVPTVGLNIGRIE   64 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~-------~------~~~~~t~~~~~~~~~   64 (128)
                      +..+..++|+++|..++|||||+++|+.......              +..       .      .....|++.....+.
T Consensus        38 ~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~  117 (467)
T 1r5b_A           38 MYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE  117 (467)
T ss_dssp             HSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE
T ss_pred             hcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence            3456789999999999999999999975211100              000       0      012234444444566


Q ss_pred             ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .++..+.+||+||+++|.......++.+|++++|+|+++.
T Consensus       118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g  157 (467)
T 1r5b_A          118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  157 (467)
T ss_dssp             CSSEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence            6778999999999999988888888999999999999985

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.42  E-value=2.1e-12  Score=95.87  Aligned_cols=92  Identities=18%  Similarity=0.183  Sum_probs=65.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CC----------CCC------CCcCCcceEEEEEEECCeEEEEEeCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GL----------PPD------RIVPTVGLNIGRIEVSNSKLVFWDLG   76 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~----------~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~   76 (128)
                      .+..+|+++|.+++|||||+++++.......  +.          ..+      ....|+......+.+.+..+.+||+|
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            4678999999999999999999986211100  00          000      00112222234566778999999999


Q ss_pred             CCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      |+..|......+++.+|++++|+|+++...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~  120 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVE  120 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence            999998888889999999999999998654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.42  E-value=1.8e-13  Score=99.10  Aligned_cols=96  Identities=15%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC---CCCCcCCcceEEEEEEECCe-EEEEEeCCCCccchhh-----
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---PDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGLRSI-----   84 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-----   84 (128)
                      ....++|+++|..++|||||++++..      ..+   ......|.......+.+.+. .+.+|||||...+..+     
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~------~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~  104 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVG------QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRV  104 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHc------CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHH
Confidence            34678999999999999999999987      222   11223344555567777764 8999999998766433     


Q ss_pred             --HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           85 --WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        85 --~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                        ...+++.+|++++|+|++..+..   ..|+..+.
T Consensus       105 ~~~~~~l~~aD~vllVvD~~~~~~~---~~~l~~l~  137 (423)
T 3qq5_A          105 EKARRVFYRADCGILVTDSAPTPYE---DDVVNLFK  137 (423)
T ss_dssp             HHHHHHHTSCSEEEEECSSSCCHHH---HHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEEeCCChHHH---HHHHHHHH
Confidence              45677899999999998444333   34444443

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.42  E-value=1.1e-12  Score=101.85  Aligned_cols=101  Identities=12%  Similarity=0.024  Sum_probs=72.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCC------CCCC------CCcCCcceEEEEEEEC----------------
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LPPD------RIVPTVGLNIGRIEVS----------------   66 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~------~~~~------~~~~t~~~~~~~~~~~----------------   66 (128)
                      ....+|+++|..++|||||+++++........      .+.+      ....|+......+.+.                
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            45679999999999999999999873111100      1110      1112444333344443                


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG  115 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~  115 (128)
                      +..+.+|||||+.+|...+..+++.+|++|+|+|+++..+++....|..
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~  145 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ  145 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence            4789999999999999999999999999999999999988887765543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.41  E-value=5.1e-13  Score=98.23  Aligned_cols=90  Identities=20%  Similarity=0.213  Sum_probs=63.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.++|+++|..++|||||++++....... .+....+  ...|++.....+.+++..+.+||+||+++|......++..
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~   96 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   96 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence            357899999999999999999998721000 0001111  1234444445666788999999999999998888888999


Q ss_pred             cCEEEEEEECCCc
Q 033075           92 AHAVVFVIDAACP  104 (128)
Q Consensus        92 ~~~~v~v~d~~~~  104 (128)
                      +|++++|+|+++.
T Consensus        97 aD~~ilVvda~~g  109 (482)
T 1wb1_A           97 IDLALIVVDAKEG  109 (482)
T ss_dssp             CCEEEEEEETTTC
T ss_pred             CCEEEEEEecCCC
Confidence            9999999999883

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.41  E-value=6.6e-13  Score=94.72  Aligned_cols=85  Identities=16%  Similarity=0.197  Sum_probs=67.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v   98 (128)
                      +|+++|.+++|||||+++++.            ...|++.....++.++..+.+||+||+++|.......++.+|++++|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV   90 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK------------KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLC   90 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE------------EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHh------------CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence            999999999999999999873            22344555556666778999999999999988777888999999999


Q ss_pred             EECCCcccHHHHHHHHHHH
Q 033075           99 IDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        99 ~d~~~~~s~~~~~~~l~~~  117 (128)
                      +| + ...+...++++..+
T Consensus        91 vd-~-~g~~~qt~e~~~~~  107 (370)
T 2elf_A           91 IP-P-QGLDAHTGECIIAL  107 (370)
T ss_dssp             EC-T-TCCCHHHHHHHHHH
T ss_pred             Ec-C-CCCcHHHHHHHHHH
Confidence            99 4 44455555665543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.41  E-value=1.2e-12  Score=99.92  Aligned_cols=100  Identities=17%  Similarity=0.095  Sum_probs=72.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      .+..+|+++|.+++|||||+++++.......  +      ...+      ....|+......+.+++..+.+|||||+..
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            4678999999999999999999985211110  0      0000      112344444556777889999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL  114 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l  114 (128)
                      +...+..+++.+|++++|+|+++..+......|.
T Consensus        88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~  121 (693)
T 2xex_A           88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR  121 (693)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH
T ss_pred             hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH
Confidence            9988999999999999999999988877665543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.41  E-value=6.2e-13  Score=100.18  Aligned_cols=90  Identities=18%  Similarity=0.175  Sum_probs=66.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC--CCC-----------CCcCCcceEEEEEEECC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL--PPD-----------RIVPTVGLNIGRIEVSN   67 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~--~~~-----------~~~~t~~~~~~~~~~~~   67 (128)
                      ++.++|+++|.+++|||||+++|+.......              +.  +.-           ....|+......+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            5689999999999999999999986211100              00  000           01123333345566677


Q ss_pred             eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .++.+||+||++.|......+++.+|++|+|+|+++.
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g  281 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN  281 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence            8999999999999988888889999999999999873

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.40  E-value=9.5e-13  Score=96.24  Aligned_cols=90  Identities=17%  Similarity=0.231  Sum_probs=67.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------C--CCC-----C------CCcCCcceEEEEEEECC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------G--LPP-----D------RIVPTVGLNIGRIEVSN   67 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~--~~~-----~------~~~~t~~~~~~~~~~~~   67 (128)
                      ++.++|+++|.+++|||||+++|+.......              +  .+.     +      ....|++.....+...+
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            4679999999999999999999986311100              0  000     0      01234444445666677


Q ss_pred             eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ..+.+||+||+++|......+++.+|++++|+|+++.
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g  121 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  121 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence            8999999999999988888899999999999999875

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.40  E-value=8.4e-13  Score=94.98  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE---------------------EECC---eEEEEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI---------------------EVSN---SKLVFW   73 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~---~~~~~~   73 (128)
                      ++|+++|.++||||||++++.......    ......|...+....                     .+++   .++.+|
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~----~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lv   76 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEI----ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMV   76 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcc----cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEE
Confidence            589999999999999999999721111    111112322222221                     1222   579999


Q ss_pred             eCCCCcc----chhhHH---HhhhccCEEEEEEECCCc
Q 033075           74 DLGGQPG----LRSIWE---KYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        74 D~~g~~~----~~~~~~---~~~~~~~~~v~v~d~~~~  104 (128)
                      |+||...    .+.+..   .+++.+|++++|+|+++.
T Consensus        77 DtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           77 DVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             ECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            9999753    222333   346899999999999986

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.39  E-value=1.5e-12  Score=85.42  Aligned_cols=97  Identities=22%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCCCcc---------
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQPG---------   80 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~---------   80 (128)
                      +...+..+++++|++|||||||++++..      ..+...+.++.|..  ...+.+++ .+.+||+||...         
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g------~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~   93 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTN------QKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKR   93 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCC------C-------------CCEEEEEEET-TEEEEECCCCC------CCHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhC------CCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHH
Confidence            4456778999999999999999999987      33222333444432  12333333 678999999742         


Q ss_pred             -chhhHHHhh---hccCEEEEEEECCCcccHH--HHHHHHH
Q 033075           81 -LRSIWEKYY---EEAHAVVFVIDAACPSRFE--DSKTALG  115 (128)
Q Consensus        81 -~~~~~~~~~---~~~~~~v~v~d~~~~~s~~--~~~~~l~  115 (128)
                       +......++   +.++++++++|++++.+..  ++..|+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~  134 (210)
T 1pui_A           94 KWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV  134 (210)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH
Confidence             233333444   4689999999999876654  3444554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.39  E-value=2.3e-12  Score=93.75  Aligned_cols=88  Identities=24%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC---CCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh--------
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------   84 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------   84 (128)
                      ..++++++|++|||||||++++..      ...   .+....|.......+.+++..+.+||++|.......        
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g------~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~  252 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILN------KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY  252 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT------STTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred             cCceEEEECCCCCCHHHHHHHHhC------CcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence            348999999999999999999987      211   111122233334567788899999999997433221        


Q ss_pred             ----HHHhhhccCEEEEEEECCCcccHHH
Q 033075           85 ----WEKYYEEAHAVVFVIDAACPSRFED  109 (128)
Q Consensus        85 ----~~~~~~~~~~~v~v~d~~~~~s~~~  109 (128)
                          ...+++.+|++++++|+++..+.+.
T Consensus       253 ~~~~~~~~i~~ad~vllv~d~~~~~~~~~  281 (439)
T 1mky_A          253 SNYRVVDSIEKADVVVIVLDATQGITRQD  281 (439)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEeCCCCCCHHH
Confidence                1346788999999999998766654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.39  E-value=3.3e-13  Score=101.33  Aligned_cols=95  Identities=20%  Similarity=0.243  Sum_probs=66.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE----------------ECCeEEEEEeCCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQ   78 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~   78 (128)
                      .+..+|+++|..++|||||+++++.....  ...+.....+++.......                +....+.+|||||+
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh   80 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH   80 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence            45789999999999999999999872111  1111122334554333221                11136999999999


Q ss_pred             ccchhhHHHhhhccCEEEEEEECCC---cccHHHHH
Q 033075           79 PGLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSK  111 (128)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~  111 (128)
                      +.|..++..+++.+|++++|+|+++   +.+++.+.
T Consensus        81 e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~  116 (594)
T 1g7s_A           81 EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN  116 (594)
T ss_dssp             SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH
Confidence            9999888888899999999999999   55555543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.36  E-value=1.8e-14  Score=106.86  Aligned_cols=91  Identities=22%  Similarity=0.235  Sum_probs=66.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEE-CCeEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ++..+|+++|.+++|||||+++|...      .+.....+  |.......+.. .+..+.+|||||++.|..++..+++.
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~------~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~   75 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKT------QVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQV   75 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHH------HHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC------CcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHcc
Confidence            35678999999999999999999872      11111111  11111223333 34689999999999999998889999


Q ss_pred             cCEEEEEEECCCcccHHHHH
Q 033075           92 AHAVVFVIDAACPSRFEDSK  111 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~  111 (128)
                      +|++++|+|+++....+...
T Consensus        76 aD~vILVVDa~dg~~~qt~e   95 (537)
T 3izy_P           76 TDIVILVVAADDGVMKQTVE   95 (537)
T ss_dssp             BSSCEEECBSSSCCCHHHHH
T ss_pred             CCEEEEEEECCCCccHHHHH
Confidence            99999999999977665543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.36  E-value=7.8e-12  Score=95.58  Aligned_cols=99  Identities=17%  Similarity=0.016  Sum_probs=71.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------CCcCCcceEEEEEEECC-------eEEEEE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSN-------SKLVFW   73 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~-------~~~~~~   73 (128)
                      .+..+|+++|..++|||||+++++.......  +      ...+      ....|+......+.+.+       ..+.+|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            4578999999999999999999976211100  0      0000      11123333344556665       899999


Q ss_pred             eCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075           74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA  113 (128)
Q Consensus        74 D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~  113 (128)
                      ||||+.+|...+..+++.+|++|+|+|+++..+......|
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~  127 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW  127 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence            9999999998899999999999999999987765554433

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.36  E-value=1e-11  Score=93.24  Aligned_cols=103  Identities=17%  Similarity=0.139  Sum_probs=69.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-CCCCCC----------cCCcceEEEEEEEC---C--eEEEEEeCCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRI----------VPTVGLNIGRIEVS---N--SKLVFWDLGGQ   78 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~-~~~~~~----------~~t~~~~~~~~~~~---~--~~~~~~D~~g~   78 (128)
                      .+..+|+++|..++|||||+++++........ ......          ..|+......+.+.   +  ..+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            35679999999999999999999863211100 000000          01221112233332   2  78999999999


Q ss_pred             ccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      .+|...+..+++.+|++++|+|+++..+.+....|....
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~  122 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV  122 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence            999998899999999999999999998888877776544

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.35  E-value=4.6e-12  Score=94.48  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=66.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE---E--------------------------------
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN---I--------------------------------   60 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~---~--------------------------------   60 (128)
                      ...+|+++|.+|+|||||+|+++.  .+..+........|....   .                                
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg--~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLE--QEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHT--SCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC--CccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            468999999999999999999998  211000001111111000   0                                


Q ss_pred             --EEEEECC---eEEEEEeCCCCcc-----------chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           61 --GRIEVSN---SKLVFWDLGGQPG-----------LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        61 --~~~~~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                        ..+.+.+   .++.+|||||...           +......++..+|++++|+|+++....+....|+..+..
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~  216 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG  216 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh
Confidence              0011111   3689999999764           556677788999999999999887666677777777654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.35  E-value=5.9e-12  Score=94.63  Aligned_cols=102  Identities=13%  Similarity=0.160  Sum_probs=66.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-CCCCCC------cCCcceE----EEEEEEC-----CeEEEEEeCCCCc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRI------VPTVGLN----IGRIEVS-----NSKLVFWDLGGQP   79 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~-~~~~~~------~~t~~~~----~~~~~~~-----~~~~~~~D~~g~~   79 (128)
                      +..+|+++|..++|||||+++++........ ......      ....|.+    ...+.+.     ++.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            4578999999999999999999873211100 000011      1112222    2334343     2789999999999


Q ss_pred             cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      +|...+..+++.+|++++|+|+++..+++....|....
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~  120 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM  120 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999988888777776544

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.34  E-value=1.4e-11  Score=84.89  Aligned_cols=50  Identities=16%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             eEEEEEeCCCCc-------------cchhhHHHhhhccCEEE-EEEECCCcccHHHHHHHHHHH
Q 033075           68 SKLVFWDLGGQP-------------GLRSIWEKYYEEAHAVV-FVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        68 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~v-~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      .++.+|||||..             .+..+...+++.++.++ +|+|+++.-+......++..+
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~  188 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV  188 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh
Confidence            689999999953             34567778888888776 789998755444443455544

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.32  E-value=1.8e-11  Score=87.21  Aligned_cols=82  Identities=21%  Similarity=0.292  Sum_probs=56.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC---------------------CeEEEEEeCC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---------------------NSKLVFWDLG   76 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~~~~~D~~   76 (128)
                      ++++++|.+|+|||||++++.......    .+....|+..+.....+.                     +..+.+||+|
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v----~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtp   77 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALA----ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIA   77 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTC----SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcc----cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECC
Confidence            679999999999999999998832111    111122333333333332                     3579999999


Q ss_pred             CCccc-------hhhHHHhhhccCEEEEEEECCC
Q 033075           77 GQPGL-------RSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        77 g~~~~-------~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                      |....       ......+++.+|++++|+|+++
T Consensus        78 Gl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           78 GLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             SCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            97653       2234456799999999999986

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.29  E-value=3.6e-13  Score=99.22  Aligned_cols=86  Identities=26%  Similarity=0.273  Sum_probs=62.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      ++..+|+++|..++|||||++++....... +..+   ..|.......+.+++..+.+||+||++.|..++...+..+|+
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~-~e~~---GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~   77 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVAS-GEAG---GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDI   77 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSB-TTBC---CCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCcc-ccCC---CeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCE
Confidence            467899999999999999999998721110 1000   011111112334456789999999999999888888899999


Q ss_pred             EEEEEECCCc
Q 033075           95 VVFVIDAACP  104 (128)
Q Consensus        95 ~v~v~d~~~~  104 (128)
                      +++|+|+++.
T Consensus        78 aILVVda~~g   87 (501)
T 1zo1_I           78 VVLVVAADDG   87 (501)
T ss_dssp             EEEEEETTTB
T ss_pred             EEEEeecccC
Confidence            9999999883

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.27  E-value=5.7e-12  Score=89.62  Aligned_cols=99  Identities=19%  Similarity=0.300  Sum_probs=53.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--------cCCcceEEEEEE--ECC--eEEEEEeCCCC---
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--------VPTVGLNIGRIE--VSN--SKLVFWDLGGQ---   78 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--------~~t~~~~~~~~~--~~~--~~~~~~D~~g~---   78 (128)
                      +...++|+++|++|+|||||++++...     ..+...+        .+|++.......  ..+  ..+.+||++|.   
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L~~~-----~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~  108 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSLFLT-----DLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA  108 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHHTTC-----CC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHhCC-----CCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence            356789999999999999999998761     1111111        244444433332  234  47999999998   


Q ss_pred             ----ccchhhHH-------HhhhccCEE-----------EEEEECCC-cccHHHHH-HHHHHH
Q 033075           79 ----PGLRSIWE-------KYYEEAHAV-----------VFVIDAAC-PSRFEDSK-TALGKF  117 (128)
Q Consensus        79 ----~~~~~~~~-------~~~~~~~~~-----------v~v~d~~~-~~s~~~~~-~~l~~~  117 (128)
                          +.+..++.       .|++.++++           +++|++++ ..++..+. .|+..+
T Consensus       109 ~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l  171 (361)
T 2qag_A          109 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI  171 (361)
T ss_dssp             -------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh
Confidence                66666665       666665443           35555554 45555554 345444

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.27  E-value=2.8e-11  Score=92.41  Aligned_cols=49  Identities=18%  Similarity=0.278  Sum_probs=38.4

Q ss_pred             EEEEEeCCCCcc---chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           69 KLVFWDLGGQPG---LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        69 ~~~~~D~~g~~~---~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      .+.+|||||...   .......+++.+|++++|+|++++.+..+...|...+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence            589999999554   3455667889999999999999988887776555444

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.25  E-value=3.4e-11  Score=83.62  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=30.0

Q ss_pred             CeEEEEEeCCCCcc-------------chhhHHHhhhccCEEEEEEECCCc
Q 033075           67 NSKLVFWDLGGQPG-------------LRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        67 ~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      +.++.+|||||...             +......+++.+|++++|+|.++.
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence            36799999999753             455677888999999999997543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.25  E-value=1.6e-10  Score=87.90  Aligned_cols=102  Identities=19%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCC--CC-----CCCCCC-------cCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV--EG-----LPPDRI-------VPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~--~~-----~~~~~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      .+..+++++|++++|||||+++++......  .+     .....+       ..+.......+...+..+.+||+||+.+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            467799999999999999999998532210  00     001111       1233334456666779999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      |......+++.+|++++|+|.++....... .++..+
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~  122 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVA  122 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHH
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHH
Confidence            999889999999999999998876554433 444444

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.23  E-value=2e-11  Score=96.87  Aligned_cols=93  Identities=18%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCC-----C--CCcCCcceE----EEEEEECCeEEEEEeCCCCccc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPP-----D--RIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~~~-----~--~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      .++.++|+++|..++|||||+++|.....+. ...+.     +  ....+.|.+    ...+...+..+.+||+||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3567999999999999999999998731110 00000     0  111222322    2234445589999999999999


Q ss_pred             hhhHHHhhhccCEEEEEEECCCccc
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      ......+++.+|++|+|+|+++...
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~  397 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPM  397 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCc
Confidence            8888888999999999999998643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.23  E-value=8.7e-11  Score=83.34  Aligned_cols=38  Identities=21%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             eEEEEEeCCCCccc-------------hhhHHHhhhccCEEEEEEECCCcc
Q 033075           68 SKLVFWDLGGQPGL-------------RSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        68 ~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      ..+.+||+||...+             ..+...|++++|++++|+|.++.+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~  186 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD  186 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC
Confidence            57899999997765             667788899999999999876644

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.21  E-value=2.6e-11  Score=86.26  Aligned_cols=73  Identities=21%  Similarity=0.439  Sum_probs=58.1

Q ss_pred             CCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC----------cccHHHHHHHHHHHhcCccc
Q 033075           54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKFFGMRIC  123 (128)
Q Consensus        54 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~l~~~~~~~~~  123 (128)
                      +|+|+....+.+++..+.+||++|++.++..|..++++++++|||||+++          ..+++++..|+..+.+....
T Consensus       187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~  266 (362)
T 1zcb_A          187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF  266 (362)
T ss_dssp             CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence            36777777888889999999999999999999999999999999999999          78999999999999987654


Q ss_pred             ccC
Q 033075          124 KER  126 (128)
Q Consensus       124 ~~~  126 (128)
                      .+.
T Consensus       267 ~~~  269 (362)
T 1zcb_A          267 SNV  269 (362)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.19  E-value=2.2e-12  Score=96.90  Aligned_cols=91  Identities=18%  Similarity=0.173  Sum_probs=47.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------------------------CCCCC--CCcCCcceEEEEEEEC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPD--RIVPTVGLNIGRIEVS   66 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------------------------~~~~~--~~~~t~~~~~~~~~~~   66 (128)
                      .+..++|+++|.+++|||||+++|+.......                         +....  ....|+......+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            45678999999999999999999965211110                         00000  0112333333445555


Q ss_pred             CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      +..+.+||+||++.|......+++.+|++|+|+|+++.
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g  291 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN  291 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            68899999999999988777788999999999999863

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.19  E-value=1.8e-10  Score=82.64  Aligned_cols=86  Identities=20%  Similarity=0.328  Sum_probs=60.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG   77 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g   77 (128)
                      ++..+++++|++|||||||++.+.....   .........|+..+...+.+.+                 ..+.+||++|
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~---a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG   94 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVL---GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG   94 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTT---TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCc---ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence            3467999999999999999999998111   0111122234445555666665                 4689999999


Q ss_pred             Cc-------cchhhHHHhhhccCEEEEEEECCC
Q 033075           78 QP-------GLRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        78 ~~-------~~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                      ..       .+...+...++.+|++++|+|+.+
T Consensus        95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            32       244455667789999999999875

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.18  E-value=2.3e-10  Score=82.71  Aligned_cols=97  Identities=22%  Similarity=0.306  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc-------chhhHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY   89 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~   89 (128)
                      -.++++|++|||||||++++.......    .+....|...+...+.+++ ..+.+||++|...       +........
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i----~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~  233 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKI----APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI  233 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEE----CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccc----cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence            458999999999999999998732111    1122334445555676765 8899999999632       111222334


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ..++.++.++|++ ++.+.++..|..++..
T Consensus       234 era~~lL~vvDls-~~~~~~ls~g~~el~~  262 (416)
T 1udx_A          234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGA  262 (416)
T ss_dssp             TSSSEEEEEEETT-SCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhEEeCCc-cCCHHHHHHHHHHHHH
Confidence            6799999999998 6777788777776654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.05  E-value=2.3e-09  Score=79.93  Aligned_cols=98  Identities=19%  Similarity=0.144  Sum_probs=71.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------C-----CCC------CCCcCCcceEEEEEEECCeEEEEEeCCC
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------G-----LPP------DRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------~-----~~~------~~~~~t~~~~~~~~~~~~~~~~~~D~~g   77 (128)
                      +.-+|+|+|..++|||||..+|+.....+.       +     ...      .+..-|+......+.+++..+.|.||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            567899999999999999999975221100       0     000      0111233333567888999999999999


Q ss_pred             CccchhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA  113 (128)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~  113 (128)
                      +.+|.......++-+|++|+|+|+...-.-+....|
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~  145 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM  145 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH
Confidence            999999999999999999999999987766655544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.00  E-value=3.3e-09  Score=75.07  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=22.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+|+++|.++||||||++++..
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g   53 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVG   53 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhC
Confidence            467999999999999999999987

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.87  E-value=4.2e-09  Score=73.15  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=21.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.-.++|+++|++|+|||||++++..
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhC
Confidence            34578999999999999999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.87  E-value=4.5e-09  Score=76.03  Aligned_cols=67  Identities=24%  Similarity=0.297  Sum_probs=34.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEE--CC--eEEEEEeCCCCccc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEV--SN--SKLVFWDLGGQPGL   81 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~   81 (128)
                      .-.++|+++|++|+|||||++++........+..  .....++.+.....+.+  .+  ..+++||++|....
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~  101 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA  101 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence            4567899999999999999999997211100100  00011233222111111  22  47899999997643

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.78  E-value=5.8e-09  Score=79.09  Aligned_cols=91  Identities=19%  Similarity=0.126  Sum_probs=66.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCC--CCC-----CCC-------cCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPP-----DRI-------VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~--~~~-----~~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~   83 (128)
                      -+|+++|...+|||||..+|+.....+..  ...     ..+       --|+......+.+++..+.+.||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            47899999999999999999864332110  000     000       0122223345677889999999999999999


Q ss_pred             hHHHhhhccCEEEEEEECCCcccHH
Q 033075           84 IWEKYYEEAHAVVFVIDAACPSRFE  108 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~s~~  108 (128)
                      .....++-+|++|+|+|+...-.-+
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~q  107 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQ  107 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSH
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHH
Confidence            9999999999999999998754433

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.75  E-value=4e-08  Score=69.53  Aligned_cols=39  Identities=8%  Similarity=0.083  Sum_probs=25.3

Q ss_pred             CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccH
Q 033075           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~  107 (128)
                      .+..+.++|++|.....   ......+|++++|+|.++.+..
T Consensus       165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~  203 (349)
T 2www_A          165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDEL  203 (349)
T ss_dssp             TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----
T ss_pred             CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhH
Confidence            45788999999964322   3345789999999998875543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.70  E-value=2.1e-07  Score=71.40  Aligned_cols=95  Identities=17%  Similarity=0.040  Sum_probs=64.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhcc------CCCC--CCCC--CCcC----CcceEEEEEEEC-------CeEEEEEe
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYS------NVEG--LPPD--RIVP----TVGLNIGRIEVS-------NSKLVFWD   74 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~------~~~~--~~~~--~~~~----t~~~~~~~~~~~-------~~~~~~~D   74 (128)
                      +.-+|+++|...+|||||..+|+....      +..+  ...+  ...-    |+-....++.+.       ++.+.+.|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            456899999999999999999975321      1100  0000  0011    222222344443       47899999


Q ss_pred             CCCCccchhhHHHhhhccCEEEEEEECCCcccHHHH
Q 033075           75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        75 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                      |||+-+|.......++-+|++|+|+|+...-..+..
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~  127 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE  127 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH
Confidence            999999999999999999999999999986654443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.64  E-value=9.1e-08  Score=67.77  Aligned_cols=39  Identities=8%  Similarity=-0.003  Sum_probs=28.6

Q ss_pred             CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccH
Q 033075           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~  107 (128)
                      .+..+.++||+|....   .......+|++++|+|....+.+
T Consensus       170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~  208 (355)
T 3p32_A          170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQL  208 (355)
T ss_dssp             TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTT
T ss_pred             CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccH
Confidence            4578999999995432   23345889999999998765543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.62  E-value=3.4e-09  Score=73.58  Aligned_cols=79  Identities=10%  Similarity=-0.058  Sum_probs=62.7

Q ss_pred             HHHHHHHhhccCCCCCCC-CCCcCCcceEEEEEEE-CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc-cHH
Q 033075           32 TLLEKLKSVYSNVEGLPP-DRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFE  108 (128)
Q Consensus        32 sl~~~l~~~~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~  108 (128)
                      +|+.++..      +.+. ..+.||+|..+. ... .+..+.+||+  +++++.++..+++++|++++|||+++++ ++.
T Consensus        32 sl~~~~~~------~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~  102 (301)
T 1u0l_A           32 ERILCKLR------GKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTY  102 (301)
T ss_dssp             CEEEEEEC------GGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHH
T ss_pred             cEEEEEEc------ccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHH
Confidence            45566655      6777 778899996654 323 2247899999  8889899999999999999999999987 799


Q ss_pred             HHHHHHHHHhc
Q 033075          109 DSKTALGKFFG  119 (128)
Q Consensus       109 ~~~~~l~~~~~  119 (128)
                      .+..|+.++..
T Consensus       103 ~l~~~l~~~~~  113 (301)
T 1u0l_A          103 IIDKFLVLAEK  113 (301)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.56  E-value=6e-08  Score=68.40  Aligned_cols=38  Identities=8%  Similarity=-0.054  Sum_probs=26.3

Q ss_pred             CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      .+.++.++||||.......   ..+.+|++++|+|.++.+.
T Consensus       147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~  184 (341)
T 2p67_A          147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD  184 (341)
T ss_dssp             TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-----
T ss_pred             cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH
Confidence            4578999999997654332   4589999999999876543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.54  E-value=7.4e-07  Score=68.72  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+|+++|..++|||||++.+..
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g   73 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVG   73 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            567999999999999999999987

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.52  E-value=1.2e-07  Score=65.33  Aligned_cols=59  Identities=29%  Similarity=0.401  Sum_probs=34.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   79 (128)
                      ...++++++|.+|+|||||+|++...  +. .........|...+  .+.. +..+.++||||-.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~--~~-~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKK--NI-AKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS--CC-C------------C--CEEE-TTTEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcC--ce-eecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence            45689999999999999999999871  11 00001111122211  1222 3468999999954

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.50  E-value=2.5e-07  Score=65.20  Aligned_cols=37  Identities=3%  Similarity=0.014  Sum_probs=26.4

Q ss_pred             CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      .+.++.++||+|...-..   .....+|.+++++|.+..+
T Consensus       146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~  182 (337)
T 2qm8_A          146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGD  182 (337)
T ss_dssp             TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--
T ss_pred             CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcc
Confidence            568899999999764322   2347899999999876543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.48  E-value=3.8e-08  Score=67.11  Aligned_cols=54  Identities=24%  Similarity=0.384  Sum_probs=33.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECCeEEEEEeCCCCc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQP   79 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~   79 (128)
                      ++++++|.+|+|||||+|++..      .... ...++.|...  ..+.. +..+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~------~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKG------KRAS-SVGAQPGITKGIQWFSL-ENGVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT------TCC-----------CCSCEEEC-TTSCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhc------cccc-ccCCCCCCccceEEEEe-CCCEEEEECCCcc
Confidence            6999999999999999999997      2111 1112222111  11222 3578999999954

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.37  E-value=9.4e-07  Score=59.53  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+..-++++|.+||||||+++.+..
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~   36 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGR   36 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHH
Confidence            4567889999999999999999974

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.36  E-value=7.5e-07  Score=66.96  Aligned_cols=66  Identities=24%  Similarity=0.272  Sum_probs=41.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE---ECCeEEEEEeCCCCcc
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE---VSNSKLVFWDLGGQPG   80 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~D~~g~~~   80 (128)
                      ..+..+|+++|.+++|||||+|++.+..... .........|.+.......   ..+..+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            4567899999999999999999999721100 0111111234443221111   2357899999999543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.28  E-value=7.6e-06  Score=60.55  Aligned_cols=91  Identities=19%  Similarity=0.301  Sum_probs=51.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-----CCCcCC-----------cceEEEE----------------
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-----DRIVPT-----------VGLNIGR----------------   62 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-----~~~~~t-----------~~~~~~~----------------   62 (128)
                      .+...|+++|.+||||||+++.+....... +...     +.+.+.           .+.....                
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~  177 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE  177 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence            345689999999999999999998522110 0000     000000           0111111                


Q ss_pred             -EEECCeEEEEEeCCCCccchh-hH---HHh--hhccCEEEEEEECCCccc
Q 033075           63 -IEVSNSKLVFWDLGGQPGLRS-IW---EKY--YEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        63 -~~~~~~~~~~~D~~g~~~~~~-~~---~~~--~~~~~~~v~v~d~~~~~s  106 (128)
                       ....++.+.++||||...... ..   ...  ...+|.+++|+|.+....
T Consensus       178 ~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~  228 (504)
T 2j37_W          178 KFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA  228 (504)
T ss_dssp             HHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT
T ss_pred             HHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc
Confidence             011457899999999764321 11   111  237899999999987543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.23  E-value=1.6e-06  Score=61.73  Aligned_cols=83  Identities=16%  Similarity=0.179  Sum_probs=45.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEECCeEEEEEeCCCCccch--------hhH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIW   85 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~   85 (128)
                      +..+++++|.+|+|||||+|++...........  ......|..  ...+.+. ..+.++||||-....        ...
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLE-SGATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            346899999999999999999998311000000  001112222  1222222 348999999954221        122


Q ss_pred             HHhh--hccCEEEEEEEC
Q 033075           86 EKYY--EEAHAVVFVIDA  101 (128)
Q Consensus        86 ~~~~--~~~~~~v~v~d~  101 (128)
                      ..++  +..+.++++++.
T Consensus       238 ~~~~~~~~i~~~~~~l~~  255 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNE  255 (369)
T ss_dssp             HHHSCSSCCCCEEEEECT
T ss_pred             HHHhcccccCceEEEEcC
Confidence            2222  456777777765

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.22  E-value=1.2e-07  Score=69.47  Aligned_cols=96  Identities=23%  Similarity=0.326  Sum_probs=55.3

Q ss_pred             hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE--EE-CC-eEEEEEeCCCCcc--chhhH-
Q 033075           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EV-SN-SKLVFWDLGGQPG--LRSIW-   85 (128)
Q Consensus        13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~-~~~~~~D~~g~~~--~~~~~-   85 (128)
                      .......|+++|.+|+||||+.+++......       ...++.+++...+  .. +. ....+||..|.+.  .+..+ 
T Consensus        35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~-------~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~  107 (469)
T 1bif_A           35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNF-------IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCA  107 (469)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHHhc-------cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHH
Confidence            3456789999999999999999999862111       0111221110000  00 11 2345788888632  23332 


Q ss_pred             -------HHhhhccCEEEEEEECCCcccHHHHHHHHHH
Q 033075           86 -------EKYYEEAHAVVFVIDAACPSRFEDSKTALGK  116 (128)
Q Consensus        86 -------~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~  116 (128)
                             ..++....+.++|+|.++. +.+....|+..
T Consensus       108 ~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~  144 (469)
T 1bif_A          108 LAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNF  144 (469)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHH
Confidence                   4556667888999999987 45555555443

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.18  E-value=1e-06  Score=58.22  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=28.6

Q ss_pred             CCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHH
Q 033075           75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK  116 (128)
Q Consensus        75 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~  116 (128)
                      .+|+..++.+|..|++++|++|||+|.+|++.++ +++.+.+
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~e  149 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSH  149 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHH
Confidence            3478899999999999999999999999987765 7676633

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.13  E-value=3.4e-05  Score=55.95  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..++++++|++|+|||||++.+..
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhC
Confidence            446799999999999999999987

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.98  E-value=4.9e-06  Score=54.73  Aligned_cols=26  Identities=31%  Similarity=0.333  Sum_probs=23.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..+..+|+++|.+|||||||++++..
T Consensus        35 ~~~~~~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           35 KHGVVAFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            35678999999999999999999997

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.92  E-value=4.8e-06  Score=59.28  Aligned_cols=25  Identities=20%  Similarity=0.414  Sum_probs=22.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +..+++++|.+|+|||||+|++...
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            3568999999999999999999983

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.91  E-value=7.1e-06  Score=56.07  Aligned_cols=24  Identities=29%  Similarity=0.625  Sum_probs=22.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .++++++|++|+|||||++.+.+.
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            478999999999999999999884

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.88  E-value=1.5e-05  Score=53.34  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|||||||++.+..
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            3579999999999999999987

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.87  E-value=4.1e-06  Score=57.85  Aligned_cols=40  Identities=18%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             CCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075           75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG  115 (128)
Q Consensus        75 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~  115 (128)
                      .+|+..++.+|..|++++|++|||+|.+|++.++ +++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~  233 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFS  233 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHH
Confidence            4678899999999999999999999999998765 555444

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.83  E-value=2e-05  Score=52.32  Aligned_cols=21  Identities=43%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999987

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.82  E-value=2.5e-05  Score=52.47  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|||||||++.+..
T Consensus        25 e~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4678999999999999999997

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.81  E-value=1.4e-05  Score=51.25  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +++++|++|+|||||++.+...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999873

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.81  E-value=2.4e-05  Score=53.66  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999999987

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.79  E-value=2.6e-05  Score=53.02  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        34 ~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999987

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.78  E-value=2.8e-05  Score=52.66  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999987

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.77  E-value=3.8e-05  Score=52.38  Aligned_cols=21  Identities=48%  Similarity=0.632  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        39 ~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999987

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.76  E-value=3.1e-05  Score=51.94  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999987

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.76  E-value=2.9e-05  Score=52.91  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        52 i~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHc
Confidence            578999999999999999987

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.74  E-value=2e-05  Score=50.45  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      --++++|++|||||||++.+...
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.72  E-value=3.5e-05  Score=51.75  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|||||||++.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999987

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.72  E-value=5.1e-05  Score=51.14  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            688999999999999999987

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.72  E-value=3.3e-05  Score=50.56  Aligned_cols=28  Identities=29%  Similarity=0.332  Sum_probs=24.2

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...+..+++++|.+|+|||||++++..
T Consensus        25 ~~~~~~~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           25 LRESGTVAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             HHHHTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hcccCceEEEEEcCCCCCHHHHHHHHHH
Confidence            3345678999999999999999999987

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.71  E-value=4.2e-05  Score=50.54  Aligned_cols=21  Identities=38%  Similarity=0.482  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999987

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.71  E-value=3.5e-05  Score=52.69  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|||||||++.+..
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3679999999999999999987

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.71  E-value=2.2e-05  Score=51.03  Aligned_cols=24  Identities=42%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      -.++++|++|||||||++.+...+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            368999999999999999998743

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.69  E-value=5.6e-05  Score=51.27  Aligned_cols=21  Identities=33%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999987

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.69  E-value=5.9e-05  Score=53.57  Aligned_cols=21  Identities=43%  Similarity=0.612  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCchHHHHHHHHhc
Confidence            478999999999999999997

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.68  E-value=5e-05  Score=50.59  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            678999999999999999987

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.67  E-value=5.1e-05  Score=51.66  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        35 ~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            578999999999999999987

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.66  E-value=0.00012  Score=53.43  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+-.=|.++|++++|||+|+|.++..
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            45667889999999999999999863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.66  E-value=5.8e-05  Score=51.81  Aligned_cols=21  Identities=43%  Similarity=0.699  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            578999999999999999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.65  E-value=3e-05  Score=50.14  Aligned_cols=23  Identities=30%  Similarity=0.315  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      --++++|++|||||||++.+...
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999999874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.65  E-value=2.9e-05  Score=54.04  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|||||||++.+..
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchHHHHHHHHHc
Confidence            334789999999999999999987

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.65  E-value=0.00011  Score=53.22  Aligned_cols=25  Identities=20%  Similarity=0.527  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ....++++|++|||||||+|.+.+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            4458999999999999999999983

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.64  E-value=6.3e-05  Score=53.53  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        56 i~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHhc
Confidence            578999999999999999987

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.64  E-value=5.4e-05  Score=51.14  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            578999999999999999987

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.64  E-value=8.9e-05  Score=52.90  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcHHHHHHHHHHc
Confidence            478999999999999999997

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.63  E-value=4.6e-05  Score=51.06  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|||||||++.+..
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999987

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.62  E-value=3.5e-05  Score=50.31  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      --++++|++|||||||++.+....
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            357899999999999999998743

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.62  E-value=3.4e-05  Score=49.39  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.++++|++||||||+++.+..
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999987

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.59  E-value=8.1e-05  Score=53.27  Aligned_cols=21  Identities=33%  Similarity=0.562  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        31 ~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHHc
Confidence            478999999999999999997

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.59  E-value=4.1e-05  Score=50.73  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      --++++|++|||||||++.+....
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999998743

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.58  E-value=8.4e-05  Score=52.71  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        43 ~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            578999999999999999997

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.58  E-value=8.6e-05  Score=52.75  Aligned_cols=21  Identities=43%  Similarity=0.479  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHHC
Confidence            578999999999999999997

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.58  E-value=4.4e-05  Score=50.40  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=22.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      +--.++++|++|||||||++.+....
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34468999999999999999998743

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.58  E-value=6.3e-05  Score=50.75  Aligned_cols=21  Identities=33%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999987

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.57  E-value=5.6e-05  Score=49.37  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=22.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++...++++|++|||||||++.+...
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.57  E-value=9.1e-05  Score=52.68  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCchHHHHHHHHhc
Confidence            578999999999999999997

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.55  E-value=0.0001  Score=52.63  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        39 ~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            578999999999999999997

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.54  E-value=5.6e-05  Score=49.37  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      .--++++|++|||||||++.+....
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3468899999999999999998743

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.54  E-value=6.3e-05  Score=48.98  Aligned_cols=26  Identities=35%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++...++++|++|||||||++.+...
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999774

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.53  E-value=5.6e-05  Score=49.44  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .--++++|++||||||+++.+...
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            345889999999999999999873

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.53  E-value=6e-05  Score=48.77  Aligned_cols=21  Identities=43%  Similarity=0.586  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      |+|+||+|||||||++.++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.52  E-value=6.3e-05  Score=47.38  Aligned_cols=27  Identities=30%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      ++---++++|+.|+|||||++.+....
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            344468999999999999999999843

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.52  E-value=6.8e-05  Score=50.16  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLK   38 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~   38 (128)
                      +...++++|++||||||+++.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999998

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.51  E-value=0.00012  Score=49.85  Aligned_cols=21  Identities=48%  Similarity=0.748  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            678999999999999999987

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.51  E-value=7.2e-05  Score=53.01  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            578999999999999999997

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.49  E-value=7.2e-05  Score=50.59  Aligned_cols=21  Identities=38%  Similarity=0.580  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999987

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.48  E-value=5.6e-05  Score=47.95  Aligned_cols=19  Identities=32%  Similarity=0.534  Sum_probs=16.8

Q ss_pred             eEEEEEcCCCCCHHHHHHH
Q 033075           18 FHVLILGIDKAGKTTLLEK   36 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~   36 (128)
                      --++++|++|||||||++.
T Consensus        10 ei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHH
Confidence            3578999999999999994

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.48  E-value=8e-05  Score=52.68  Aligned_cols=21  Identities=43%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        28 ~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCccHHHHHHHHHc
Confidence            578999999999999999997

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.48  E-value=7.5e-05  Score=47.01  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..|+++|++||||||+++.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999976

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.48  E-value=7.4e-05  Score=47.86  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++||||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999976

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.46  E-value=0.00011  Score=46.66  Aligned_cols=26  Identities=19%  Similarity=0.147  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+.-.++++|++|+|||||++.+...
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999873

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.46  E-value=7.8e-05  Score=48.19  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ...++++|++||||||+++.+...
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999999874

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.45  E-value=8.4e-05  Score=48.31  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ..-|+++|++||||||+++.+...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            345899999999999999999873

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.44  E-value=8.6e-05  Score=46.53  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|++.|++||||||+++.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.43  E-value=9.4e-05  Score=47.94  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.-.++++|++||||||+++.+..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999999999976

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.41  E-value=0.00012  Score=47.40  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=21.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.-.|+++|++||||||+.+.+..
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3455899999999999999999976

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.41  E-value=0.00011  Score=45.99  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 033075           18 FHVLILGIDKAGKTTLLEKL   37 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l   37 (128)
                      .-|++.|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35889999999999999999

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.40  E-value=0.00012  Score=50.48  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            678999999999999999987

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.40  E-value=0.0002  Score=53.74  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            334789999999999999999987

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.40  E-value=0.00011  Score=46.40  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..|++.|++||||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3588999999999999999986

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.39  E-value=0.00012  Score=47.75  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++|++.|++||||||+++.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999965

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.38  E-value=0.00012  Score=46.30  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -|++.|++||||||+.+.+..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999987

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.37  E-value=0.00015  Score=45.73  Aligned_cols=24  Identities=13%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...++++|++||||||+++.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345689999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.37  E-value=0.00013  Score=47.66  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999965

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.37  E-value=0.00014  Score=47.67  Aligned_cols=22  Identities=32%  Similarity=0.288  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..|+++|++||||||+++.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.37  E-value=0.00026  Score=44.62  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+...+.....-.+++.|++|+|||++++.+..
T Consensus        33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence            333444444556789999999999999999987

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.36  E-value=0.00015  Score=47.61  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|+++|.+||||||+.+.+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.36  E-value=9.8e-05  Score=48.55  Aligned_cols=22  Identities=32%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .++++|++|+|||||++.+...
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999873

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.36  E-value=0.00012  Score=47.32  Aligned_cols=23  Identities=17%  Similarity=0.452  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|+++|.+||||||+++.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44799999999999999999976

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.36  E-value=0.00012  Score=47.46  Aligned_cols=23  Identities=43%  Similarity=0.622  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhc
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      .++++|++|+|||||++.+....
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            47899999999999999998743

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.35  E-value=3.2e-05  Score=49.41  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999987

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.34  E-value=0.00013  Score=49.78  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999987

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.34  E-value=0.0002  Score=46.40  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=21.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+..-|+++|++||||||+++.+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4556789999999999999999876

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.33  E-value=0.00016  Score=46.84  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+|+++|.+||||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4689999999999999999865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.32  E-value=0.00014  Score=49.38  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++.-.++++|++||||||+++.+...
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHh
Confidence            44457899999999999999999873

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.32  E-value=0.00017  Score=51.18  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.++++|++|||||||+|.+..
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHC
T ss_pred             CEEEEECCCCccHHHHHHHHhc
Confidence            3689999999999999999997

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.32  E-value=0.00028  Score=53.03  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITR  391 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhh
Confidence            34789999999999999999987

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.32  E-value=0.00017  Score=46.42  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .|++.|.+||||||+++.+...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999999873

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.32  E-value=0.00018  Score=48.10  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++...++++|++||||||+++.+..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4556799999999999999999976

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.32  E-value=0.00014  Score=50.23  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-.++++|++|||||||++.+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCcHHHHHHHhcc
Confidence            34679999999999999999987

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.32  E-value=0.00014  Score=49.37  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|||||||++.+..
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.30  E-value=0.0002  Score=45.73  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|++.|.+||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.30  E-value=0.0016  Score=47.49  Aligned_cols=23  Identities=39%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-|+++|++|+||||++..+..
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHH
Confidence            56789999999999999998875

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.30  E-value=0.00021  Score=45.75  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=22.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++...|+++|.+||||||+.+.+...
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999998763

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.30  E-value=0.00018  Score=45.87  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .|++.|++||||||+++.+...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.30  E-value=0.00022  Score=45.34  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|+++|.+||||||+.+.+..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999975

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.29  E-value=0.0002  Score=45.61  Aligned_cols=22  Identities=23%  Similarity=0.225  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..|++.|++||||||+++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.29  E-value=0.0002  Score=47.01  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|+++|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999976

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.29  E-value=8.6e-05  Score=49.15  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=16.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHH-h
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLK-S   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~-~   39 (128)
                      +---++++|++||||||+++.+. .
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~   50 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEK   50 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            34468999999999999999999 5

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.29  E-value=0.0002  Score=53.94  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            344789999999999999999987

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.29  E-value=0.00017  Score=50.13  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++.=.++|+|++|+|||||++.+...
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            45567899999999999999999873

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.28  E-value=0.0002  Score=45.54  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|+++|++||||||+.+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            44789999999999999999976

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.28  E-value=0.00023  Score=47.69  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+..+|+++|++||||||+++.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4667899999999999999999975

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.27  E-value=0.00024  Score=45.94  Aligned_cols=25  Identities=40%  Similarity=0.472  Sum_probs=21.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .....|+++|.+||||||+.+.+..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4556899999999999999999976

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.27  E-value=0.00016  Score=47.33  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --++++|++|+|||||++.+..
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999976

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.27  E-value=0.0002  Score=46.95  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..|+++|+|||||+|.+.++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999976

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.25  E-value=0.00022  Score=46.24  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.|+++|++||||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.25  E-value=0.00017  Score=54.20  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|+|||||++.+..
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            344789999999999999999887

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.24  E-value=0.00022  Score=53.90  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~G   67 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSG   67 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHS
T ss_pred             eEEEECCCCChHHHHHHHHhC
Confidence            599999999999999999997

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.24  E-value=0.00027  Score=45.10  Aligned_cols=25  Identities=28%  Similarity=0.474  Sum_probs=21.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+...|+++|.+||||||+++.+..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4566799999999999999999865

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.23  E-value=0.00022  Score=46.58  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+|++.|.+||||||+++.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999976

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.23  E-value=0.00027  Score=45.67  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..|++.|.+||||||+++.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999977

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.22  E-value=0.00023  Score=46.90  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|++.|.+||||||+++.+..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999975

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.22  E-value=0.00023  Score=50.56  Aligned_cols=25  Identities=28%  Similarity=0.608  Sum_probs=22.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++..||+++|.++|||||+++++.-
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i   55 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRI   55 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHH
Confidence            4678999999999999999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.22  E-value=0.00017  Score=51.05  Aligned_cols=25  Identities=40%  Similarity=0.627  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      .-+++++|++|+|||||++.+...+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998743

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.21  E-value=0.00028  Score=49.18  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+..-++|+|++|||||||++.+...
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            45678999999999999999998763

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.21  E-value=0.00032  Score=49.22  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.-.++++|++|||||||++.+..
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344789999999999999999988

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.21  E-value=0.00028  Score=45.83  Aligned_cols=25  Identities=36%  Similarity=0.537  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +...|+++|++||||||+++.+...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4567899999999999999999873

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.20  E-value=0.0003  Score=44.87  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|++.|.+||||||+.+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.20  E-value=0.0003  Score=45.29  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ...|++.|.+||||||+++.+...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.20  E-value=0.00021  Score=49.46  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 033075           17 EFHVLILGIDKAGKTTLLEKLK   38 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~   38 (128)
                      .--++++|++|||||||+|.+.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3467999999999999999998

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.20  E-value=0.0003  Score=45.44  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..+...|++.|.+||||||+.+.+..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556799999999999999999875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.19  E-value=0.00034  Score=43.99  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=25.2

Q ss_pred             HHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus         8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +...+.....-.+++.|++|+|||++++.+...
T Consensus        34 l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           34 AIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             HHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            333444445667899999999999999999873

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.19  E-value=0.00029  Score=45.07  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|++.|.+||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.19  E-value=0.00023  Score=46.77  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|+++|++||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999976

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.17  E-value=0.0003  Score=45.13  Aligned_cols=23  Identities=35%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|++.|.+||||||+.+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999976

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.17  E-value=0.00025  Score=44.83  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +|+++|++||||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.16  E-value=0.00028  Score=45.08  Aligned_cols=23  Identities=35%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-++++|.+|+|||||++.+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHH
Confidence            34578999999999999999986

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.16  E-value=0.00033  Score=49.66  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++.-.++++|++|||||||++.+..
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHh
Confidence            3455799999999999999999987

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.15  E-value=0.00039  Score=49.32  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.-.++++|++||||||+++.+..
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3444899999999999999999976

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.15  E-value=0.00034  Score=43.71  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999976

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.13  E-value=0.00038  Score=44.75  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=21.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+...|+++|.+||||||+.+.|..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999876

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.13  E-value=0.00028  Score=57.67  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++-=+++++|++|||||||++.+..
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhc
Confidence            3445899999999999999999998

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.13  E-value=0.00037  Score=45.24  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|++.|.+||||||+++.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999976

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.12  E-value=0.00037  Score=45.18  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|++.|.+||||||+++.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999976

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.10  E-value=0.00039  Score=46.79  Aligned_cols=23  Identities=30%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHH
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLK   38 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~   38 (128)
                      +...|+|+|++||||||+++.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            44689999999999999999998

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.10  E-value=0.00039  Score=47.75  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...-|++.|++||||||+++.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999976

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.10  E-value=0.00045  Score=47.63  Aligned_cols=25  Identities=16%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+...|+++|++|||||||++.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998765

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.09  E-value=0.0004  Score=45.81  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|++.|.+||||||+++.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999976

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.09  E-value=0.003  Score=43.62  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-++++|.+|+||||++..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34678889999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.09  E-value=0.00038  Score=44.14  Aligned_cols=23  Identities=39%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|+++|.+|+||||+++.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999999975

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.07  E-value=0.0004  Score=51.79  Aligned_cols=22  Identities=36%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -++++|++|||||||++.+...
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999999883

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.07  E-value=0.00061  Score=46.46  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|+|||||++.+..
T Consensus        46 GvlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            399999999999999999987

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.07  E-value=0.0005  Score=51.29  Aligned_cols=22  Identities=32%  Similarity=0.373  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .++++|++|+|||||++.+...
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999873

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.07  E-value=0.00049  Score=43.76  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|++.|.+||||||+.+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.07  E-value=0.00038  Score=46.93  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++||||||+.+.+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999976

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.06  E-value=0.00044  Score=52.07  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=.++++|++|+|||||++.+..
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34789999999999999999987

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.06  E-value=0.00028  Score=43.83  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-.++++|++|+|||+|++.+..
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999987

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.06  E-value=0.00037  Score=48.39  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .--++++|++||||||+++.+...
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            447889999999999999999764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.06  E-value=0.00045  Score=44.03  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.06  E-value=0.00047  Score=47.77  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+..-++|+|++|||||||++.+...
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999774

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.05  E-value=0.00052  Score=44.48  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=21.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+..-++++|++||||||+++.+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.05  E-value=0.00039  Score=48.20  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .--++++|++||||||+++.+...
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            346889999999999999999774

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.04  E-value=0.00053  Score=47.99  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +.+-++++|++||||||+++.+...
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998663

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.03  E-value=0.00041  Score=44.02  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++|++|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999866

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.03  E-value=0.00044  Score=46.29  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999987

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.00052  Score=51.93  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~G  125 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAG  125 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            589999999999999999998

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.02  E-value=0.00057  Score=45.29  Aligned_cols=24  Identities=33%  Similarity=0.392  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|+++|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999976

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.00  E-value=0.00068  Score=48.30  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++.-.++++|++||||||+++.+...
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34456999999999999999999873

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.00  E-value=0.00052  Score=43.03  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|++.|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.00  E-value=0.00059  Score=46.06  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999999876

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.99  E-value=0.00061  Score=43.37  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-++++|.+|+||||++.++..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999876

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.99  E-value=0.00011  Score=51.21  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-.++++|++|||||||+|.+..
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcc
Confidence            34789999999999999999986

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.99  E-value=0.00047  Score=48.35  Aligned_cols=26  Identities=27%  Similarity=0.562  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+.--++++|++||||||+++.+...
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999773

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.99  E-value=0.00038  Score=46.82  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ....|+++|++||||||+.+.+...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999998763

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.99  E-value=0.00037  Score=44.09  Aligned_cols=23  Identities=26%  Similarity=0.160  Sum_probs=16.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|++.|.+||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999975

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.99  E-value=0.00066  Score=44.35  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|++.|.+||||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.98  E-value=0.00042  Score=49.73  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            579999999999999999987

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.98  E-value=0.00053  Score=45.37  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=19.0

Q ss_pred             eeE-EEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFH-VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~k-i~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.| |+++|+|||||+|.+..+..
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            344 45689999999999999976

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.97  E-value=0.00054  Score=43.53  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999866

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.97  E-value=0.0007  Score=42.87  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...|+++|.+||||||+++.+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999976

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.97  E-value=0.00016  Score=46.92  Aligned_cols=21  Identities=52%  Similarity=0.732  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -|++.|.+||||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999976

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.97  E-value=0.00053  Score=44.83  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --++++|++|+|||||++.+..
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3578899999999999999975

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.97  E-value=0.00035  Score=46.31  Aligned_cols=26  Identities=38%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++..-|++.|++||||||+++.+...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567899999999999999999873

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.95  E-value=0.00052  Score=47.99  Aligned_cols=22  Identities=45%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++.|++|+|||||++.+..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999999987

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.94  E-value=0.00072  Score=55.30  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +--.++++|++|+|||||++.+..
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~  466 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLR  466 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred             CCcEEEEEecCCCcHHHHHHHhcc
Confidence            445789999999999999999998

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.94  E-value=0.0007  Score=45.39  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999866

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.00046  Score=50.55  Aligned_cols=26  Identities=35%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+--.++++|++|||||||++.+.+.
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            34557999999999999999999873

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.93  E-value=0.0011  Score=42.67  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++.|++|+|||++++.+..
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999999876

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.91  E-value=0.001  Score=48.17  Aligned_cols=25  Identities=24%  Similarity=0.212  Sum_probs=21.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.=-++++|++||||||+++.+..
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHh
Confidence            4444689999999999999999987

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.91  E-value=0.00063  Score=48.08  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=+++++|++|+|||||++.+.+
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g   93 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICN   93 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            445889999999999999999998

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.91  E-value=0.00075  Score=51.05  Aligned_cols=22  Identities=36%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .++++|++|+|||||++.+...
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6899999999999999999873

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.90  E-value=0.00063  Score=46.21  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHH
Confidence            389999999999999999987

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.90  E-value=0.00072  Score=50.15  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.++++|++||||||+++.+..
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3499999999999999999987

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.90  E-value=0.0016  Score=42.66  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-.+++.|++|+|||++++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            566899999999999999999876

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.88  E-value=0.0008  Score=44.98  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.+.|++.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.87  E-value=0.00066  Score=48.20  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .--++++|++||||||+++.+...
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhh
Confidence            446889999999999999999774

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.87  E-value=0.00087  Score=41.93  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999876

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.87  E-value=0.0012  Score=44.83  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...-.+++.|++|+|||++++.+..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            4556799999999999999999987

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.84  E-value=0.00088  Score=50.00  Aligned_cols=21  Identities=38%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~G  316 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVG  316 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999987

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.84  E-value=0.00092  Score=45.73  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.+.|++.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.83  E-value=0.0011  Score=49.52  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~G  334 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAG  334 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            688999999999999999997

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.83  E-value=0.00063  Score=50.11  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      --++++|++|||||||++.+...
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            46789999999999999999874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.83  E-value=0.0011  Score=44.08  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      +..-|++.|++||||||+++.+....
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998743

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.82  E-value=0.00073  Score=46.28  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --++++|++|+|||||++.+..
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3578999999999999999876

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.82  E-value=0.00072  Score=45.64  Aligned_cols=23  Identities=22%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-.|+++|++|+||||+.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999975

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.82  E-value=0.00099  Score=54.38  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=+++++|++|||||||++.+..
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g  438 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQR  438 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344789999999999999999987

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.82  E-value=0.0009  Score=44.82  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+++.|++|+|||++++.+..
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34699999999999999999987

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.81  E-value=0.001  Score=50.35  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~G  404 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAG  404 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999997

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.80  E-value=0.0011  Score=43.09  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+..-|+++|.+|+||||+++.+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3455789999999999999999876

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.80  E-value=0.00094  Score=41.43  Aligned_cols=20  Identities=35%  Similarity=0.639  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+++|++|+||||++..+..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.79  E-value=0.00081  Score=49.69  Aligned_cols=25  Identities=36%  Similarity=0.640  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +.--++++|++|||||||++.+...
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHH
Confidence            3446899999999999999999763

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.79  E-value=0.00091  Score=44.10  Aligned_cols=23  Identities=22%  Similarity=0.223  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ---++++|++|+|||||+..+..
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34578999999999999999987

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.78  E-value=0.00094  Score=43.37  Aligned_cols=22  Identities=27%  Similarity=0.205  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --++++|++|+|||||+..+..
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999999975

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.77  E-value=0.0015  Score=47.80  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=26.8

Q ss_pred             HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus         7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+...+.++..-.++++|++|+|||++++.+...
T Consensus       191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            3444444566678999999999999999999874

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.77  E-value=0.015  Score=42.23  Aligned_cols=24  Identities=42%  Similarity=0.494  Sum_probs=20.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|+++|.+|+||||++..+..
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345788889999999999988875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.77  E-value=0.0012  Score=42.70  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -..+.|+++|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3577899999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.76  E-value=0.0007  Score=47.13  Aligned_cols=21  Identities=43%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|..|||||||++.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~   26 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILN   26 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHh
Confidence            467899999999999999997

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.75  E-value=0.0021  Score=43.40  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=23.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ......+++.|++|+|||++++.+..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            45667899999999999999999987

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.74  E-value=0.00099  Score=45.60  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..|++.|.+||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999986

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.74  E-value=0.001  Score=48.48  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=22.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+-=+++++|++|+|||||++.+..
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag  179 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMAR  179 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3445789999999999999999998

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.72  E-value=0.0017  Score=44.71  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...-.+++.|++|+|||++++.+..
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHH
Confidence            3455699999999999999999987

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.0015  Score=49.53  Aligned_cols=20  Identities=35%  Similarity=0.654  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++++|++|+|||||++.+..
T Consensus       381 v~iiG~NGsGKSTLlk~l~G  400 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAG  400 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            79999999999999999987

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.68  E-value=0.0014  Score=43.73  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+++++|++||||||+.+.+..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            467999999999999999999876

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.66  E-value=0.0013  Score=42.36  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..+++.|++|+|||+|++.+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999877

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.66  E-value=0.0012  Score=46.94  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+++|++|||||||++.+..
T Consensus        26 ~~i~G~NGaGKTTll~ai~~   45 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAISF   45 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56999999999999999874

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.61  E-value=0.0018  Score=42.94  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+...|+++|.+|+||||+.+.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4566899999999999999999875

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.61  E-value=0.0029  Score=44.89  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=21.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ....+++++|++|+||||+.+.+..
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHH
Confidence            4456899999999999999998765

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.60  E-value=0.0015  Score=42.52  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -+++.|++|+|||++++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999763

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.57  E-value=0.0025  Score=46.35  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=25.5

Q ss_pred             HHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|..+-.+..-.+++.|+||+|||+|++.+..
T Consensus       206 ~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          206 KFKDMGIRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            34443345567899999999999999999987

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.53  E-value=0.0016  Score=44.44  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-.+++.|++|+|||++++.+..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            356799999999999999999987

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.53  E-value=0.0062  Score=44.54  Aligned_cols=66  Identities=18%  Similarity=0.141  Sum_probs=40.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhc---------------cCCCCCCCCCCcCCcceEEE--E--EEE-CC--eEEE
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVY---------------SNVEGLPPDRIVPTVGLNIG--R--IEV-SN--SKLV   71 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~---------------~~~~~~~~~~~~~t~~~~~~--~--~~~-~~--~~~~   71 (128)
                      .++..=|.++|+.++|||+|+|.++...               ...+.-.+.....|.|+..-  .  +.. .+  ..+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            3455667799999999999999775421               11111122334457776532  1  112 22  6799


Q ss_pred             EEeCCCCc
Q 033075           72 FWDLGGQP   79 (128)
Q Consensus        72 ~~D~~g~~   79 (128)
                      +.||.|..
T Consensus       144 llDTEG~~  151 (457)
T 4ido_A          144 LMDTQGTF  151 (457)
T ss_dssp             EEEECCBT
T ss_pred             EEeccCCC
Confidence            99999944

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0028  Score=46.16  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=25.8

Q ss_pred             HHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +|..+-.+..--+++.|+||+|||+|++.+..
T Consensus       206 ~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            44444445567899999999999999999987

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.52  E-value=0.0016  Score=43.32  Aligned_cols=24  Identities=38%  Similarity=0.376  Sum_probs=18.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +..-|++.|++||||||+++.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999876

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.52  E-value=0.0028  Score=44.26  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+++.|++|+||||+++.+..
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999977

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.51  E-value=0.002  Score=44.25  Aligned_cols=23  Identities=22%  Similarity=0.105  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-+++.|++|+|||++++.+..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34677779999999999999987

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.51  E-value=0.0016  Score=44.19  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --++++|++|+|||||+..+..
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3578999999999999999886

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.49  E-value=0.0019  Score=46.56  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=21.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ....-|+++|.+||||||+.+.+..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3455688999999999999999876

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.003  Score=45.85  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+..--+++.|+||+|||+|++.+.+
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHH
Confidence            34455699999999999999999987

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.49  E-value=0.0019  Score=41.51  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|++.|.+||||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999966

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.49  E-value=0.003  Score=43.93  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++.|++|+|||++++.+..
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999999976

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.49  E-value=0.0023  Score=43.83  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=21.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +....+++.|++|+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999998766

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.48  E-value=0.0022  Score=44.76  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999887

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.48  E-value=0.0011  Score=45.72  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=17.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +..-|++.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            445699999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.47  E-value=0.0024  Score=45.66  Aligned_cols=25  Identities=32%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++.-.++++|++|+|||||++.+..
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4455789999999999999999986

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.47  E-value=0.0026  Score=42.41  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+++.|++|+|||++++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999987

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.46  E-value=0.0025  Score=52.10  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=+++++|++|+|||||++.+..
T Consensus      1059 Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A         1059 GQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp             SSEEEEECSSSTTHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            33789999999999999999987

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.45  E-value=0.0023  Score=39.24  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .....+++.|++|+|||++++.+..
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHH
Confidence            4566799999999999999999987

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.003  Score=45.53  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=26.3

Q ss_pred             HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+|..+-.+..--+++.|+||+|||.|++.+.+
T Consensus       172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence            344444445567899999999999999999987

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.41  E-value=0.0011  Score=52.57  Aligned_cols=21  Identities=33%  Similarity=0.639  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaG  721 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTG  721 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999997

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.41  E-value=0.0021  Score=44.48  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999999987

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.40  E-value=0.0021  Score=44.37  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .-.++++|++|+||||++..+...
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~  128 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAI  128 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            447889999999999999998763

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.40  E-value=0.0024  Score=41.60  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++|++|+||||++..+..
T Consensus        25 ~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            357889999999999999865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.38  E-value=0.0022  Score=42.28  Aligned_cols=21  Identities=29%  Similarity=0.293  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -+++.|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999887754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.37  E-value=0.0016  Score=43.90  Aligned_cols=24  Identities=33%  Similarity=0.313  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|++.|.+||||||+++.+..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999877

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.36  E-value=0.0037  Score=48.28  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=27.7

Q ss_pred             HHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus         6 ~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ..+...+..+..-.++++|++|+|||++++.+...
T Consensus       190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~  224 (758)
T 3pxi_A          190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ  224 (758)
T ss_dssp             HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            34444555566778999999999999999999874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.36  E-value=0.0031  Score=43.11  Aligned_cols=22  Identities=36%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++.|++|+|||++++.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999977

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.34  E-value=0.0024  Score=44.72  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-.+++.|++|+|||+|++.+..
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999887

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.33  E-value=0.0026  Score=44.52  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ..|+++|++||||||+...+...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999773

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.30  E-value=0.0028  Score=43.21  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ....+++.|++|+|||++++.+..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999987

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.30  E-value=0.0028  Score=43.99  Aligned_cols=24  Identities=33%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .--++++|++|+||||++..+...
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHH
Confidence            346889999999999999998763

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.29  E-value=0.0027  Score=44.72  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .-|+|.|++|||||||...+...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            36889999999999999999873

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.28  E-value=0.0025  Score=44.97  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +---+.++|++|+|||||++.+..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~  153 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAV  153 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            344678999999999999999987

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.27  E-value=0.0036  Score=44.07  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .-|+|+|++|+|||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999873

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.24  E-value=0.003  Score=44.36  Aligned_cols=21  Identities=38%  Similarity=0.454  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+++.|++|+|||++++.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.23  E-value=0.0026  Score=47.16  Aligned_cols=20  Identities=25%  Similarity=0.323  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 033075           18 FHVLILGIDKAGKTTLLEKL   37 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l   37 (128)
                      =-++++|++|||||||++.+
T Consensus        40 e~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           40 RSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             SEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHH
Confidence            35789999999999999995

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.23  E-value=0.0027  Score=41.74  Aligned_cols=23  Identities=13%  Similarity=0.144  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-.+++.|++|+|||+++..+..
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999888876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.23  E-value=0.0031  Score=41.25  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...++++|++|+|||+|...+..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999999976

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.23  E-value=0.0039  Score=41.35  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ..|++.|..||||||+++.+...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999999874

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.19  E-value=0.0019  Score=43.43  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ..+++.|++|+|||++++.+...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            34889999999999999999873

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.19  E-value=0.0058  Score=47.14  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=26.8

Q ss_pred             HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus         7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+...+..+..-.++++|++|+|||++++.+...
T Consensus       197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence            3444445566778999999999999999999873

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.17  E-value=0.0033  Score=43.73  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-.+++.|++|+|||+|++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHH
Confidence            35799999999999999999987

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0062  Score=44.29  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=25.5

Q ss_pred             HHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|..+-.+..--+++.|+||+|||+|++.+..
T Consensus       207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             HHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence            34444445567899999999999999999987

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.0052  Score=45.05  Aligned_cols=32  Identities=16%  Similarity=0.156  Sum_probs=25.9

Q ss_pred             HHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|..+--+..--|++.|+||+|||+|++.+..
T Consensus       234 ~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          234 RFATLGIDPPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             HHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             HHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence            44444445667899999999999999999987

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.14  E-value=0.0038  Score=40.64  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..|++.|.+|+||||+.+.+..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999876

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.12  E-value=0.0045  Score=42.92  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+++.|++|+|||++++.+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999987

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.12  E-value=0.0024  Score=47.83  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +...++++|.+|||||||++.+...
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4567899999999999999999873

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.11  E-value=0.0036  Score=49.78  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|+|||||++.+..
T Consensus       463 ~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            679999999999999999986

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.10  E-value=0.0043  Score=40.80  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-|++.|.+||||||+++.+..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            45688999999999999999876

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.09  E-value=0.007  Score=42.40  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999873

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.09  E-value=0.0076  Score=41.27  Aligned_cols=21  Identities=38%  Similarity=0.422  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+++.|++|+|||++++.+..
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~   68 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAR   68 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            599999999999999999976

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.08  E-value=0.0039  Score=43.65  Aligned_cols=19  Identities=37%  Similarity=0.711  Sum_probs=17.1

Q ss_pred             EEEcCCCCCHHHHHHHHHh
Q 033075           21 LILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        21 ~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++|++|+|||||+..+..
T Consensus        27 ~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           27 LIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            7999999999999998744

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.07  E-value=0.0038  Score=46.59  Aligned_cols=24  Identities=21%  Similarity=0.235  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .-.++++|++|+|||||++.+...
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999999773

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.06  E-value=0.0054  Score=42.87  Aligned_cols=21  Identities=33%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -|+++|++|||||+|...+..
T Consensus         5 ~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            478899999999999999987

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.05  E-value=0.0031  Score=43.84  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++|++|+|||+|+..+..
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHH
Confidence            568999999999999999975

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.04  E-value=0.0036  Score=43.82  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-.+++.|++|+|||++++.+..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999999999987

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.03  E-value=0.0048  Score=43.63  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ....+++.|++|+|||++++.+..
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            355799999999999999999987

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.02  E-value=0.0046  Score=42.71  Aligned_cols=22  Identities=36%  Similarity=0.603  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --+++.|++|+|||||++.+..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~   53 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLN   53 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHH
Confidence            4688999999999999999986

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.0044  Score=43.26  Aligned_cols=29  Identities=14%  Similarity=0.192  Sum_probs=24.1

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ....+.-.+.+.|++|+|||++++.+...
T Consensus        40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           40 LMSSQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             HHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             hcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            33456678899999999999999999873

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.01  E-value=0.0054  Score=41.00  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +..-|++.|.+||||||+++.+..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446789999999999999999876

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.00  E-value=0.005  Score=48.25  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus         7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+...+..+..-.++++|++|+|||++++.+...
T Consensus       181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          181 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence            3334444455667899999999999999999873

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.98  E-value=0.0067  Score=42.29  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-++++|+++||||+|...+..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            3578899999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-14
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-13
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-13
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-12
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	6e-12
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-12
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	8e-12
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-11
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-11
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-10
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-10
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-10
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	9e-10
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-09
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-08
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-08
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-08
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-07
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-06
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-06
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-06
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	6e-06
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	8e-06
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-06
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-05
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-05
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	3e-05
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-04
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	3e-04
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-04
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	8e-04
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	0.001
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	0.001
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	0.002
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	0.002
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	0.003
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	0.003
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.003
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	0.004

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (151), Expect = 6e-14
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
             +L++G    GK+ LL +       VE       + T+G++     V       KL  W
Sbjct: 3   MKILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIW 56

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           D  GQ   R+I   YY  A  ++ V D      F +
Sbjct: 57  DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTN 92

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (150), Expect = 1e-13
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++     V       KL  W
Sbjct: 7   FKLLLIGNSGVGKSCLLLRF------SDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 60

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  GQ   R+I   YY  +H ++ V D      F   K
Sbjct: 61  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK 98

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (148), Expect = 4e-13
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 15/119 (12%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           +    +L+LG  ++GK+T++++++             +V T G+   + +V       +D
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRI----------LHVVLTSGIFETKFQVDKVNFHMFD 53

Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF-----GMRICKERHF 128
           +GGQ   R  W + + +  A++FV+ ++  +          +          I   R  
Sbjct: 54  VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 112

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (142), Expect = 2e-12
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
           F +L++G    GKT +L +        E       + T+G++     +       KL  W
Sbjct: 7   FKLLLIGDSGVGKTCVLFRF------SEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
           D  GQ   R+I   YY  A  ++ V D      F
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 94

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 6e-12
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 2/113 (1%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
           T   +LI+G    GK++LL +        +      I     +    ++ + +KL  WD 
Sbjct: 6   TTLKILIIGESGVGKSSLLLRF--TDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63

Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
            GQ   R++   YY  A  V+ V D      F      L +        +   
Sbjct: 64  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN 116

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 7e-12
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN 67
           +   IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N
Sbjct: 3   VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQS-------VTTIPTVGFNVETVTYKN 55

Query: 68  SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127
            K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +    R  ++  
Sbjct: 56  VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 115

Query: 128 F 128
            
Sbjct: 116 I 116

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 57.3 bits (137), Expect = 8e-12
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 3   SLFYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG 61
           ++F  ++  ++ +  E  +LILG+D AGKTT+L +L+               PT+G N+ 
Sbjct: 2   NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-------VTTKPTIGFNVE 54

Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121
            +   N KL  WDLGGQ  +R  W  YY +  AV+FV+D+    R   +   L       
Sbjct: 55  TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE 114

Query: 122 ICKERHF 128
             ++   
Sbjct: 115 ELQDAAL 121

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 2e-11
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
           LF  +W+ +F   E  V+I+G+D AGKTT+L +                 PT+G N+  I
Sbjct: 3   LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFS-------MNEVVHTSPTIGSNVEEI 54

Query: 64  EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
            ++N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++
Sbjct: 55  VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR 102

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (131), Expect = 7e-11
 Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
              +L+LG  ++GK+T L++++ ++            PT G++    E+ N      D+G
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRIIHG---------QDPTKGIHEYDFEIKNVPFKMVDVG 52

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           GQ   R  W + ++   +++F++ ++   +  
Sbjct: 53  GQRSERKRWFECFDSVTSILFLVSSSEFDQVL 84

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (125), Expect = 3e-10
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F +LI+G    GKT+ L +      +        +     +          KL  WD  G
Sbjct: 6   FKILIIGNSSVGKTSFLFRY--ADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
           Q   R+I   YY  A   + + D      F
Sbjct: 64  QERYRTITTAYYRGAMGFILMYDITNEESF 93

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 4e-10
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F  L++G    GK+ LL +   +    +      I    G  I  +     KL  WD  G
Sbjct: 6   FKFLVIGNAGTGKSCLLHQF--IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           Q   RS+   YY  A   + V D      +  
Sbjct: 64  QERFRSVTRSYYRGAAGALLVYDITSRETYNA 95

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 5e-10
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F V+++G    GKT LL + K   + + G     +       +  ++    KL  WD  G
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKD-GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           Q   RS+   YY +AHA++ + D    + F++ +
Sbjct: 66  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ 99

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 9e-10
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
           F ++++G    GKT L+ +        +GL P     T+G++     V       KL  W
Sbjct: 6   FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 59

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
           D  GQ   RSI + YY  A+A++   D  C   F
Sbjct: 60  DTAGQERFRSITQSYYRSANALILTYDITCEESF 93

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (122), Expect = 1e-09
 Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG  ++GK+T +++++ ++ +         VPT G+     ++ +      D+G
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHGS--------GVPTTGIIEYPFDLQSVIFRMVDVG 53

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
           GQ   R  W   +E   +++F++  +   + 
Sbjct: 54  GQRSERRKWIHCFENVTSIMFLVALSEYDQV 84

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 1e-08
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+G
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 54

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
           GQ  LRS W  Y+E    +++V+D+A   R +D +  L              
Sbjct: 55  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 106

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 1e-08
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG  ++GK+T+++++K ++               G+        +     +D+G
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIH-----------EAGTGIVETHFTFKDLHFKMFDVG 50

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           GQ   R  W   +E   A++F +  +         
Sbjct: 51  GQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 85

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 4e-08
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV------------ 65
             +L LG    GKTT L +        +     + + TVG++     V            
Sbjct: 6   IKLLALGDSGVGKTTFLYRY------TDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 59

Query: 66  --SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104
                 L  WD  GQ   RS+   ++ +A   + + D    
Sbjct: 60  KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ 100

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 3e-07
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            +L++G+D AGKTT+L KLK              +PT+G N+  +E  N     WD+GGQ
Sbjct: 2   RILMVGLDAAGKTTILYKLK-------LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
             +R +W  Y++    ++FV+D+    R  
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
              E  +L+LG+D AGKTTLL++L              I PT G NI  ++    KL  W
Sbjct: 13  PDQEVRILLLGLDNAGKTTLLKQLA-------SEDISHITPTQGFNIKSVQSQGFKLNVW 65

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D+GGQ  +R  W  Y+E    +++VID+A   RFE++ 
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 103

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 42.8 bits (99), Expect = 2e-06
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE 64
           F GL+K         ++ LG+D AGKTTLL  LK            + VPT+      + 
Sbjct: 6   FLGLYKK-----TGKLVFLGLDNAGKTTLLHMLKDDR-------LGQHVPTLHPTSEELT 53

Query: 65  VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICK 124
           ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L          
Sbjct: 54  IAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA 113

Query: 125 ERHF 128
               
Sbjct: 114 NVPI 117

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 4e-06
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F V+++G    GK+ LL +     +         I         +++    K   WD  G
Sbjct: 5   FKVVLIGDSGVGKSNLLSRF--TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
           Q   R I   YY  A   + V D A    +E+ +  L
Sbjct: 63  QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL 99

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 6e-06
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           +L LG+D AGKTTLL  LK+            + PT       + + N K   +DLGG  
Sbjct: 3   LLFLGLDNAGKTTLLHMLKNDR-------LATLQPTWHPTSEELAIGNIKFTTFDLGGHI 55

Query: 80  GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
             R +W+ Y+ E + +VF++DAA P RF++++  L   F +   K+  F
Sbjct: 56  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 104

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 8e-06
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F  +I+G    GK+ LL +               +       +  I+    KL  WD  G
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMVNIDGKQIKLQIWDTAG 61

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           Q   RSI   YY  A   + V D      F  
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNH 93

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 9e-06
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           VL +G+  +GKT L  +L +               ++  +    +V+N++     L   P
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQ-------YRDTQTSITDSSAIYKVNNNRGNSLTLIDLP 55

Query: 80  GLRSI----WEKYYEEAHAVVFVIDAACPSRF 107
           G  S+     +++   A AVVFV+D+A   R 
Sbjct: 56  GHESLRFQLLDRFKSSARAVVFVVDSAAFQRE 87

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-05
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F V++LG    GKT+L+ +     +         +  +       I      L  WD  G
Sbjct: 4   FKVVLLGEGCVGKTSLVLRY--CENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
           Q    ++   YY +++  + V D      F+  K  + +   M   +    
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC 112

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-05
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F  +I+G    GK+ LL +            P  I    G  I  +     KL  WD  G
Sbjct: 5   FKYIIIGDMGVGKSCLLHQF--TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 62

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           Q   R++   YY  A   + V D    S + 
Sbjct: 63  QERFRAVTRSYYRGAAGALMVYDITRRSTYN 93

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 2/105 (1%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
            +F +++LG    GK++L+ +   V           I          ++ +  K   WD 
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRF--VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62

Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120
            GQ    S+   YY  A A + V D      F  +K  + +    
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
            +  +V + G   +GK++ +  L+ + +  EG     +V            +   +VFWD
Sbjct: 54  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113

Query: 75  LGGQPGLRSIWEKYYEEAH---AVVFVIDAACPSRFEDSKTAL 114
           L G        + Y E+        F+I +A   +  D   A 
Sbjct: 114 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAK 156

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 2/113 (1%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
           T   +++LG    GK++++ +   V ++        I          I     K   WD 
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRF--VSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59

Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
            GQ    S+   YY  A A + V D   P  F  ++  + +            
Sbjct: 60  AGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIA 112

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F ++ LG    GKT+L+ +   +Y + +      I          +E    +L  WD  G
Sbjct: 1   FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 58

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           Q   RS+   Y  ++ A V V D    + F+ + 
Sbjct: 59  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT 92

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 19  HVLILGIDKAGKTTLLEKL----KSVYSNVEGLPPDRIVPTV---GLNIGRIEVSNSKLV 71
            ++I+G    GK+TLL +L    +++ +++ G   D I   +   G+    ++ +  +  
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRIC 123
             DL  + G+    ++  E+A  V+FV+DA+ P   ED K          + 
Sbjct: 62  TNDLVERLGIERTLQE-IEKADIVLFVLDASSPLDEEDRKILERIKNKRYLV 112

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 17/102 (16%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNSKLVFWDLGG 77
           ++I G   +GKT+LL  L +          D + PTV     +   +   S +   D  G
Sbjct: 6   IIIAGPQNSGKTSLLTLLTT----------DSVRPTVVSQEPLSAADYDGSGVTLVDFPG 55

Query: 78  QPGLRSIWEKYY-----EEAHAVVFVIDAACPSRFEDSKTAL 114
              LR     Y           +  V     P +   +   L
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFL 97

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (79), Expect = 8e-04
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
             V+ILG    GKT+L+ +  +     +          +   +       + +  WD  G
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVN-DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           Q   +S+   +Y  A   V V D    S FE+
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFEN 93

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK-----LVF 72
           F ++++G    GKT L  +         G  PDR   T+G++     V          ++
Sbjct: 3   FKIIVIGDSNVGKTCLTYRF------CAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 56

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
              G +   +S+ + YY   HAVVFV D    + F
Sbjct: 57  DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASF 91

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.001
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  + ++G+  +GKTT +  +        G   + ++PTVG N+ +I   N  +  WD+G
Sbjct: 2   EMELTLVGLQYSGKTTFVNVI------ASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 55

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           GQP  RS+WE+Y     A+V+++DAA   + E 
Sbjct: 56  GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEA 88

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           V ++G   AGK++LL  +   +  +   P   + P +G           +    D+ G  
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG---VVEVSEEERFTLADIPGII 60

Query: 80  GLRSIWEKYYEEAHAVVFVIDAAC 103
              S  +    E    +       
Sbjct: 61  EGASEGKGLGLEFLRHIARTRVLL 84

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV---F 72
            E+ +++LG    GK+ L  +       V+G+  ++  PT+  +  +    + +      
Sbjct: 2   REYKLVVLGSGGVGKSALTVQF------VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEI 55

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
            D  G     ++ + Y +       V      S F D +    +   ++  ++   
Sbjct: 56  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVF 72
           TE+ ++++G    GK+ L  +L      ++    D   PT+  +  +  V + +   L  
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
            D  GQ    ++ ++Y       + V        FE
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFE 91

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW--- 73
           E+ V++LG    GK+ L  +       V G   ++  PT+     +    +S        
Sbjct: 3   EYKVVVLGSGGVGKSALTVQF------VTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL 56

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           D  G     S+ + Y +     + V        F+D K
Sbjct: 57  DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK 94

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.5 bits (75), Expect = 0.003
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
             V+ILG    GKT+L+ +       V     ++   T+G +    EV        +  W
Sbjct: 3   LKVIILGDSGVGKTSLMNQY------VNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 56

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           D  GQ   +S+   +Y  A   V V D   P+ F+ 
Sbjct: 57  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 92

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
            +++G    GKT LL              P   VPTV  N     +   +   L  +D  
Sbjct: 6   CVVVGDGAVGKTCLLISY------TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 59

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
           GQ     +    Y +    +       PS FE+ K 
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.91
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.9
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.9
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.9
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.89
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.89
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.89
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.88
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.88
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.88
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.88
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.88
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.88
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.88
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.87
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.86
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.84
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.83
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.83
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.81
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.81
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.8
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.79
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.77
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.75
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.71
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.71
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.67
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.62
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.58
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.54
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.52
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.51
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.42
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.37
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.36
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.34
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.34
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.31
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.3
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.3
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.28
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.27
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.26
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.25
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.23
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.23
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.2
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.19
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.16
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.09
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.09
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.08
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.07
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.0
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.93
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.85
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.55
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.5
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.28
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.26
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.16
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.13
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.12
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.07
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.02
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.98
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.97
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.96
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.94
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.92
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.91
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.91
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.89
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.89
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.88
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.88
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.87
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.86
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.85
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.83
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.8
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.79
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.79
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.79
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.79
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.78
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.76
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.74
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.74
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.74
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.74
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.72
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.72
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.72
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.72
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.71
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.7
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.7
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.68
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.66
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.65
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.64
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.64
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.6
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.57
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.55
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.55
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.54
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.54
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.54
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.53
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.51
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.51
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.51
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.5
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.5
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.5
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.49
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.49
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.47
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.46
d1okkd2	207	GTPase domain of the signal recognition particle r	97.46
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.44
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.44
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.42
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.42
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.41
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.38
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.38
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.37
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.36
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.36
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.34
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.3
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.25
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.25
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.22
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.2
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.2
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.18
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.15
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.09
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.08
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.07
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.03
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.02
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.98
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.98
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.94
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.91
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.9
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.83
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.79
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.77
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.75
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.73
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.71
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.71
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.69
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.66
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.56
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.52
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.48
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.45
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.41
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.41
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.4
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.39
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.38
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.35
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.35
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.34
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.3
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.29
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.28
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.27
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.19
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.19
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.14
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.13
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.12
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.04
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.01
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.0
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.98
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.98
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.97
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.92
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.9
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.89
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.88
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.87
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.78
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.77
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.77
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.67
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.61
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.53
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.46
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.45
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.14
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.12
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.98
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.93
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.81
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.8
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.8
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.65
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.58
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.49
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.43
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.4
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.36
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.13
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.78
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.61
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.61
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.48
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.81
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.64
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.62
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.74
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.69
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	90.56
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.18
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.89
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.75
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.63
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.55
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	89.55
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.47
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.26
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.26
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.24
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.67
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	87.15
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.74
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	86.68
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	86.42
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.97
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	85.72
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.72
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	84.64
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	83.19
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.89
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	82.77
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.85

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.92  E-value=2.1e-24  Score=136.62  Aligned_cols=106  Identities=33%  Similarity=0.658  Sum_probs=98.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +++||+++|+++||||||++++..      +.+...+.||.+.....++.++..+.+||++|++.+...+..++..++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~------~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   74 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   74 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHc------CCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchh
Confidence            478999999999999999999999      77778888999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           96 VFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        96 v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++|||++++++|+++..|+..+......++.|
T Consensus        75 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  106 (164)
T d1zd9a1          75 VYMVDAADQEKIEASKNELHNLLDKPQLQGIP  106 (164)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC
T ss_pred             hcccccccccccchhhhhhhhhhhhhcccCCc
Confidence            99999999999999999999999887766665

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.91  E-value=1.9e-24  Score=138.78  Aligned_cols=119  Identities=33%  Similarity=0.602  Sum_probs=99.2

Q ss_pred             hhhhHHHHhhh-hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075            2 FSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (128)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   80 (128)
                      |++++++|.++ .+++.+||+++|+++||||||++++..      +.+. ...+|.+.........+..+.+||++|++.
T Consensus         1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~   73 (182)
T d1moza_           1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI------GEVV-TTKPTIGFNVETLSYKNLKLNVWDLGGQTS   73 (182)
T ss_dssp             CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC------SEEE-EECSSTTCCEEEEEETTEEEEEEEEC----
T ss_pred             ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhc------CCCC-ccccccceEEEEEeeCCEEEEEEecccccc
Confidence            67788888765 567999999999999999999999986      4332 455788888888888899999999999999


Q ss_pred             chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++..+..+++.++++++|||+++++++.++..|+.+++......+.|
T Consensus        74 ~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~p  120 (182)
T d1moza_          74 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA  120 (182)
T ss_dssp             CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE
T ss_pred             cchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcc
Confidence            99999999999999999999999999999999999988876655544

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.2e-24  Score=133.93  Aligned_cols=105  Identities=18%  Similarity=0.347  Sum_probs=90.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +++||+++|+++||||||++++..      +++.+.+.++.+.... .+..++  ..+.+||++|.+.+...+..+++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   75 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG   75 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc------CCCCCccCCccccccceeEEeeeeEEEeccccccCccccccccccccccc
Confidence            578999999999999999999999      8888888899886643 334444  7899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      |++++|||++++++|+++..|+..+.+....++.
T Consensus        76 ~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~  109 (167)
T d1c1ya_          76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDV  109 (167)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCC
T ss_pred             ceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999998765433333

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.5e-23  Score=133.32  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=91.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|++++|||||++++..      +.+.+.+.+|.+... ..+..++  ..+.+||++|.+.+..++..+++.
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~   75 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQ------KIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT   75 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHH------SSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHh------CCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhh
Confidence            3679999999999999999999999      788888888887654 3445666  778899999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      +|++++|||+++++||+++..|+.++.+.....+.
T Consensus        76 ~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~  110 (169)
T d1x1ra1          76 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF  110 (169)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCC
T ss_pred             ccEEEEecccccchhhhccchhhHHHHhhccccCc
Confidence            99999999999999999999999998765433333

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=133.39  Aligned_cols=100  Identities=21%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~   94 (128)
                      +||+++|++|||||||++++.+      ..+. ...++.+..+ ..+.+++  ..+.+||++|++.+..++..+++.+|+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~------~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~   74 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGG------VEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDA   74 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT------C----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSE
T ss_pred             eEEEEECCCCcCHHHHHHHHhC------CccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhh
Confidence            7999999999999999999987      4433 3334444443 4566776  788999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075           95 VVFVIDAACPSRFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~  124 (128)
                      +++|||++++++|+++..|+.++.......
T Consensus        75 ~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~  104 (168)
T d2gjsa1          75 YVIVYSVTDKGSFEKASELRVQLRRARQTD  104 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCC--
T ss_pred             hceeccccccccccccccccchhhcccccc
Confidence            999999999999999999999986654333

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=133.29  Aligned_cols=102  Identities=24%  Similarity=0.273  Sum_probs=90.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|++|||||||++++..      +.+.+.+.||.+..+ ..+.+++  ..+.+||++|.+.+..++..+++.
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~   75 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVE------GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSID   75 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH------SCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSS
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHh------CCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhh
Confidence            4678999999999999999999999      888888889988764 4566777  678899999999999888999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +|++++|||++++++|+++..|+.++.+...
T Consensus        76 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~  106 (167)
T d1xtqa1          76 INGYILVYSVTSIKSFEVIKVIHGKLLDMVG  106 (167)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhhhhccc
Confidence            9999999999999999999999999876433

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.90  E-value=2.6e-23  Score=132.10  Aligned_cols=100  Identities=14%  Similarity=0.243  Sum_probs=86.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +.+||+++|+++||||||++++..      +++...+.+|.+..+ ..+.+++  ..+.+||++|.+.+..++..+++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~------~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~   76 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   76 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh------CCCCcccCCccccccccccccccccccccccccccccchhhhhhhccccc
Confidence            568999999999999999999999      888888889988764 4455666  6788999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMR  121 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~  121 (128)
                      |++++|||++++++|+.+..|+.++.+..
T Consensus        77 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~  105 (168)
T d1u8za_          77 EGFLCVFSITEMESFAATADFREQILRVK  105 (168)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEeeccchhhhhhHHHHHHHHHHhh
Confidence            99999999999999999999999987543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-23  Score=132.74  Aligned_cols=105  Identities=15%  Similarity=0.255  Sum_probs=90.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.+||+++|+++||||||++++..      +.+...+.++.... ...+.+++  +.+.+||++|.+++...+..++++
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~   77 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQ------SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA   77 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHH------SSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhcc
Confidence            4679999999999999999999999      77777777776544 35566776  678899999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE  125 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~  125 (128)
                      +|++++|||++++++|+.+..|+..+.......+
T Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  111 (173)
T d2fn4a1          78 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD  111 (173)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC
T ss_pred             ceeeeeecccccccccchhhhhhHHHHHHhccCC
Confidence            9999999999999999999999998865433333

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.90  E-value=2.9e-23  Score=132.29  Aligned_cols=113  Identities=35%  Similarity=0.702  Sum_probs=97.1

Q ss_pred             HHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHH
Q 033075            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK   87 (128)
Q Consensus         8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~   87 (128)
                      .+..++.++.+||+++|+++||||||++++..      +.++ ...+|.+............+.+||++|...++..+..
T Consensus         3 ~~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   75 (173)
T d1e0sa_           3 VLSKIFGNKEMRILMLGLDAAGKTTILYKLKL------GQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH   75 (173)
T ss_dssp             HHHHHHTTCCEEEEEEEETTSSHHHHHHHTTC------CCCE-EEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGG
T ss_pred             hhhhhhCCCeEEEEEECCCCCCHHHHHHHHhc------CCCC-CccceeeeeEEEeeccceeeEEecCCCcchhhhHHHh
Confidence            34444567899999999999999999999987      5543 3457788887788888899999999999999999999


Q ss_pred             hhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           88 YYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +++.++++++|+|+++++++.++..|+...+......+.|
T Consensus        76 ~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~p  115 (173)
T d1e0sa_          76 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI  115 (173)
T ss_dssp             GTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE
T ss_pred             hhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccce
Confidence            9999999999999999999999999999998876655544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.7e-23  Score=131.58  Aligned_cols=107  Identities=15%  Similarity=0.253  Sum_probs=87.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ++++||+++|+++||||||++++..      +.+...+.+|.+.. ...+.+++  ..+.+||++|...+...+..+++.
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   76 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQ------SYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT   76 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHH------SCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh------CCCCcccCcccccceeeeeeecccccccccccccccccccccccccccc
Confidence            4679999999999999999999999      88888888888754 35556666  679999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +|++++|||++++++|+.+..|+.++.......+.|
T Consensus        77 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  112 (171)
T d2erya1          77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFP  112 (171)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCS
T ss_pred             cceEEEeeccccccchhhHHHHhHHHHhhcccCCCC
Confidence            999999999999999999999999877654444433

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.89  E-value=5.6e-23  Score=131.00  Aligned_cols=107  Identities=36%  Similarity=0.644  Sum_probs=95.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      ..+.+||+++|+++||||||++++..      +.+. ...++.+.+...+...+..+.+||++|.+.++..+..+++.+|
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~------~~~~-~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLAS------EDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCC------SCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhc------CCCC-cceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccc
Confidence            35789999999999999999999987      5543 4457788888888888999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|||++++.++.++..|+.++.......+.|
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~p  119 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVP  119 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCe
Confidence            9999999999999999999999998877766665

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=128.47  Aligned_cols=106  Identities=22%  Similarity=0.339  Sum_probs=90.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +++||+++|+++||||||+++++.      +.+...+.++.+... .....++  ..+.+||++|.+.+...+..+++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a   75 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVT------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG   75 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh------CCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcc
Confidence            679999999999999999999999      888888888887543 3455565  6788999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +++++|||++++++|+++..|+.++.......+.|
T Consensus        76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  110 (167)
T d1kaoa_          76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP  110 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred             cceeeeeeecchhhhhhhhchhhhhhhhccCCCCC
Confidence            99999999999999999999999886544333333

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.89  E-value=1.3e-22  Score=128.11  Aligned_cols=105  Identities=37%  Similarity=0.668  Sum_probs=93.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +.+||+++|+++||||||+++|..      ..+ ..+.+|.+.....+..++..+.+||++|++.++..+..+++.++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   73 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNG------EDV-DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGL   73 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT------CCC-SSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcC------CCC-CcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcc
Confidence            468999999999999999999986      333 4677899988888889999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           96 VFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        96 v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++|||+++..++.++..++.+.+......+.|
T Consensus        74 i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p  105 (165)
T d1ksha_          74 IWVVDSADRQRMQDCQRELQSLLVEERLAGAT  105 (165)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred             eeeeecccchhHHHHHHhhhhhhhhcccCCCc
Confidence            99999999999999999999888776665554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.9e-24  Score=134.52  Aligned_cols=99  Identities=19%  Similarity=0.427  Sum_probs=83.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE--ECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--VSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~--~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      -++||+++|+++||||||++++..      +.+...+.+|++.+.....  .++  ..+.+||++|+..+..++..++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~   75 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   75 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTT
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHh------CCCCcccccceeccccccccccccccccccccccccccccceecchhccc
Confidence            368999999999999999999998      8888888999987754443  344  789999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++++|||+++++||+++.+|+.++...
T Consensus        76 ~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~  104 (170)
T d1i2ma_          76 AQCAIIMFDVTSRVTYKNVPNWHRDLVRV  104 (170)
T ss_dssp             CCEEEEEEETTSGGGGTTHHHHHHHHHHH
T ss_pred             ccchhhccccccccccchhHHHHHHHhhc
Confidence            99999999999999999999999987653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.2e-23  Score=132.16  Aligned_cols=100  Identities=20%  Similarity=0.260  Sum_probs=86.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+..+||+++|+++||||||++++..      +.+...+.+|++... ..+...+  +.+.+||++|++.+...+..+++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHH------SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhh------CCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            35688999999999999999999999      888888888887543 3344444  77899999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++|++++|||+++++||+++..|+.+..+
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~  108 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELK  108 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877776654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.4e-23  Score=132.64  Aligned_cols=98  Identities=22%  Similarity=0.298  Sum_probs=86.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +.+||+++|+++||||||++++..      +.+...+.+|.+... .....++  ..+.+||++|++++...+..+++.+
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~   75 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTT------NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT   75 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CceEEEEECCCCcCHHHHHHHHHh------CCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhccccc
Confidence            368999999999999999999999      888888889998664 3444555  6799999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      |++++|||+++++||+++.+|+.+...
T Consensus        76 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~  102 (191)
T d2ngra_          76 DVFLVCFSVVSPSSFENVKEKWVPEIT  102 (191)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             ceeecccccchHHHHHHHHHHHHHHHh
Confidence            999999999999999999887766554

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=128.42  Aligned_cols=97  Identities=19%  Similarity=0.302  Sum_probs=86.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .+||+++|+++||||||+++++.      +.+.+.+.+|++.... ....++  ..+.+||++|.+.+...+..+++.+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~------~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~   75 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVK------GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGH   75 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT------CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CCCCCccCcceeeccccceeeccccceecccccccccccccccccccccee
Confidence            68999999999999999999999      8888888899987643 445555  67888999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++++|||++++++|+++..|+.++..
T Consensus        76 ~~ilv~d~~~~~s~~~~~~~~~~~~~  101 (171)
T d2erxa1          76 AFILVYSITSRQSLEELKPIYEQICE  101 (171)
T ss_dssp             EEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred             EEEEEeecccccchhcccchhhhhhh
Confidence            99999999999999999999988765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=128.70  Aligned_cols=102  Identities=18%  Similarity=0.160  Sum_probs=84.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .+||+++|+++||||||++++..      +.+.+.+.||++..+. .+..++  ..+.+||++|.+.+. ....+++.++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~------~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~   74 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLT------KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGE   74 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh------CCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccc
Confidence            58999999999999999999999      8888899999998753 344555  789999999998875 4567889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKE  125 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~  125 (128)
                      ++++|||++++++|+.+..|+..........+
T Consensus        75 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~  106 (168)
T d2atva1          75 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKN  106 (168)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSC
T ss_pred             cceeecccCCccchhhhhhhcccccccccccC
Confidence            99999999999999999988766544433333

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=129.89  Aligned_cols=98  Identities=23%  Similarity=0.330  Sum_probs=85.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +.||+++|++++|||||++++..      +.+++.+.+|.+... .....++  ..+.+||++|++.+...+..+++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~   75 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSK------DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD   75 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh------CCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccch
Confidence            57999999999999999999999      888888889887553 3344555  67999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++|||+++++||+++..|+.+....
T Consensus        76 ~~ilv~d~~~~~Sf~~~~~~~~~~~~~  102 (177)
T d1kmqa_          76 VILMCFSIDSPDSLENIPEKWTPEVKH  102 (177)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            999999999999999998877766553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.3e-22  Score=128.85  Aligned_cols=97  Identities=27%  Similarity=0.419  Sum_probs=84.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|++|||||||++++..      +++...+.++.+.+.  ..+...+  ..+.+||++|++.+..+++.+++.+
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~a   78 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGA   78 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHc------CCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcC
Confidence            58999999999999999999999      788878888887654  3444444  6799999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      |++++|||+++++++.++..|+..+..
T Consensus        79 d~~ilv~d~~~~~s~~~~~~~~~~~~~  105 (169)
T d3raba_          79 MGFILMYDITNEESFNAVQDWSTQIKT  105 (169)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             CEEEEEEECccchhhhhhhhhhhhhhc
Confidence            999999999999999999998876643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-22  Score=128.41  Aligned_cols=97  Identities=23%  Similarity=0.436  Sum_probs=79.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+++||||||++++..      +.+.+.+.+|.+....  ....++  ..+.+||++|+..++.++..+++++
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   76 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCE------NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDS   76 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH------CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCC
Confidence            58999999999999999999999      8888888998886643  444444  7899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      |++++|||+++++||+++..|+..+..
T Consensus        77 ~~~i~v~d~~~~~Sf~~~~~~~~~~~~  103 (167)
T d1z08a1          77 NGAILVYDITDEDSFQKVKNWVKELRK  103 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEeCCchhHHHhhhhhhhhccc
Confidence            999999999999999999999987643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.5e-22  Score=126.83  Aligned_cols=97  Identities=24%  Similarity=0.460  Sum_probs=87.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+++||||||++++..      +++.+.+.+|.+.++  ..+...+  ..+.+||++|.+.+..++..+++.+
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~------~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~   76 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVS------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNA   76 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhcc
Confidence            58999999999999999999999      888888899988654  4555665  7899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      |++++|||++++++|+++..|+.+...
T Consensus        77 ~~~ilv~d~~~~~s~~~~~~~~~~~~~  103 (170)
T d1ek0a_          77 QAALVVYDVTKPQSFIKARHWVKELHE  103 (170)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCcccchhhhhhhhhhhcc
Confidence            999999999999999999999887644

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-22  Score=127.44  Aligned_cols=101  Identities=19%  Similarity=0.285  Sum_probs=88.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      +++||+++|+++||||||++++.+      +.+++.+.++.+.... .+...+  ..+.+||++|.+.+...++.+++.+
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~   75 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG   75 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHh------CCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcc
Confidence            568999999999999999999999      8888888888887643 333444  6799999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      +++++|||++++++|+++..|+..+.+...
T Consensus        76 ~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~  105 (166)
T d1ctqa_          76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD  105 (166)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             cccceeecccccccHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998876443

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.4e-22  Score=127.02  Aligned_cols=97  Identities=31%  Similarity=0.562  Sum_probs=85.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|++|||||||++++..      +.++..+.++.+..  ...+.+++  +++.+||++|++.+..+++.+++++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~------~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~   78 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   78 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcc
Confidence            58999999999999999999999      77777777777655  34556666  6788999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +++++|+|++++.+++.+.+|+..+.+
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~i~~  105 (171)
T d2ew1a1          79 NALILTYDITCEESFRCLPEWLREIEQ  105 (171)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ceEEEeeecccchhhhhhhhhhhhhcc
Confidence            999999999999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.6e-22  Score=127.11  Aligned_cols=102  Identities=26%  Similarity=0.462  Sum_probs=88.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+.+||+++|+++||||||++++.+      +++...+.++.+...  ..+.+++  ..+.+||++|++.+..++..+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   78 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTD------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR   78 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHh------CCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHh
Confidence            3578999999999999999999999      788778777776653  3455665  67999999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRI  122 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~  122 (128)
                      .+|++++|||++++++++.+..|+.++.....
T Consensus        79 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~  110 (177)
T d1x3sa1          79 GAQGVILVYDVTRRDTFVKLDNWLNELETYCT  110 (177)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS
T ss_pred             cCCEEEEEEECCCccccccchhhhhhhccccc
Confidence            99999999999999999999999999876543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5e-22  Score=126.17  Aligned_cols=100  Identities=23%  Similarity=0.385  Sum_probs=88.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEE--EEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~   89 (128)
                      +...+||+++|+++||||||++++..      +.+++.+.++.+.....  ....+  ..+.+||++|++.+..++..++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~   76 (170)
T d1r2qa_           3 KICQFKLVLLGESAVGKSSLVLRFVK------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY   76 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHH
T ss_pred             ceeEEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHh
Confidence            45789999999999999999999999      88888888998877543  33444  6799999999999999999999


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++++++++|||++++++|+++..|+..+.+
T Consensus        77 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~  106 (170)
T d1r2qa_          77 RGAQAAIVVYDITNEESFARAKNWVKELQR  106 (170)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             hCcceEEEEeccchhhHHHHHHHHhhhhhh
Confidence            999999999999999999999999988754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.4e-22  Score=128.13  Aligned_cols=97  Identities=24%  Similarity=0.489  Sum_probs=86.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|++|||||||++++..      +.+...+.+|++...  ......+  ..+.+||++|.+.+..++..+++++
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~------~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   75 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGA   75 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccC
Confidence            47999999999999999999999      888888888888653  3444555  6789999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +++++|||++++++|+++..|+.++..
T Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~  102 (164)
T d1z2aa1          76 QACVLVFSTTDRESFEAISSWREKVVA  102 (164)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ceEEEEEeccchhhhhhcccccccccc
Confidence            999999999999999999999998864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.7e-22  Score=125.95  Aligned_cols=98  Identities=23%  Similarity=0.405  Sum_probs=86.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEE--EEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      +++||+++|+++||||||++++..      +++...+.+|.+.....  ...++  ..+.+||++|++.+..++..+++.
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~   76 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVE------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRG   76 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhh
Confidence            689999999999999999999999      88888888888876543  33344  568899999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++++++|||++++++|+.++.|+.++..
T Consensus        77 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~  104 (167)
T d1z0ja1          77 SAAAIIVYDITKEETFSTLKNWVRELRQ  104 (167)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEeeechhhhhhhHHHhhhhhhh
Confidence            9999999999999999999999977654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.1e-22  Score=128.72  Aligned_cols=98  Identities=23%  Similarity=0.440  Sum_probs=79.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+++||||||+++++.      +.+...+.+|.+.+.  ..+.+++  ..+.+||+||++.+..++..+++++
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   75 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGA   75 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            47999999999999999999999      888888888887654  4555555  6788899999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++++|||.+++++++.+..|+..+...
T Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~  103 (166)
T d1g16a_          76 MGIILVYDITDERTFTNIKQWFKTVNEH  103 (166)
T ss_dssp             EEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             CEEEEEEECCCccCHHHHHhhhhhhhcc
Confidence            9999999999999999998887766543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.6e-22  Score=124.81  Aligned_cols=97  Identities=23%  Similarity=0.416  Sum_probs=85.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +||+++|+++||||||++++.+      ++++..+.++.+....  ....++  ..+.+||++|++.+...+..+++.++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   74 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSA   74 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCS
T ss_pred             CEEEEECCCCcCHHHHHHHHHh------CCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccc
Confidence            6899999999999999999999      8888888888886644  333444  78999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      ++++|||++++++|+++..|+.++...
T Consensus        75 ~~ilv~d~~~~~s~~~i~~~~~~~~~~  101 (164)
T d1yzqa1          75 AAVVVYDITNVNSFQQTTKWIDDVRTE  101 (164)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             eEEEeeccccccchhhhHhhHHHHHHh
Confidence            999999999999999999999987643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.5e-22  Score=128.31  Aligned_cols=99  Identities=21%  Similarity=0.337  Sum_probs=86.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      ++.+||+++|++|||||||++++..      +.+...+.+|++... ..+..++  ..+.+||++|++.+...+..+++.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~------~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   76 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ   76 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHh------CCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccc
Confidence            6789999999999999999999999      888888888888654 3455555  678999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +|++++|||++++++|+++..|+....+
T Consensus        77 ~~~~ilv~d~~~~~sf~~i~~~~~~~~~  104 (183)
T d1mh1a_          77 TDVSLICFSLVSPASFENVRAKWYPEVR  104 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             cceeeeeeccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999886666554

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.2e-22  Score=124.69  Aligned_cols=97  Identities=28%  Similarity=0.386  Sum_probs=84.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+++||||||++++..      +.+...+.++.+..  ......++  ..+.+||++|++.+..++..+++.+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~   77 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   77 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCC
Confidence            48999999999999999999999      77777777666654  34555666  6899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      |++++|||++++++|+.+..|+..+.+
T Consensus        78 d~~ilv~d~~~~~s~~~~~~~~~~~~~  104 (166)
T d1z0fa1          78 AGALMVYDITRRSTYNHLSSWLTDARN  104 (166)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cEEEEEeccCchHHHHHHHHHHHHHHh
Confidence            999999999999999999999988754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6.2e-22  Score=128.29  Aligned_cols=97  Identities=27%  Similarity=0.508  Sum_probs=85.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+++||||||++++..      +.+...+.++.+...  ..+.+++  ..+.+||++|++++..++..+++++
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a   79 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSD------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGS   79 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhh------CCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccC
Confidence            58999999999999999999999      788888888887654  3455665  6789999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      +++++|||+++++++..+..|+..+..
T Consensus        80 ~~~i~v~d~t~~~s~~~~~~~~~~~~~  106 (194)
T d2bcgy1          80 HGIIIVYDVTDQESFNGVKMWLQEIDR  106 (194)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeCcchhhhhhHhhhhhhhhh
Confidence            999999999999999999998887753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=8.8e-22  Score=126.18  Aligned_cols=97  Identities=24%  Similarity=0.414  Sum_probs=84.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      +.||+++|+++||||||++++..      +++++.+.||.+.. ...+..++  ..+.+||++|++.+...+..+++.+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   75 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD   75 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh------CCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhh
Confidence            57999999999999999999999      88888888988754 34455555  78899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++++|||+++++||+.+..|+.....
T Consensus        76 ~~ilv~d~~~~~Sf~~~~~~~~~~~~  101 (179)
T d1m7ba_          76 AVLICFDISRPETLDSVLKKWKGEIQ  101 (179)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             hhheeeecccCCCHHHHHHHHHHHHh
Confidence            99999999999999999987776553

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-21  Score=125.02  Aligned_cols=98  Identities=27%  Similarity=0.415  Sum_probs=85.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE--EECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+++||||||++++..      +.+...+.++.+......  ..++  ..+.+||++|++++..++..+++.+
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   78 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIE------KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA   78 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhC
Confidence            48999999999999999999999      788888888887765433  3334  6799999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++++|||.+++++++++..|+..+...
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~  106 (174)
T d2bmea1          79 AGALLVYDITSRETYNALTNWLTDARML  106 (174)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             CEEEEEEecccchhHHHHhhhhcccccc
Confidence            9999999999999999999999987653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.4e-22  Score=129.10  Aligned_cols=97  Identities=26%  Similarity=0.480  Sum_probs=62.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+++||||||++++..      +.+...+.++.+...  ..+..++  ..+.+||++|++.+..++..+++.+
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~   79 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSE------DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   79 (173)
T ss_dssp             EEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCC
Confidence            58999999999999999999998      777778778877653  4566666  6788899999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      |++++|||++++.+++.+..|+..+..
T Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~  106 (173)
T d2fu5c1          80 MGIMLVYDITNEKSFDNIRNWIRNIEE  106 (173)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHhhh
Confidence            999999999999999999999888753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-21  Score=124.14  Aligned_cols=98  Identities=31%  Similarity=0.575  Sum_probs=75.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-CCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+||+++|+++||||||++++..      +++.. .+.++.+.+..  .+...+  ..+.+||++|++.+..++..++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~   79 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD   79 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcC
Confidence            68999999999999999999998      66543 44556666544  355556  678999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +|++++|||+++++++..+..|+.++...
T Consensus        80 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  108 (170)
T d2g6ba1          80 AHALLLLYDVTNKASFDNIQAWLTEIHEY  108 (170)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             CceeEEEecCCcccchhhhhhhhhhhhhc
Confidence            99999999999999999999998876543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.2e-22  Score=128.12  Aligned_cols=102  Identities=23%  Similarity=0.445  Sum_probs=86.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC------------eEEEEEeCCCCccch
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN------------SKLVFWDLGGQPGLR   82 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~------------~~~~~~D~~g~~~~~   82 (128)
                      .+||+++|+++||||||++++.+      +.+.+.+.++.+..+  ..+.+++            .++.+||++|++.++
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~   78 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTD------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   78 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC------SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhc------CCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhH
Confidence            48999999999999999999998      777777777766543  2332221            579999999999999


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICK  124 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~  124 (128)
                      .++..+++++|++++|||++++++|+.+..|+.++.......
T Consensus        79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  120 (186)
T d2f7sa1          79 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE  120 (186)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTT
T ss_pred             HHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCC
Confidence            999999999999999999999999999999999887665433

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-21  Score=124.13  Aligned_cols=98  Identities=27%  Similarity=0.389  Sum_probs=83.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|+++||||||++++.+      +.+...+.++.+..  ...+..++  ..+.+||++|++.+...+..+++.+
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~   77 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGA   77 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhcc
Confidence            58999999999999999999999      77777777666644  34556666  6789999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++++|||+++++||+.+..|+.++...
T Consensus        78 ~~~i~v~d~~~~~S~~~~~~~~~~i~~~  105 (175)
T d2f9la1          78 VGALLVYDIAKHLTYENVERWLKELRDH  105 (175)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             CeEEEEEECCCcccchhHHHHHHHHHHh
Confidence            9999999999999999999999888653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.1e-21  Score=121.91  Aligned_cols=92  Identities=21%  Similarity=0.293  Sum_probs=76.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      -+.+||+++|+++||||||++++..      +.+... .++.+..+ ..+.+++  ..+.+||++|+..+     .|++.
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~------~~f~~~-~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~   70 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLT------GSYQVL-EKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGW   70 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHH------SCCCCC-CCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHh------CCCCCc-CCccceeEEEEeecCceEEEEEEeeccccccc-----ccccc
Confidence            3689999999999999999999999      666543 45554443 4566777  77999999998764     37799


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFF  118 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~  118 (128)
                      +|++++|||+++++||+++..|+.++.
T Consensus        71 ad~~ilVfd~~~~~Sf~~~~~~~~~i~   97 (175)
T d2bmja1          71 ADAVIFVFSLEDENSFQAVSRLHGQLS   97 (175)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             cceeEEEeecccchhhhhhHHHHHHHH
Confidence            999999999999999999999988874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3e-21  Score=121.75  Aligned_cols=105  Identities=27%  Similarity=0.510  Sum_probs=86.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchh-hHHHhhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRS-IWEKYYE   90 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~   90 (128)
                      +.+||+++|+++||||||++++..      ++++..+.++.+...  ....+..  ..+.+||.+|...+.. .+..+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCA------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR   74 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHh------CCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeec
Confidence            468999999999999999999999      888778877777543  3444444  7799999999887654 5678899


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      ++|++++|||++++++|+++..|+.++.......+.
T Consensus        75 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~  110 (165)
T d1z06a1          75 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI  110 (165)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCC
T ss_pred             CCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCC
Confidence            999999999999999999999999998765443333

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4.4e-21  Score=122.05  Aligned_cols=97  Identities=28%  Similarity=0.440  Sum_probs=71.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE--ECC---eEEEEEeCCCCccchhhHHHhhhc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--VSN---SKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~--~~~---~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+||+++|+++||||||++++..      +++...+.++.+.......  ..+   ..+.+||++|++.+...+..+++.
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   75 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVN------DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG   75 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH------SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTT
T ss_pred             eEEEEEECCCCcCHHHHHHHHHc------CCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhc
Confidence            47999999999999999999999      7777777777765433222  232   678999999999999999999999


Q ss_pred             cCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           92 AHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      ++++++|||++++.+|+.+..|+.++..
T Consensus        76 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~  103 (175)
T d1ky3a_          76 ADCCVLVYDVTNASSFENIKSWRDEFLV  103 (175)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cceEEEEeecccccccchhhhcchhhhh
Confidence            9999999999999999999999998864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.6e-21  Score=122.48  Aligned_cols=97  Identities=26%  Similarity=0.366  Sum_probs=79.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|++|||||||++++.+      +++...+.++.+..  .......+  ..+.+||++|++.+..++..+++.+
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   76 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   76 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH------SCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             eEEEEEECCCCcCHHHHHHHHhc------CCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhcc
Confidence            47999999999999999999999      77776666655543  23344444  6889999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      |++++|||++++++|+++..|+.++.+
T Consensus        77 d~~ilv~d~~~~~sf~~~~~~~~~~~~  103 (173)
T d2a5ja1          77 AGALLVYDITRRETFNHLTSWLEDARQ  103 (173)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             CEEEEEEeecChHHHHhHHHHHHHHHH
Confidence            999999999999999999999988755

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.3e-20  Score=117.98  Aligned_cols=99  Identities=20%  Similarity=0.432  Sum_probs=83.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~   90 (128)
                      .+.+||+++|+++||||||++++..      +++...+.+|.+...  ......+  ..+.+||++|.......+..++.
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   77 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR   77 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh------CCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhh
Confidence            4678999999999999999999999      888888888887653  3444555  67889999999999999999999


Q ss_pred             ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075           91 EAHAVVFVIDAACPSRFEDSKTALGKFFG  119 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~  119 (128)
                      .++++++++|.+++.+++.+..|++++..
T Consensus        78 ~~~~~i~~~d~~~~~s~~~~~~~~~~i~~  106 (174)
T d1wmsa_          78 GSDCCLLTFSVDDSQSFQNLSNWKKEFIY  106 (174)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ccceEEEEEeeecccccchhhhHHHHHHH
Confidence            99999999999999999999999988754

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.4e-20  Score=120.74  Aligned_cols=98  Identities=24%  Similarity=0.414  Sum_probs=85.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE--EECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   92 (128)
                      .+||+++|.++||||||++++.+      +++...+.+|.+.+....  ...+  ..+.+||++|...+...+..++..+
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   75 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA   75 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCc
Confidence            47999999999999999999999      888888889988765433  3333  7899999999999988889999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075           93 HAVVFVIDAACPSRFEDSKTALGKFFGM  120 (128)
Q Consensus        93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~  120 (128)
                      +++++++|.+++.+++.+..|+.++...
T Consensus        76 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~  103 (184)
T d1vg8a_          76 DCCVLVFDVTAPNTFKTLDSWRDEFLIQ  103 (184)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             cEEEEeecccchhhhhcchhhHHHHHHH
Confidence            9999999999999999999999887553

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.9e-20  Score=120.39  Aligned_cols=99  Identities=19%  Similarity=0.371  Sum_probs=81.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +++||+++|+.|||||||++++..      +     ..++.+.....+...+..+.+||++|++.++..+..|++.++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~------~-----~~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~   69 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKI------I-----HEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAI   69 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH------H-----HSCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhh------C-----CCCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCcee
Confidence            578999999999999999999988      3     34566777778888899999999999999999999999999999


Q ss_pred             EEEEECCCcccH----------HHHHHHHHHHhcCccccc
Q 033075           96 VFVIDAACPSRF----------EDSKTALGKFFGMRICKE  125 (128)
Q Consensus        96 v~v~d~~~~~s~----------~~~~~~l~~~~~~~~~~~  125 (128)
                      ++|+|+++.+++          .+...++..++.+....+
T Consensus        70 i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~  109 (195)
T d1svsa1          70 IFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD  109 (195)
T ss_dssp             EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTT
T ss_pred             eeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCC
Confidence            999999988765          334455556655544433

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=8e-20  Score=117.81  Aligned_cols=102  Identities=22%  Similarity=0.404  Sum_probs=85.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +++||+++|+.+||||||++++..      +.+  .+.||+|.+...+......+.+||++|++.++..+..+++.++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~------~~~--~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   72 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRI------IHG--SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSI   72 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH------HTS--SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhC------CCC--CCCceeeEEEEEEeccceeeeecccccccccccccccccccccee
Confidence            579999999999999999999988      555  356999999888888889999999999999999999999999999


Q ss_pred             EEEEECCCccc----------HHHHHHHHHHHhcCccccc
Q 033075           96 VFVIDAACPSR----------FEDSKTALGKFFGMRICKE  125 (128)
Q Consensus        96 v~v~d~~~~~s----------~~~~~~~l~~~~~~~~~~~  125 (128)
                      ++++|.++..+          +.+...++..++.+....+
T Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~  112 (200)
T d2bcjq2          73 MFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN  112 (200)
T ss_dssp             EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSS
T ss_pred             eEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccC
Confidence            99999987643          4455555666665554443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.81  E-value=2.5e-19  Score=113.70  Aligned_cols=117  Identities=32%  Similarity=0.647  Sum_probs=92.5

Q ss_pred             hhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075            2 FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus         2 ~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      |.+++++|. ++.++.+||+++|.+|||||||++++..      +++. ...++.+.........+.++.+||.++.+..
T Consensus         1 ~~~~~~~~~-~~~~k~~kI~vvG~~~~GKSsLi~rl~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   72 (177)
T d1zj6a1           1 GILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM------NEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESL   72 (177)
T ss_dssp             CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT------TSCE-EEECCSCSSCEEEEETTEEEEEEECCC----
T ss_pred             ChhHHHHHH-HhCCCeEEEEEECCCCCCHHHHHHHHhc------CCCC-ccccccceeEEEEeecceEEEEecccccccc
Confidence            456788884 5678889999999999999999999998      4443 3345555555667778899999999999999


Q ss_pred             hhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      +..+..++..++++++++|.++.++++....+...........+.
T Consensus        73 ~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~  117 (177)
T d1zj6a1          73 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA  117 (177)
T ss_dssp             CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTC
T ss_pred             ccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccce
Confidence            999999999999999999999999999998888877766554443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.81  E-value=4.3e-19  Score=110.56  Aligned_cols=102  Identities=30%  Similarity=0.649  Sum_probs=83.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~   97 (128)
                      +||+++|++|||||||++++..      +++......+ .............+.+||++|...+...+..+++.++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   73 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKL------GEIVTTIPTI-GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH------HCSSCCCCCS-SCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCccccce-eeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEE
Confidence            5899999999999999999998      4443333222 22334555666999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075           98 VIDAACPSRFEDSKTALGKFFGMRICKER  126 (128)
Q Consensus        98 v~d~~~~~s~~~~~~~l~~~~~~~~~~~~  126 (128)
                      ++|++++.++..+..|+.++.........
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (160)
T d1r8sa_          74 VVDSNDRERVNEAREELMRMLAEDELRDA  102 (160)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             EEEecChHHHHHHHHHHHHHHHhhcccCc
Confidence            99999999999999999999877655443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.9e-19  Score=112.92  Aligned_cols=106  Identities=16%  Similarity=0.205  Sum_probs=78.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcce--EEEEEEECC--eEEEEEeCCCCccc-hhhHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGL--NIGRIEVSN--SKLVFWDLGGQPGL-RSIWEKYY   89 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~-~~~~~~~~   89 (128)
                      .-+||+++|++++|||||++++..      ..+. ....++.+.  ....+.+++  ..+.+||+++.... +.++..++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~   75 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAG------VHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM   75 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC------CCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCC
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHh------CcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccc
Confidence            468999999999999999999987      3332 223344443  334566666  56789998764322 23567788


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +.+|++++|||++++++|+++..|+.++.......+.|
T Consensus        76 ~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~p  113 (172)
T d2g3ya1          76 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP  113 (172)
T ss_dssp             CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC
T ss_pred             cccceeeeeecccccchhhhhhhhhhhhhhccccCCce
Confidence            99999999999999999999999999998776555544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=5.5e-19  Score=116.46  Aligned_cols=102  Identities=21%  Similarity=0.474  Sum_probs=89.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +.+||+++|++|||||||++++..      +    ...||+|+....+.+++..+.+||++|++.++..|..+++.++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~------~----~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRI------L----HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHH------H----HCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhc------C----CcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccce
Confidence            578999999999999999999987      3    335899999888999999999999999999999999999999999


Q ss_pred             EEEEECCCc----------ccHHHHHHHHHHHhcCcccccCC
Q 033075           96 VFVIDAACP----------SRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        96 v~v~d~~~~----------~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|.++.          .++.+...++..+++++...+.|
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~  116 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS  116 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCc
Confidence            999999864          35677778888888887766554

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=8.1e-19  Score=113.25  Aligned_cols=103  Identities=21%  Similarity=0.420  Sum_probs=81.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +.+||+++|+++||||||++++..         ...+.||+|+....+..+...+.+||++|++.++..+..+++.++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~f---------~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~   71 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMRI---------IHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSI   71 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH---------HHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc---------CCCCCCeeeeEEEEEeeeeeeeeeecccceeeeccccccccccccee
Confidence            468999999999999999999943         12456899999899999999999999999999999999999999999


Q ss_pred             EEEEECCCcc----------cHHHHHHHHHHHhcCcccccCC
Q 033075           96 VFVIDAACPS----------RFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        96 v~v~d~~~~~----------s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++|.++..          ++++...++..++++....+.|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p  113 (200)
T d1zcba2          72 LFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS  113 (200)
T ss_dssp             EEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             EEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCce
Confidence            9999999754          3577778888888877665544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.7e-17  Score=103.19  Aligned_cols=102  Identities=35%  Similarity=0.650  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v   98 (128)
                      ||+++|++|||||||++++..      +.+. .+.||.+.........+....+||+++...+...+..++..+++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN------DRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   74 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH------SCCC-CCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhC------CCCC-eeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeee
Confidence            899999999999999999998      5543 567888888888888889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           99 IDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      +|.++..++.....|+..........+.|
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (166)
T d2qtvb1          75 VDAADPERFDEARVELDALFNIAELKDVP  103 (166)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCTTTTTCC
T ss_pred             ccccchhhhhhhhHHHHhhhhhhccCCce
Confidence            99999999999999988887776655543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.71  E-value=2.6e-16  Score=98.33  Aligned_cols=103  Identities=36%  Similarity=0.661  Sum_probs=88.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   95 (128)
                      +.+||+++|++|||||||++++..      +.+.. ..++.+........++..+.+||.++..........++..++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV------GEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAV   76 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH------SSCCC-CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC------CCCcc-eecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhh
Confidence            579999999999999999999998      55543 45677777777788889999999999999988888999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075           96 VFVIDAACPSRFEDSKTALGKFFGMRICKE  125 (128)
Q Consensus        96 v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~  125 (128)
                      ++++|+.+..++.....++..........+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (169)
T d1upta_          77 IYVVDSCDRDRIGISKSELVAMLEEEELRK  106 (169)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCGGGTT
T ss_pred             hhhhhhhhcchhhhccchhhhhhhhhcccc
Confidence            999999999999999888877776655443

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.71  E-value=6.4e-17  Score=102.59  Aligned_cols=107  Identities=29%  Similarity=0.464  Sum_probs=84.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   93 (128)
                      .++..||+++|++|||||||++++..      +.+. ...++.+.+...+..++..+..||+.+...+...+..+.+..+
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKD------DRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAIN   82 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSC------C-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhC------CCCc-ceecccccceeEEEecccccccccccchhhhhhHHhhhhcccc
Confidence            47889999999999999999999987      4443 3346666666778888899999999999988888889999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075           94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH  127 (128)
Q Consensus        94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~  127 (128)
                      ++++++|++++..+.+...++..........+.|
T Consensus        83 ~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~  116 (186)
T d1f6ba_          83 GIVFLVDCADHERLLESKEELDSLMTDETIANVP  116 (186)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC
T ss_pred             eeeeeeeccCccchHHHHHHHHHhhcccccCCCc
Confidence            9999999999999999998888887776655554

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=5.1e-16  Score=100.74  Aligned_cols=94  Identities=30%  Similarity=0.430  Sum_probs=74.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC---CeEEEEEeCCCCccch-hhHHHhhhccCE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGLR-SIWEKYYEEAHA   94 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~-~~~~~~~~~~~~   94 (128)
                      +|+++|+++||||||++++..      +.+... .++.+.+...+.+.   +..+.+||++|++.++ ..+..+++.+++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~------~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   74 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT------GQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   74 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH------SCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHc------CCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccc
Confidence            689999999999999999998      555433 46777776666654   3789999999999885 466788899999


Q ss_pred             EEEEEECCCccc-HHHHHHHHHHHhc
Q 033075           95 VVFVIDAACPSR-FEDSKTALGKFFG  119 (128)
Q Consensus        95 ~v~v~d~~~~~s-~~~~~~~l~~~~~  119 (128)
                      +++|+|+++..+ +....+++.+++.
T Consensus        75 ~i~v~D~~d~~~~~~~~~~~l~~~l~  100 (207)
T d2fh5b1          75 VVFVVDSAAFQREVKDVAEFLYQVLI  100 (207)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEcccccccHHHHHHHHHHHHH
Confidence            999999999766 4566666666543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=1.3e-14  Score=92.04  Aligned_cols=88  Identities=26%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch--------hhHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIWEKY   88 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~   88 (128)
                      .-.|+++|.+|||||||++++++  .+. .........|...........+.++.+||+||.....        .....+
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~--~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLG--VKV-APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT--SCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC--CCc-eeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccc
Confidence            34799999999999999999997  221 1112223334445556677788999999999965432        223345


Q ss_pred             hhccCEEEEEEECCCcccH
Q 033075           89 YEEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~  107 (128)
                      ++++|++++|+|++++...
T Consensus        82 ~~~ad~il~v~D~~~~~~~  100 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTP  100 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCH
T ss_pred             cccccceeeeechhhhhcc
Confidence            6789999999999886554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=8.3e-15  Score=91.15  Aligned_cols=91  Identities=27%  Similarity=0.305  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc--------cc-hhhHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP--------GL-RSIWEKY   88 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--------~~-~~~~~~~   88 (128)
                      +||+++|.++||||||+++|++.  +. .........+.......+...+..+.+||+||..        .. .......
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE--DR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH--TB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC--Cc-eeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHH
Confidence            58999999999999999999872  21 1111122223333345677788999999999932        11 1223344


Q ss_pred             hhccCEEEEEEECCCcccHHHHH
Q 033075           89 YEEAHAVVFVIDAACPSRFEDSK  111 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~~s~~~~~  111 (128)
                      +..+|++++|+|.+++...+...
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~~  100 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDRK  100 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH
T ss_pred             HHhCCEEEEEEeCCCCcchhhhh
Confidence            68899999999999988766553

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=6.2e-14  Score=87.17  Aligned_cols=97  Identities=21%  Similarity=0.211  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh--------hHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYY   89 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~   89 (128)
                      +||+++|.++||||||+++++......   .......+.......+...+.++.++|++|......        ....++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAI---VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSC---CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceE---eecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHH
Confidence            699999999999999999999721111   111112233333456778889999999999544321        233456


Q ss_pred             hccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075           90 EEAHAVVFVIDAACPSRFEDSKTALGKF  117 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~  117 (128)
                      ..+|++++++|..+..+++....|...+
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~  106 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFI  106 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHH
T ss_pred             Hhccccceeeccccccchhhhhhhhhhh
Confidence            8899999999999988776665544433

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.4e-14  Score=93.50  Aligned_cols=94  Identities=19%  Similarity=0.324  Sum_probs=68.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhh----hcc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYY----EEA   92 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~----~~~   92 (128)
                      +..|+++|+++||||||+|+|.+      .++...  .|.......+..++..+.+||+||.+.++..+..++    ..+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~------~~~~~~--tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~   74 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTT------DSVRPT--VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV   74 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH------SSCCCB--CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC------CCCCCe--EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhc
Confidence            45899999999999999999998      433222  222223345556668899999999998766655554    456


Q ss_pred             CEEEEEEECCC-cccHHHHHHHHHHHh
Q 033075           93 HAVVFVIDAAC-PSRFEDSKTALGKFF  118 (128)
Q Consensus        93 ~~~v~v~d~~~-~~s~~~~~~~l~~~~  118 (128)
                      +.+++++|..+ ..+++.+..|+.++.
T Consensus        75 ~~~i~~vd~~~~~~~~~~~~~~l~~~~  101 (209)
T d1nrjb_          75 KGLIFMVDSTVDPKKLTTTAEFLVDIL  101 (209)
T ss_dssp             EEEEEEEETTSCTTCCHHHHHHHHHHH
T ss_pred             cccceEEEEecccccHHHHHHHHHHHH
Confidence            88899999775 677788888776554

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=2.1e-13  Score=88.40  Aligned_cols=96  Identities=19%  Similarity=0.072  Sum_probs=72.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCC--CCCCCCC-----------CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV--EGLPPDR-----------IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~--~~~~~~~-----------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      +++++|+++|..++|||||+++|+......  .+.....           ..-|+......+.+++.++.+.|+||+..|
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence            367899999999999999999997532211  0111100           023455556677888899999999999999


Q ss_pred             hhhHHHhhhccCEEEEEEECCCcccHHHH
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                      .......++.+|++|+|+|+.+.-..+..
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~  109 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTR  109 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHH
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHH
Confidence            88888888999999999999887665443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=1.7e-12  Score=82.32  Aligned_cols=88  Identities=24%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc------------chh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG------------LRS   83 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~------------~~~   83 (128)
                      ..+||+++|.+++|||||++++++  .+. .........+.......+.+++..+.++|++|...            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~--~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILN--KER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT--STT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC--CCc-ceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhH
Confidence            468999999999999999999987  111 00111222223333456677888999999998532            223


Q ss_pred             hHHHhhhccCEEEEEEECCCccc
Q 033075           84 IWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      ....+++.+|++++|+|++....
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~  106 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGIT  106 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC
T ss_pred             HHHHHHhcCCEEEEeecccccch
Confidence            44556789999999999987543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.37  E-value=2e-12  Score=81.96  Aligned_cols=93  Identities=19%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   91 (128)
                      .+.++|+++|.+++|||||+++|+....... ...+..  ...+.......+...+..+.++|++|...+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            4678999999999999999999986211100 000000  0011111223455667899999999999998888888999


Q ss_pred             cCEEEEEEECCCcccH
Q 033075           92 AHAVVFVIDAACPSRF  107 (128)
Q Consensus        92 ~~~~v~v~d~~~~~s~  107 (128)
                      +|++++++|+++....
T Consensus        83 ~d~~ilv~d~~~g~~~   98 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKT   98 (179)
T ss_dssp             CCEEEEEEETTTCSCH
T ss_pred             ccccccccccccccch
Confidence            9999999999986543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=4.1e-12  Score=80.28  Aligned_cols=82  Identities=23%  Similarity=0.365  Sum_probs=54.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE-CCeEEEEEeCCCCcc-------chhhHHHhhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPG-------LRSIWEKYYE   90 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~   90 (128)
                      .|+++|.++||||||+|+|++.....    .+....+.......... .+..+.+||+||...       ........+.
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~   78 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKI----APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA   78 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEE----CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCce----eccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHH
Confidence            48999999999999999998621111    11222333334433333 347899999999332       2223345568


Q ss_pred             ccCEEEEEEECCCc
Q 033075           91 EAHAVVFVIDAACP  104 (128)
Q Consensus        91 ~~~~~v~v~d~~~~  104 (128)
                      .++++++++|....
T Consensus        79 ~~~~~~~~~d~~~~   92 (180)
T d1udxa2          79 RTRVLLYVLDAADE   92 (180)
T ss_dssp             SSSEEEEEEETTSC
T ss_pred             hhhhhhhhcccccc
Confidence            89999999998653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.34  E-value=1.6e-11  Score=82.39  Aligned_cols=95  Identities=19%  Similarity=0.168  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCC-------CC-------CCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGL-------PP-------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-------~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   84 (128)
                      +|+++|..++|||||+.+++.........       ..       .....|+......+.+++.++.++|+||+.+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            68999999999999999997633221110       00       01123555556788899999999999999999999


Q ss_pred             HHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTA  113 (128)
Q Consensus        85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~  113 (128)
                      ....++.+|++|+|+|..+.-.......|
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~  112 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTERAW  112 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred             hhhhhcccCceEEEeeccCCccchhHHHH
Confidence            89999999999999999987665554443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.34  E-value=2.4e-11  Score=81.08  Aligned_cols=101  Identities=12%  Similarity=0.053  Sum_probs=65.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc-------hhhHHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEK   87 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~   87 (128)
                      ...++|+++|.+|+|||||+|.+++  .+.. ........|..........++.++.++||||-...       ......
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg--~~~~-~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG--ERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT--SCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC--CCce-eecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHH
Confidence            5789999999999999999999997  3221 11122234455556677788999999999995322       111122


Q ss_pred             h--hhccCEEEEEEECCCcc---cHHHHHHHHHHHh
Q 033075           88 Y--YEEAHAVVFVIDAACPS---RFEDSKTALGKFF  118 (128)
Q Consensus        88 ~--~~~~~~~v~v~d~~~~~---s~~~~~~~l~~~~  118 (128)
                      +  ....+++++|++++...   .-..+..++.+++
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~f  142 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSF  142 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHc
Confidence            2  24578899998877532   2233334555544

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=2.5e-11  Score=75.95  Aligned_cols=86  Identities=24%  Similarity=0.246  Sum_probs=54.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc---------chhhHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKYY   89 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~   89 (128)
                      .|+++|.+|||||||+++|++  .+. .........|.......+...+..+.+||++|...         +......++
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~--~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK--KKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC--CCc-ceecccCceeeccccccccccccccccccccceeeeecccccccccccccccc
Confidence            689999999999999999986  111 01111222333333456677789999999998321         222334456


Q ss_pred             hccCEEEEEEECCCcccH
Q 033075           90 EEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        90 ~~~~~~v~v~d~~~~~s~  107 (128)
                      ..+|+++++.|.++....
T Consensus        79 ~~ad~i~~~~~~~~~~~~   96 (171)
T d1mkya1          79 READLVLFVVDGKRGITK   96 (171)
T ss_dssp             TTCSEEEEEEETTTCCCH
T ss_pred             ccCcEEEEeecccccccc
Confidence            789999999998765544

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=7.1e-12  Score=79.14  Aligned_cols=78  Identities=21%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc---------------chh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------------LRS   83 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------------~~~   83 (128)
                      .|+++|.+|||||||+|++.+.....    ......|...  ..+...  ++.++|+||...               +..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~----~~~~g~T~~~--~~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~   73 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRR----GKRPGVTRKI--IEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   73 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSS----SSSTTCTTSC--EEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee----eCCCCEeecc--cccccc--cceecccCCceeccccccccccccchhhhh
Confidence            58999999999999999998721111    1111123332  233333  467899999421               111


Q ss_pred             hHHHhhhccCEEEEEEECCCc
Q 033075           84 IWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ......+.+|++++|+|.++.
T Consensus        74 ~~~~~~~~~d~~~~vvD~~~~   94 (184)
T d2cxxa1          74 FIEDNAKNIDVAVLVVDGKAA   94 (184)
T ss_dssp             HHHHHGGGCCEEEEEEETTHH
T ss_pred             hhhhcccccchheeeeecccc
Confidence            223445789999999998754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=3e-11  Score=81.28  Aligned_cols=98  Identities=13%  Similarity=0.051  Sum_probs=73.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC------------CCC--CCCcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------------LPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~------------~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   81 (128)
                      +.-+|+++|..++|||||+.+++.....+..            ..+  .+...|+......+++++..+.+.||||..+|
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence            3447999999999999999999763222110            000  11122444556788899999999999999999


Q ss_pred             hhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA  113 (128)
Q Consensus        82 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~  113 (128)
                      .......++.+|++|+|+|..+.-.....+.|
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w  116 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW  116 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHH
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHH
Confidence            99989999999999999999998776655544

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.28  E-value=1.1e-11  Score=79.66  Aligned_cols=93  Identities=14%  Similarity=0.044  Sum_probs=65.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCC-------CCcC----CcceEEEEEEECCeEEEEEeCCCCccch
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPD-------RIVP----TVGLNIGRIEVSNSKLVFWDLGGQPGLR   82 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~~~~-------~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~   82 (128)
                      +++++|+++|..++|||||+++++....+. ......       ....    |+......+...+..+.+.|+||+..|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            367899999999999999999997622111 011100       0011    2222233445567899999999999998


Q ss_pred             hhHHHhhhccCEEEEEEECCCcccH
Q 033075           83 SIWEKYYEEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        83 ~~~~~~~~~~~~~v~v~d~~~~~s~  107 (128)
                      ......+..+|++++|+|+.+.-.-
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~  105 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMP  105 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCH
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCch
Confidence            8777888999999999999986543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.27  E-value=5.2e-12  Score=80.05  Aligned_cols=84  Identities=26%  Similarity=0.303  Sum_probs=54.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCc----cch---hhHHHhhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQP----GLR---SIWEKYYE   90 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~----~~~---~~~~~~~~   90 (128)
                      +|+++|.+|||||||+|+|.+....    ..+....|.........+.+ ..+.+||+||..    ...   ......+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~----~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~   78 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPK----IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE   78 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE----ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCc----eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH
Confidence            6899999999999999999872111    11222344444455555544 789999999942    111   12234456


Q ss_pred             ccCEEEEEEECCCccc
Q 033075           91 EAHAVVFVIDAACPSR  106 (128)
Q Consensus        91 ~~~~~v~v~d~~~~~s  106 (128)
                      .++.++++++....+.
T Consensus        79 ~~~~i~~~v~~~~~~~   94 (185)
T d1lnza2          79 RTRVIVHVIDMSGLEG   94 (185)
T ss_dssp             HCCEEEEEEESSCSSC
T ss_pred             Hhhhhhheeeeccccc
Confidence            7899999998776543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=9.3e-12  Score=83.97  Aligned_cols=83  Identities=23%  Similarity=0.335  Sum_probs=57.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCCCc
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP   79 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~   79 (128)
                      .+||.+||.|+||||||+++++....+.    .+..+.|+..+...+.+.+                 .++++.|+||.-
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~----~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi   77 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEA----ANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV   77 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC----------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCcc----ccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccC
Confidence            4799999999999999999999832222    1233455555555565554                 258899999932


Q ss_pred             -------cchhhHHHhhhccCEEEEEEECCC
Q 033075           80 -------GLRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        80 -------~~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                             .....+...++.||+++.|+|+..
T Consensus        78 ~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~  108 (278)
T d1jala1          78 AGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (278)
T ss_dssp             TTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             CCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence                   122345677899999999998764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.25  E-value=9.3e-11  Score=79.64  Aligned_cols=86  Identities=21%  Similarity=0.344  Sum_probs=62.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG   77 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g   77 (128)
                      ...+||+++|.|+||||||++.++.  .+. ....+..+.|+..+...+.+.+                 ..+.+.|+||
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~--~~~-~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaG   84 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITK--SVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG   84 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH--STT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHC--CCC-CCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccc
Confidence            3678999999999999999999997  221 0122344556666666666654                 4789999997


Q ss_pred             C-------ccchhhHHHhhhccCEEEEEEECCC
Q 033075           78 Q-------PGLRSIWEKYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        78 ~-------~~~~~~~~~~~~~~~~~v~v~d~~~  103 (128)
                      .       ......+...++.||+++.|+|+.+
T Consensus        85 Lv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          85 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            1       1223355667799999999999876

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.23  E-value=2e-10  Score=75.08  Aligned_cols=95  Identities=16%  Similarity=0.128  Sum_probs=66.0

Q ss_pred             hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCC--------------CCCC---------------CCcCCcceEEEEE
Q 033075           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LPPD---------------RIVPTVGLNIGRI   63 (128)
Q Consensus        13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~--------------~~~~---------------~~~~t~~~~~~~~   63 (128)
                      .++..++++++|...+|||||+.+|+........              ...+               ....+........
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            3567899999999999999999999752221100              0000               0011222223445


Q ss_pred             EECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccH
Q 033075           64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF  107 (128)
Q Consensus        64 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~  107 (128)
                      ...+..+.+.|+||+..|-.....-...+|++++|+|+.+.-.-
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~  128 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT  128 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCccc
Confidence            55668999999999999988777788999999999999875433

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.23  E-value=9.7e-12  Score=81.58  Aligned_cols=85  Identities=21%  Similarity=0.259  Sum_probs=57.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE----------------EEEECCeEEEEEeCCCCccchh
Q 033075           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----------------RIEVSNSKLVFWDLGGQPGLRS   83 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~----------------~~~~~~~~~~~~D~~g~~~~~~   83 (128)
                      |+++|.+++|||||+++++...... .+. .......+....                .+..++.++.++|+||+..|..
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVAS-REA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSC-C-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchh-eec-Cceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            9999999999999999998732111 000 000010111100                1223447899999999999877


Q ss_pred             hHHHhhhccCEEEEEEECCCccc
Q 033075           84 IWEKYYEEAHAVVFVIDAACPSR  106 (128)
Q Consensus        84 ~~~~~~~~~~~~v~v~d~~~~~s  106 (128)
                      .....+..+|++++|+|+.+.-.
T Consensus        86 ~~~~~~~~~D~~ilVvda~~g~~  108 (227)
T d1g7sa4          86 LRKRGGALADLAILIVDINEGFK  108 (227)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCC
T ss_pred             cchhcccccceEEEEEecccCcc
Confidence            77777889999999999987543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.20  E-value=9.8e-11  Score=74.90  Aligned_cols=92  Identities=22%  Similarity=0.269  Sum_probs=60.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-CCCCCCcCCcceEEEEEE---------------------ECCeEEE
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRIVPTVGLNIGRIE---------------------VSNSKLV   71 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~-~~~~~~~~t~~~~~~~~~---------------------~~~~~~~   71 (128)
                      +++.++|+++|..++|||||+++|+....+... ..........+.......                     .....+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            568899999999999999999999862221100 000000001111111110                     1114589


Q ss_pred             EEeCCCCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075           72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS  105 (128)
Q Consensus        72 ~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~  105 (128)
                      +.|+||+..|.......+..+|++++++|+.+.-
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~  115 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPC  115 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhh
Confidence            9999999999888888889999999999988853

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=5.1e-11  Score=84.08  Aligned_cols=86  Identities=17%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-CCcCCcceEEEEEEEC-CeEEEEEeCCCCccchhh-----HHH
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSI-----WEK   87 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~-----~~~   87 (128)
                      +..++|+++|.+|+|||||+|.|.+....-.+..+. ....|...  ..+... +.++.+||+||.......     ...
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccCCCeEEEEeCCCcccccccHHHHHHHh
Confidence            357999999999999999999998732211111111 11122221  122222 356889999995543222     222


Q ss_pred             hhhccCEEEEEEECC
Q 033075           88 YYEEAHAVVFVIDAA  102 (128)
Q Consensus        88 ~~~~~~~~v~v~d~~  102 (128)
                      .+..+|.++++.|..
T Consensus       132 ~~~~~d~~l~~~~~~  146 (400)
T d1tq4a_         132 KFYEYDFFIIISATR  146 (400)
T ss_dssp             TGGGCSEEEEEESSC
T ss_pred             hhhcceEEEEecCCC
Confidence            346788888887644

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=2.4e-11  Score=83.25  Aligned_cols=82  Identities=20%  Similarity=0.275  Sum_probs=44.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE----E--------------------ECCeEEEEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI----E--------------------VSNSKLVFW   73 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~----~--------------------~~~~~~~~~   73 (128)
                      ++|+++|.|+||||||+|++++...+. +   +..+.|+..+.+..    +                    ..+.++.++
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v-~---nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   76 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEI-A---NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMV   76 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEE
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCch-h---cCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEE
Confidence            489999999999999999998732222 1   12223333332221    1                    111569999


Q ss_pred             eCCCCccc----hhhHH---HhhhccCEEEEEEECCC
Q 033075           74 DLGGQPGL----RSIWE---KYYEEAHAVVFVIDAAC  103 (128)
Q Consensus        74 D~~g~~~~----~~~~~---~~~~~~~~~v~v~d~~~  103 (128)
                      |+||.-..    ..+-.   ..++.+|++++|+|+++
T Consensus        77 D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          77 DVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             ECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             ECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            99994221    11222   33478999999999874

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.09  E-value=6.3e-10  Score=71.63  Aligned_cols=90  Identities=20%  Similarity=0.250  Sum_probs=58.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC-cCCcceEEEEEEE--------------------------CC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEV--------------------------SN   67 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~t~~~~~~~~~~--------------------------~~   67 (128)
                      ++.++|+++|..++|||||+++|+.............. ....+........                          ..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            67799999999999999999999862221100000000 0001111111000                          01


Q ss_pred             eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ..+.+.|+||+..|.......+..+|++++|+|+.+.
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~g  122 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP  122 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSC
T ss_pred             EEEEEeccchHHHHHhhhhcceecccccccccccccc
Confidence            4689999999999988778888999999999999885

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.09  E-value=6.2e-11  Score=77.55  Aligned_cols=90  Identities=19%  Similarity=0.210  Sum_probs=62.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------------------------C--CCCCCCcCCcceEEEEEEECC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------G--LPPDRIVPTVGLNIGRIEVSN   67 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------------------------~--~~~~~~~~t~~~~~~~~~~~~   67 (128)
                      ++.++|+++|.-++|||||+.+|+....-..                         .  ........++.......+.++
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~   80 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   80 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence            3578999999999999999998854111000                         0  000011122223334566777


Q ss_pred             eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ..+.+.|+||+..|......-++-+|++|+|+|+.+.
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G  117 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG  117 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccC
Confidence            9999999999999999888899999999999999874

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=3.7e-10  Score=74.51  Aligned_cols=90  Identities=16%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCC----------------CCCC-----------CCCcCCcceEEEEEEECC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------------GLPP-----------DRIVPTVGLNIGRIEVSN   67 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~----------------~~~~-----------~~~~~t~~~~~~~~~~~~   67 (128)
                      +++++|+++|...+|||||+.+|+....-+.                +.+.           .+..-|+......+.+.+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            4578999999999999999999975211100                0000           011224444456778888


Q ss_pred             eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      .++.+.|+||+.+|......-...+|++|+|+|+...
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G  120 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  120 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC
Confidence            9999999999999988888888999999999998763

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=9.2e-10  Score=75.97  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=66.9

Q ss_pred             ccceeE-EEEEcCCCCCHHHHHHHHHhhccCCCC----------CCCCC--CcCCcceEEEEEEE---------------
Q 033075           14 TKTEFH-VLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPDR--IVPTVGLNIGRIEV---------------   65 (128)
Q Consensus        14 ~~~~~k-i~l~G~~~~GKTsl~~~l~~~~~~~~~----------~~~~~--~~~t~~~~~~~~~~---------------   65 (128)
                      ++..+| |+++|..++|||||+.+++...+....          ..+++  ..-|+......+.+               
T Consensus        13 ~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~   92 (341)
T d1n0ua2          13 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   92 (341)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccc
Confidence            456674 999999999999999999753221100          00011  11122222222222               


Q ss_pred             -CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075           66 -SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA  113 (128)
Q Consensus        66 -~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~  113 (128)
                       +++.+.+.||||+.+|.......++-+|++++|+|+.+.-..+....|
T Consensus        93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~  141 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL  141 (341)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH
T ss_pred             ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHH
Confidence             236699999999999999999999999999999999987665544333

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.00  E-value=6.6e-10  Score=70.68  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+|+++|.+|||||||+|+|.+
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcC
Confidence            344899999999999999999986

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.93  E-value=1.2e-09  Score=72.26  Aligned_cols=95  Identities=22%  Similarity=0.239  Sum_probs=53.3

Q ss_pred             hhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC-------------CCCCCcCCcceEEEE
Q 033075           10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-------------PPDRIVPTVGLNIGR   62 (128)
Q Consensus        10 ~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~-------------~~~~~~~t~~~~~~~   62 (128)
                      +....++.++|+++|...+|||||+.+|+.......              +.             .......++......
T Consensus        17 ~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~   96 (245)
T d1r5ba3          17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY   96 (245)
T ss_dssp             HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred             HHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc
Confidence            333456788999999999999999999954211100              00             000011122222234


Q ss_pred             EEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075           63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP  104 (128)
Q Consensus        63 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~  104 (128)
                      ....+..+.+.|+||+..|......-...+|++++|+|+.+.
T Consensus        97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G  138 (245)
T d1r5ba3          97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  138 (245)
T ss_dssp             EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             cccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCC
Confidence            445668899999999999988877888999999999999863

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=3.1e-08  Score=61.63  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=48.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce-EEEEEEECCeEEEEEeCCCCccchhh--HHHh-------
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL-NIGRIEVSNSKLVFWDLGGQPGLRSI--WEKY-------   88 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~-------   88 (128)
                      .|+++|.+|||||||+|+|.+.....   . .....+... .......+...+..+|.+|.......  ....       
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~---~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISI---T-SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEE---C-CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee---e-ccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccc
Confidence            58999999999999999999721110   0 111122222 23444556678888998886533221  1111       


Q ss_pred             hhccCEEEEEEECCCc
Q 033075           89 YEEAHAVVFVIDAACP  104 (128)
Q Consensus        89 ~~~~~~~v~v~d~~~~  104 (128)
                      ...+++++++.|..+.
T Consensus        83 ~~~~~~~l~~~d~~~~   98 (179)
T d1egaa1          83 IGDVELVIFVVEGTRW   98 (179)
T ss_dssp             CCCEEEEEEEEETTCC
T ss_pred             hhhcceeEEEEecCcc
Confidence            2356777788887653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=3.5e-07  Score=56.76  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=25.1

Q ss_pred             hhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        11 ~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++.....++|+++|.+|||||||+|++..
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            34455789999999999999999999987

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.50  E-value=3.7e-08  Score=65.86  Aligned_cols=57  Identities=25%  Similarity=0.408  Sum_probs=34.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEE-EEECCeEEEEEeCCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVSNSKLVFWDLGGQ   78 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g~   78 (128)
                      ...++++++|-|+||||||+|++..  .+.     ....+..|.+-.. ....+.++.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~--~~~-----~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAK--KNI-----AKTGDRPGITTSQQWVKVGKELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT--SCC-----C------------CCEEETTTEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhc--cce-----EEECCcccccccceEEECCCCeEEecCCCc
Confidence            4679999999999999999999997  111     1112222221110 0112356999999994

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=3.3e-06  Score=56.47  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...+|+++|..++|||||+|.+++
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhC
Confidence            345899999999999999999998

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.26  E-value=2.5e-06  Score=57.32  Aligned_cols=22  Identities=23%  Similarity=0.585  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+|+++|..++|||||+|.+++
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCHHHHHHHHhC
Confidence            4899999999999999999987

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.16  E-value=6.6e-07  Score=55.28  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +||+++|++|+|||||++.++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999999987

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=1.4e-06  Score=56.53  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -..+++|.+|||||||+|.+..
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHST
T ss_pred             CeEEEECCCCCCHHHHHHhhcc
Confidence            4679999999999999999976

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.12  E-value=9.6e-07  Score=54.20  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=24.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++..+|++.|++||||||+++.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            57889999999999999999999976

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.07  E-value=4.1e-07  Score=59.20  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -..+++|.+|||||||+|++..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCccHHHHHHhhcc
Confidence            3567999999999999999986

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.02  E-value=1.3e-06  Score=53.87  Aligned_cols=23  Identities=43%  Similarity=0.608  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -+|++.|++|+|||||++.|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999763

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=3.4e-06  Score=55.18  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++-=+++++|++|||||||++.+..
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3445799999999999999999997

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.97  E-value=2.7e-06  Score=53.25  Aligned_cols=25  Identities=32%  Similarity=0.368  Sum_probs=22.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++.+||+++|+|||||||+++.|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999976

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.96  E-value=3.9e-06  Score=53.43  Aligned_cols=21  Identities=38%  Similarity=0.482  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            578999999999999999997

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.94  E-value=2.4e-06  Score=52.14  Aligned_cols=24  Identities=38%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ..+|+++|++||||||+++.|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.92  E-value=6.3e-06  Score=53.79  Aligned_cols=37  Identities=24%  Similarity=0.504  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKL   70 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   70 (128)
                      -++++|++|||||||++.+..           ...|+.|    .+.+++..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~G-----------l~~p~~G----~I~~~G~~i   62 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG-----------IVKPDRG----EVRLNGADI   62 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT-----------SSCCSEE----EEEETTEEC
T ss_pred             EEEEECCCCChHHHHHHHHHc-----------CCCCCce----EEEECCEEC
Confidence            467999999999999999997           4445544    566666544

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.6e-06  Score=54.46  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++-=.++++|++|||||||++.+..
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhc
Confidence            3444789999999999999999997

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.91  E-value=5.5e-06  Score=54.22  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++-=.++++|++|||||||++.+..
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3455889999999999999999987

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.89  E-value=1.1e-05  Score=52.67  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++++|++|||||||++.+..
T Consensus        31 ~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            679999999999999999987

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.89  E-value=5.8e-06  Score=54.43  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|||||||++.+..
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            444799999999999999999987

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.88  E-value=5.1e-06  Score=52.25  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=23.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.++|+++|+|||||||+.+.|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999977

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.88  E-value=7.7e-06  Score=53.11  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            578999999999999998886

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.87  E-value=9.2e-06  Score=53.01  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            579999999999999999987

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=1e-05  Score=52.76  Aligned_cols=38  Identities=29%  Similarity=0.349  Sum_probs=28.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKL   70 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   70 (128)
                      =-++++|++|||||||++.+..           ...|+.|    .+.+++.++
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~G-----------l~~p~sG----~I~~~g~~i   69 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNL-----------LERPTEG----SVLVDGQEL   69 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTT-----------SSCCSEE----EEEETTEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHcC-----------CccccCC----ceEEcCeEe
Confidence            3579999999999999999987           4445544    566666544

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.85  E-value=5.2e-06  Score=51.32  Aligned_cols=22  Identities=32%  Similarity=0.598  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +||+++|+|||||||+++.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999966

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=5.4e-06  Score=50.43  Aligned_cols=20  Identities=40%  Similarity=0.478  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++++|.+|||||||++.+..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999975

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.80  E-value=1.2e-05  Score=52.56  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        34 i~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            578999999999999999997

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.79  E-value=6.9e-06  Score=49.24  Aligned_cols=20  Identities=25%  Similarity=0.478  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      |++.|++||||||+++.+..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.3e-05  Score=52.00  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =-++++|++|||||||++.+..
T Consensus        27 ei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            3579999999999999999987

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.79  E-value=7.6e-06  Score=51.23  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=21.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+..-|+++|++||||||++++|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4556789999999999999999976

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=7.8e-06  Score=50.67  Aligned_cols=22  Identities=45%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++|+++|+|||||||+++.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999976

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.78  E-value=7.8e-06  Score=50.76  Aligned_cols=23  Identities=22%  Similarity=0.533  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++|+++|+|||||||+++.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999773

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.76  E-value=9.9e-06  Score=52.53  Aligned_cols=21  Identities=43%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        28 ~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999997

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=8.2e-06  Score=49.04  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|+++|++||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999977

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.74  E-value=8.9e-06  Score=49.39  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -|++.|++||||||+++.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3788999999999999999873

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=9.3e-06  Score=50.22  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +||+++|++||||||+++.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999966

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.74  E-value=8.3e-06  Score=53.73  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++-=+++++|++|||||||++.+..
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHh
Confidence            3445899999999999999998887

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=1.2e-05  Score=49.93  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+||+++|++||||||+++.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999976

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=2.3e-05  Score=51.08  Aligned_cols=21  Identities=33%  Similarity=0.427  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|+|||||++.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G   50 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIIST   50 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999997

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=6.6e-05  Score=49.89  Aligned_cols=63  Identities=24%  Similarity=0.257  Sum_probs=42.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC---CeEEEEEeCCCC
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQ   78 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~   78 (128)
                      .+..=|.++|+.++|||+|+|.+...... ..........|.|+........   +..+.++|+.|-
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~-f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKG-FSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL   95 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSC-SCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCC-CccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence            35556788899999999999999873221 1222334456788765444332   267999999984

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.72  E-value=1.9e-05  Score=51.93  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeE
Q 033075           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK   69 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   69 (128)
                      -++++|++|||||||++.+..           ...|+.|    .+.+++..
T Consensus        32 i~~liG~nGaGKSTLl~~i~G-----------l~~p~~G----~I~~~g~~   67 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITG-----------FLKADEG----RVYFENKD   67 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT-----------SSCCSEE----EEEETTEE
T ss_pred             EEEEECCCCCcHHHHHHHHHC-----------CCcCCCc----EEEECCEe
Confidence            368999999999999999997           4445544    56666644

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=1.9e-05  Score=52.73  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=.++++|++|||||||++.+..
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            334689999999999999999997

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.70  E-value=1.4e-05  Score=52.26  Aligned_cols=22  Identities=36%  Similarity=0.409  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =.++++|++|||||||++.+..
T Consensus        32 e~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHc
Confidence            3689999999999999999997

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.70  E-value=9.9e-06  Score=50.58  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .++|+++|++||||||+++.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999763

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.68  E-value=2.4e-05  Score=51.60  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=30.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEE
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF   72 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   72 (128)
                      =-++++|++|||||||++.+..           ...|+.|    .+.+++..+.-
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~G-----------l~~p~~G----~I~~~G~~i~~   68 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINF-----------LEKPSEG----AIIVNGQNINL   68 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT-----------SSCCSEE----EEEETTEECCE
T ss_pred             CEEEEECCCCCcHHHHHHHHHc-----------CccCCCC----CEEECCEEecc
Confidence            3579999999999999999987           3445544    66677766543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=2.5e-05  Score=53.17  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=23.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.++|++.|+||||||||++++..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHH
Confidence            4689999999999999999999965

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=1.5e-05  Score=50.16  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .=|+++|.|||||||++++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999976

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.64  E-value=4.3e-05  Score=53.09  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             HHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         6 ~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.+...+.++.+-++++||++|||||+++..+..
T Consensus        32 ~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          32 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence            3455566677888899999999999999977765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=1.3e-05  Score=48.96  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +|+++|.+||||||+.+.+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999976

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=4.2e-05  Score=48.31  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=28.1

Q ss_pred             HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus         7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+...+.++.+-+++++|++|+|||+++..+..+
T Consensus        33 ~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCeEEEecCCcccHHHHHHHHHH
Confidence            4455566677889999999999999999998873

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.57  E-value=2.1e-05  Score=47.97  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +|+++|.+||||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999966

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3e-05  Score=48.38  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..|+++|++||||||.++.+..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999976

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=2.5e-05  Score=48.73  Aligned_cols=21  Identities=43%  Similarity=0.586  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      |+|+|++|||||||++.+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999773

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=5.1e-05  Score=50.23  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=29.2

Q ss_pred             HHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus         6 ~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      ..+...+.++.+-++++||++|+|||++++.+..+.
T Consensus        28 ~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          28 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            345556667778899999999999999999988743

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.4e-05  Score=47.81  Aligned_cols=22  Identities=45%  Similarity=0.650  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .|++.|++|+|||||++.+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999999874

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.54  E-value=2.7e-05  Score=47.45  Aligned_cols=19  Identities=42%  Similarity=0.676  Sum_probs=17.5

Q ss_pred             EEEcCCCCCHHHHHHHHHh
Q 033075           21 LILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        21 ~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++|.+|||||||++++..
T Consensus         5 ~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           5 QVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHH
Confidence            5999999999999999976

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.7e-05  Score=47.29  Aligned_cols=23  Identities=13%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .=++++|++||||||+.+.+...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            33567899999999999999763

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.5e-05  Score=47.63  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=22.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+...-|+++|.+||||||+++.+..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34566789999999999999999875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=2.9e-05  Score=48.10  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      |+++|++|||||||++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999874

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.51  E-value=0.0002  Score=45.48  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++++|++||||||.+-.|..+
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            577999999999998888653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.50  E-value=3.1e-05  Score=47.43  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      |++.|++||||||+++.+...
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999998653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.50  E-value=2.9e-05  Score=49.80  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      |+++|+.|||||||+++++.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            68999999999999999985

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.50  E-value=5.8e-05  Score=48.30  Aligned_cols=32  Identities=34%  Similarity=0.338  Sum_probs=25.0

Q ss_pred             HHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +..++.+.+.-.+++.|++|+||||+++.+..
T Consensus        36 l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          36 LKHYVKTGSMPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            33444445555799999999999999999976

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.49  E-value=3e-05  Score=47.22  Aligned_cols=20  Identities=35%  Similarity=0.556  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      |++.|++||||||+.+.+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999976

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.49  E-value=4.4e-05  Score=46.43  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -+-|.++|.+||||||+.+.|..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35677999999999999998875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=4.5e-05  Score=47.67  Aligned_cols=26  Identities=35%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+.--|+++|++||||||+++.|...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34456888999999999999999873

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.46  E-value=3.9e-05  Score=46.62  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            455599999999999999873

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.46  E-value=0.00049  Score=43.64  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ..-++++|++||||||.+-++...
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345688999999999998887653

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.3e-05  Score=47.48  Aligned_cols=22  Identities=18%  Similarity=0.389  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhhc
Q 033075           20 VLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      |+++|++|+||+||++++....
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8899999999999999998643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=4.3e-05  Score=47.84  Aligned_cols=21  Identities=48%  Similarity=0.586  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      |+|+|++|||||||++.+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=7.7e-05  Score=47.57  Aligned_cols=33  Identities=27%  Similarity=0.253  Sum_probs=25.6

Q ss_pred             HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+..++.+...-.+++.|++|+||||+++.+..
T Consensus        26 ~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          26 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCeEEEECCCCCCchhhHHHHHH
Confidence            444455555556799999999999999998865

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.42  E-value=4.8e-05  Score=46.60  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .|+++|.+||||||+.+.+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999976

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.41  E-value=5.4e-05  Score=48.02  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.+.|++-|++||||||.++.|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999999977

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.38  E-value=6.4e-05  Score=46.47  Aligned_cols=26  Identities=35%  Similarity=0.473  Sum_probs=22.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ....+=|++.|++|||||||++.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34566688999999999999999975

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.38  E-value=6.9e-05  Score=50.83  Aligned_cols=26  Identities=35%  Similarity=0.452  Sum_probs=23.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..+.++|.+.|+||||||||+.++..
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            35788999999999999999999976

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.37  E-value=5.5e-05  Score=47.27  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -|+++|+|||||||+++++...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999773

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.36  E-value=5e-05  Score=49.42  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -|++.|+||+||||+++.+..
T Consensus        34 ~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999987

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.36  E-value=8e-05  Score=50.50  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..++++.|+.||||||+++.++.
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCCEEEEeeccccchHHHHHHhh
Confidence            45699999999999999999987

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=6.3e-05  Score=47.77  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++++||+|||||||++.++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            688999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=2.9e-05  Score=48.13  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-|.++|.+||||||+.+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4577889999999999999975

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=5.7e-05  Score=48.89  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -++++|++|||||||++.+..
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            578999999999999999886

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.25  E-value=9e-05  Score=45.47  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=18.3

Q ss_pred             EEE-EEcCCCCCHHHHHHHHHhh
Q 033075           19 HVL-ILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~-l~G~~~~GKTsl~~~l~~~   40 (128)
                      ||+ +.|.+||||||+++.+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            554 5699999999999999763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.22  E-value=0.0001  Score=47.34  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-.+++.|+||+||||+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999987

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00011  Score=47.19  Aligned_cols=23  Identities=43%  Similarity=0.424  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-.+++.|+||+||||+++.+..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            34689999999999999999987

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00019  Score=45.68  Aligned_cols=30  Identities=27%  Similarity=0.348  Sum_probs=23.6

Q ss_pred             hhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        10 ~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .++.+...-.+++.|++|+||||+++.+..
T Consensus        28 ~~i~~~~~~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          28 KFVDEGKLPHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             HHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHcCCCCeEEEECCCCCChhHHHHHHHH
Confidence            333444444689999999999999999976

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.0002  Score=45.66  Aligned_cols=29  Identities=24%  Similarity=0.281  Sum_probs=22.8

Q ss_pred             hhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        11 ~~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++.....-.+++.|++|+||||+++.+..
T Consensus        27 ~i~~~~~~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          27 TLKSANLPHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             HTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHcCCCCeEEEECCCCCChHHHHHHHHH
Confidence            33334444689999999999999999976

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.15  E-value=0.00028  Score=45.87  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +...|++.|++|+|||++++.+..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            455799999999999999999987

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.09  E-value=0.00016  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.-.++++||||+|||.|++.+..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            345789999999999999999987

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.08  E-value=0.00016  Score=44.95  Aligned_cols=26  Identities=38%  Similarity=0.480  Sum_probs=22.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..+.+-|++-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            45667899999999999999999986

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00022  Score=44.92  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+-|++.|++||||||+.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999998865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00022  Score=45.93  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -.+++.|++|+||||+++.+.+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999883

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.0004  Score=45.18  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-.+++.|++|+|||++++.+..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34699999999999999999987

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.98  E-value=0.00026  Score=45.64  Aligned_cols=24  Identities=33%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00024  Score=44.67  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      |++.|++||||+|+.+.+...
T Consensus         6 I~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566799999999999999774

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.94  E-value=0.0004  Score=44.00  Aligned_cols=28  Identities=21%  Similarity=0.450  Sum_probs=22.9

Q ss_pred             hhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           12 IFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..+++..=|.+.|.+|||||||.+.|..
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445666788999999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.91  E-value=0.0044  Score=37.45  Aligned_cols=26  Identities=31%  Similarity=0.241  Sum_probs=22.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ++..-|++-|+=|||||||++.+...
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhh
Confidence            45566888999999999999999984

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.90  E-value=0.00047  Score=44.40  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..--+++.|++|+|||||++.+..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            334578889999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.0006  Score=44.48  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-.+++.|++|+|||++++.+..
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHH
Confidence            345699999999999999999987

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.77  E-value=0.00051  Score=42.87  Aligned_cols=21  Identities=52%  Similarity=0.732  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -|++-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999998875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.0006  Score=42.11  Aligned_cols=23  Identities=30%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+-|++.|.+||||||+++.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46688999999999999998865

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00054  Score=44.79  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-.+++.|++|+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34589999999999999999987

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.0004  Score=44.59  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+++.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999877

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.71  E-value=0.0007  Score=43.12  Aligned_cols=27  Identities=30%  Similarity=0.581  Sum_probs=21.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ..+..-|+++|++||||||.+-++..+
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345667899999999999998777653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.00047  Score=48.56  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-+|+++||+|+|||-|++++..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            44899999999999999999976

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.66  E-value=0.00032  Score=45.46  Aligned_cols=20  Identities=30%  Similarity=0.112  Sum_probs=17.2

Q ss_pred             EEEcCCCCCHHHHHHHHHhh
Q 033075           21 LILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        21 ~l~G~~~~GKTsl~~~l~~~   40 (128)
                      .+.|++|+|||++++.+...
T Consensus        50 ~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHH
Confidence            44599999999999999873

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00074  Score=42.38  Aligned_cols=20  Identities=35%  Similarity=0.508  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      |++-|..||||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77789999999999999876

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.0011  Score=43.32  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-.+++.|++|+|||++++.+..
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHH
Confidence            345699999999999999999987

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0006  Score=43.37  Aligned_cols=23  Identities=35%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -.|++-|+.||||||+++.|...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46888899999999999998863

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0013  Score=44.09  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +..+=|++.|++||||||+.+.+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4568899999999999999998865

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0018  Score=40.73  Aligned_cols=29  Identities=17%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             hhhcccee-EEEEEcCCCCCHHHHHHHHHh
Q 033075           11 YIFTKTEF-HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        11 ~~~~~~~~-ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.+.+.- -+++.|++|+||||+++.+..
T Consensus        17 ~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          17 SYQAGRGHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             HHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence            33344433 489999999999999998876

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.40  E-value=0.00084  Score=42.66  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=15.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      ...-++++|++||||||.+-++..+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3445778999999999998877653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0014  Score=41.67  Aligned_cols=26  Identities=35%  Similarity=0.681  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      +..=|+++|++||||||.+-++..+.
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34557889999999999998887643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.002  Score=42.71  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=20.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHH
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLK   38 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~   38 (128)
                      +++.+=|++-|.+|||||||...+.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            4556788899999999999988764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0012  Score=41.72  Aligned_cols=20  Identities=40%  Similarity=0.677  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      |++-|..||||||+++.+..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998888765

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.00016  Score=44.48  Aligned_cols=19  Identities=26%  Similarity=0.382  Sum_probs=17.2

Q ss_pred             EEEcCCCCCHHHHHHHHHh
Q 033075           21 LILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        21 ~l~G~~~~GKTsl~~~l~~   39 (128)
                      +|+|+.|||||||+.++..
T Consensus        28 vi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            5789999999999999965

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.30  E-value=0.0013  Score=45.03  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=22.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+.-.++++||+|||||-|++++..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            3566799999999999999999976

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.29  E-value=0.00083  Score=44.30  Aligned_cols=20  Identities=25%  Similarity=0.554  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+++|+.|||||+++.++..
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            37999999999999998854

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0014  Score=40.40  Aligned_cols=21  Identities=24%  Similarity=0.301  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =+.+.|++|+|||+|+..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467889999999999998876

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0024  Score=40.91  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++.|++|+|||++++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78889999999999998866

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0016  Score=41.49  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -|++-|..||||||+++.+...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4778899999999999999873

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0021  Score=43.12  Aligned_cols=25  Identities=24%  Similarity=0.219  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +.-.++++|++|+|||.|++.+...
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHhh
Confidence            3446889999999999999999773

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.14  E-value=0.0017  Score=40.70  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +=|++.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999998854

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0023  Score=40.13  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +=|++.|..||||||+++.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4578999999999999998865

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.12  E-value=0.00085  Score=45.14  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.+++.|++|+|||+|++++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4799999999999999999975

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.04  E-value=0.0045  Score=40.56  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ...-|++.|.+|+|||||+..+.+
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            344678999999999999999876

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0019  Score=40.81  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      --+.+.|++|+|||+|+..+..
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            3567889999999999998875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.00  E-value=0.0019  Score=43.69  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.++|.+-|+-||||||+++.+..
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            568899999999999999999987

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.98  E-value=0.0028  Score=43.33  Aligned_cols=25  Identities=32%  Similarity=0.224  Sum_probs=21.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++.--+++.||||+|||++++.+..
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHH
Confidence            3455788999999999999999977

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.98  E-value=0.0021  Score=40.85  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=+++.|++|+|||+|+-.++.
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3467889999999999988875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0019  Score=41.18  Aligned_cols=20  Identities=45%  Similarity=0.597  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++.|--|||||||+++++.
T Consensus         6 ~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHH
T ss_pred             EEEeeCCCCCHHHHHHHHHh
Confidence            57789999999999999987

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.0025  Score=40.20  Aligned_cols=21  Identities=43%  Similarity=0.580  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      |++-|..||||||+++.+...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            788899999999999988763

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.90  E-value=0.0038  Score=43.16  Aligned_cols=96  Identities=14%  Similarity=0.091  Sum_probs=50.2

Q ss_pred             HHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCccchhhHH
Q 033075            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWE   86 (128)
Q Consensus         8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~   86 (128)
                      .+..+...+.=-|++.|+.||||||.+..++......     ....-|+...+ ...+.+ .++.+ +-.....|.....
T Consensus       149 ~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~-----~~~i~tiEdPi-E~~~~~~~q~~v-~~~~~~~~~~~l~  221 (401)
T d1p9ra_         149 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS-----ERNILTVEDPI-EFDIDGIGQTQV-NPRVDMTFARGLR  221 (401)
T ss_dssp             HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT-----TSCEEEEESSC-CSCCSSSEEEEC-BGGGTBCHHHHHH
T ss_pred             HHHHHHhhhhceEEEEcCCCCCccHHHHHHhhhhcCC-----CceEEEeccCc-ccccCCCCeeee-cCCcCCCHHHHHH
Confidence            3444555677789999999999999999998832211     01111111111 111222 33443 2222335666666


Q ss_pred             HhhhccCEEEEEEECCCcccHHHH
Q 033075           87 KYYEEAHAVVFVIDAACPSRFEDS  110 (128)
Q Consensus        87 ~~~~~~~~~v~v~d~~~~~s~~~~  110 (128)
                      ..++.---++++=.+.|.++...+
T Consensus       222 ~~lR~dPDvi~igEiRd~~ta~~a  245 (401)
T d1p9ra_         222 AILRQDPDVVMVGEIRDLETAQIA  245 (401)
T ss_dssp             HHGGGCCSEEEESCCCSHHHHHHH
T ss_pred             HHHhhcCCEEEecCcCChHHHHHH
Confidence            666543333444455565554443

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.89  E-value=0.003  Score=38.87  Aligned_cols=22  Identities=32%  Similarity=0.344  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-+++.|++|+||||++-.+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4578999999999999988876

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.88  E-value=0.0015  Score=43.32  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=16.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..=|++.|.+||||||+.+.|..
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            33489999999999999998865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0023  Score=43.71  Aligned_cols=20  Identities=20%  Similarity=0.513  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      .+++|+.|+|||+++.++..
T Consensus        28 ~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999854

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.78  E-value=0.0035  Score=42.41  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=22.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +.++|.+-|+-|+||||+++.+...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4679999999999999999999873

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.77  E-value=0.0031  Score=40.02  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.--+++.|++|+|||+|+.++..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            344578889999999999999877

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.77  E-value=0.0028  Score=42.81  Aligned_cols=24  Identities=38%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..++|.|-|+-|+||||+++.+..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.67  E-value=0.0037  Score=38.53  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-+++.|++|+||||++-.+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4578999999999999988876

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.61  E-value=0.0037  Score=39.32  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =+++.|++|+|||+|+..+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467889999999999999976

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0046  Score=39.16  Aligned_cols=22  Identities=27%  Similarity=0.176  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=+++.|++|+|||+|+..++.
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3567889999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.46  E-value=0.0051  Score=37.57  Aligned_cols=23  Identities=30%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..-+++.|++|+||||+.-.+..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            34689999999999999988776

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.45  E-value=0.0051  Score=41.39  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhh
Q 033075           20 VLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +++.|+||+|||.|++.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999999873

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.14  E-value=0.0066  Score=37.88  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=18.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +---+++.|++|+|||+|+..++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            344567889999999999877643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.12  E-value=0.0077  Score=38.19  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -|++.|..||||||.++.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999965

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.98  E-value=0.0086  Score=37.71  Aligned_cols=20  Identities=35%  Similarity=0.507  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.+.|++|+|||-|++.+.+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999987

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.011  Score=38.47  Aligned_cols=21  Identities=38%  Similarity=0.434  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =+.+.|++++|||+|+-.+..
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            457889999999999888765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.81  E-value=0.0096  Score=38.50  Aligned_cols=20  Identities=15%  Similarity=0.297  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++.|.+|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999888764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.80  E-value=0.011  Score=39.46  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Q 033075           19 HVLILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~~   40 (128)
                      -++++|++|+|||.+++.+...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5778899999999999999873

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0083  Score=41.25  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      .-+++++|.+|+|||++++.++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            44699999999999999987775

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.65  E-value=0.0068  Score=39.52  Aligned_cols=21  Identities=29%  Similarity=0.313  Sum_probs=15.9

Q ss_pred             eEEEEEcCCCCCHHHH-HHHHH
Q 033075           18 FHVLILGIDKAGKTTL-LEKLK   38 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl-~~~l~   38 (128)
                      -.++|+|.+|+||||. +.++.
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~   36 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIA   36 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHH
Confidence            3478999999999975 55543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.013  Score=38.74  Aligned_cols=24  Identities=38%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        16 ~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +-=|++++|++|+|||+|+..+..
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHH
Confidence            334899999999999999988876

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.49  E-value=0.0089  Score=39.33  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=16.1

Q ss_pred             eeEEEEEcCCCCCHHHH-HHHH
Q 033075           17 EFHVLILGIDKAGKTTL-LEKL   37 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl-~~~l   37 (128)
                      .-.++|.|.+|+||||. ++++
T Consensus        24 ~g~~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHH
Confidence            34588999999999975 4544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.013  Score=37.76  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -.++.|++|+|||+|+-.+..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            356899999999999988765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.40  E-value=0.013  Score=36.79  Aligned_cols=25  Identities=12%  Similarity=0.126  Sum_probs=21.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++--+++.|+++.|||.++..+..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4566778889999999999998876

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.36  E-value=0.051  Score=35.36  Aligned_cols=21  Identities=33%  Similarity=0.365  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =+.+.|++++|||+|+..+..
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            456789999999999988866

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.13  E-value=0.08  Score=34.43  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =+.+.|++++|||+|+-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            456889999999999877655

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.021  Score=36.44  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++.|++.+|||++++.+..
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            67889999999999999854

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.61  E-value=0.023  Score=36.03  Aligned_cols=20  Identities=45%  Similarity=0.587  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      +++.|++.+|||++++++..
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999998854

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.61  E-value=0.031  Score=36.36  Aligned_cols=27  Identities=19%  Similarity=0.326  Sum_probs=22.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKSVY   41 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~   41 (128)
                      +++--+.+.|+++.|||+|++.+....
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456677888999999999999998743

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.48  E-value=0.036  Score=31.79  Aligned_cols=25  Identities=20%  Similarity=0.178  Sum_probs=22.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.-+-|.+.|.+++||++|.+.+..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4567899999999999999999965

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.81  E-value=0.056  Score=34.58  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=25.5

Q ss_pred             hHHHHhhhhc--cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            5 FYGLWKYIFT--KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         5 ~~~~~~~~~~--~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++.+.....+  .....|++.|++|+||+.+++.+..
T Consensus         9 ~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           9 MKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            3444444332  3566789999999999999999865

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.64  E-value=0.047  Score=35.75  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      |++++|.+++|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            799999999999999888875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.042  Score=37.23  Aligned_cols=19  Identities=42%  Similarity=0.420  Sum_probs=15.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 033075           19 HVLILGIDKAGKTTLLEKL   37 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l   37 (128)
                      -.++.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4678899999999987554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.092  Score=33.73  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=17.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +..-=+++.|-.|+||||+.-.+..
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~   30 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAI   30 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHH
Confidence            3333456789999999997666644

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.69  E-value=0.067  Score=34.19  Aligned_cols=21  Identities=38%  Similarity=0.479  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +|++.|-.|+||||+.-.+..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            678899999999999876644

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=90.56  E-value=0.099  Score=30.49  Aligned_cols=18  Identities=44%  Similarity=0.597  Sum_probs=14.0

Q ss_pred             EEEcCCCCCHHH-HHHHHH
Q 033075           21 LILGIDKAGKTT-LLEKLK   38 (128)
Q Consensus        21 ~l~G~~~~GKTs-l~~~l~   38 (128)
                      +++|+-.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            568999999999 555543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=0.065  Score=35.63  Aligned_cols=14  Identities=43%  Similarity=0.736  Sum_probs=12.5

Q ss_pred             EEEcCCCCCHHHHH
Q 033075           21 LILGIDKAGKTTLL   34 (128)
Q Consensus        21 ~l~G~~~~GKTsl~   34 (128)
                      +++|.+|.|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999964

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.89  E-value=0.14  Score=31.51  Aligned_cols=26  Identities=19%  Similarity=0.164  Sum_probs=22.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        14 ~~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.....+++-|++|+|||+++..+..
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHH
Confidence            45677899999999999999998876

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.14  Score=31.19  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=17.5

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHHh
Q 033075           18 FHVLILGID-KAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~-~~GKTsl~~~l~~   39 (128)
                      -|+.+.|-. ||||||+.--|..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            367889985 9999999766644

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.55  E-value=0.097  Score=29.80  Aligned_cols=21  Identities=14%  Similarity=0.088  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 033075           19 HVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ..++.++.|+|||.++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            446789999999998766544

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.55  E-value=0.13  Score=32.89  Aligned_cols=25  Identities=28%  Similarity=0.499  Sum_probs=17.3

Q ss_pred             cceeEEEEE-cCCCCCHHHHHHHHHh
Q 033075           15 KTEFHVLIL-GIDKAGKTTLLEKLKS   39 (128)
Q Consensus        15 ~~~~ki~l~-G~~~~GKTsl~~~l~~   39 (128)
                      +...+|+++ |-.|+||||+.-.+..
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344555555 9999999998655543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.47  E-value=0.076  Score=35.39  Aligned_cols=15  Identities=40%  Similarity=0.689  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 033075           20 VLILGIDKAGKTTLL   34 (128)
Q Consensus        20 i~l~G~~~~GKTsl~   34 (128)
                      .++.|.+|.|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            478899999999963

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.26  E-value=0.087  Score=35.18  Aligned_cols=15  Identities=40%  Similarity=0.687  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 033075           20 VLILGIDKAGKTTLL   34 (128)
Q Consensus        20 i~l~G~~~~GKTsl~   34 (128)
                      .+++|.+|.|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            468999999999975

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.26  E-value=0.099  Score=34.29  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 033075           17 EFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      -=|++++|.+++|||+|+..+..
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHHH
Confidence            34789999999999999877664

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.24  E-value=0.15  Score=32.93  Aligned_cols=19  Identities=32%  Similarity=0.429  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 033075           19 HVLILGIDKAGKTTLLEKL   37 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~~~l   37 (128)
                      +|++-|-.|+||||+.--+
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5778899999999976555

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.67  E-value=0.15  Score=31.04  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 033075           20 VLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        20 i~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++++|...||||.++..+..
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            58999999999999999865

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.15  E-value=0.33  Score=35.66  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=24.9

Q ss_pred             hhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            4 LFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         4 ~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      +.+..+..+.. ++.=-|++.|.+|||||.-.+.++.
T Consensus        77 vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~  113 (710)
T d1br2a2          77 IADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQ  113 (710)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            33445544433 3344588889999999999888866

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.74  E-value=0.13  Score=33.51  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 033075           18 FHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus        18 ~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      =|+.++|.+|+|||+|+..+..
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHH
T ss_pred             ceEeeccCCCCChHHHHHHHHh
Confidence            3688999999999999877655

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.68  E-value=0.26  Score=31.86  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=24.1

Q ss_pred             HHHHhhhhccceeEEEEEcCCCCCHHHHHHHH
Q 033075            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKL   37 (128)
Q Consensus         6 ~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l   37 (128)
                      ..+...+.+......++-|+.|||||-..-..
T Consensus        93 ~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a  124 (264)
T d1gm5a3          93 QEIRNDMISEKPMNRLLQGDVGSGKTVVAQLA  124 (264)
T ss_dssp             HHHHHHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred             HHHHHHhhccCcceeeeeccccccccHHHHHH
Confidence            34555566677788899999999999875444

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=86.42  E-value=0.48  Score=34.66  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             hhhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            3 SLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         3 ~~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++....+..+.. ++.=-|++.|.+|||||.-.+.++.
T Consensus        71 ~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          71 ALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            344455554432 3344688899999999999887755

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.97  E-value=0.14  Score=28.76  Aligned_cols=18  Identities=22%  Similarity=0.117  Sum_probs=13.9

Q ss_pred             eeEEEEEcCCCCCHHHHH
Q 033075           17 EFHVLILGIDKAGKTTLL   34 (128)
Q Consensus        17 ~~ki~l~G~~~~GKTsl~   34 (128)
                      .-.+++.+++|+|||..+
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            456788899999999443

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=85.72  E-value=0.65  Score=29.28  Aligned_cols=32  Identities=16%  Similarity=0.134  Sum_probs=24.1

Q ss_pred             HHHhhhhccceeEEEEEcCCCCCHHHHHHHHH
Q 033075            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK   38 (128)
Q Consensus         7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~   38 (128)
                      .+...+........++.|+.|+|||-+.-...
T Consensus        66 ~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          66 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             HHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             HHHHHHhccCccCeEEEcCCCCCcHHHHHHHH
Confidence            34455666677888999999999999855543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.72  E-value=0.35  Score=29.08  Aligned_cols=16  Identities=31%  Similarity=0.299  Sum_probs=13.4

Q ss_pred             EEEEEcCCCCCHHHHH
Q 033075           19 HVLILGIDKAGKTTLL   34 (128)
Q Consensus        19 ki~l~G~~~~GKTsl~   34 (128)
                      ++++.++.|+|||.+.
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5789999999999743

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.64  E-value=0.65  Score=34.13  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=26.0

Q ss_pred             hhhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            3 SLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         3 ~~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++....|..+.. ++.=-|++.|.+|||||.-.+.++.
T Consensus       110 aiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~  147 (712)
T d1d0xa2         110 AISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQ  147 (712)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHH
Confidence            344455544433 4455788889999999999888866

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=83.19  E-value=0.83  Score=33.94  Aligned_cols=37  Identities=27%  Similarity=0.282  Sum_probs=25.5

Q ss_pred             hhhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            3 SLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         3 ~~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++....+..+.. ++.=-|++.|.+|||||.-.+.++.
T Consensus       106 avA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~  143 (789)
T d1kk8a2         106 SVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIM  143 (789)
T ss_dssp             HHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            344455554443 4556788889999999988777765

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.89  E-value=0.8  Score=34.06  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=24.8

Q ss_pred             hhhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            3 SLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         3 ~~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++....+..+.. ++.=-|++.|.+|||||.-.+.++.
T Consensus       108 aiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~  145 (794)
T d2mysa2         108 SISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQ  145 (794)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            333444544332 3444688889999999988887765

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=82.77  E-value=0.86  Score=33.51  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=25.3

Q ss_pred             hhhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075            3 SLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKS   39 (128)
Q Consensus         3 ~~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~   39 (128)
                      ++....+..+.. .+.=-|++.|.+|||||.-.+.++.
T Consensus        79 ~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~  116 (730)
T d1w7ja2          79 AVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR  116 (730)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            334444544332 3445688899999999998888765

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.85  E-value=0.67  Score=26.48  Aligned_cols=20  Identities=35%  Similarity=0.305  Sum_probs=15.8

Q ss_pred             EEEcCCCCCHHHHHHHHHhh
Q 033075           21 LILGIDKAGKTTLLEKLKSV   40 (128)
Q Consensus        21 ~l~G~~~~GKTsl~~~l~~~   40 (128)
                      +++|+-.|||||-+-+...+
T Consensus         6 li~GpMfsGKTt~Li~~~~~   25 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRVRR   25 (133)
T ss_dssp             EEECCTTSCHHHHHHHHHHH
T ss_pred             EEEecccCHHHHHHHHHHHH
Confidence            56899999999986666553