Citrus Sinensis ID: 033090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MEAAEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLDH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEccccEEEEEEccEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MEAAEELERRSKFLNSLIQKKKAKEQQEQNDQLNVrvrasdmplplqnKAFKCARdqldsmpgkldSKRLALALKKEfdssygpawhcivgtsfgsyvthSLGGFLYFSIDKVYILLFKTAVEPLDH
Flexible Loop (DISEMBL)
meaaeelerrsKFLNSLIQKKKakeqqeqndqlnVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLDH
Low Complexity Region (SEG)
MEAAEELERRSKFLNSLIqkkkakeqqeqNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLDH
Disordered region (IsUnstruct)
*********************************************************************LALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV*****
Disordered Region (DISOPRED)
***********************************RVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV*****
Disordered Region (DISEMBL)
*********RSKFLNSLIQ************QLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLDH
Disordered Region (DISPRO)
*****ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAxxxxxxxxxxxxxxxxxxxxxEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLDH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q86A88	91	Dynein light chain, cytop	yes	no	0.661	0.923	0.436	2e-16
O02414	89	Dynein light chain LC6, f	N/A	no	0.645	0.921	0.447	4e-16
Q24117	89	Dynein light chain 1, cyt	yes	no	0.645	0.921	0.447	3e-15
P63170	89	Dynein light chain 1, cyt	yes	no	0.645	0.921	0.435	3e-15
P63169	89	Dynein light chain 1, cyt	yes	no	0.645	0.921	0.435	3e-15
P63168	89	Dynein light chain 1, cyt	yes	no	0.645	0.921	0.435	3e-15
P61273	89	Dynein light chain 1, cyt	N/A	no	0.645	0.921	0.435	3e-15
P63167	89	Dynein light chain 1, cyt	yes	no	0.645	0.921	0.435	3e-15
P61285	89	Dynein light chain 1, cyt	yes	no	0.645	0.921	0.435	3e-15
O96860	89	Dynein light chain 2, cyt	yes	no	0.645	0.921	0.447	3e-15

>sp|Q86A88|DYL_DICDI Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 35  VRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSF 94
           + V+ +DMP  +Q  A +C     +    + D   +A+ +KKEFD  Y P WHCIVG SF
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFEETNIERD---IAMIIKKEFDKKYSPTWHCIVGKSF 64

Query: 95  GSYVTHSLGGFLYFSIDKVYILLFKTA 121
           GS+VTH    F+YF+I+K  +LLFK  
Sbjct: 65  GSFVTHETKNFIYFNINKHSVLLFKAG 91

Acts as a non-catalytic accessory component of a dynein complex.
Dictyostelium discoideum (taxid: 44689)

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DMP  +Q  A  CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQALEKFNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V +LLFK+ 
Sbjct: 65  YVTHETKHFIYFYLGQVAVLLFKSG 89

Anthocidaris crassispina (taxid: 7629)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  + +CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  + +CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  + +CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Mus musculus (taxid: 10090)

>sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  + +CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Macaca fascicularis (taxid: 9541)

>sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  + +CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Homo sapiens (taxid: 9606)

>sp|P61285|DYL1_BOVIN Dynein light chain 1, cytoplasmic OS=Bos taurus GN=DYNLL1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  + +CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Bos taurus (taxid: 9913)

>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAFIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
449464808	134	PREDICTED: dynein light chain 1, cytopla	0.984	0.932	0.888	2e-58
225424335	127	PREDICTED: dynein light chain, cytoplasm	0.960	0.960	0.888	9e-58
297737651	125	unnamed protein product [Vitis vinifera]	0.960	0.976	0.888	1e-57
224111466	128	predicted protein [Populus trichocarpa]	0.992	0.984	0.842	2e-57
351722903	133	uncharacterized protein LOC100305536 [Gl	1.0	0.954	0.840	2e-56
224099533	128	predicted protein [Populus trichocarpa]	0.992	0.984	0.826	2e-56
356513084	133	PREDICTED: dynein light chain LC6, flage	1.0	0.954	0.848	3e-56
255633756	133	unknown [Glycine max]	1.0	0.954	0.840	8e-56
15220678	129	dynein light chain type 1-like protein [	1.0	0.984	0.796	8e-54
297845392	129	dynein light chain type 1 family protein	1.0	0.984	0.781	2e-53

>gi|449464808|ref|XP_004150121.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus] gi|449517979|ref|XP_004166021.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/126 (88%), Positives = 116/126 (92%), Gaps = 1/126 (0%)

Query: 1   MEAAE-ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLD 59
           M+ AE ELERRSKFLN LI KKKA EQQEQ D+LNVRVRASDM  PLQN+AF CAR+ LD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 60  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 119
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 120 TAVEPL 125
           TAVEPL
Sbjct: 121 TAVEPL 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424335|ref|XP_002284827.1| PREDICTED: dynein light chain, cytoplasmic-like [Vitis vinifera]

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 111/125 (88%), Positives = 116/125 (92%), Gaps = 3/125 (2%)

Query: 3   AAEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMP 62
           A EELERRSKFL+SLIQKKKA    EQ+D LNVRVRASDMPL LQ++AFKCARD LD+MP
Sbjct: 6   AEEELERRSKFLSSLIQKKKA---TEQHDHLNVRVRASDMPLALQSRAFKCARDNLDAMP 62

Query: 63  GKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 122
           GKLDSKRLALALKKEFDS YGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV
Sbjct: 63  GKLDSKRLALALKKEFDSLYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 122

Query: 123 EPLDH 127
           EPLDH
Sbjct: 123 EPLDH 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737651|emb|CBI26852.3| unnamed protein product [Vitis vinifera]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/125 (88%), Positives = 116/125 (92%), Gaps = 3/125 (2%)

Query: 3   AAEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMP 62
           A EELERRSKFL+SLIQKKKA    EQ+D LNVRVRASDMPL LQ++AFKCARD LD+MP
Sbjct: 4   AEEELERRSKFLSSLIQKKKA---TEQHDHLNVRVRASDMPLALQSRAFKCARDNLDAMP 60

Query: 63  GKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 122
           GKLDSKRLALALKKEFDS YGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV
Sbjct: 61  GKLDSKRLALALKKEFDSLYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 120

Query: 123 EPLDH 127
           EPLDH
Sbjct: 121 EPLDH 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111466|ref|XP_002315865.1| predicted protein [Populus trichocarpa] gi|222864905|gb|EEF02036.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/127 (84%), Positives = 121/127 (95%), Gaps = 1/127 (0%)

Query: 1   MEAAE-ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLD 59
           M+ AE ELERRSKFL+SLI+KKKAKE QEQ+ +LNVRVRA+DMP+ LQ++AF+CARDQLD
Sbjct: 1   MDGAELELERRSKFLSSLIEKKKAKEHQEQHSKLNVRVRAADMPVLLQDRAFRCARDQLD 60

Query: 60  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 119
           SMPGKLDSKRLALALKKEFD++YGPAWHCIVGTSFGSYVTHS GGFLYFSIDKVYILLF+
Sbjct: 61  SMPGKLDSKRLALALKKEFDAAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFR 120

Query: 120 TAVEPLD 126
           TAVEPL+
Sbjct: 121 TAVEPLN 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722903|ref|NP_001236748.1| uncharacterized protein LOC100305536 [Glycine max] gi|255625837|gb|ACU13263.1| unknown [Glycine max]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/132 (84%), Positives = 117/132 (88%), Gaps = 5/132 (3%)

Query: 1   MEAA-EELERRSKFLNSLIQKKKAKEQQEQNDQL---NVRVRASDMPLPLQNKAFKCARD 56
           ME A EELERRSKFL SLIQKKK  EQQEQ+D L   NVRVRA DMPLPLQN+AF+CARD
Sbjct: 1   MEGAQEELERRSKFLKSLIQKKKTIEQQEQHDHLQHNNVRVRACDMPLPLQNRAFRCARD 60

Query: 57  QLDSMPGK-LDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYI 115
            LDSMP K LDSKRLAL LKKEFD+SYGPAWHCIVGTSFGSYVTHS GGF+YFSIDKVY+
Sbjct: 61  LLDSMPSKKLDSKRLALTLKKEFDTSYGPAWHCIVGTSFGSYVTHSFGGFVYFSIDKVYV 120

Query: 116 LLFKTAVEPLDH 127
           LLFKTAVEPLDH
Sbjct: 121 LLFKTAVEPLDH 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099533|ref|XP_002311521.1| predicted protein [Populus trichocarpa] gi|222851341|gb|EEE88888.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/127 (82%), Positives = 119/127 (93%), Gaps = 1/127 (0%)

Query: 1   MEAAE-ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLD 59
           ME AE ELERRSKFL+ LI+K+KAKE QEQ  +L+VRVRA+DMP+ LQ++AF+CARDQLD
Sbjct: 1   MEGAELELERRSKFLSGLIEKRKAKEHQEQPSKLSVRVRAADMPIVLQDRAFRCARDQLD 60

Query: 60  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 119
           SMPGKLDSKRLALALKKEFD++YGPAWHCIVGTSFGSYVTHS GGFLYFSIDKVYILLF+
Sbjct: 61  SMPGKLDSKRLALALKKEFDAAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFR 120

Query: 120 TAVEPLD 126
           TAVEPL+
Sbjct: 121 TAVEPLE 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513084|ref|XP_003525244.1| PREDICTED: dynein light chain LC6, flagellar outer arm-like [Glycine max]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/132 (84%), Positives = 118/132 (89%), Gaps = 5/132 (3%)

Query: 1   MEAAEE-LERRSKFLNSLIQKKKAKEQQEQNDQL---NVRVRASDMPLPLQNKAFKCARD 56
           ME AEE LERRSKFL SLIQKKK  EQQEQ+D L   NVRVRA DMPLPLQ++AF+CARD
Sbjct: 1   MEGAEEELERRSKFLKSLIQKKKTIEQQEQHDHLQHNNVRVRACDMPLPLQSRAFRCARD 60

Query: 57  QLDSMP-GKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYI 115
            LDSMP  KLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGF+YFSIDKVY+
Sbjct: 61  LLDSMPPKKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFVYFSIDKVYV 120

Query: 116 LLFKTAVEPLDH 127
           LLFKTAVEPLDH
Sbjct: 121 LLFKTAVEPLDH 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633756|gb|ACU17238.1| unknown [Glycine max]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/132 (84%), Positives = 118/132 (89%), Gaps = 5/132 (3%)

Query: 1   MEAAEE-LERRSKFLNSLIQKKKAKEQQEQNDQL---NVRVRASDMPLPLQNKAFKCARD 56
           ME AEE LERRSKFL SLIQKKK  EQQEQ+D L   NVRVRA DMPLPLQ++AF+CARD
Sbjct: 1   MEGAEEELERRSKFLKSLIQKKKTIEQQEQHDHLQHNNVRVRACDMPLPLQSRAFRCARD 60

Query: 57  QLDSMP-GKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYI 115
            LDSMP  KLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGF+YFSIDKVY+
Sbjct: 61  LLDSMPPKKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFVYFSIDKVYV 120

Query: 116 LLFKTAVEPLDH 127
           LLFKTAVEPL+H
Sbjct: 121 LLFKTAVEPLNH 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220678|ref|NP_173736.1| dynein light chain type 1-like protein [Arabidopsis thaliana] gi|9295690|gb|AAF86996.1|AC005292_5 F26F24.7 [Arabidopsis thaliana] gi|17380802|gb|AAL36088.1| putative dynein light subunit lc6, flagellar outer arm [Arabidopsis thaliana] gi|20465367|gb|AAM20087.1| putative dynein light subunit lc6, flagellar outer arm [Arabidopsis thaliana] gi|332192237|gb|AEE30358.1| dynein light chain type 1-like protein [Arabidopsis thaliana]

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 102/128 (79%), Positives = 113/128 (88%), Gaps = 1/128 (0%)

Query: 1   MEAAE-ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLD 59
           ME  E ELERRSKFLNSLIQKKKAKEQQ+Q D+ NVRVRASDMPLP QN+AF  +R+ L+
Sbjct: 1   MEGVELELERRSKFLNSLIQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILN 60

Query: 60  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 119
           + PGK D+KRLA ALKK+FDS+YGPAWHCIVGTSFGSYVTHS GGFLYF IDKVY+LLFK
Sbjct: 61  ATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFK 120

Query: 120 TAVEPLDH 127
           TAVEPLD 
Sbjct: 121 TAVEPLDQ 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845392|ref|XP_002890577.1| dynein light chain type 1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297336419|gb|EFH66836.1| dynein light chain type 1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/128 (78%), Positives = 113/128 (88%), Gaps = 1/128 (0%)

Query: 1   MEAAE-ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLD 59
           ME  E ELERRSKFLNSLIQKKKAKEQQ+Q D+ NVRVRASDMPL  QN+AF  +R+ L+
Sbjct: 1   MEGVELELERRSKFLNSLIQKKKAKEQQDQKDEFNVRVRASDMPLVQQNRAFSLSREILN 60

Query: 60  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 119
           + PGK D+KRLAL LKK+FDS+YGPAWHCIVGTSFGSYVTHS+GGF+YF IDKVY+LLFK
Sbjct: 61  ATPGKADNKRLALTLKKDFDSAYGPAWHCIVGTSFGSYVTHSIGGFIYFQIDKVYVLLFK 120

Query: 120 TAVEPLDH 127
           TAVEPLD 
Sbjct: 121 TAVEPLDQ 128

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2028045	129	AT1G23220 "AT1G23220" [Arabido	0.992	0.976	0.724	1.9e-44
TAIR|locus:2147725	209	AT5G20110 "AT5G20110" [Arabido	0.732	0.444	0.627	8.2e-28
UNIPROTKB|Q4W5W8	313	vfPIP "Dynein light chain" [Vi	0.685	0.277	0.674	4e-26
DICTYBASE|DDB_G0274815	91	dlcB "cytoplasmic dynein light	0.645	0.901	0.447	1.6e-15
TAIR|locus:2093457	93	AT3G16120 "AT3G16120" [Arabido	0.669	0.913	0.441	1.6e-15
UNIPROTKB|Q5F412	89	DYNLL1 "Uncharacterized protei	0.637	0.910	0.452	2.6e-15
ZFIN|ZDB-GENE-040426-1961	89	dynll1 "dynein, light chain, L	0.637	0.910	0.452	2.6e-15
FB|FBgn0026141	89	Cdlc2 "Cytoplasmic dynein ligh	0.637	0.910	0.452	4.2e-15
FB|FBgn0011760	89	ctp "cut up" [Drosophila melan	0.637	0.910	0.452	4.2e-15
WB|WBGene00001005	89	dlc-1 [Caenorhabditis elegans	0.637	0.910	0.452	4.2e-15

TAIR|locus:2028045 AT1G23220 "AT1G23220" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 92/127 (72%), Positives = 102/127 (80%)

Query:     1 MEAAE-ELERRSKFLNSLIXXXXXXXXXXXNDQLNVRVRASDMPLPLQNKAFKCARDQLD 59
             ME  E ELERRSKFLNSLI            D+ NVRVRASDMPLP QN+AF  +R+ L+
Sbjct:     1 MEGVELELERRSKFLNSLIQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILN 60

Query:    60 SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 119
             + PGK D+KRLA ALKK+FDS+YGPAWHCIVGTSFGSYVTHS GGFLYF IDKVY+LLFK
Sbjct:    61 ATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFK 120

Query:   120 TAVEPLD 126
             TAVEPLD
Sbjct:   121 TAVEPLD 127

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

TAIR|locus:2147725 AT5G20110 "AT5G20110" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 59/94 (62%), Positives = 72/94 (76%)

Query:    31 DQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIV 90
             + L VR+ A+DMP  +Q  AF+CAR  LDS+  K  SK +A  LKKEFD  YGPAWHCIV
Sbjct:   113 EMLTVRILAADMPGFMQAHAFRCARMTLDSLE-KFSSKHMAFNLKKEFDKGYGPAWHCIV 171

Query:    91 GTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEP 124
             G+SFGS+VTHS G F+YFS+DK+Y+LLFKT V P
Sbjct:   172 GSSFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRP 205

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

UNIPROTKB|Q4W5W8 vfPIP "Dynein light chain" [Vicia faba (taxid:3906)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 60/89 (67%), Positives = 69/89 (77%)

Query:    39 ASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYV 98
             ++DMP  +Q  A  CAR   DSM  K  SK LA +LKKEFD  YGPAWHCIVGTSFGS+V
Sbjct:   226 SADMPPFMQIHAVDCARKAFDSME-KFTSKTLASSLKKEFDGVYGPAWHCIVGTSFGSFV 284

Query:    99 THSLGGFLYFSID-KVYILLFKTAVEPLD 126
             THS+GGFLYFS+D K+YILLFKTAV+  D
Sbjct:   285 THSVGGFLYFSMDQKLYILLFKTAVQKAD 313

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0274815 dlcB "cytoplasmic dynein light chain" [Dictyostelium discoideum (taxid:44689)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 38/85 (44%), Positives = 53/85 (62%)

Query:    35 VRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSF 94
             + V+ +DMP  +Q  A +C     +    + D   +A+ +KKEFD  Y P WHCIVG SF
Sbjct:     8 INVKNADMPDFMQQDATECTIKAFEETNIERD---IAMIIKKEFDKKYSPTWHCIVGKSF 64

Query:    95 GSYVTHSLGGFLYFSIDKVYILLFK 119
             GS+VTH    F+YF+I+K  +LLFK
Sbjct:    65 GSFVTHETKNFIYFNINKHSVLLFK 89

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0030286 "dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2093457 AT3G16120 "AT3G16120" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 38/86 (44%), Positives = 52/86 (60%)

Query:    36 RVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFG 95
             +V  +DMP+ +Q +A K A   LD      DS  +A  +KKEFD  YG  W C+VGT+FG
Sbjct:     7 KVEETDMPVKMQMQAMKIASQSLDLFD-VFDSISIAAHIKKEFDERYGSGWQCVVGTNFG 65

Query:    96 SYVTHSLGGFLYFSIDKVYILLFKTA 121
              + THS G F+YF +  +  L+FK A
Sbjct:    66 CFFTHSKGTFIYFHLGTLNFLIFKGA 91

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

UNIPROTKB|Q5F412 DYNLL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/84 (45%), Positives = 53/84 (63%)

Query:    37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
             ++ +DM   +Q  A +CA   L+     ++ K +A  +KKEFD  Y P WHCIVG +FGS
Sbjct:     8 IKNADMSEEMQQDAVECATQALEKY--NIE-KDIAAHIKKEFDKKYNPTWHCIVGRNFGS 64

Query:    97 YVTHSLGGFLYFSIDKVYILLFKT 120
             YVTH    F+YF + +V ILLFK+
Sbjct:    65 YVTHETKHFIYFYLGQVAILLFKS 88

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

ZFIN|ZDB-GENE-040426-1961 dynll1 "dynein, light chain, LC8-type 1" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/84 (45%), Positives = 53/84 (63%)

Query:    37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
             ++ +DM   +Q  A +CA   L+     ++ K +A  +KKEFD  Y P WHCIVG +FGS
Sbjct:     8 IKNADMSEEMQQDAVECATQALEKY--NIE-KDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query:    97 YVTHSLGGFLYFSIDKVYILLFKT 120
             YVTH    F+YF + +V ILLFK+
Sbjct:    65 YVTHETKHFIYFYLGQVAILLFKS 88

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

FB|FBgn0026141 Cdlc2 "Cytoplasmic dynein light chain 2" [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/84 (45%), Positives = 52/84 (61%)

Query:    37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
             ++ +DM   +Q  A  CA   L+     ++ K +A  +KKEFD  Y P WHCIVG +FGS
Sbjct:     8 IKNADMSEEMQQDAVDCATQALEKY--NIE-KDIAAFIKKEFDKKYNPTWHCIVGRNFGS 64

Query:    97 YVTHSLGGFLYFSIDKVYILLFKT 120
             YVTH    F+YF + +V ILLFK+
Sbjct:    65 YVTHETRHFIYFYLGQVAILLFKS 88

GO:0005856 "cytoskeleton" evidence=NAS

GO:0003774 "motor activity" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0007017 "microtubule-based process" evidence=IEA

FB|FBgn0011760 ctp "cut up" [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/84 (45%), Positives = 52/84 (61%)

Query:    37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
             ++ +DM   +Q  A  CA   L+     ++ K +A  +KKEFD  Y P WHCIVG +FGS
Sbjct:     8 IKNADMSEEMQQDAVDCATQALEKY--NIE-KDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query:    97 YVTHSLGGFLYFSIDKVYILLFKT 120
             YVTH    F+YF + +V ILLFK+
Sbjct:    65 YVTHETRHFIYFYLGQVAILLFKS 88

GO:0005856 "cytoskeleton" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007290 "spermatid nucleus elongation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045505 "dynein intermediate chain binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005814 "centriole" evidence=IDA

WB|WBGene00001005 dlc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/84 (45%), Positives = 52/84 (61%)

Query:    37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
             ++ +DM   +Q  A  CA   L+     ++ K +A  +KKEFD  Y P WHCIVG +FGS
Sbjct:     8 IKNADMSDDMQQDAIDCATQALEKY--NIE-KDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query:    97 YVTHSLGGFLYFSIDKVYILLFKT 120
             YVTH    F+YF + +V ILLFK+
Sbjct:    65 YVTHETKHFIYFYLGQVAILLFKS 88

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0006260 "DNA replication" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	1e-85
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	3e-37
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	1e-22

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score =  244 bits (625), Expect = 1e-85
 Identities = 114/128 (89%), Positives = 120/128 (93%), Gaps = 1/128 (0%)

Query: 1   MEAAE-ELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLD 59
           ME AE ELERRSKFL+SLIQKKKAKEQQ+Q D+LNVRVRASDMPL LQN+AF CARD LD
Sbjct: 1   MEGAELELERRSKFLSSLIQKKKAKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILD 60

Query: 60  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 119
           +MPGKLDSKRLALALKKEFDS+YGPAWHCIVGTSFGSYVTHS GGFLYFSIDKVYILLFK
Sbjct: 61  AMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFK 120

Query: 120 TAVEPLDH 127
           TAVEPLD 
Sbjct: 121 TAVEPLDQ 128

Length = 128

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  121 bits (305), Expect = 3e-37
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 33  LNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGT 92
               V+ +DMP  +Q  A +CA + L+        K +A  +KKEFD  YGP WHCIVG 
Sbjct: 1   GKAVVKNADMPEEMQEDAIECAAEALEKFN---VEKDIAAHIKKEFDKKYGPTWHCIVGK 57

Query: 93  SFGSYVTHSLGGFLYFSIDKVYILLFKTA 121
           +FGSYVTH    F+YF I ++  LLFKT 
Sbjct: 58  NFGSYVTHETKHFIYFYIGQLAFLLFKTG 86

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score = 84.5 bits (209), Expect = 1e-22
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 5/88 (5%)

Query: 34  NVRVRASDMPLPLQNKAFKCARDQLDSMPGKLD-SKRLALALKKEFDSSYGPAWHCIVGT 92
              V+ +DM   +Q  A  CA   L+    K +  K +A  +KKEFD  Y P WHCIVG 
Sbjct: 6   KAVVKNADMSEDMQQDAIDCANQALE----KFNIEKDIAAYIKKEFDKKYNPTWHCIVGR 61

Query: 93  SFGSYVTHSLGGFLYFSIDKVYILLFKT 120
           +FGSYVTH    F+YF + +V ILLFK+
Sbjct: 62  NFGSYVTHETKHFIYFYLGQVAILLFKS 89

Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
KOG3430	90	consensus Dynein light chain type 1 [Cytoskeleton]	100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.27
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	85.16

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=9e-51  Score=295.14  Aligned_cols=127  Identities=88%  Similarity=1.321  Sum_probs=120.0

Q ss_pred             Chh-HHHHHHHHHHHHHHHHhhhhhHhhhhccccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 033090            1 MEA-AEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFD   79 (127)
Q Consensus         1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lD   79 (127)
                      ||. .-||+||++||+||||+++++||+...|..++.|+.+|||++||++|+++|.+|+++++...++++||.+||+.||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fD   80 (128)
T PLN03058          1 MEGAELELERRSKFLSSLIQKKKAKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFD   80 (128)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhhHHhhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHh
Confidence            443 4499999999999999999999999999999999999999999999999999999998643478999999999999


Q ss_pred             ccCCCceEEEEcCCceeeEEecCCcEEEEEeCCEEEEEeeeCCCCCCC
Q 033090           80 SSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLDH  127 (127)
Q Consensus        80 kkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~~~~iLlfKt~~~~~~~  127 (127)
                      ++|||+||||||++|||+|||++++||||++|+++||||||+.+|+|.
T Consensus        81 kkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig~~aiLLfKt~~~~~~~  128 (128)
T PLN03058         81 SAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFKTAVEPLDQ  128 (128)
T ss_pred             hhhCCceEEEECCcEEEEEEEcCCcEEEEEECCEEEEEEeccCccCCC
Confidence            999999999999999999999999999999999999999999999984

>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]

Probab=100.00  E-value=1.2e-38  Score=217.62  Aligned_cols=88  Identities=49%  Similarity=0.856  Sum_probs=84.5

Q ss_pred             ccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeC
Q 033090           32 QLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSID  111 (127)
Q Consensus        32 ~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~  111 (127)
                      ..++.|+.+|||++||++|+++|.+|+++|+.  ++++||..||+.||++|||+||||||++|||+|||++++||||++|
T Consensus         3 ~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~--~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g   80 (90)
T KOG3430|consen    3 ERKAVVKATDMPEEMQQEAIELARQALEKFNV--IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLG   80 (90)
T ss_pred             CccceEecCCCChHHHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEec
Confidence            35789999999999999999999999999985  7899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeeeC
Q 033090          112 KVYILLFKTA  121 (127)
Q Consensus       112 ~~~iLlfKt~  121 (127)
                      .++|||||++
T Consensus        81 ~l~illfK~~   90 (90)
T KOG3430|consen   81 VLAILLFKCA   90 (90)
T ss_pred             eEEEEEEecC
Confidence            9999999985

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=1.3e-37  Score=214.02  Aligned_cols=85  Identities=46%  Similarity=0.853  Sum_probs=82.4

Q ss_pred             ccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeCCE
Q 033090           34 NVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKV  113 (127)
Q Consensus        34 ~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~~~  113 (127)
                      ++.|+.+|||++||++|+++|.+|+++++   ++++||++||+.||++|||+||||||++|||+|||++++||||++|++
T Consensus         6 ~~~i~~~dM~~emq~~a~~~~~~Al~~~~---~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~   82 (90)
T PTZ00059          6 KAVVKNADMSEDMQQDAIDCANQALEKFN---IEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQV   82 (90)
T ss_pred             ccEEEECCCCHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCE
Confidence            56899999999999999999999999998   689999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeC
Q 033090          114 YILLFKTA  121 (127)
Q Consensus       114 ~iLlfKt~  121 (127)
                      +|||||++
T Consensus        83 ~vLlfK~~   90 (90)
T PTZ00059         83 AILLFKSG   90 (90)
T ss_pred             EEEEEecC
Confidence            99999985

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=1.4e-36  Score=207.49  Aligned_cols=87  Identities=46%  Similarity=0.857  Sum_probs=81.7

Q ss_pred             ccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeC
Q 033090           32 QLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSID  111 (127)
Q Consensus        32 ~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~  111 (127)
                      +.+++|+.+|||++|+++|+++|.+|+++++   ++++||++||+.||++|||+||||||++|||++||++++|+||+++
T Consensus         3 ~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~---~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~   79 (89)
T PF01221_consen    3 ENKIVIKSSDMPEEMQEEAIELAKEALKKYQ---DEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIG   79 (89)
T ss_dssp             SCSEEEEEEES-HHHHHHHHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEET
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence            3579999999999999999999999999998   7899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeeeC
Q 033090          112 KVYILLFKTA  121 (127)
Q Consensus       112 ~~~iLlfKt~  121 (127)
                      +++||||||+
T Consensus        80 ~~~~li~kt~   89 (89)
T PF01221_consen   80 NIAFLIFKTQ   89 (89)
T ss_dssp             TEEEEEEEE-
T ss_pred             CEEEEEEecC
Confidence            9999999985

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.27  E-value=0.0035  Score=41.32  Aligned_cols=53  Identities=15%  Similarity=0.210  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHhcccCCCceEEEEcC-CceeeEEecCCcEEEEEeCCEEEEEee
Q 033090           66 DSKRLALALKKEFDSSYGPAWHCIVGT-SFGSYVTHSLGGFLYFSIDKVYILLFK  119 (127)
Q Consensus        66 ~~kdIA~~IK~~lDkkyG~~WHcIVG~-~Fgs~vthe~~~fi~F~~~~~~iLlfK  119 (127)
                      +...+++.|.+.+.++||+.+-||++. +|.....+. ..|.-...+++..++|+
T Consensus        23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            689999999999999999999999995 777766665 78888899999999995

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=85.16  E-value=10  Score=31.61  Aligned_cols=55  Identities=11%  Similarity=0.236  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHHhcccCC-CceEEEEcC------Cc--eeeEEecCCcEEE-EEeCCEEEEEeee
Q 033090           66 DSKRLALALKKEFDSSYG-PAWHCIVGT------SF--GSYVTHSLGGFLY-FSIDKVYILLFKT  120 (127)
Q Consensus        66 ~~kdIA~~IK~~lDkkyG-~~WHcIVG~------~F--gs~vthe~~~fi~-F~~~~~~iLlfKt  120 (127)
                      +-.+.|..||+.||+-.- -.+-+||-.      +.  .+...+..+.+|. |.-|+..++||||
T Consensus       187 sn~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS  251 (345)
T PF05075_consen  187 SNEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS  251 (345)
T ss_pred             ChHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence            457899999999999653 368888821      11  1222345555665 5679999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		4e-17
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		1e-16
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		1e-16
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		1e-16
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		2e-16
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		2e-16
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		3e-16
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		3e-16
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		3e-16
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		5e-16
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		5e-16
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		4e-15
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		2e-13

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DMP  LQ  A  CA   L+    + D   +A  +KKEFD  + P WHC+VG +FGS
Sbjct: 8   IKNADMPEDLQQDAIDCANQALEKYNIEKD---IAAFIKKEFDRKHNPTWHCVVGRNFGS 64
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF I +V +LLFK+ 
Sbjct: 65  YVTHETHHFIYFYIGQVAVLLFKSG 89

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  + +CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 4   IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 60
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 61  YVTHETKHFIYFYLGQVAILLFKSG 85

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETRHFIYFYLGQVAILLFKSG 89

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 10  IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 67  YVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  + +CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 97  YVTHSLGGFLYFSIDKVYILLFK 119
           YVTH    F+YF + +V ILLFK
Sbjct: 65  YVTHETRHFIYFYLGQVAILLFK 87

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   ++    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 65  YVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 10  IKNADMSEEMQQDAVDCATQALEKYNIEPD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 67  YVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   ++    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 11  IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKSG 92

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   ++    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 13  IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 69
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF + +V ILLFK+ 
Sbjct: 70  YVTHETKHFIYFYLGQVAILLFKSG 94

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           V+  DM   +Q  A  CA   L     + D   +A  +KKEFD  Y P WHC+VG +FGS
Sbjct: 21  VKNVDMTEEMQIDAIDCANQALQKYNVEKD---IAAHIKKEFDRKYDPTWHCVVGRNFGS 77
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH    F+YF I +V ILLFK+ 
Sbjct: 78  YVTHETKNFIYFYIGQVAILLFKSG 102

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTS--F 94
           ++ +DM   +Q  A  CA   ++    + D   +A  +KKEFD  Y P WHCIVG S  F
Sbjct: 8   IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRSGNF 64
Query: 95  GSYVTHSLGGFLYFSIDKVYILLFKTA 121
           GSYVTH    F+YF + +V ILLFK+ 
Sbjct: 65  GSYVTHETKHFIYFYLGQVAILLFKSG 91

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           V+ASD+   L+      ++D LD    + D   +A  +KK+ D  YG  WH IVG +FGS
Sbjct: 16  VKASDITDKLKEDILTISKDALDKYQLERD---IAGTVKKQLDVKYGNTWHVIVGKNFGS 72
Query: 97  YVTHSLGGFLYFSIDKVYILLFKTA 121
           YVTH  G F+YF I  +  L+FKTA
Sbjct: 73  YVTHEKGHFVYFYIGPLAFLVFKTA 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	3e-35
1yo3_A	102	Dynein light chain 1; structural genomics consorti	8e-34

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  115 bits (291), Expect = 3e-35
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 31  DQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIV 90
           ++    V+ASD+   L+      ++D LD        + +A  +KK+ D  YG  WH IV
Sbjct: 10  NKSTPIVKASDITDKLKEDILTISKDALDKYQ---LERDIAGTVKKQLDVKYGNTWHVIV 66

Query: 91  GTSFGSYVTHSLGGFLYFSIDKVYILLFKTA 121
           G +FGSYVTH  G F+YF I  +  L+FKTA
Sbjct: 67  GKNFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  112 bits (282), Expect = 8e-34
 Identities = 39/102 (38%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 20  KKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFD 79
                            V+  DM   +Q  A  CA   L         K +A  +KKEFD
Sbjct: 4   SHHHHHHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYN---VEKDIAAHIKKEFD 60

Query: 80  SSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTA 121
             Y P WHC+VG +FGSYVTH    F+YF I +V ILLFK+ 
Sbjct: 61  RKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKSG 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-40  Score=227.71  Aligned_cols=90  Identities=40%  Similarity=0.694  Sum_probs=84.5

Q ss_pred             hccccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEE
Q 033090           29 QNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYF  108 (127)
Q Consensus        29 ~~~~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F  108 (127)
                      ++.+.+++|+.+|||++||++|+++|.+|+++++   ++++||++||+.||++|||+||||||++|||+|||++++||||
T Consensus         8 ~~~~~k~~I~~~DM~~emq~~a~~~a~~al~~~~---~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF   84 (97)
T 4ds1_A            8 DENKSTPIVKASDITDKLKEDILTISKDALDKYQ---LERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYF   84 (97)
T ss_dssp             ----CCCEEEEEEECHHHHHHHHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEE
T ss_pred             cccCCccEEEECCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEE
Confidence            4557899999999999999999999999999998   7899999999999999999999999999999999999999999


Q ss_pred             EeCCEEEEEeeeC
Q 033090          109 SIDKVYILLFKTA  121 (127)
Q Consensus       109 ~~~~~~iLlfKt~  121 (127)
                      ++|+++||||||+
T Consensus        85 ~~g~~aiLlfKtg   97 (97)
T 4ds1_A           85 YIGPLAFLVFKTA   97 (97)
T ss_dssp             EETTEEEEEEECC
T ss_pred             EECCEEEEEEecC
Confidence            9999999999986

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=5.1e-40  Score=224.54  Aligned_cols=86  Identities=44%  Similarity=0.816  Sum_probs=83.6

Q ss_pred             cccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeCC
Q 033090           33 LNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDK  112 (127)
Q Consensus        33 ~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~~  112 (127)
                      .++.|+.+|||++||++|+++|.+|+++++   ++++||++||+.||++|||+||||||++|||+|||++++||||++|+
T Consensus         4 ~k~~i~~~dM~~emq~~a~~~a~~al~~~~---~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~   80 (89)
T 3rjs_A            4 RKAVIKNADMPEDLQQDAIDCANQALEKYN---IEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQ   80 (89)
T ss_dssp             CCCEEEEEESCHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETT
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECC
Confidence            378999999999999999999999999998   78999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeeC
Q 033090          113 VYILLFKTA  121 (127)
Q Consensus       113 ~~iLlfKt~  121 (127)
                      ++||||||+
T Consensus        81 ~~iLlfKtg   89 (89)
T 3rjs_A           81 VAVLLFKSG   89 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999999996

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=8.2e-39  Score=223.69  Aligned_cols=87  Identities=45%  Similarity=0.798  Sum_probs=83.2

Q ss_pred             ccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeC
Q 033090           32 QLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSID  111 (127)
Q Consensus        32 ~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~  111 (127)
                      ..++.|+.+|||++||++|+++|.+|+++++   ++++||++||+.||++|||+||||||++|||+|||++++||||++|
T Consensus        16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~---~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g   92 (102)
T 1yo3_A           16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYN---VEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIG   92 (102)
T ss_dssp             --CCCEEETTSCHHHHHHHHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEET
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEEC
Confidence            4588999999999999999999999999998   7899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeeeC
Q 033090          112 KVYILLFKTA  121 (127)
Q Consensus       112 ~~~iLlfKt~  121 (127)
                      +++||||||+
T Consensus        93 ~~aiLlfKt~  102 (102)
T 1yo3_A           93 QVAILLFKSG  102 (102)
T ss_dssp             TEEEEEEECC
T ss_pred             CEEEEEEecC
Confidence            9999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	9e-32

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  105 bits (265), Expect = 9e-32
 Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 37  VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
           ++ +DM   +Q  A  CA   L+        K +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 6   IKNADMSEEMQQDAVDCATQALEKYN---IEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 62

Query: 97  YVTHSLGGFLYFSIDKVYILLFKT 120
           YVTH    F+YF + +V ILLFK+
Sbjct: 63  YVTHETRHFIYFYLGQVAILLFKS 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.4e-39  Score=219.85  Aligned_cols=85  Identities=45%  Similarity=0.841  Sum_probs=82.8

Q ss_pred             ccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeCCE
Q 033090           34 NVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKV  113 (127)
Q Consensus        34 ~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~~~  113 (127)
                      ++.|+.+|||++||++|+++|.+|+++|+   ++++||++||+.||++|||+||||||++|||+|||++++||||++|++
T Consensus         3 k~vik~~DM~~em~~~a~~~~~~al~~~~---~~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~~   79 (87)
T d3e2ba1           3 KAVIKNADMSEEMQQDAVDCATQALEKYN---IEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQV   79 (87)
T ss_dssp             CEEEEEEEECHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETTE
T ss_pred             cceEEECCCCHHHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECCE
Confidence            57899999999999999999999999998   789999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeC
Q 033090          114 YILLFKTA  121 (127)
Q Consensus       114 ~iLlfKt~  121 (127)
                      +|||||||
T Consensus        80 ~~Ll~Ktg   87 (87)
T d3e2ba1          80 AILLFKSG   87 (87)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999996