Citrus Sinensis ID: 033097

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERYNIFTIVSGALFR
Secondary Structure (PSIPRED)
cccHHHHHccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccHHHHccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEcEccHHHHHHHHHHHHHHHHHHcccEccccccccHHHHHHHcccEcccHHHHHHEEEEEEEHHHHcc
Coil and Loop (DISEMBL)
mtlqsslcgsgvstfictprpiiarprpvtqiraqvepseKSVEIMRKFSEQYARrsdtffcvdkSVTSVVIKGLAdhkdslgaplcpcrhyddKAAEAQqgfwncpcvpmreryniFTIVSGALFR
Flexible Loop (DISEMBL)
mtlqsslcgsgvstfictprpiiarprpvtqiraqvepseksveIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERYNIFTIVSGALFR
Low Complexity Region (SEG)
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERYNIFTIVSGALFR
Disordered region (IsUnstruct)
*******CGSGVSTFICTPRPIIARPR*V*******************FSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERYNIFTIVSGAL**
Disordered Region (DISOPRED)
*******CGSGV**********************************RKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERYNIFTIVSGALFR
Disordered Region (DISEMBL)
********GSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERYNIFTIVSGALFR
Disordered Region (DISPRO)
*TLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERYNIFTIVSGALFR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERYNIFTIVSGALFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
O49856	144	Ferredoxin-thioredoxin re	yes	no	0.866	0.763	0.719	1e-40
Q9SJ89	146	Ferredoxin-thioredoxin re	yes	no	0.866	0.753	0.724	2e-40
P41349	148	Ferredoxin-thioredoxin re	N/A	no	0.692	0.594	0.840	2e-39
P41348	144	Ferredoxin-thioredoxin re	N/A	no	0.716	0.631	0.782	3e-39
P41347	152	Ferredoxin-thioredoxin re	N/A	no	0.708	0.592	0.747	1e-36
Q6K471	146	Ferredoxin-thioredoxin re	yes	no	0.582	0.506	0.891	2e-35
Q1XDA1	116	Ferredoxin-thioredoxin re	N/A	no	0.582	0.637	0.702	6e-28
P51386	118	Ferredoxin-thioredoxin re	N/A	no	0.574	0.618	0.712	1e-27
O78461	102	Ferredoxin-thioredoxin re	yes	no	0.622	0.774	0.607	3e-26
Q9TM25	111	Ferredoxin-thioredoxin re	N/A	no	0.582	0.666	0.608	7e-25

>sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1

 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/114 (71%), Positives = 90/114 (78%), Gaps = 4/114 (3%)

Query: 1   MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
           MT Q+S     V + + TP     R R    +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1   MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56

Query: 61  FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRER
Sbjct: 57  FCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRER 110

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.
Glycine max (taxid: 3847)
EC: 1EC: .EC: 8EC: .EC: 7EC: .EC: 2

>sp|Q9SJ89|FTRC_ARATH Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis thaliana GN=FTRC PE=2 SV=1

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 88/116 (75%), Gaps = 6/116 (5%)

Query: 1   MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct: 1   MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER
Sbjct: 57  TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRER 112

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P41349|FTRC2_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea PE=2 SV=1

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/88 (84%), Positives = 81/88 (92%)

Query: 27  RPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPL 86
           RP   I ++VEPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLA+HKDSLGAPL
Sbjct: 27  RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPL 86

Query: 87  CPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           CPCR+YDDKAAEA QGFWNCPCVPMRER
Sbjct: 87  CPCRYYDDKAAEATQGFWNCPCVPMRER 114

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P41348|FTRC1_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea GN=FTRC PE=1 SV=2

 Score =  159 bits (403), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 85/92 (92%), Gaps = 1/92 (1%)

Query: 24  ARPRPVTQ-IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
           A PR  ++ IRAQ +PS+KS+E+MRKFSEQ+ R+SDT+FCVDKSVT+VVIKGLADH+D+L
Sbjct: 19  ASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTL 78

Query: 83  GAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           GAPLCPCRHYDDK AEA+QGFWNCPCVPMRER
Sbjct: 79  GAPLCPCRHYDDKEAEAKQGFWNCPCVPMRER 110

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P41347|FTRC_MAIZE Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays GN=FTRC PE=2 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 80/95 (84%), Gaps = 5/95 (5%)

Query: 24  ARPRPVTQIRAQVE----PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHK 79
            RPR    +RAQ       ++KSVE+MRKFSEQYARRS+TFFC DK+VT+VVIKGLADH+
Sbjct: 25  GRPRRCA-VRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHR 83

Query: 80  DSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           D+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRER
Sbjct: 84  DTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRER 118

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|Q6K471|FTRC_ORYSJ Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0249900 PE=2 SV=1

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 70/74 (94%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           KS+EIMRKFSEQYARRS+TFFC +KSVT+VVIKGLADHKD LGAPLCPCRHYDDKAAE  
Sbjct: 39  KSLEIMRKFSEQYARRSNTFFCSEKSVTAVVIKGLADHKDQLGAPLCPCRHYDDKAAEVA 98

Query: 101 QGFWNCPCVPMRER 114
           QGFWNCPCVPMRER
Sbjct: 99  QGFWNCPCVPMRER 112

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|Q1XDA1|FTRC_PORYE Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra yezoensis GN=ftrB PE=3 SV=2

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 62/74 (83%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           +++E MRKFSE YA+R+ TFFC+D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE  
Sbjct: 11  ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEIS 70

Query: 101 QGFWNCPCVPMRER 114
             +WNCPCVPMRER
Sbjct: 71  ATYWNCPCVPMRER 84

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Porphyra yezoensis (taxid: 2788)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P51386|FTRC_PORPU Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra purpurea GN=ftrB PE=3 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 60/73 (82%)

Query: 42  SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
           ++E MRKFSE YA+R+ TFFC D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE   
Sbjct: 12  NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPCRHYEDKKAEISA 71

Query: 102 GFWNCPCVPMRER 114
            +WNCPCVPMRER
Sbjct: 72  TYWNCPCVPMRER 84

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Porphyra purpurea (taxid: 2787)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|O78461|FTRC_GUITH Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia theta GN=ftrB PE=3 SV=1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 60/79 (75%)

Query: 36  VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDK 95
           +E    S   M+KF+E YA+R++TFFC D S+T +V++GLA HKD  GAPLCPCRHYDDK
Sbjct: 2   IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPCRHYDDK 61

Query: 96  AAEAQQGFWNCPCVPMRER 114
           + E    +WNCPCVPMRER
Sbjct: 62  SEEVASTYWNCPCVPMRER 80

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Guillardia theta (taxid: 55529)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|Q9TM25|FTRC_CYACA Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium caldarium GN=ftrB PE=3 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 60/74 (81%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           K++E + KF+E YA+ S T+FC+D+S+T++VI+GLA HKD  GAPLCPCRHY++K  E  
Sbjct: 6   KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPCRHYENKKTEVL 65

Query: 101 QGFWNCPCVPMRER 114
             +WNCPCVPMRER
Sbjct: 66  AAYWNCPCVPMRER 79

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Cyanidium caldarium (taxid: 2771)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
225452570	145	PREDICTED: ferredoxin-thioredoxin reduct	0.866	0.758	0.773	5e-43
147852954	160	hypothetical protein VITISV_006145 [Viti	0.866	0.687	0.773	7e-43
116779666	150	unknown [Picea sitchensis] gi|116785080|	0.874	0.74	0.714	2e-41
14275859	148	ferredoxin-thioredoxin-reductase catalyt	0.858	0.736	0.732	2e-41
388494172	144	unknown [Lotus japonicus]	0.724	0.638	0.858	6e-41
346467615	155	hypothetical protein [Amblyomma maculatu	0.866	0.709	0.710	1e-39
407971016	144	ferredoxin-thioredoxin reductase catalyt	0.866	0.763	0.719	7e-39
15224046	146	Ferredoxin-thioredoxin reductase catalyt	0.866	0.753	0.724	1e-38
297831548	146	ferredoxin thioredoxin reductase catalyt	0.866	0.753	0.724	1e-38
449492658	187	PREDICTED: ferredoxin-thioredoxin reduct	0.653	0.443	0.867	4e-38

>gi|225452570|ref|XP_002280653.1| PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Vitis vinifera] gi|296087725|emb|CBI34981.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 98/115 (85%), Gaps = 5/115 (4%)

Query: 1   MTLQ-SSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDT 59
           M+LQ SS    G+S+F+  PR    R R V +IRA+VEPS+KSVEIMRKFSEQYAR+S T
Sbjct: 1   MSLQASSSYAFGISSFVSPPR----RVRHVPEIRAKVEPSDKSVEIMRKFSEQYARKSGT 56

Query: 60  FFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           +FCVDK VTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEA QGFWNCPCVPMRER
Sbjct: 57  YFCVDKGVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAGQGFWNCPCVPMRER 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852954|emb|CAN81270.1| hypothetical protein VITISV_006145 [Vitis vinifera]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 98/115 (85%), Gaps = 5/115 (4%)

Query: 1   MTLQ-SSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDT 59
           M+LQ SS    G+S+F+  PR    R R V +IRA+VEPS+KSVEIMRKFSEQYAR+S T
Sbjct: 1   MSLQASSSYAFGISSFVSPPR----RVRHVPEIRAKVEPSDKSVEIMRKFSEQYARKSGT 56

Query: 60  FFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           +FCVDK VTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEA QGFWNCPCVPMRER
Sbjct: 57  YFCVDKGVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAGQGFWNCPCVPMRER 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779666|gb|ABK21385.1| unknown [Picea sitchensis] gi|116785080|gb|ABK23584.1| unknown [Picea sitchensis]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 93/112 (83%), Gaps = 1/112 (0%)

Query: 3   LQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFC 62
           + +S+   GVS+   +    I   +   Q+RA+VEPS KSVEIMRKFSEQYARRSDT+FC
Sbjct: 6   INTSISNLGVSSLKSSANARI-ESKYSMQVRAKVEPSNKSVEIMRKFSEQYARRSDTYFC 64

Query: 63  VDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           VDK+VTSVVIKGLA+HKD+LGAPLCPCRHYDDK AEA+QGFWNCPCVPMRER
Sbjct: 65  VDKAVTSVVIKGLAEHKDTLGAPLCPCRHYDDKVAEAEQGFWNCPCVPMRER 116

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14275859|emb|CAC39620.1| ferredoxin-thioredoxin-reductase catalytic subunit B [Solanum tuberosum]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 96/116 (82%), Gaps = 7/116 (6%)

Query: 2   TLQSSL---CGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           TLQ+S     G G+S+F   P+P   R   V    A++EPSEKSVEIMRKFSEQYARRS+
Sbjct: 3   TLQASTSYSVGFGISSFATRPKPSTHRCLTV----AKMEPSEKSVEIMRKFSEQYARRSE 58

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           T+FC+DK VTSVVIKGLA+HKD+LGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER
Sbjct: 59  TYFCMDKGVTSVVIKGLAEHKDTLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494172|gb|AFK35152.1| unknown [Lotus japonicus]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 79/92 (85%), Positives = 85/92 (92%)

Query: 23  IARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
           + R R +  +RAQVEPSEKS+EIMRKFSEQYAR+S T+FCVDKSVTSVVIKGLADHKDSL
Sbjct: 19  LRRHRNLHVVRAQVEPSEKSIEIMRKFSEQYARKSGTYFCVDKSVTSVVIKGLADHKDSL 78

Query: 83  GAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           GAPLCPCRHYDDK AEAQQGFWNCPCVPMRER
Sbjct: 79  GAPLCPCRHYDDKPAEAQQGFWNCPCVPMRER 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346467615|gb|AEO33652.1| hypothetical protein [Amblyomma maculatum]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 93/114 (81%), Gaps = 4/114 (3%)

Query: 1   MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
           M++QSS  G G+     +P P   R R  +++ A+ EPS+KSVE+MRKFSEQYARRS T+
Sbjct: 21  MSIQSSFSGVGLPCL--SPAPTTRRSR--SRVFAKAEPSDKSVELMRKFSEQYARRSGTY 76

Query: 61  FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           FCVDK VTSVVIKGLADHKDS+GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER
Sbjct: 77  FCVDKGVTSVVIKGLADHKDSVGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRER 130

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|407971016|ref|NP_001236326.1| ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Glycine max] gi|3913670|sp|O49856.1|FTRC_SOYBN RecName: Full=Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic; Short=FTR-C; Flags: Precursor gi|2765445|emb|CAA75356.1| ferredoxin thioredoxin reductase precursor [Glycine max]

 Score =  164 bits (416), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/114 (71%), Positives = 90/114 (78%), Gaps = 4/114 (3%)

Query: 1   MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
           MT Q+S     V + + TP     R R    +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1   MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56

Query: 61  FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRER
Sbjct: 57  FCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRER 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224046|ref|NP_178547.1| Ferredoxin-thioredoxin reductase catalytic chain [Arabidopsis thaliana] gi|75206241|sp|Q9SJ89.1|FTRC_ARATH RecName: Full=Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic; Short=FTR-C; Flags: Precursor gi|4544427|gb|AAD22336.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|17380642|gb|AAL36151.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|21436083|gb|AAM51242.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|21593637|gb|AAM65604.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|330250764|gb|AEC05858.1| Ferredoxin-thioredoxin reductase catalytic chain [Arabidopsis thaliana]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 88/116 (75%), Gaps = 6/116 (5%)

Query: 1   MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct: 1   MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER
Sbjct: 57  TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRER 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831548|ref|XP_002883656.1| ferredoxin thioredoxin reductase catalytic beta chain family protein [Arabidopsis lyrata subsp. lyrata] gi|297329496|gb|EFH59915.1| ferredoxin thioredoxin reductase catalytic beta chain family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 88/116 (75%), Gaps = 6/116 (5%)

Query: 1   MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct: 1   MNLQAVSCSFGFVSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
           T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER
Sbjct: 57  TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRER 112

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492658|ref|XP_004159064.1| PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucumis sativus]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/83 (86%), Positives = 77/83 (92%)

Query: 32  IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRH 91
           +RAQ EPSEKSVEIMRKFSEQYAR+S T+FCVDK VT+VVIKGLADHKD+LGAPLCPCRH
Sbjct: 71  VRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVIKGLADHKDTLGAPLCPCRH 130

Query: 92  YDDKAAEAQQGFWNCPCVPMRER 114
           YDDK AE  QGFWNCPCVPMRER
Sbjct: 131 YDDKPAEVAQGFWNCPCVPMRER 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2049228	146	AT2G04700 [Arabidopsis thalian	0.866	0.753	0.724	7.8e-39
UNIPROTKB|Q55389	118	ftrC "Ferredoxin-thioredoxin r	0.598	0.644	0.657	1.2e-26

TAIR|locus:2049228 AT2G04700 [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 84/116 (72%), Positives = 88/116 (75%)

Query:     1 MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
             M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct:     1 MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query:    59 TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
             T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER
Sbjct:    57 TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRER 112

GO:0008937 "ferredoxin-NAD(P) reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030385 "ferredoxin:thioredoxin reductase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q55389 ftrC "Ferredoxin-thioredoxin reductase, catalytic chain" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 50/76 (65%), Positives = 64/76 (84%)

Query:    39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
             + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct:     8 NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 67

Query:    99 AQQGFWNCPCVPMRER 114
              +  FWNCPCVPMRER
Sbjct:    68 VKNTFWNCPCVPMRER 83


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      127       127   0.00091  102 3  11 22  0.47    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.82u 0.11s 13.93t   Elapsed:  00:00:00
  Total cpu time:  13.82u 0.11s 13.93t   Elapsed:  00:00:00
  Start:  Fri May 10 14:15:44 2013   End:  Fri May 10 14:15:44 2013

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJ89	FTRC_ARATH	1, ., 8, ., 7, ., 2	0.7241	0.8661	0.7534	yes	no
Q6K471	FTRC_ORYSJ	1, ., 8, ., 7, ., 2	0.8918	0.5826	0.5068	yes	no
O78461	FTRC_GUITH	1, ., 8, ., 7, ., 2	0.6075	0.6220	0.7745	yes	no
O49856	FTRC_SOYBN	1, ., 8, ., 7, ., 2	0.7192	0.8661	0.7638	yes	no
P41348	FTRC1_SPIOL	1, ., 8, ., 7, ., 2	0.7826	0.7165	0.6319	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.8.7.2	0.946
3rd Layer	1.8.7	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
CHL00165	116	CHL00165, ftrB, ferredoxin thioreductase subunit b	9e-44
pfam02943	105	pfam02943, FeThRed_B, Ferredoxin thioredoxin reduc	4e-43
COG4802	110	COG4802, FtrB, Ferredoxin-thioredoxin reductase, c	1e-25

>gnl|CDD|214382 CHL00165, ftrB, ferredoxin thioreductase subunit beta; Validated

 Score =  138 bits (350), Expect = 9e-44
 Identities = 50/74 (67%), Positives = 61/74 (82%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           +S+E MRKF+E YA+R++TFFC D S+T+VVI+GLA HKD  GAPLCPCRHY+DK  E  
Sbjct: 11  ESLEAMRKFAETYAKRTNTFFCSDLSITAVVIEGLARHKDEYGAPLCPCRHYEDKKVEVS 70

Query: 101 QGFWNCPCVPMRER 114
             +WNCPCVPMRER
Sbjct: 71  AAYWNCPCVPMRER 84

Length = 116

>gnl|CDD|145870 pfam02943, FeThRed_B, Ferredoxin thioredoxin reductase catalytic beta chain

 Score =  136 bits (345), Expect = 4e-43
 Identities = 50/74 (67%), Positives = 58/74 (78%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           KS+E MRKF+E+YA+RS T+FC D  VT+VVI+GLA HKD  G PLCPCRHY+DK AE  
Sbjct: 1   KSLEKMRKFAEKYAKRSGTYFCPDPEVTAVVIEGLARHKDRYGKPLCPCRHYEDKEAEVS 60

Query: 101 QGFWNCPCVPMRER 114
              W CPCVPMRER
Sbjct: 61  ADDWICPCVPMRER 74

Length = 105

>gnl|CDD|227139 COG4802, FtrB, Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]

 Score = 92.6 bits (230), Expect = 1e-25
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           S++ +  M +F+EQYA +S      D+  T+ V++GLA +K+  G P CPCR    K  E
Sbjct: 2   SDEELNKMYRFTEQYAEKSGYRLNPDREFTAEVLRGLASNKERYGYPSCPCRLVTGKEEE 61

Query: 99  AQQGFWNCPCVP----MRER 114
            +     CPCV     +RE 
Sbjct: 62  DKD--IVCPCVYRDDDIREY 79

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
CHL00165	116	ftrB ferredoxin thioreductase subunit beta; Valida	100.0
PF02943	108	FeThRed_B: Ferredoxin thioredoxin reductase cataly	100.0
COG4802	110	FtrB Ferredoxin-thioredoxin reductase, catalytic s	100.0
PF05511	99	ATP-synt_F6: Mitochondrial ATP synthase coupling f	90.78

>CHL00165 ftrB ferredoxin thioreductase subunit beta; Validated

Probab=100.00  E-value=1.1e-43  Score=263.30  Aligned_cols=90  Identities=56%  Similarity=1.078  Sum_probs=86.6

Q ss_pred             cCCcCHHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCcccccc
Q 033097           35 QVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER  114 (127)
Q Consensus        35 ~~~~se~~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK~ryG~~~CPCR~~~dkE~ev~d~diICPC~y~~e~  114 (127)
                      +...+++++|+|++|+++||+++||+||||+++|+.||+|||+||++||+||||||+++|+++|+++++|||||++|+|+
T Consensus         5 ~~~~~~~~~e~m~~f~ekya~~~G~~fnpD~~vt~~Vi~GLa~nK~~yG~p~CPCR~~~~k~~e~~~~~~iCPCv~m~e~   84 (116)
T CHL00165          5 NEKSKPESLEAMRKFAETYAKRTNTFFCSDLSITAVVIEGLARHKDEYGAPLCPCRHYEDKKVEVSAAYWNCPCVPMRER   84 (116)
T ss_pred             ccccchhhHHHHHHHHHHHHHHhCCeeCCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcHHHhhcCCeecCCHhHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEeeecc
Q 033097          115 YNIFTIVSGA  124 (127)
Q Consensus       115 G~ChCgLf~~  124 (127)
                      |+||||||+.
T Consensus        85 g~CHC~LF~t   94 (116)
T CHL00165         85 KECHCMLFLT   94 (116)
T ss_pred             CCceEeeeec
Confidence            9999999985

>PF02943 FeThRed_B: Ferredoxin thioredoxin reductase catalytic beta chain; InterPro: IPR004209 Ferredoxin thioredoxin reductase is a [4FE-4S] protein present in organisms performing oxygenic photosynthesis, and plays an important role in the ferredoxin/thioredoxin regulatory chain

Probab=100.00  E-value=1.9e-41  Score=247.94  Aligned_cols=84  Identities=37%  Similarity=0.554  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCccc----ccccc
Q 033097           41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPM----RERYN  116 (127)
Q Consensus        41 ~~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK~ryG~~~CPCR~~~dkE~ev~d~diICPC~y~----~e~G~  116 (127)
                      +++|+|++|+++||+++||+||||+++|+.|++||++||++||++|||||++++++++++|+||||||+++    .++|+
T Consensus         1 ~~le~~~~~~~~~a~~~G~~~NpD~~~~~~v~~GL~~nk~~yG~~~CPCr~~~~~~ee~~d~~iiCPC~~~r~~~~~~G~   80 (108)
T PF02943_consen    1 KELEKMYKFLEKYAEKSGYKLNPDEEVTDDVLEGLARNKERYGYPYCPCRLASGKEEEVKDRDIICPCVPYREDDIEYGH   80 (108)
T ss_dssp             HHHHHHHHHHHHHHHHTT-B-BSSHHHHHHHHHHHHHHHHHHSS-B-SSC--S-HHHHHHH-TTBSS-HHHHHH------
T ss_pred             ChHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCchhhhccCCeecCCHHHHhhcccccc
Confidence            68999999999999999999999999999999999999999999999999999887879999999999963    47999


Q ss_pred             eeEeeecc
Q 033097          117 IFTIVSGA  124 (127)
Q Consensus       117 ChCgLf~~  124 (127)
                      ||||||+.
T Consensus        81 ChC~Lf~~   88 (108)
T PF02943_consen   81 CHCGLFVS   88 (108)
T ss_dssp             -TTSSSB-
T ss_pred             ceEeeeEC
Confidence            99999985

It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit alpha and subunit beta. Subunit alpha is the variable subunit, and beta is the catalytic chain []. The structure of the beta subunit has been determined and found to fold around the FeS cluster [].; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0055114 oxidation-reduction process; PDB: 2PUK_E 2PVD_A 2PVG_A 2PUO_A 2PU9_A 1DJ7_A 2PVO_A.

>COG4802 FtrB Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]

Probab=100.00  E-value=1.5e-39  Score=238.27  Aligned_cols=84  Identities=32%  Similarity=0.562  Sum_probs=79.4

Q ss_pred             cCHHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHhhhCCCCCCCcccc-chhhhhhCCceeecCcc----cc
Q 033097           38 PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYD-DKAAEAQQGFWNCPCVP----MR  112 (127)
Q Consensus        38 ~se~~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK~ryG~~~CPCR~~~-dkE~ev~d~diICPC~y----~~  112 (127)
                      .+++++++|++|+++||+|+||+||||.++|+.|++||+.||++||+++||||+++ ++|+   |++|||||+|    ++
T Consensus         1 ~~~e~l~~my~~~eq~AeksG~~lnpD~e~~~~v~~gL~~~ke~yG~~~CPCRl~~g~eee---dk~ivCPCvy~~ddi~   77 (110)
T COG4802           1 ESDEELNKMYRFTEQYAEKSGYRLNPDREFTAEVLRGLASNKERYGYPSCPCRLVTGKEEE---DKDIVCPCVYRDDDIR   77 (110)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCceeCCCHHHHHHHHHHHHHhHHHhCCCCCCeecccCCHHH---hhceeccCcCCccchh
Confidence            36899999999999999999999999999999999999999999999999999999 6666   7779999999    69


Q ss_pred             cccceeEeeecc
Q 033097          113 ERYNIFTIVSGA  124 (127)
Q Consensus       113 e~G~ChCgLf~~  124 (127)
                      +||.||||||++
T Consensus        78 e~g~C~C~Lyl~   89 (110)
T COG4802          78 EYGECYCGLYLS   89 (110)
T ss_pred             hhCceeEEEEec
Confidence            999999999985

>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.78  E-value=0.46  Score=34.88  Aligned_cols=81  Identities=15%  Similarity=0.185  Sum_probs=40.4

Q ss_pred             CcccccccccccccccCCCccccccCCcceeeec--cCCcCHH-HHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHH
Q 033097            1 MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRA--QVEPSEK-SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLAD   77 (127)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~se~-~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~   77 (127)
                      |.+|+-+.++..++.+...+    |.-...++.+  ..+|.++ =+++++++..|-..+.|=-.++++++-..+-+-|.+
T Consensus         1 m~~~~~~~~~~~~~~s~~~~----Rni~~sa~~~~k~~DPIQklFldKIREY~~Ksks~gGklVD~~Pe~~kel~eel~k   76 (99)
T PF05511_consen    1 MALQRRLSSLLRSAVSVHLR----RNIGTSAVAFNKALDPIQKLFLDKIREYNQKSKSSGGKLVDAGPEYEKELNEELEK   76 (99)
T ss_dssp             ------------------------------------S--TTTHHHHHHHHHHHHHHTTTSS-STT--THHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHH----HHhhhhHHHHhcccChHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHH
Confidence            67777444444444443333    2222223322  2456555 478999999999999998999999999999999999


Q ss_pred             hHhhhCCC
Q 033097           78 HKDSLGAP   85 (127)
Q Consensus        78 nK~ryG~~   85 (127)
                      -...||..
T Consensus        77 L~r~YG~g   84 (99)
T PF05511_consen   77 LARQYGGG   84 (99)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHhCCc
Confidence            99999864

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
1dj7_A	117	Crystal Structure Of Ferredoxin Thioredoxin Reducta		8e-29
2puk_A	109	Crystal Srtucture Of The Binary Complex Between Fer		1e-28
2pu9_A	110	Crystal Srtucture Of The Binary Complex Between Fer		1e-28
2pvg_A	108	Crystal Srtucture Of The Binary Complex Between Fer		5e-28
2pvd_A	107	Crystal Srtucture Of The Reduced Ferredoxin:thiored		2e-27

>pdb|1DJ7|A Chain A, Crystal Structure Of Ferredoxin Thioredoxin Reductase Length = 117

Iteration: 1
 Score =  122 bits (305), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 64/76 (84%)
Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 7   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 66
Query: 99  AQQGFWNCPCVPMRER 114
            +  FWNCPCVPMRER
Sbjct: 67  VKNTFWNCPCVPMRER 82

>pdb|2PUK|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 109

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 64/76 (84%)
Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 1   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 60
Query: 99  AQQGFWNCPCVPMRER 114
            +  FWNCPCVPMRER
Sbjct: 61  VKNTFWNCPCVPMRER 76

>pdb|2PU9|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 110

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 63/74 (85%)
Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE +
Sbjct: 2   KTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVK 61
Query: 101 QGFWNCPCVPMRER 114
             FWNCPCVPMRER
Sbjct: 62  NTFWNCPCVPMRER 75

>pdb|2PVG|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin And Ferredoxin:thioredoxin Reductase Length = 108

Iteration: 1
 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 62/73 (84%)
Query: 42  SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
           ++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE + 
Sbjct: 3   TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKN 62
Query: 102 GFWNCPCVPMRER 114
            FWNCPCVPMRER
Sbjct: 63  TFWNCPCVPMRER 75

>pdb|2PVD|A Chain A, Crystal Srtucture Of The Reduced Ferredoxin:thioredoxin Reductase Length = 107

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 59/69 (85%)
Query: 46  MRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWN 105
           M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY DK AE +  FWN
Sbjct: 4   MKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYADKEAEVKNTFWN 63
Query: 106 CPCVPMRER 114
           CPCVPMRER
Sbjct: 64  CPCVPMRER 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
1dj7_A	117	Ferredoxin thioredoxin reductase: catalytic chain;	6e-35

>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A Length = 117

 Score =  115 bits (290), Expect = 6e-35
 Identities = 50/81 (61%), Positives = 65/81 (80%)

Query: 34  AQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYD 93
           +    + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+
Sbjct: 2   SSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYE 61

Query: 94  DKAAEAQQGFWNCPCVPMRER 114
           DK AE +  FWNCPCVPMRER
Sbjct: 62  DKEAEVKNTFWNCPCVPMRER 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
1dj7_A	117	Ferredoxin thioredoxin reductase: catalytic chain;	100.0

>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A

Probab=100.00  E-value=4.6e-44  Score=264.33  Aligned_cols=91  Identities=55%  Similarity=1.077  Sum_probs=84.2

Q ss_pred             ccCCcCHHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCccccc
Q 033097           34 AQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRE  113 (127)
Q Consensus        34 ~~~~~se~~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK~ryG~~~CPCR~~~dkE~ev~d~diICPC~y~~e  113 (127)
                      .+++++++++++|++|+++||+++||+||||+++|+.|++||++||++||+||||||++.|+|++++.++|||||+|+++
T Consensus         2 ~~~~~~~~~~e~~~~f~ek~ae~~G~~~NpD~evt~~vi~GLa~nk~~yG~~~CPCR~~gdke~d~~~~~iiCPC~~~re   81 (117)
T 1dj7_A            2 SSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRE   81 (117)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCSSSCCSCHHHHHHHCTTBSSCHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCChhhhcccCCeecCCcChhh
Confidence            35789999999999999999999999999999999999999999999999999999999999998888889999999999


Q ss_pred             ccceeEeeecc
Q 033097          114 RYNIFTIVSGA  124 (127)
Q Consensus       114 ~G~ChCgLf~~  124 (127)
                      +|+||||||+.
T Consensus        82 ~G~ChC~Lfvt   92 (117)
T 1dj7_A           82 RKECHCMLFLT   92 (117)
T ss_dssp             HCCCTTSSSBC
T ss_pred             cCceeEeeeec
Confidence            99999999985

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d2pu9a1	108	g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductas	7e-37

>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]} Length = 108

class: Small proteins
fold: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
superfamily: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
family: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
domain: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
species: Synechocystis sp. [TaxId: 1143]

 Score =  119 bits (300), Expect = 7e-37
 Identities = 50/75 (66%), Positives = 63/75 (84%)

Query: 40  EKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEA 99
            K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE 
Sbjct: 1   NKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEV 60

Query: 100 QQGFWNCPCVPMRER 114
           +  FWNCPCVPMRER
Sbjct: 61  KNTFWNCPCVPMRER 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d2pu9a1	108	Ferredoxin thioredoxin reductase (FTR), catalytic	100.0

>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}

class: Small proteins
fold: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
superfamily: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
family: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
domain: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=3.4e-44  Score=260.43  Aligned_cols=85  Identities=59%  Similarity=1.156  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCcccccccceeE
Q 033097           40 EKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERYNIFT  119 (127)
Q Consensus        40 e~~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK~ryG~~~CPCR~~~dkE~ev~d~diICPC~y~~e~G~ChC  119 (127)
                      ++++|+|++|+++||+++||+||||+++|+.||+|||+||++||++|||||+++++++|++++.|||||+||+++|+|||
T Consensus         1 dk~le~~~~f~e~ya~~~G~~~npD~~v~~~vi~GLa~nk~~yG~~~CPCr~~~gk~ee~k~~~~iCPC~~~~e~g~ChC   80 (108)
T d2pu9a1           1 NKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHC   80 (108)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCTTBCCSCHHHHHHHCTTBSSCHHHHHHCCCTT
T ss_pred             ChhHHHHHHHHHHHHHHcCceeCCCHHHHHHHHHHHHHHHHHcCCCCCCcccCCCcHHHhhcCceecCCcChhhcCeeeE
Confidence            58999999999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             eeecc
Q 033097          120 IVSGA  124 (127)
Q Consensus       120 gLf~~  124 (127)
                      |||+.
T Consensus        81 ~Lf~t   85 (108)
T d2pu9a1          81 MLFLT   85 (108)
T ss_dssp             SSSBC
T ss_pred             EEEec
Confidence            99985