Citrus Sinensis ID: 033132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIKDVVC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEEHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHEcccccEEEEcccccccHHHEHHHHHHHHEEEEEEEEcc
Coil and Loop (DISEMBL)
MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPasllfhrsqippltlpiLSAFFLLGFLGYAKFYFFDLvagfflfdynkfscfysftcgiyCVTVLVIIKDVVC
Flexible Loop (DISEMBL)
MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIKDVVC
Low Complexity Region (SEG)
MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIKDVVC
Disordered region (IsUnstruct)
****GLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIKDVV*
Disordered Region (DISOPRED)
*****LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIKDVVC
Disordered Region (DISEMBL)
MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIKDVVC
Disordered Region (DISPRO)
****GLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIKDVVC
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIKDVVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
F4I5D5	375	WAT1-related protein At1g	yes	no	0.603	0.202	0.417	1e-09
Q9ZUI8	374	WAT1-related protein At1g	no	no	0.603	0.203	0.443	4e-09
F4KHA8	370	WAT1-related protein At5g	no	no	0.706	0.240	0.389	1e-06
Q9FL08	368	WAT1-related protein At5g	no	no	0.595	0.203	0.434	2e-06
Q9LXX8	377	WAT1-related protein At3g	no	no	0.571	0.190	0.333	3e-05
Q9M131	365	WAT1-related protein At4g	no	no	0.698	0.241	0.318	4e-05
Q945L4	339	WAT1-related protein At5g	no	no	0.571	0.212	0.410	6e-05
Q8GXB4	374	WAT1-related protein At1g	no	no	0.714	0.240	0.301	6e-05
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.579	0.192	0.356	8e-05
F4IJ08	394	WAT1-related protein At2g	no	no	0.571	0.182	0.333	0.0001

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 6  LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPP 65
          L P + M + E   + L    K A++ GMS  VFV Y+NAF S++LLP S LFHR++   
Sbjct: 10 LVPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTE 69

Query: 66 LTL---PILSAFFLLGFLG 81
           ++   P+L   F LGF G
Sbjct: 70 QSIFSWPLLVRVFFLGFTG 88

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUI8|WTR9_ARATH WAT1-related protein At1g60050 OS=Arabidopsis thaliana GN=At1g60050 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 6  LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ--- 62
          + P I M + E   + L    K A++ GMS  VF+ Y+NA  SL+LLP S  FHR +   
Sbjct: 11 IVPFIVMALMEACTIALTILAKTALTGGMSPFVFIVYTNALGSLLLLPYSFYFHRDESDD 70

Query: 63 IPPLTLPILSAFFLLGFLG 81
           P LT P L   FLLGF G
Sbjct: 71 EPFLTKPSLVRIFLLGFTG 89

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 8   PVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRS-QIPPL 66
           P   M+  EC  VG     KAA   G+S  VFVFY+   A+LVLLP SL+F RS ++P  
Sbjct: 21  PFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLPSA 80

Query: 67  TLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNK 101
             P+    FLL  +G     F  L+ G    +Y+ 
Sbjct: 81  KTPVFFNIFLLALVG-----FMSLIVGCKGIEYSS 110

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 8  PVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRS-QIPPL 66
          P   M   ECA VG     KAA   G+S  VFVFYS   ++L+LLP S++F RS ++P  
Sbjct: 20 PFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRRLPAA 79

Query: 67 TLPILSAFFLLGFLGY 82
            P+    FLLG +G+
Sbjct: 80 KSPLFFKIFLLGLVGF 95

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX8|WTR27_ARATH WAT1-related protein At3g56620 OS=Arabidopsis thaliana GN=At3g56620 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 12/84 (14%)

Query: 10 IGMMMAECAQ------------VGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLL 57
          +G+ M+E A+             G+    K  +  GMS+ V V Y NAFA+  + P +LL
Sbjct: 1  MGLKMSESAKPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALL 60

Query: 58 FHRSQIPPLTLPILSAFFLLGFLG 81
            R   P +T PI    F+L  LG
Sbjct: 61 SERKVRPKMTFPIFMQIFVLALLG 84

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M131|WTR28_ARATH WAT1-related protein At4g01430 OS=Arabidopsis thaliana GN=At4g01430 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%)

Query: 1  MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHR 60
          M +   APVI M+++  A   +    K A+  G+++++F  Y  A ++L+L+P S ++ R
Sbjct: 2  MKEEQWAPVIVMLISSVAMGSVNALVKKALDVGVNHMIFGAYRMAISALILVPFSYIWER 61

Query: 61 SQIPPLTLPILSAFFLLGFLGYAKFYFF 88
             P LT  +L   F+ G LG +   FF
Sbjct: 62 KTRPQLTFMLLCEHFISGLLGASLMQFF 89

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 12 MMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ-IPPLTLPI 70
          M++ E + VG+    KAA S G+S  V + YS  F SL+LLP +    RS+ +PPLT  I
Sbjct: 17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query: 71 LSAFFLLGFLGYA 83
          L    +LG +  A
Sbjct: 77 LCNMGILGLIASA 89

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 1  MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHR 60
          M K  + P + M++ +    G+    K AM  GM  L+ V Y   FA++   P +    R
Sbjct: 1  MAKSDMLPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLER 60

Query: 61 SQIPPLTLPILSAFF---LLGFLGYAKFYFFDL 90
             P +TL IL   F   + G  G    YF  L
Sbjct: 61 KTRPKITLRILVQVFFCSITGATGNQVLYFVGL 93

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%)

Query: 8  PVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLT 67
          P I M++ +    G+    KA ++ GMSN V V Y +A A++V+ P +  F +   P +T
Sbjct: 15 PFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVRPKMT 74

Query: 68 LPILSAFFLLGFL 80
          L I     LLG L
Sbjct: 75 LMIFFKISLLGLL 87

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 10 IGMMMAECAQ------------VGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLL 57
          +G+ M+E A+             G+    K  +  GMS+ V V Y NAFA+  + P +LL
Sbjct: 1  MGLRMSESAKPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALL 60

Query: 58 FHRSQIPPLTLPILSAFFLLGFLG 81
            R     +T PI    FLL  LG
Sbjct: 61 SERKVRSKMTFPIFMRIFLLALLG 84

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
224099697	355	predicted protein [Populus trichocarpa]	0.746	0.264	0.627	7e-26
224057230	355	predicted protein [Populus trichocarpa]	0.626	0.222	0.662	3e-21
224073013	339	predicted protein [Populus trichocarpa]	0.547	0.203	0.657	2e-18
388505090	173	unknown [Medicago truncatula]	0.642	0.468	0.548	2e-17
357463769	345	Auxin-induced protein 5NG4 [Medicago tru	0.642	0.234	0.548	3e-17
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.658	0.237	0.6	4e-17
296086518	356	unnamed protein product [Vitis vinifera]	0.571	0.202	0.638	2e-15
359473421	347	PREDICTED: auxin-induced protein 5NG4 [V	0.571	0.207	0.638	2e-15
224135771	355	predicted protein [Populus trichocarpa]	0.603	0.214	0.545	7e-13
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.634	0.231	0.530	9e-13

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 69/94 (73%)

Query: 1  MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHR 60
          MG    AP +GM+MAECAQVGLM   KAAMSDGM+N +FV YSNA ASL+LLP+S   HR
Sbjct: 1  MGLKAAAPFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHR 60

Query: 61 SQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGF 94
          S+ PPLT PIL  FFLLG  GYA   +FD + G+
Sbjct: 61 SERPPLTFPILCGFFLLGLFGYAILIYFDFIFGY 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 63/80 (78%), Gaps = 1/80 (1%)

Query: 3  KVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHR-S 61
          KV + P++GM+MAECAQ G M  GKAAMS+GMS+ VFV YSNA A L+LLP+S LFHR S
Sbjct: 4  KVAVLPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFHRSS 63

Query: 62 QIPPLTLPILSAFFLLGFLG 81
          + PPLTL I+S FFLLG  G
Sbjct: 64 ERPPLTLSIVSGFFLLGLFG 83

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073013|ref|XP_002303950.1| predicted protein [Populus trichocarpa] gi|222841382|gb|EEE78929.1| predicted protein [Populus trichocarpa]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 3  KVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ 62
          KV + P++GM+MAECAQ G M AGKAAMS+GMS+ VFV YSN  AS++LLP+SL+FHR Q
Sbjct: 4  KVAVLPIVGMIMAECAQAGRMIAGKAAMSNGMSSFVFVLYSNTIASIILLPSSLIFHRPQ 63

Query: 63 -IPPLTLPIL 71
            PPLTL I+
Sbjct: 64 ERPPLTLSIV 73

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505090|gb|AFK40611.1| unknown [Medicago truncatula]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 1  MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHR 60
          MGKV + P +GM++AEC QV L+   K  MS GM++ +F+FYSN  A+LVLLP+S   HR
Sbjct: 1  MGKVTV-PFVGMIIAECIQVALIILSKQVMSQGMTSFIFIFYSNTIAALVLLPSSFFIHR 59

Query: 61 SQIPPLTLPILSAFFLLGFLGY 82
           Q PP+T   LS FF+LG LGY
Sbjct: 60 FQRPPITFSTLSGFFILGLLGY 81

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463769|ref|XP_003602166.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355491214|gb|AES72417.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 1  MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHR 60
          MGKV + P +GM++AEC QV L+   K  MS GM++ +F+FYSN  A+LVLLP+S   HR
Sbjct: 1  MGKVTV-PFVGMIIAECIQVALIILSKQVMSQGMTSFIFIFYSNTIAALVLLPSSFFIHR 59

Query: 61 SQIPPLTLPILSAFFLLGFLGY 82
           Q PP+T   LS FF+LG LGY
Sbjct: 60 FQRPPITFSTLSGFFILGLLGY 81

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 62/85 (72%), Gaps = 2/85 (2%)

Query: 3  KVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ 62
          KV L P +GM++AECAQVGLM   K AMS GMS+ +FV YSNA ASL+LLP SLL  R++
Sbjct: 4  KVAL-PFVGMVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHRRTE 62

Query: 63 IPPLTLPILSAFFLLGFLG-YAKFY 86
           PPLT  I+  FFLLG  G  A+F+
Sbjct: 63 RPPLTFSIVCGFFLLGLFGCLAQFF 87

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 52/72 (72%)

Query: 1  MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHR 60
          MG  G A   GM+MAE AQVGLM A KAA+S GM NLVF+ YSN  ASL+LLP+ LLFHR
Sbjct: 1  MGMKGAAAYAGMVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLLFHR 60

Query: 61 SQIPPLTLPILS 72
          S  P LT  +LS
Sbjct: 61 SPRPQLTFSLLS 72

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473421|ref|XP_002266928.2| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 52/72 (72%)

Query: 1  MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHR 60
          MG  G A   GM+MAE AQVGLM A KAA+S GM NLVF+ YSN  ASL+LLP+ LLFHR
Sbjct: 1  MGMKGAAAYAGMVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLLFHR 60

Query: 61 SQIPPLTLPILS 72
          S  P LT  +LS
Sbjct: 61 SPRPQLTFSLLS 72

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135771|ref|XP_002322156.1| predicted protein [Populus trichocarpa] gi|222869152|gb|EEF06283.1| predicted protein [Populus trichocarpa]

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 52/77 (67%), Gaps = 1/77 (1%)

Query: 5  GLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIP 64
           L P   M+M EC  VGL    KAAMS GMS  VFV YSNA A+L+LLP SL+F+R++ P
Sbjct: 9  NLLPFAAMVMVECLDVGLTTLSKAAMSKGMSQFVFVVYSNALATLILLP-SLIFYRTKRP 67

Query: 65 PLTLPILSAFFLLGFLG 81
          P+T  +L  FFLL  +G
Sbjct: 68 PVTYSLLCKFFLLSLVG 84

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 1  MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHR 60
          MG V L P +GM++    QV  M   K AMS+G+S+ V V YSNA ++++LLP SLLFHR
Sbjct: 4  MGTVSL-PFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLSLLFHR 62

Query: 61 SQIPPLTLPILSAFFLLGFLG 81
          S  PPLT  IL  FFLL  +G
Sbjct: 63 SPRPPLTFSILCRFFLLALIG 83

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2020688	375	UMAMIT36 "AT1G70260" [Arabidop	0.634	0.213	0.409	6.4e-11
TAIR|locus:2202745	374	UMAMIT35 "AT1G60050" [Arabidop	0.634	0.213	0.433	1.1e-10
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.611	0.208	0.423	3.5e-09
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.587	0.201	0.44	5.7e-09
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.666	0.233	0.377	1.4e-07
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.555	0.195	0.450	1.8e-07
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.595	0.195	0.333	2.5e-07
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.666	0.237	0.377	2.9e-07
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.626	0.227	0.412	4.7e-07
TAIR|locus:2125167	365	UMAMIT29 "Usually multiple aci	0.674	0.232	0.329	5.2e-07

TAIR|locus:2020688 UMAMIT36 "AT1G70260" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 34/83 (40%), Positives = 47/83 (56%)

Query:     6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPP 65
             L P + M + E   + L    K A++ GMS  VFV Y+NAF S++LLP S LFHR++   
Sbjct:    10 LVPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTE 69

Query:    66 LTL---PILSAFFLLGFLGYAKF 85
              ++   P+L   F LGF G   F
Sbjct:    70 QSIFSWPLLVRVFFLGFTGIFMF 92

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2202745 UMAMIT35 "AT1G60050" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 36/83 (43%), Positives = 45/83 (54%)

Query:     6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQI-- 63
             + P I M + E   + L    K A++ GMS  VF+ Y+NA  SL+LLP S  FHR +   
Sbjct:    11 IVPFIVMALMEACTIALTILAKTALTGGMSPFVFIVYTNALGSLLLLPYSFYFHRDESDD 70

Query:    64 -PPLTLPILSAFFLLGFLGYAKF 85
              P LT P L   FLLGF G   F
Sbjct:    71 EPFLTKPSLVRIFLLGFTGVFLF 93

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 33/78 (42%), Positives = 44/78 (56%)

Query:     6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ-IP 64
             + P   M+  EC  VG     KAA   G+S  VFVFY+   A+LVLLP SL+F RS+ +P
Sbjct:    19 VVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLP 78

Query:    65 PLTLPILSAFFLLGFLGY 82
                 P+    FLL  +G+
Sbjct:    79 SAKTPVFFNIFLLALVGF 96

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 5.7e-09, P = 5.7e-09
 Identities = 33/75 (44%), Positives = 44/75 (58%)

Query:     8 PVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ-IPPL 66
             PV  +++ ECA VGL    KAA   GMS  VF+ YS   A+L+LLP+     RS+ +PP+
Sbjct:    12 PVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRTLPPM 71

Query:    67 TLPILSAFFLLGFLG 81
                IL    LLG +G
Sbjct:    72 NFSILYKIVLLGIIG 86

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 34/90 (37%), Positives = 52/90 (57%)

Query:    12 MMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M++ E + VG+    K A S G++   F+ YS   ASL+LLP+    +RS  +PPL++ I
Sbjct:    21 MLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSSLPPLSVSI 80

Query:    71 LSAFFLLGFLGYAKFYFFDLVAGFFLFDYN 100
             LS   LLGFLG    Y   ++ G+   +Y+
Sbjct:    81 LSKIGLLGFLG--SMY---VITGYIGIEYS 105

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query:    12 MMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M+  E + VGL    K A S G++   F+ YS   ASL+LLP+    +RS+ +PPL+  I
Sbjct:    18 MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLFFTNRSRSLPPLSASI 77

Query:    71 LSAFFLLGFLG 81
             LS   LLGFLG
Sbjct:    78 LSKIGLLGFLG 88

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query:     6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPP 65
             L P + M+  +    G      A ++ G +  V + Y N  A+LVL P +L+F R   P 
Sbjct:    11 LRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVRPK 70

Query:    66 LTLPILSAFFLLGFL 80
             +TL +L     LGFL
Sbjct:    71 MTLSVLWKIMALGFL 85

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 34/90 (37%), Positives = 49/90 (54%)

Query:    12 MMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M+  E   VG+    K A S G++   F+ YS   ASL+LLP+     RS+ +PPL+L I
Sbjct:    18 MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLSI 77

Query:    71 LSAFFLLGFLGYAKFYFFDLVAGFFLFDYN 100
             LS   LLG LG    Y   ++ G+   +Y+
Sbjct:    78 LSKIGLLGLLG--SMY---VITGYIGIEYS 102

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 33/80 (41%), Positives = 41/80 (51%)

Query:     3 KVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ 62
             K  + P   M+  EC  VG     KAA   G S  VFVFY+   A+LVLL  SL+F RS+
Sbjct:    12 KRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSR 71

Query:    63 -IPPLTLPILSAFFLLGFLG 81
              +P     +    FLL  LG
Sbjct:    72 SLPTAKSSLFFKIFLLALLG 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2125167 UMAMIT29 "Usually multiple acids move in and out Transporters 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 28/85 (32%), Positives = 48/85 (56%)

Query:     7 APVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPL 66
             APVI M+++  A   +    K A+  G+++++F  Y  A ++L+L+P S ++ R   P L
Sbjct:     8 APVIVMLISSVAMGSVNALVKKALDVGVNHMIFGAYRMAISALILVPFSYIWERKTRPQL 67

Query:    67 TLPILSAFFLLGFLGYAKFYFFDLV 91
             T  +L   F+ G LG +   FF L+
Sbjct:    68 TFMLLCEHFISGLLGASLMQFFFLL 92

GO:0016020 "membrane" evidence=IEA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	2e-07

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 12 MMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ-IPPLTLPI 70
          M+  E + VG+    K A S G++   F+ YS   ASL+LLP+    +RS+ +PPL++ I
Sbjct: 18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI 77

Query: 71 LSAFFLLGFLG 81
          LS   LLGFLG
Sbjct: 78 LSKIGLLGFLG 88

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PLN00411	358	nodulin MtN21 family protein; Provisional	99.82
PRK11272	292	putative DMT superfamily transporter inner membran	99.58
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.57
PRK15430	296	putative chloramphenical resistance permease RarD;	99.51
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.47
PRK11689	295	aromatic amino acid exporter; Provisional	99.47
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.4
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.4
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.37
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.13
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.12
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.0
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.87
COG2510	140	Predicted membrane protein [Function unknown]	98.84
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.83
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.67
PRK11272	292	putative DMT superfamily transporter inner membran	98.59
PRK11689	295	aromatic amino acid exporter; Provisional	98.42
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.35
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.27
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.23
PLN00411	358	nodulin MtN21 family protein; Provisional	98.14
COG2962	293	RarD Predicted permeases [General function predict	97.96
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.96
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.92
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.83
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.8
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.68
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.57
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.4
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.36
PRK15430	296	putative chloramphenical resistance permease RarD;	97.33
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.29
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.63
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.14
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	94.76
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	94.01
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	93.69
KOG2765	416	consensus Predicted membrane protein [Function unk	93.13
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	92.14
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	90.41
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	90.29
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	89.36
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	87.4
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	85.41
PRK13499	345	rhamnose-proton symporter; Provisional	83.98
KOG4510	346	consensus Permease of the drug/metabolite transpor	83.72
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	83.01

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.82  E-value=3.2e-19  Score=141.68  Aligned_cols=113  Identities=30%  Similarity=0.455  Sum_probs=100.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHhh
Q 033132            3 KVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFLG   81 (126)
Q Consensus         3 ~~~~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~-~~~~~~~~~~~l~llg~~G   81 (126)
                      .++.+||+.|+.+++.+++..++.|.+++.|+||+.++++|+.+|+++++|+++.++|++ +|+.+++++..+.++|++|
T Consensus         9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411          9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            356799999999999999999999999999999999999999999999999987765533 3455688899999999998


Q ss_pred             cchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHHHH
Q 033132           82 YAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVI  120 (126)
Q Consensus        82 ~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l~~  120 (126)
                      .     .++.+++.|++||||++++++.+++|++++++.
T Consensus        89 ~-----~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla  122 (358)
T PLN00411         89 S-----MYVITGYIGIEYSNPTLASAISNITPALTFILA  122 (358)
T ss_pred             H-----HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHH
Confidence            4     567789999999999999999999999999954

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.58  E-value=8.2e-14  Score=107.28  Aligned_cols=117  Identities=13%  Similarity=-0.058  Sum_probs=94.6

Q ss_pred             CCCcchHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 033132            1 MGKVGLAP-VIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGF   79 (126)
Q Consensus         1 m~~~~~~~-~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~   79 (126)
                      |+-++..| .+.++.+.++||.++++.|.+++ ++||..++++|+.+|+++++++... +|++  +.+++++.+...+|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~-~~~~--~~~~~~~~~~~~~g~   76 (292)
T PRK11272          1 MRFRQLLPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLL-RGHP--LPTLRQWLNAALIGL   76 (292)
T ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH-hCCC--CCcHHHHHHHHHHHH
Confidence            44455555 35567788999999999999987 4999999999999999999887654 2322  235678888899999


Q ss_pred             hhcchhHHHHHHHHHHHh-hcchHHHHHHHHHhHHHHHHHHH--Hhhhh
Q 033132           80 LGYAKFYFFDLVAGFFLF-DYNKFSCFYSFTCGIYCVTVLVI--IKDVV  125 (126)
Q Consensus        80 ~G~~~~~~~~~~~~~~gl-~~tsa~~a~ii~~~~Pv~~~l~~--~~~~~  125 (126)
                      ++.    ..++.+++.+. +++++++++++.++.|+++.++.  .|||.
T Consensus        77 ~~~----~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~  121 (292)
T PRK11272         77 LLL----AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRT  121 (292)
T ss_pred             HHH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            887    78888999999 99999999999999999998743  56653

>TIGR00688 rarD rarD protein

Probab=99.57  E-value=6.4e-14  Score=105.69  Aligned_cols=112  Identities=13%  Similarity=0.041  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCCCHHH-HHHHHHHHHh
Q 033132            7 APVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRS-----QIPPLTLPI-LSAFFLLGFL   80 (126)
Q Consensus         7 ~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~-----~~~~~~~~~-~~~l~llg~~   80 (126)
                      +.+..++.+.++||.+.+++|. +++ +||.+++++|+.+|++++.++...++|+     +.++.++++ +..+.+.|.+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            4678899999999999999998 455 9999999999999998887765443221     111122333 3445555555


Q ss_pred             hcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           81 GYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        81 G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      +     ..++.+++.|++++++++++++..+.|+++.+   +.+|||.
T Consensus        80 ~-----~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~  122 (256)
T TIGR00688        80 I-----GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERI  122 (256)
T ss_pred             H-----HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4     68999999999999999999999999999998   5568885

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.51  E-value=1.9e-13  Score=105.53  Aligned_cols=115  Identities=4%  Similarity=-0.196  Sum_probs=90.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C-CCCHHHHHHHHHHHHh
Q 033132            4 VGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQI--P-PLTLPILSAFFLLGFL   80 (126)
Q Consensus         4 ~~~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~--~-~~~~~~~~~l~llg~~   80 (126)
                      ++.+.++.++++.++||.+++..|.. + ++||.++.++|+.++.+++.++...+++++.  + ..+++++ .....|.+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   81 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FMLAVSAV   81 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HHHHHHHH
Confidence            45688999999999999999999975 5 4999999999999999888776544321110  0 1133443 23446777


Q ss_pred             hcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           81 GYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        81 G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      +.    ..++.+++.|++++++++++++..+.|+++.+   +++|||.
T Consensus        82 ~~----~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~  125 (296)
T PRK15430         82 LI----GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERF  125 (296)
T ss_pred             HH----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            77    88999999999999999999999999999998   4558874

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.47  E-value=1.4e-12  Score=100.55  Aligned_cols=110  Identities=7%  Similarity=-0.083  Sum_probs=92.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhc
Q 033132            3 KVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGY   82 (126)
Q Consensus         3 ~~~~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~   82 (126)
                      .++.+++..++++.++|+.+.+++|.++++ +||..+.++|+.+|+++++++..  .+++  +.++|++......|++. 
T Consensus         8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~--~~~~~~~~~~~~~g~~~-   81 (293)
T PRK10532          8 LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL--RFAKEQRLPLLFYGVSL-   81 (293)
T ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc--cCCHHHHHHHHHHHHHH-
Confidence            356789999999999999999999999987 99999999999999999887632  2221  24567888888888865 


Q ss_pred             chhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHHHHHh
Q 033132           83 AKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIK  122 (126)
Q Consensus        83 ~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l~~~~  122 (126)
                          ...+.+++.|+++++++.++++..+.|+++.++.-+
T Consensus        82 ----~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~~  117 (293)
T PRK10532         82 ----GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSR  117 (293)
T ss_pred             ----HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence                466788999999999999999999999999987643

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.47  E-value=7.9e-13  Score=102.02  Aligned_cols=109  Identities=9%  Similarity=-0.040  Sum_probs=84.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcch
Q 033132            5 GLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAK   84 (126)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~   84 (126)
                      |.++++.++.+.++||.+++..|.++++ +||..+.++|+.+|++++.++.   .+++.+   ++ .++..+.|.++.  
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~~~~---~~-~~~~~~~~~l~~--   71 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFPRLR---QF-PKRYLLAGGLLF--   71 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---cccccc---cc-cHHHHHHHhHHH--
Confidence            4567888999999999999999999886 9999999999999999988752   121111   11 223445566666  


Q ss_pred             hHHHHHHHHHHHhhc----chHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           85 FYFFDLVAGFFLFDY----NKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        85 ~~~~~~~~~~~gl~~----tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                        ..++.+++.|++|    +++++++++.++.|+++.+   +..|||.
T Consensus        72 --~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~  117 (295)
T PRK11689         72 --VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKA  117 (295)
T ss_pred             --HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCc
Confidence              7888888888864    5788899999999999988   4568874

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.40  E-value=1.8e-12  Score=86.34  Aligned_cols=102  Identities=17%  Similarity=0.203  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 033132           17 CAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFL   96 (126)
Q Consensus        17 ~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~~~~~~~~g   96 (126)
                      ++||.+.+..|...++ +||....++|+..+.+ +.++....++++.++.+.+++......|.++.    ...+.+++.|
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~a   74 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGT----ALAYLLYFYA   74 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccce----ehHHHHHHHH
Confidence            4799999999999887 9999999999999998 66666666655445567788899999999987    7899999999


Q ss_pred             hhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           97 FDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        97 l~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                      +++++++.++.+.++.|+++.+   +..+|+
T Consensus        75 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~  105 (126)
T PF00892_consen   75 LKYISASIVSILQYLSPVFAAILGWLFLGER  105 (126)
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999998   445554

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.40  E-value=2.8e-12  Score=96.20  Aligned_cols=96  Identities=20%  Similarity=0.016  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Q 033132           19 QVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFD   98 (126)
Q Consensus        19 wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~~~~~~~~gl~   98 (126)
                      ||.+++..|.+++++.||....+.|+..+.+++.++...  |     .+++++......|.++.    .+++.+++.|++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~----~l~~~~~~~a~~   69 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQI----GVFYVLYFVAVK   69 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            899999999999888999999999999998888875432  2     23567788889999998    899999999999


Q ss_pred             cchHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           99 YNKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        99 ~tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      |+++++++++.++.|+++.+   +..|||+
T Consensus        70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~   99 (260)
T TIGR00950        70 RLPVGEAALLLYLAPLYVTLLSDLMGKERP   99 (260)
T ss_pred             hcChhhhHHHHhhhHHHHHHHHHHHccCCC
Confidence            99999999999999999998   4677875

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.37  E-value=1.5e-11  Score=94.97  Aligned_cols=103  Identities=9%  Similarity=0.022  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHH
Q 033132            9 VIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFF   88 (126)
Q Consensus         9 ~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~   88 (126)
                      .+..+.+.++||.+++++|.++++ +||..++++|+.++++.+.++.   .+++   .++   ......|+++.    ..
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~---~~~~---~~~---~~~~~~g~~~~----~~   71 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV---ARPK---VPL---NLLLGYGLTIS----FG   71 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh---cCCC---Cch---HHHHHHHHHHH----HH
Confidence            466788899999999999999876 9999999999999887766542   1211   122   23445566655    56


Q ss_pred             HHHHHHHHhhcc-hHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           89 DLVAGFFLFDYN-KFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        89 ~~~~~~~gl~~t-sa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      ++.+++.+++|+ ++++++++.++.|+++.+   +..|||.
T Consensus        72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~  112 (299)
T PRK11453         72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERL  112 (299)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcC
Confidence            677888999985 788999999999999988   4467774

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.13  E-value=3.2e-09  Score=79.56  Aligned_cols=114  Identities=15%  Similarity=0.078  Sum_probs=93.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhc
Q 033132            5 GLAPVIGMMMAECAQVGLMFAGKAAMSDGMSN--LVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGY   82 (126)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p--~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~   82 (126)
                      ..+.+...+.++++|+.+.+..|...++ .||  ..+..+|+.++.+++.+..+..+++  +..+.+++..++.+|.++.
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  202 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGT  202 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHH
Confidence            4567888999999999999999998764 664  4566678999999998887654332  2346678888888999987


Q ss_pred             chhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           83 AKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        83 ~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                          .+.+.+++.++++.+++.++.+.++.|+++++   +..+|+.
T Consensus       203 ----~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~  244 (260)
T TIGR00950       203 ----ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETL  244 (260)
T ss_pred             ----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                78899999999999999999999999999998   4556653

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.12  E-value=3e-09  Score=82.05  Aligned_cols=98  Identities=10%  Similarity=-0.026  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcch
Q 033132           22 LMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNK  101 (126)
Q Consensus        22 ~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~~~~~~~~gl~~ts  101 (126)
                      ..+.-|.++++.-+|..+++.|+..+.+.+.+. +....+++++.+++|+.+++.+|+++     +.++.+.+.|++|+|
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~l~~~s   90 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-----TIGHVTSNVSLSKVA   90 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence            345789999876789999999999998776654 22222334456789999999999997     477899999999999


Q ss_pred             HHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132          102 FSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus       102 a~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      +++++++.+++|+++.+   +..|||.
T Consensus        91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~  117 (302)
T TIGR00817        91 VSFTHTIKAMEPFFSVVLSAFFLGQEF  117 (302)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhCCCC
Confidence            99999999999999988   5557764

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.00  E-value=1.8e-08  Score=79.90  Aligned_cols=97  Identities=14%  Similarity=0.116  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Q 033132           22 LMFAGKAAMSDGMS-NLVFVFYSNAFASLVLLPASLLFHRSQIPPL--TLPILSAFFLLGFLGYAKFYFFDLVAGFFLFD   98 (126)
Q Consensus        22 ~~v~~k~~l~~g~~-p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~--~~~~~~~l~llg~~G~~~~~~~~~~~~~~gl~   98 (126)
                      ..+..|.++++ +| |.+++.+|+++++++...+ +....++.|+.  .++++..++.+|+++.    .. +...+.|++
T Consensus        64 ~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~llp~gl~~~----~~-~~~~~~sl~  136 (350)
T PTZ00343         64 YVVDNKLALNM-LPLPWTISSLQLFVGWLFALLY-WATGFRKIPRIKSLKLFLKNFLPQGLCHL----FV-HFGAVISMG  136 (350)
T ss_pred             HHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCCHHHHHHHHHHHHHHHH----HH-HHHHHHHHh
Confidence            34578999987 99 9999999999998765544 22222223334  2457889999999997    55 444679999


Q ss_pred             cchHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           99 YNKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        99 ~tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      +++++++.++.++.|+++++   +..|||.
T Consensus       137 ~~svs~~~iika~~Pvft~lls~~~l~ek~  166 (350)
T PTZ00343        137 LGAVSFTHVVKAAEPVFTALLSILFLKQFL  166 (350)
T ss_pred             hccHHHHHHHHHhhHHHHHHHHHHHhCCCc
Confidence            99999999999999999998   4567763

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.87  E-value=1.1e-07  Score=71.24  Aligned_cols=118  Identities=19%  Similarity=0.168  Sum_probs=87.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhh
Q 033132            2 GKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG   81 (126)
Q Consensus         2 ~~~~~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G   81 (126)
                      +++........+...+.|+.+....|...+...++....+.|+..+..++.+.... ++.+.++ ..+++....+.+.++
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~   79 (292)
T COG0697           2 KRALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALLG   79 (292)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHHH
Confidence            34455667777888899999999999987654677777777999998884443221 1111222 223355677777888


Q ss_pred             cchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHHHH---H-hhhh
Q 033132           82 YAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVI---I-KDVV  125 (126)
Q Consensus        82 ~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l~~---~-~~~~  125 (126)
                      .    ..++.+++.+++++++++++.+.++.|+++.++.   + +||.
T Consensus        80 ~----~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~  123 (292)
T COG0697          80 L----ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERL  123 (292)
T ss_pred             H----HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            7    8999999999999999999999999999999965   2 7764

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.84  E-value=2.3e-08  Score=69.09  Aligned_cols=109  Identities=13%  Similarity=0.030  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhhcchhHHH
Q 033132           10 IGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIP-PLTLPILSAFFLLGFLGYAKFYFF   88 (126)
Q Consensus        10 l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~-~~~~~~~~~l~llg~~G~~~~~~~   88 (126)
                      ...++++++||...+++|..+++ +||..-++.|-.....++..+.+...+.+.+ ..+.|.|..+.+-|+-|.     .
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~g-----l   79 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGG-----L   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHH-----H
Confidence            45567889999999999999875 9999999999999999988887765544433 357888888888887774     7


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           89 DLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        89 ~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                      .-.+||.+++...|+...-+-.+.|+++++   ++++|+
T Consensus        80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~  118 (140)
T COG2510          80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGER  118 (140)
T ss_pred             HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCC
Confidence            789999999999999999999999999988   566775

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.83  E-value=8.3e-08  Score=73.49  Aligned_cols=109  Identities=8%  Similarity=0.168  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHhhcchhHH
Q 033132            9 VIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFH-RSQIPPLTLPILSAFFLLGFLGYAKFYF   87 (126)
Q Consensus         9 ~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~-r~~~~~~~~~~~~~l~llg~~G~~~~~~   87 (126)
                      .+..++++++|+...+.+|...++ -++  ..++++..+++++.|+...+. ++++++.++ +++...+++.++.    .
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~   74 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPA-TFWLLLAISAVAN----M   74 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcch-hhHHHHHHHHHHH----H
Confidence            456788999999999999966554 344  458888888888888765532 233343343 4455556666666    7


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           88 FDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        88 ~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      .++.+++.|++++++++++.+.++.|+++.+   +..+|+.
T Consensus        75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~  115 (281)
T TIGR03340        75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETL  115 (281)
T ss_pred             HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999988   5567764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.67  E-value=1.3e-06  Score=67.43  Aligned_cols=111  Identities=11%  Similarity=0.081  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchh
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKF   85 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~   85 (126)
                      ....+..+.++++|+...+..|...++ .+|...... ..++++++.|+....+.  ....+...+..++.+|+++.   
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t---  219 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAE-HGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILST---  219 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHH---
Confidence            457788999999999999999998654 888877544 45666777776654322  12234555666678899888   


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           86 YFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        86 ~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                       .+.+.+++.++++.+|++++.+..+.|++..+   +.+.|+
T Consensus       220 -~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~  260 (293)
T PRK10532        220 -ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGET  260 (293)
T ss_pred             -HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCC
Confidence             78888999999999999999999999999988   445554

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.59  E-value=2.3e-06  Score=65.94  Aligned_cols=113  Identities=19%  Similarity=0.016  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchh
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKF   85 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~   85 (126)
                      ....+..+.++++|+...+..|..- . -++.....++..+++.++.++....+.......+.++|..+..+|+++.   
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s---  223 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGS---  223 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHH---
Confidence            4577888899999999999999863 3 3456677899999988888876554322111235677888999999988   


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           86 YFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        86 ~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                       .+...+++.++++.++++++.+..+.|++.++   ++.+|+
T Consensus       224 -~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~  264 (292)
T PRK11272        224 -IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGET  264 (292)
T ss_pred             -HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence             78888999999999999999999999999998   455664

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.42  E-value=9.6e-06  Score=62.60  Aligned_cols=109  Identities=9%  Similarity=0.048  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchh
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKF   85 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~   85 (126)
                      ...++..+.++++|+...+..|...+ +.+|.....   ..+.+.+.+.... +.......+.+.+..++..|+ ..   
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~t---  225 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAA-AM---  225 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHH-HH---
Confidence            34678899999999999999999754 488876532   3344444443333 222112345667777777774 44   


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           86 YFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        86 ~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                       .+.+.+++.++++.+|+.++.+.+..|++..+   +.+.|+
T Consensus       226 -~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~  266 (295)
T PRK11689        226 -GFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP  266 (295)
T ss_pred             -HHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence             67899999999999999999999999999888   445554

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.35  E-value=1.2e-06  Score=58.69  Aligned_cols=80  Identities=20%  Similarity=0.221  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH
Q 033132           41 FYSNAFASLVLLPASLLFHRSQ--IPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL  118 (126)
Q Consensus        41 ~~R~~~A~l~L~~~~~~~~r~~--~~~~~~~~~~~l~llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l  118 (126)
                      .+|...+.+++......++|.+  .+..++|++......|.+|.    ..+..+++.|++++++ ..+.+.+++|+++.+
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~l   76 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGF----GVAYLLFFYALSYAPA-LVAAIFSLSPIFTAL   76 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHH----HHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHH
Confidence            5899999999888776643321  12234456777788888886    7889999999999995 888999999999998


Q ss_pred             ---HHHhhhh
Q 033132          119 ---VIIKDVV  125 (126)
Q Consensus       119 ---~~~~~~~  125 (126)
                         ++.|||.
T Consensus        77 l~~~~~~er~   86 (113)
T PF13536_consen   77 LSWLFFKERL   86 (113)
T ss_pred             HHHHHhcCCC
Confidence               7778874

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.27  E-value=6.9e-06  Score=63.34  Aligned_cols=115  Identities=13%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---------CCHHHHHH-H
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMSD-GMSNLVFVFYSNAFASLVLLPASLLFHRSQIPP---------LTLPILSA-F   74 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~~-g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~---------~~~~~~~~-l   74 (126)
                      ....+..++++++|+...+..|...++ +.||..+..+....+++.+.|+....+......         ........ .
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            457788899999999999999998761 499999999999999999999877654211100         00011111 2


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           75 FLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        75 ~llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                      +..+....    ...+..++.++++++|+.+++..+..|+++++   +++.|+
T Consensus       224 ~~~~~~~~----~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~  272 (302)
T TIGR00817       224 LVAAMGFF----HFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK  272 (302)
T ss_pred             HHHHHHHH----HHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC
Confidence            22222222    44557788999999999999999999999965   555555

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.23  E-value=8.1e-05  Score=57.50  Aligned_cols=115  Identities=12%  Similarity=0.114  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHH
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMSDG--MSNLVFVFYSNAFASLVLLPASLLFHRSQ-----IPPLTLPILSAFFLLG   78 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~~g--~~p~~l~~~R~~~A~l~L~~~~~~~~r~~-----~~~~~~~~~~~l~llg   78 (126)
                      ....+..+.++++|+...+..|...++.  .+......+-..++.+.+...++..++..     ....+.+++..++.+|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            3577888999999999999999875432  22234444555555444444433333221     1234667899999999


Q ss_pred             HhhcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           79 FLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        79 ~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                      +++.    .+.+.+++.++++.+|++++.+..+.|++..+   +++.|+
T Consensus       222 i~~t----~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~  266 (299)
T PRK11453        222 FVAT----IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDER  266 (299)
T ss_pred             HHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9998    88899999999999999999999999999887   445554

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.14  E-value=0.00012  Score=58.51  Aligned_cols=110  Identities=10%  Similarity=0.057  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCHHHHHHHHHHHHhhc
Q 033132            8 PVIGMMMAECAQVGLMFAGKAAMSDGMSN-LVFVFYSNAFASLVLLPASLLFHRSQIP----PLTLPILSAFFLLGFLGY   82 (126)
Q Consensus         8 ~~l~ll~~~~~wg~~~v~~k~~l~~g~~p-~~l~~~R~~~A~l~L~~~~~~~~r~~~~----~~~~~~~~~l~llg~~G~   82 (126)
                      ..+.++.++++|+...+..|...+. .|| ...+++....+++.+.+.+...++...+    ..+.. ...++..|+. .
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t  266 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-T  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-H
Confidence            4567888899999999999988775 645 4677788887777776666655442211    11222 2224444443 3


Q ss_pred             chhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           83 AKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        83 ~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                          .+.+.+++.++++.+|+.++++.++.|+++++   +.+.|+
T Consensus       267 ----~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~  307 (358)
T PLN00411        267 ----SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS  307 (358)
T ss_pred             ----HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC
Confidence                56777899999999999999999999999998   445554

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.96  E-value=0.00011  Score=56.98  Aligned_cols=118  Identities=12%  Similarity=-0.060  Sum_probs=87.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C--CCCHHHHHHHHHH
Q 033132            1 MGKVGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQI-P--PLTLPILSAFFLL   77 (126)
Q Consensus         1 m~~~~~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~-~--~~~~~~~~~l~ll   77 (126)
                      |+++..+.++.-+.+.++||..+...|.. ++ +|+.+....|...+..++..+....++.+. .  ..++|.+..+.+.
T Consensus         1 ~~~~~~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~   78 (293)
T COG2962           1 MAKDSRKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALT   78 (293)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHH
Confidence            55555688899999999999999999964 55 999999999999998887665544332211 1  1123334444443


Q ss_pred             HHhhcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           78 GFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        78 g~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      +..=     +.+-..|.++.+.....++|+=...+|++.++   +.+|||.
T Consensus        79 a~li-----~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErl  124 (293)
T COG2962          79 ALLI-----GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERL  124 (293)
T ss_pred             HHHH-----HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhc
Confidence            3332     68888899999999999998888888888877   8899974

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.96  E-value=0.0002  Score=55.38  Aligned_cols=105  Identities=15%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHH
Q 033132            9 VIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFF   88 (126)
Q Consensus         9 ~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~   88 (126)
                      ++..++++++||.+.+..|..-  |.++....  |..++.+++....... |+  |+.+   .++....|+++. ..+..
T Consensus         3 ~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~--~~~~---~~~~~~~g~l~G-~~w~i   71 (290)
T TIGR00776         3 ILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VL--PEFW---ALSIFLVGLLSG-AFWAL   71 (290)
T ss_pred             hHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hC--Cccc---ccHHHHHHHHHH-HHHHh
Confidence            5667788999999999999864  68888775  8888888777665543 22  1122   234444455552 11278


Q ss_pred             HHHHHHHHhhcchHHHHHHHHH-hHHHHHHH---HHHhhh
Q 033132           89 DLVAGFFLFDYNKFSCFYSFTC-GIYCVTVL---VIIKDV  124 (126)
Q Consensus        89 ~~~~~~~gl~~tsa~~a~ii~~-~~Pv~~~l---~~~~~~  124 (126)
                      .|.+|+.+.++++.+.+-.+.+ +.|++..+   +..||+
T Consensus        72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~  111 (290)
T TIGR00776        72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEW  111 (290)
T ss_pred             hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhc
Confidence            8999999999999999988888 66665543   556675

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.92  E-value=0.00062  Score=54.06  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------CCCHHHH
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMSD------GMSNLVFVFYSNAFASLVLLPASLLFHRSQIP--------PLTLPIL   71 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~~------g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~--------~~~~~~~   71 (126)
                      ....+..+++.++|+...+..|..+++      ..++.....+-...++++++|+....|..+..        ..+...+
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            457788899999999999999998764      26677777777889999999987655432110        0001011


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           72 SAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        72 ~~l~llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                      ..+....+.. ...|.+++...|.+++.++|..+++..++-|+++++   +..+|+
T Consensus       273 ~~~l~~i~~s-~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~  327 (350)
T PTZ00343        273 GIIIFKIFFS-GVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ  327 (350)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC
Confidence            1111111111 122366677777899999999999999999999988   344554

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.83  E-value=0.0013  Score=45.38  Aligned_cols=105  Identities=15%  Similarity=0.259  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----C-------CHHHH
Q 033132            9 VIGMMMAECAQVGLMFAGKAAMSD------GMSNLVFVFYSNAFASLVLLPASLLFHRSQIPP----L-------TLPIL   71 (126)
Q Consensus         9 ~l~ll~~~~~wg~~~v~~k~~l~~------g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~----~-------~~~~~   71 (126)
                      ++..+.+.++.+...+..|..+++      +.+|..+..+-...+++++.|.....|+.+..+    .       +.+.+
T Consensus         2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T PF03151_consen    2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI   81 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence            456777888999999999998876      899999999999999999999988877654110    0       22334


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH
Q 033132           72 SAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL  118 (126)
Q Consensus        72 ~~l~llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l  118 (126)
                      ..++..|+++     ...+...+.-+++|||...++..+.-.+++.+
T Consensus        82 ~~~~~~~~~~-----~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~  123 (153)
T PF03151_consen   82 FLLILSGLLA-----FLYNLSSFLLIKLTSPLTYSVLGNVKRILVIL  123 (153)
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHH
Confidence            5555556666     48899999999999999999888888777766

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.80  E-value=7.2e-05  Score=57.22  Aligned_cols=114  Identities=11%  Similarity=-0.053  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhh
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLV----FVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG   81 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~----l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G   81 (126)
                      .+.....+.++++|+...+..|...+ +.+|..    ...+.....++.+.+....+++ +....+.+.+......+.++
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG-RSMFPYARQILPSATLGGLM  220 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHHHH
Confidence            34556678888999999999997643 355532    2233333332222222221121 11111222344555666666


Q ss_pred             cchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHHH---HHhhhh
Q 033132           82 YAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLV---IIKDVV  125 (126)
Q Consensus        82 ~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l~---~~~~~~  125 (126)
                      .    .+.+.+++.++++.+++.++....+.|++..++   .++|+.
T Consensus       221 s----~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~  263 (281)
T TIGR03340       221 I----GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERW  263 (281)
T ss_pred             H----HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCc
Confidence            5    678889999999999999999999999999984   567764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.68  E-value=0.0032  Score=46.96  Aligned_cols=104  Identities=12%  Similarity=0.034  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcch
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVF-YSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAK   84 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~-~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~   84 (126)
                      .......+.+.+.|+.+.+..|... + .++..... +.+..+.....+.  ...... .+.+.+++..+...|+++.  
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~~~~--  225 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLF--FLSGFG-APILSRAWLLLLYLGVFST--  225 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHH--Hhcccc-ccCCHHHHHHHHHHHHHHH--
Confidence            3677888999999999999999876 3 77777777 4444222222222  222111 2346678899999999997  


Q ss_pred             hHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH
Q 033132           85 FYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL  118 (126)
Q Consensus        85 ~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l  118 (126)
                        ...+.+++.+++..+++..+.+....|++..+
T Consensus       226 --~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  257 (292)
T COG0697         226 --GLAYLLWYYALRLLGASLVALLSLLEPVFAAL  257 (292)
T ss_pred             --HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence              77899999999999999999999999988887

>TIGR00688 rarD rarD protein

Probab=97.57  E-value=0.0033  Score=47.24  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---HHhhcCC-CC-CCHHHHHHHHHHHHhhcchh
Q 033132           11 GMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASL---LFHRSQI-PP-LTLPILSAFFLLGFLGYAKF   85 (126)
Q Consensus        11 ~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~---~~~r~~~-~~-~~~~~~~~l~llg~~G~~~~   85 (126)
                      ..+.++++|+...+..|...++  ++.....     +...+.|...   ....... +. ...++|..++.+|+.+    
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t----  218 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT--DLAGFCL-----ETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLIT----  218 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC--CcchHHH-----HHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHH----
Confidence            4567889999999999986432  3322222     1222222221   1111111 11 1235788888888874    


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHHHHH
Q 033132           86 YFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVII  121 (126)
Q Consensus        86 ~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l~~~  121 (126)
                       .+.+.+++.|+++.+|+.++.+.++.|++..++..
T Consensus       219 -~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~  253 (256)
T TIGR00688       219 -GTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVS  253 (256)
T ss_pred             -HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence             57899999999999999999999999999988653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.40  E-value=0.0031  Score=48.77  Aligned_cols=106  Identities=10%  Similarity=0.086  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhc
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNA---FASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGY   82 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~---~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~   82 (126)
                      .+.....+++.+.++.+.+..|..  + .||.+..+....   +++.++.+..    ++.+|. +.+.....++.|++ -
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~Gi~-~  221 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH----ILAKPL-KKYAILLNILPGLM-W  221 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH----hcccch-HHHHHHHHHHHHHH-H
Confidence            568888899999999999999975  3 899988555554   3433333321    122232 23334444556766 4


Q ss_pred             chhHHHHHHHHHHHhh-cchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           83 AKFYFFDLVAGFFLFD-YNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        83 ~~~~~~~~~~~~~gl~-~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                          .+.+.+|+.|++ +..++.++++.+..|+...+   +.+||+
T Consensus       222 ----~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~  263 (290)
T TIGR00776       222 ----GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEK  263 (290)
T ss_pred             ----HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccC
Confidence                677888999999 99999999999999998887   556665

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.36  E-value=0.0056  Score=48.70  Aligned_cols=113  Identities=13%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHhh
Q 033132            7 APVIGMMMAE---CAQVGLMFAGKAAMSDGMS-NLVFVFYSNAFASLVLLPASLLFHR-SQIPPLTLPILSAFFLLGFLG   81 (126)
Q Consensus         7 ~~~l~ll~~~---~~wg~~~v~~k~~l~~g~~-p~~l~~~R~~~A~l~L~~~~~~~~r-~~~~~~~~~~~~~l~llg~~G   81 (126)
                      +-+..++++|   ++-.++.+.++..-+.|.+ |..-.++-+..-.++..+....+++ +++.+..+++|++.+++|++-
T Consensus        10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D   89 (334)
T PF06027_consen   10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD   89 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH
Confidence            3444444444   4456666666665566677 6655555555545554444333322 222333456788889999988


Q ss_pred             cchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           82 YAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        82 ~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                      +     ..+++...|.+|||.+.+.++.+..-.++++   +++|||
T Consensus        90 v-----~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~r  130 (334)
T PF06027_consen   90 V-----EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRR  130 (334)
T ss_pred             H-----HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhh
Confidence            6     6688999999999999999888766555554   667776

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.33  E-value=0.007  Score=46.67  Aligned_cols=109  Identities=10%  Similarity=-0.016  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHH
Q 033132           10 IGMMMAECAQVGLMFAGKAAMSDG-MSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFF   88 (126)
Q Consensus        10 l~ll~~~~~wg~~~v~~k~~l~~g-~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~   88 (126)
                      ...+.++++|+.+.+..|...++. .++.....+-..++...+.+.... ............+..+...|..+     .+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~t-----~i  225 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIVT-----TV  225 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHHH-----HH
Confidence            346677899999999999864321 233444444444444433322110 00001111122234445555543     57


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           89 DLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        89 ~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                      .+.+++.++++.+|+.++.+....|++..+   +++.|+
T Consensus       226 ~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~  264 (296)
T PRK15430        226 PLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK  264 (296)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999999999999988   456665

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.29  E-value=0.0042  Score=47.84  Aligned_cols=107  Identities=12%  Similarity=0.010  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHH
Q 033132            8 PVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYF   87 (126)
Q Consensus         8 ~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~   87 (126)
                      |++.++.+...-=...-++|..... ++|-..+.+|..++++++.++..-  ++  ++.+++++..+...|..-.     
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RP--wr--~r~~~~~~~~~~~yGvsLg-----   82 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRP--WR--RRLSKPQRLALLAYGVSLG-----   82 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhH--HH--hccChhhhHHHHHHHHHHH-----
Confidence            5666666654444444566777776 999999999999999999886322  22  3467788888888777653     


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHhHHHHHHHHHHhhh
Q 033132           88 FDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLVIIKDV  124 (126)
Q Consensus        88 ~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l~~~~~~  124 (126)
                      ..|..+|.+++...=+.+..+-.+-|+....+--|+.
T Consensus        83 ~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~sRr~  119 (292)
T COG5006          83 GMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSSRRL  119 (292)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccHHHHHHHhccch
Confidence            5588899999999999998999999999888766553

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.63  E-value=0.035  Score=44.23  Aligned_cols=107  Identities=7%  Similarity=-0.052  Sum_probs=71.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH-HHHHHHHHhhc
Q 033132            4 VGLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPIL-SAFFLLGFLGY   82 (126)
Q Consensus         4 ~~~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~-~~l~llg~~G~   82 (126)
                      ++.+..++.+.+++++|.+.+..|..+++ .|+..+...=-+.+.++..+.....||++....++..- ..+++...++.
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~l  243 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCL  243 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHH
Confidence            56788999999999999999999999886 89988887777777887777777778876654433221 11222222222


Q ss_pred             chhHHHHHHHHHHHhhcchHHHHHHHHHhHHHH
Q 033132           83 AKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCV  115 (126)
Q Consensus        83 ~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~  115 (126)
                          +....+.-..+++++|+...+=..++...
T Consensus       244 ----f~~y~l~p~~l~~ssAt~~nLsLLTsd~~  272 (334)
T PF06027_consen  244 ----FLFYSLVPIVLRMSSATFFNLSLLTSDFY  272 (334)
T ss_pred             ----HHHHHHHHHHHHhCccceeehHHHHhhHH
Confidence                34444556788999988555333333333

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.14  E-value=0.00044  Score=53.65  Aligned_cols=99  Identities=13%  Similarity=0.224  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 033132           17 CAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQI-PPLTLPILSAFFLLGFLGYAKFYFFDLVAGFF   95 (126)
Q Consensus        17 ~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~-~~~~~~~~~~l~llg~~G~~~~~~~~~~~~~~   95 (126)
                      ..+....++.+..++  .+|......|+..-.++-.|........-+ |+ ..|  .++++=|+.|.    +. ....|+
T Consensus        47 ~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~-g~R--~~LiLRg~mG~----tg-vmlmyy  116 (346)
T KOG4510|consen   47 YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPE-GKR--KWLILRGFMGF----TG-VMLMYY  116 (346)
T ss_pred             HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCC-CcE--EEEEeehhhhh----hH-HHHHHH
Confidence            666667777776653  899999999987777777776544221111 22 222  22333445553    22 345568


Q ss_pred             HhhcchHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           96 LFDYNKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        96 gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      +++|-|-+.|++|+..+|++|.+   +++|||-
T Consensus       117 a~~~mslaDA~vItFssPvft~ifaw~~LkE~~  149 (346)
T KOG4510|consen  117 ALMYMSLADAVVITFSSPVFTIIFAWAFLKEPF  149 (346)
T ss_pred             HHhhcchhheEEEEecChHHHHHHHHHHHcCCC
Confidence            99999999999999999999999   6788873

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=94.76  E-value=0.78  Score=35.60  Aligned_cols=110  Identities=12%  Similarity=0.037  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHH
Q 033132            8 PVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYF   87 (126)
Q Consensus         8 ~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~   87 (126)
                      .....+.+..+|+.+-+.+|.+=+. .+.-.=+..-+.+|+++..|+....-..  .-.+...+..-+..|+++.    .
T Consensus       149 Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~--~l~~p~ll~laLgvavlSS----a  221 (292)
T COG5006         149 GVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGP--ALFSPSLLPLALGVAVLSS----A  221 (292)
T ss_pred             HHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcch--hhcChHHHHHHHHHHHHhc----c
Confidence            4455667789999999999987543 5556677888999999999987643221  1234555666677788887    7


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           88 FDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        88 ~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                      +-..+...+++.-++..-+.+.++.|.+-.+   ++++|.
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~  261 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGET  261 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence            7788888999999999999999999999887   555553

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=94.01  E-value=2.1  Score=33.09  Aligned_cols=85  Identities=20%  Similarity=0.179  Sum_probs=60.6

Q ss_pred             HHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcchHH
Q 033132           26 GKAAMSDGMS--NLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFS  103 (126)
Q Consensus        26 ~k~~l~~g~~--p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~~~~~~~~gl~~tsa~  103 (126)
                      -|....++-+  |..+++.++..+.+.-.+.....++++   .+++.+......+++-     .+.+.+.+.+++|.+-.
T Consensus        20 E~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~al~~i~~p   91 (303)
T PF08449_consen   20 EKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK---SRKIPLKKYAILSFLF-----FLASVLSNAALKYISYP   91 (303)
T ss_pred             HHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC---CCcChHHHHHHHHHHH-----HHHHHHHHHHHHhCChH
Confidence            3333334455  889999999998887666544332122   2334456667777666     47788889999999999


Q ss_pred             HHHHHHHhHHHHHHH
Q 033132          104 CFYSFTCGIYCVTVL  118 (126)
Q Consensus       104 ~a~ii~~~~Pv~~~l  118 (126)
                      .-.++-++.|+.+++
T Consensus        92 ~~~~~ks~~~i~vmi  106 (303)
T PF08449_consen   92 TQIVFKSSKPIPVMI  106 (303)
T ss_pred             HHHHHhhhHHHHHHH
Confidence            999999999999987

; GO: 0055085 transmembrane transport

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=93.69  E-value=2.4  Score=32.69  Aligned_cols=107  Identities=16%  Similarity=0.130  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHh---hcCC-C--CCCHHHHHHHHHHHHh
Q 033132            8 PVIGMMMAECAQVGLMFAGKAAMS-DGMSNLVFVFYSNAFASLVLLPASLLFH---RSQI-P--PLTLPILSAFFLLGFL   80 (126)
Q Consensus         8 ~~l~ll~~~~~wg~~~v~~k~~l~-~g~~p~~l~~~R~~~A~l~L~~~~~~~~---r~~~-~--~~~~~~~~~l~llg~~   80 (126)
                      .+.+++++.++-|...+..+...+ .+.+|....++-..++.+...+.....+   -++. +  ..+++.+..+++.++.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            778899999999999999998885 6899999999999999888877665521   1110 0  1123355667777777


Q ss_pred             hcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHHH
Q 033132           81 GYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVLV  119 (126)
Q Consensus        81 G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l~  119 (126)
                      |.     ..|.+.+.-.+.++|...+++.++--.+++++
T Consensus       235 ~~-----~g~~~i~~~~~~~~al~~t~v~t~Rk~~sill  268 (303)
T PF08449_consen  235 GA-----LGQFFIFYLIKKFSALTTTIVTTLRKFLSILL  268 (303)
T ss_pred             HH-----HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Confidence            75     55667777789999999999999888877763

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.13  E-value=0.57  Score=38.09  Aligned_cols=114  Identities=11%  Similarity=-0.002  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHH
Q 033132            6 LAPVIGMMMAECAQVGLMFAGKAAMS-D--GMSNLVFVFYSNAFASLVLLPASLLFHRSQI---PPLTLPILSAFFLLGF   79 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~v~~k~~l~-~--g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~---~~~~~~~~~~l~llg~   79 (126)
                      ....+..+++++.||...+..|.=.+ +  .+|--.+-.+=-++..++++|..+...+-++   +-++..+...+++.|+
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l  325 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL  325 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence            56788889999999999999887555 3  3666666666777788888887665443222   2334456677888999


Q ss_pred             hhcchhHHHHHHHHHHHhhcchHHHHHHHHH-hHHHHHHH-HHHhh
Q 033132           80 LGYAKFYFFDLVAGFFLFDYNKFSCFYSFTC-GIYCVTVL-VIIKD  123 (126)
Q Consensus        80 ~G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~-~~Pv~~~l-~~~~~  123 (126)
                      +|.    ...-+++..|.-.||+..+++=.+ .+|+-++. ..+|+
T Consensus       326 igt----vvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~  367 (416)
T KOG2765|consen  326 IGT----VVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKG  367 (416)
T ss_pred             HHH----HHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcC
Confidence            999    999999999999999988774333 33665554 44444

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=92.14  E-value=2.3  Score=28.30  Aligned_cols=47  Identities=11%  Similarity=0.088  Sum_probs=38.7

Q ss_pred             HHHHHhhcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhhh
Q 033132           75 FLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        75 ~llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~~  125 (126)
                      ..+++.++    .....+...+++..+.+.+..+.++.|+.+.+   +..+|++
T Consensus        40 ~~~~~~~~----~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~l   89 (111)
T PRK15051         40 LGLALACL----GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPV   89 (111)
T ss_pred             HHHHHHHH----HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            33444666    78899999999999999999999999999988   6677764

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=90.41  E-value=1.6  Score=34.63  Aligned_cols=91  Identities=18%  Similarity=0.107  Sum_probs=67.9

Q ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcch
Q 033132           24 FAGKAAMS--DGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNK  101 (126)
Q Consensus        24 v~~k~~l~--~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~~~~~~~~gl~~ts  101 (126)
                      +..|..++  +.--|.+++..+.+.+.+..+..-.+..++..+..++..+..++-+|++-     ++...+-..++++.+
T Consensus        34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-----~~~~v~~n~Sl~~v~  108 (316)
T KOG1441|consen   34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-----CISHVLGNVSLSYVP  108 (316)
T ss_pred             EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-----HHHHHhcchhhhccc
Confidence            36788888  77778899999887777776665433322222222345677778778776     477888899999999


Q ss_pred             HHHHHHHHHhHHHHHHHH
Q 033132          102 FSCFYSFTCGIYCVTVLV  119 (126)
Q Consensus       102 a~~a~ii~~~~Pv~~~l~  119 (126)
                      .+-.-.+=++.|.+++++
T Consensus       109 VsF~q~iKa~~P~~tvl~  126 (316)
T KOG1441|consen  109 VSFYQTIKALMPPFTVLL  126 (316)
T ss_pred             hhHHHHHHhhcchhHHHH
Confidence            999999999999999983

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=90.29  E-value=4.4  Score=27.83  Aligned_cols=95  Identities=17%  Similarity=0.126  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHH
Q 033132            8 PVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYF   87 (126)
Q Consensus         8 ~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~   87 (126)
                      .|+.++++.++-+...+.-|.++++ .++...... . .      ..  .+.-     .+   -...+.+|+.+.    .
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~------~~--~~~~-----~~---p~~~i~lgl~~~----~   59 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I------AA--LLAF-----GL---ALRAVLLGLAGY----A   59 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H------HH--HHHH-----hc---cHHHHHHHHHHH----H
Confidence            5778888888888888999998875 443332211 0 0      00  0000     00   122466777777    8


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHhHHHHHHH-----HHHhhhh
Q 033132           88 FDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL-----VIIKDVV  125 (126)
Q Consensus        88 ~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l-----~~~~~~~  125 (126)
                      +...++..+++..+++.+.-+.+..|+.+.+     +.++|++
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~l  102 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETF  102 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            8899999999999999999999999876644     2567875

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=89.36  E-value=3.6  Score=31.92  Aligned_cols=107  Identities=11%  Similarity=0.033  Sum_probs=64.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCCCHHHHHHHHHHHHhhcc
Q 033132            5 GLAPVIGMMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLP-ASLLFHRSQIPPLTLPILSAFFLLGFLGYA   83 (126)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~v~~k~~l~~g~~p~~l~~~R~~~A~l~L~~-~~~~~~r~~~~~~~~~~~~~l~llg~~G~~   83 (126)
                      ..|....++.+.+.+....++.|..   ++||....+=+ .++-++-.. +....+++   ..+++.+.. .+-|++=  
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~~~~~---~~~k~~~~n-il~G~~w--  205 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLFSKKP---FFEKKSWKN-ILTGLIW--  205 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhccccc---ccccchHHh-hHHHHHH--
Confidence            3567889999999999999999873   37887666544 333222111 11111111   122222222 3333332  


Q ss_pred             hhHHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH---HHHhhh
Q 033132           84 KFYFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL---VIIKDV  124 (126)
Q Consensus        84 ~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l---~~~~~~  124 (126)
                         ...+.+++.+.+.-..+.+-.+.-+..++..+   +++||+
T Consensus       206 ---~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~  246 (269)
T PF06800_consen  206 ---GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEK  246 (269)
T ss_pred             ---HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEec
Confidence               46677888888888777777777777766665   666665

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.40  E-value=13  Score=29.56  Aligned_cols=93  Identities=18%  Similarity=0.151  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 033132           20 VGLMFAGKAAMSDGMSNLVFV--FYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLF   97 (126)
Q Consensus        20 g~~~v~~k~~l~~g~~p~~l~--~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~~~~~~~~gl   97 (126)
                      -...++-|.++...=-|..+.  .++.....+.+...-....- +.|++++++....+-+.++-+     ...+.-..++
T Consensus        25 ~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv-~~~~l~~~~~kk~~P~~~lf~-----~~i~t~~~sl   98 (314)
T KOG1444|consen   25 ILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLV-NFRPLDLRTAKKWFPVSLLFV-----GMLFTGSKSL   98 (314)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcee-ecCCcChHHHHHHccHHHHHH-----HHHHHccccc
Confidence            344567788888533344444  48999888887775433221 235677888888888777764     6677788899


Q ss_pred             hcchHHHHHHHHHhHHHHHHH
Q 033132           98 DYNKFSCFYSFTCGIYCVTVL  118 (126)
Q Consensus        98 ~~tsa~~a~ii~~~~Pv~~~l  118 (126)
                      +|-+-..-+++=+.+|+++++
T Consensus        99 k~lnVpm~tv~kn~tii~~ai  119 (314)
T KOG1444|consen   99 KYLNVPMFTVFKNLTIILTAI  119 (314)
T ss_pred             cccCchHHHHHhhchHHHHHH
Confidence            999999999999999999987

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=85.41  E-value=9.9  Score=26.29  Aligned_cols=78  Identities=22%  Similarity=0.185  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcchHHHHHHHHHhHHH
Q 033132           35 SNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSFTCGIYC  114 (126)
Q Consensus        35 ~p~~l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv  114 (126)
                      ||..-++.-+..+++++..+....++++.+..+.-+| +..+-|++|.     .+-.........-.++++....-.-=+
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG~-----~~V~~~~~~vp~lG~~~~~~l~~~GQl  102 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLGV-----FFVLSNIILVPRLGAALTTILIVAGQL  102 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHHH-----HHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            5999999999999999888777665543333322233 3344688885     566667777788888877655554444


Q ss_pred             HHHH
Q 033132          115 VTVL  118 (126)
Q Consensus       115 ~~~l  118 (126)
                      +..+
T Consensus       103 ~~sl  106 (138)
T PF04657_consen  103 IASL  106 (138)
T ss_pred             HHHH
Confidence            4433

>PRK13499 rhamnose-proton symporter; Provisional

Probab=83.98  E-value=21  Score=28.76  Aligned_cols=47  Identities=15%  Similarity=-0.023  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCCHHHHHHHHHH---HHHHHHH
Q 033132            6 LAPVIGMMMAECAQVGLM-------FAGKAAMSDGMSNLVFVFYSNA---FASLVLL   52 (126)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~-------v~~k~~l~~g~~p~~l~~~R~~---~A~l~L~   52 (126)
                      .|....++++.+..+..+       +..+.+.+.|.||.....-.+.   ++..+.-
T Consensus       173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n  229 (345)
T PRK13499        173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITN  229 (345)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            567778888888888888       6777766678999877777776   5554443

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=83.72  E-value=0.79  Score=35.99  Aligned_cols=98  Identities=8%  Similarity=0.043  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhcchh
Q 033132           10 IGMMMAECAQVGLMFAGKAAMSDGMSNLV----FVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGYAKF   85 (126)
Q Consensus        10 l~ll~~~~~wg~~~v~~k~~l~~g~~p~~----l~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~llg~~G~~~~   85 (126)
                      .+.+.+++.-+..+++.|+. ....+.+.    +...-...+.+.+..+    ..-++| ..+||++.+..+|.+|.   
T Consensus       194 ~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~i----g~~~lP-~cgkdr~l~~~lGvfgf---  264 (346)
T KOG4510|consen  194 VAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASI----GAVQLP-HCGKDRWLFVNLGVFGF---  264 (346)
T ss_pred             HHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhc----cceecC-ccccceEEEEEehhhhh---
Confidence            34444555556667776654 22233332    3333333333333222    223445 46789999999999994   


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHhHHHHHHH
Q 033132           86 YFFDLVAGFFLFDYNKFSCFYSFTCGIYCVTVL  118 (126)
Q Consensus        86 ~~~~~~~~~~gl~~tsa~~a~ii~~~~Pv~~~l  118 (126)
                        +.|.+...|+|.--|.-.+++..+--++.+.
T Consensus       265 --igQIllTm~lQiErAGpvaim~~~dvvfAf~  295 (346)
T KOG4510|consen  265 --IGQILLTMGLQIERAGPVAIMTYTDVVFAFF  295 (346)
T ss_pred             --HHHHHHHHHhhhhccCCeehhhHHHHHHHHH
Confidence              8999999999999999999888887777665

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=83.01  E-value=22  Score=28.28  Aligned_cols=97  Identities=14%  Similarity=0.256  Sum_probs=69.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHH-HHHHHHhhcCC---C--CCCHHHHHHHH
Q 033132            5 GLAPVIGMMMAECAQVGLMFAGKAAM---SDGMSNLVFVFYSNAFASLVLL-PASLLFHRSQI---P--PLTLPILSAFF   75 (126)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~v~~k~~l---~~g~~p~~l~~~R~~~A~l~L~-~~~~~~~r~~~---~--~~~~~~~~~l~   75 (126)
                      ++...+....+.+..+.-.+..|..+   ++.+|++.+..+---.+...++ |+....|..+.   -  ..+.. .....
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence            34566677777788888899999988   4569999999999999999999 88777655442   1  12222 33344


Q ss_pred             HHHHhhcchhHHHHHHHHHHHhhcchHHHHHH
Q 033132           76 LLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYS  107 (126)
Q Consensus        76 llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~i  107 (126)
                      +.+.+.     ...|...|.-+..|||..-++
T Consensus       240 ~~sv~~-----f~~Nls~f~~ig~tSalT~~V  266 (316)
T KOG1441|consen  240 LNSVLA-----FLLNLSAFLVIGRTSALTYSV  266 (316)
T ss_pred             HHHHHH-----HHHHHHHHHHHcccCchhhhh
Confidence            444444     577888899999999986553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	93.93
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	92.06

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=93.93  E-value=0.75  Score=29.56  Aligned_cols=46  Identities=9%  Similarity=-0.032  Sum_probs=37.7

Q ss_pred             HHHHhhcchhHHHHHHHHHHHhhcchHHHHHHH-HHhHHHHHHH---HHHhhhh
Q 033132           76 LLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSF-TCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        76 llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii-~~~~Pv~~~l---~~~~~~~  125 (126)
                      +.+..+.    .....++..++++.+.+.+..+ .+..|+++.+   +.++|+.
T Consensus        34 ~~~~~~~----~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~   83 (110)
T 3b5d_A           34 VGTIICY----CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL   83 (110)
T ss_pred             HHHHHHH----HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence            4566666    7888899999999999999888 7999999987   5667764

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=92.06  E-value=0.18  Score=34.10  Aligned_cols=46  Identities=9%  Similarity=-0.032  Sum_probs=31.7

Q ss_pred             HHHHhhcchhHHHHHHHHHHHhhcchHHHHHHH-HHhHHHHHHH---HHHhhhh
Q 033132           76 LLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSF-TCGIYCVTVL---VIIKDVV  125 (126)
Q Consensus        76 llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii-~~~~Pv~~~l---~~~~~~~  125 (126)
                      ++|+++.    .+.++++..++++.+++.+..+ .++.|+++.+   ++++|+.
T Consensus        34 ~l~i~~~----~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l   83 (137)
T 2i68_A           34 VGTIICY----CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL   83 (137)
T ss_dssp             CHHHHHH----HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHH----HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4566666    7889999999999999999888 8999999988   5667764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00