Citrus Sinensis ID: 033134

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MLEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIVSDDE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHEEEEEEEccccccccccHHHEEEEcccHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MLEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMEssfgelgdvsLVQAKLPKKLKKRrqtqsddglsaGYEEYIdylfpeesqtTNLKILEAAYKWKKQKIVSDDE
Flexible Loop (DISEMBL)
MLEDDFQEHLYEQKKQCIQRARRVFEKAINyyrtsapelkEERAMLLEEWLNMESSFGELGDVSLVQAklpkklkkrrqtqsddglsaGYEEYIDYLFPEESQTTNLKILEAAykwkkqkivsdde
Low Complexity Region (SEG)
MLEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIVSDDE
Disordered region (IsUnstruct)
*************KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV*********************AGYEEYIDYLFPEESQTTNLKILEAAYKWKK********
Disordered Region (DISOPRED)
****DFQEHLYEQ****IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFG*****************************AGYEEYIDYLFPEESQTTNLKILEAAY************
Disordered Region (DISEMBL)
MLEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKL*************DGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKK********
Disordered Region (DISPRO)
*LEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKI*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIVSDDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
P63155	690	Crooked neck-like protein	yes	no	0.833	0.152	0.453	3e-18
P63154	690	Crooked neck-like protein	yes	no	0.833	0.152	0.453	3e-18
Q9BZJ0	848	Crooked neck-like protein	yes	no	0.833	0.123	0.453	5e-18
P17886	702	Protein crooked neck OS=D	yes	no	0.801	0.143	0.413	3e-14
Q5K654	677	Pre-mRNA-splicing factor	N/A	no	0.753	0.140	0.403	3e-13
Q4WT84	676	Pre-mRNA-splicing factor	yes	no	0.738	0.137	0.392	1e-12
Q5BDX1	673	Pre-mRNA-splicing factor	yes	no	0.746	0.139	0.398	4e-12
Q7SGD2	695	Pre-mRNA-splicing factor	N/A	no	0.738	0.133	0.401	8e-12
Q54XP4	705	Crooked neck-like protein	yes	no	0.571	0.102	0.481	5e-11
P87312	674	Pre-mRNA-splicing factor	yes	no	0.880	0.164	0.382	3e-10

>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 3/108 (2%)

Query: 14  KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKK 73
           K+  + + R+++E+A    R    E KEER MLLE W + E  FG + D   V   +P+K
Sbjct: 563 KEGSVAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEK 620

Query: 74  LKKRRQTQSDDGLSAGYEEYIDYLFPEESQT-TNLKILEAAYKWKKQK 120
           +KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+
Sbjct: 621 VKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668

May be involved in pre-mRNA splicing process.
Rattus norvegicus (taxid: 10116)

>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 3/108 (2%)

Query: 14  KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKK 73
           K+  + + R+++E+A    R    E KEER MLLE W + E  FG + D   V   +P+K
Sbjct: 563 KEGSVAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEK 620

Query: 74  LKKRRQTQSDDGLSAGYEEYIDYLFPEESQT-TNLKILEAAYKWKKQK 120
           +KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+
Sbjct: 621 VKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668

Involved in pre-mRNA splicing process.

Mus musculus (taxid: 10090)

>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 68/108 (62%), Gaps = 3/108 (2%)

Query: 14  KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKK 73
           K+  + + R+++E+A    R    E KEER MLLE W + E  FG   D   V   +P+K
Sbjct: 724 KEGSLTKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEK 781

Query: 74  LKKRRQTQSDDGLSAGYEEYIDYLFPEESQT-TNLKILEAAYKWKKQK 120
           +KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+
Sbjct: 782 VKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKKQQ 829

Involved in pre-mRNA splicing process.

Homo sapiens (taxid: 9606)

>sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 18  IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKR 77
           +Q ARR++E+A    R      KE R +LLE W + E    +  ++  V  K+P+++KKR
Sbjct: 569 VQLARRIYERANEMLRQLGD--KESRVLLLEAWRDFERDASDSQEMQKVMDKMPRRIKKR 626

Query: 78  RQTQSDDGLSAGYEEYIDYLFPE-ESQTTNLKILEAAYKWKKQK 120
           ++  SD+G+  G+EE  DY+FPE E    NLK+L AA  WK QK
Sbjct: 627 QKIVSDNGVEEGWEEVFDYIFPEDEMARPNLKLLAAAKMWKTQK 670

May be involved in pre-mRNA splicing process. Involved in neurogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 9/104 (8%)

Query: 19  QRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRR 78
           +RAR VFE+A   ++    E+KEER  LL  W + E + G   D++ ++ ++P K+KKRR
Sbjct: 573 RRARMVFERAHKVFKEK--EMKEERVALLNAWKSFEQTHGSPDDIAKIERQMPSKVKKRR 630

Query: 79  QTQSDDGLSAGYEEYIDYLFP--EESQTTNLKILEAAYKWKKQK 120
           +   D      YEEY+DY+FP  +ES     +IL+ A+KWKK++
Sbjct: 631 KLDDD-----RYEEYLDYMFPADDESSAKLSQILQMAHKWKKEQ 669

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Paracoccidioides brasiliensis (taxid: 121759)

>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 9/102 (8%)

Query: 19  QRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRR 78
           +RAR VFE+A   ++    E+KEER  LL  W   E + G   D+  ++ ++P+++KKRR
Sbjct: 575 RRARAVFERAHKVFKEK--EMKEERVELLNAWRAFEHTHGSPEDIKKIEEQMPRRVKKRR 632

Query: 79  QTQSDDGLSAGYEEYIDYLFPEESQTTN--LKILEAAYKWKK 118
           +   D      YEEY+DY+FP + Q      KIL+AA++WK+
Sbjct: 633 KLDDD-----RYEEYMDYVFPADDQAAASLTKILQAAHRWKQ 669

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 9/103 (8%)

Query: 19  QRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRR 78
           +RAR VFE+A   ++    ELKEER  LL  W   E + G   D+  ++ ++P+++KKRR
Sbjct: 572 RRARAVFERAHRVFKEK--ELKEERVELLNAWRAFEHTHGSPEDIDKIEKQMPRRVKKRR 629

Query: 79  QTQSDDGLSAGYEEYIDYLFPEESQT-TNL-KILEAAYKWKKQ 119
           +   D      YEEY+DY+FP + Q+  NL K+L  A++WK++
Sbjct: 630 KLDDD-----RYEEYMDYVFPADDQSAANLSKLLRMAHQWKQE 667

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=clf-1 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 9/102 (8%)

Query: 20  RARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQ 79
           RAR++FE+A  +      ELK ER  LL  WL  E + G   D+  +Q ++P+K KK+R+
Sbjct: 582 RARKIFERA--HKSMKERELKAERVSLLNAWLAFEKTHGSAEDIEKIQKQMPRKTKKKRK 639

Query: 80  TQSDDGLSAGYEEYIDYLFP-EESQTTNL-KILEAAYKWKKQ 119
            + D      +EEY+DY+FP ++ QT NL  +L  A  WK+Q
Sbjct: 640 LEDD-----TWEEYVDYIFPADDQQTKNLSSLLAMANAWKQQ 676

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 7/79 (8%)

Query: 40  KEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFP 99
           KEER +LLE W   E +FG    ++ V  K+P+++ KRR     DG + G EEY DY+FP
Sbjct: 610 KEERLLLLESWKEFEQTFGNQETLNQVLKKIPQRVIKRR----SDG-NGGIEEYFDYIFP 664

Query: 100 EE--SQTTNLKILEAAYKW 116
           EE  S  T+LK+LEAA +W
Sbjct: 665 EEEKSTQTSLKLLEAAQRW 683

Involved in pre-mRNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf4 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 12/123 (9%)

Query: 2   LEDDFQEHLYEQ--KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGE 59
           LEDD +E   E+      + RAR VFE A+ + R     LKEER +LLE W   E+  G 
Sbjct: 551 LEDDDEEPPNEEVASPTAVVRARNVFENALAHLRQQG--LKEERVVLLEAWKQFEAMHGT 608

Query: 60  LGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTN---LKILEAAYKW 116
                 V + +P+ +KKRR+ +  DG    +EEY+DYLFP+ +        K+LE + KW
Sbjct: 609 EDTRKHVSSLMPQVVKKRRRLE--DG---SFEEYLDYLFPDTATDQGDKMRKMLELSRKW 663

Query: 117 KKQ 119
           K++
Sbjct: 664 KEE 666

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
225426022	703	PREDICTED: crooked neck-like protein 1 [	0.968	0.173	0.822	6e-45
297742306	497	unnamed protein product [Vitis vinifera]	0.984	0.249	0.809	8e-45
449525555	703	PREDICTED: LOW QUALITY PROTEIN: crooked	0.952	0.170	0.801	1e-42
449443386	703	PREDICTED: crooked neck-like protein 1-l	0.952	0.170	0.793	4e-42
356497297	695	PREDICTED: crooked neck-like protein 1-l	0.896	0.162	0.807	9e-39
255537721	696	crooked neck protein, putative [Ricinus	0.896	0.162	0.771	4e-38
356539448	695	PREDICTED: crooked neck-like protein 1-l	0.896	0.162	0.798	4e-38
242038563	722	hypothetical protein SORBIDRAFT_01g01208	0.912	0.159	0.646	5e-36
242090541	720	hypothetical protein SORBIDRAFT_09g02046	0.952	0.166	0.624	7e-36
357481457	693	Pre-mRNA-splicing factor CLF1 [Medicago	0.888	0.161	0.734	6e-35

>gi|225426022|ref|XP_002273571.1| PREDICTED: crooked neck-like protein 1 [Vitis vinifera] gi|147864786|emb|CAN81550.1| hypothetical protein VITISV_028250 [Vitis vinifera]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 102/124 (82%), Positives = 113/124 (91%), Gaps = 2/124 (1%)

Query: 3   EDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGD 62
           EDD QE + E+K+QCI+RARRVFEKA+NY+RTSAPELKEER MLLEEWLNMESSFGELGD
Sbjct: 582 EDDAQESILEEKRQCIERARRVFEKAVNYFRTSAPELKEERTMLLEEWLNMESSFGELGD 641

Query: 63  VSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIV 122
           VSLVQ KLPKKLKK+RQ  ++DG S GYEEYIDYLFPEE+QTTNLKILEAAY+WKKQK  
Sbjct: 642 VSLVQIKLPKKLKKKRQIVTEDGPS-GYEEYIDYLFPEETQTTNLKILEAAYRWKKQK-T 699

Query: 123 SDDE 126
           SDDE
Sbjct: 700 SDDE 703

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742306|emb|CBI34455.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 102/126 (80%), Positives = 114/126 (90%), Gaps = 2/126 (1%)

Query: 1   MLEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGEL 60
           + EDD QE + E+K+QCI+RARRVFEKA+NY+RTSAPELKEER MLLEEWLNMESSFGEL
Sbjct: 374 LPEDDAQESILEEKRQCIERARRVFEKAVNYFRTSAPELKEERTMLLEEWLNMESSFGEL 433

Query: 61  GDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQK 120
           GDVSLVQ KLPKKLKK+RQ  ++DG S GYEEYIDYLFPEE+QTTNLKILEAAY+WKKQK
Sbjct: 434 GDVSLVQIKLPKKLKKKRQIVTEDGPS-GYEEYIDYLFPEETQTTNLKILEAAYRWKKQK 492

Query: 121 IVSDDE 126
             SDDE
Sbjct: 493 -TSDDE 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525555|ref|XP_004169782.1| PREDICTED: LOW QUALITY PROTEIN: crooked neck-like protein 1-like [Cucumis sativus]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/121 (80%), Positives = 111/121 (91%), Gaps = 1/121 (0%)

Query: 1   MLEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGEL 60
           + E++ QE+L+ +K+QCIQ ARRVFEKAI YYR SAPELKEERAMLLEEWLNME+SFGEL
Sbjct: 581 LPEENMQEYLHARKQQCIQHARRVFEKAITYYRNSAPELKEERAMLLEEWLNMETSFGEL 640

Query: 61  GDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQK 120
           GDVSLVQ+KLPKKLKKRRQ  S+DG  AG+EEYIDYLFPEE+QTTNLKILEAAY+WKKQK
Sbjct: 641 GDVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPEETQTTNLKILEAAYRWKKQK 699

Query: 121 I 121
           +
Sbjct: 700 V 700

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443386|ref|XP_004139458.1| PREDICTED: crooked neck-like protein 1-like [Cucumis sativus]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/121 (79%), Positives = 111/121 (91%), Gaps = 1/121 (0%)

Query: 1   MLEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGEL 60
           + E++ QE+L+ +K+QCIQ ARRVFEKAI YYR SAPELKEERA+LLEEWLNME+SFGEL
Sbjct: 581 LPEENMQEYLHARKQQCIQHARRVFEKAITYYRNSAPELKEERAILLEEWLNMETSFGEL 640

Query: 61  GDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQK 120
           GDVSLVQ+KLPKKLKKRRQ  S+DG  AG+EEYIDYLFPEE+QTTNLKILEAAY+WKKQK
Sbjct: 641 GDVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPEETQTTNLKILEAAYRWKKQK 699

Query: 121 I 121
           +
Sbjct: 700 V 700

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497297|ref|XP_003517497.1| PREDICTED: crooked neck-like protein 1-like [Glycine max]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 104/114 (91%), Gaps = 1/114 (0%)

Query: 12  EQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLP 71
           EQKKQCIQ ARRVFEKA+NY+R+SAP+LKEERAMLLE+WLNME++ GELGDVSLVQ+KLP
Sbjct: 583 EQKKQCIQSARRVFEKALNYFRSSAPDLKEERAMLLEKWLNMEATSGELGDVSLVQSKLP 642

Query: 72  KKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIVSDD 125
           KKLKKRR   ++DG S   EE+IDYLFPEESQTTNLKILEAAYKWKKQK+ SDD
Sbjct: 643 KKLKKRRHVATEDG-STRIEEFIDYLFPEESQTTNLKILEAAYKWKKQKLSSDD 695

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537721|ref|XP_002509927.1| crooked neck protein, putative [Ricinus communis] gi|223549826|gb|EEF51314.1| crooked neck protein, putative [Ricinus communis]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 103/114 (90%), Gaps = 1/114 (0%)

Query: 12  EQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLP 71
           +QK++CIQ ARRVFEKA+NY+RTSAPELKEERAMLLEEWLN E++FGELGDVSLVQ KLP
Sbjct: 584 DQKRKCIQNARRVFEKAVNYFRTSAPELKEERAMLLEEWLNTEANFGELGDVSLVQPKLP 643

Query: 72  KKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIVSDD 125
           KKLKKRR   S+DGL+ G EEYIDY+FPEE+Q  NLKILEAAY+WKKQK+ ++D
Sbjct: 644 KKLKKRRPIASEDGLT-GLEEYIDYIFPEETQAPNLKILEAAYRWKKQKVSTED 696

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539448|ref|XP_003538210.1| PREDICTED: crooked neck-like protein 1-like [Glycine max]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 104/114 (91%), Gaps = 1/114 (0%)

Query: 12  EQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLP 71
           EQKKQCIQ ARRVFE+A+NY+R+SAP+LKEERAMLLE+WLNME++ GELGDVSLVQ+KLP
Sbjct: 583 EQKKQCIQCARRVFEQALNYFRSSAPDLKEERAMLLEKWLNMEATSGELGDVSLVQSKLP 642

Query: 72  KKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIVSDD 125
           KKLKKRR   ++DG S   EE+IDYLFPEESQTTNLKILEAAYKWKKQK+ SDD
Sbjct: 643 KKLKKRRHVATEDG-STRIEEFIDYLFPEESQTTNLKILEAAYKWKKQKLSSDD 695

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242038563|ref|XP_002466676.1| hypothetical protein SORBIDRAFT_01g012080 [Sorghum bicolor] gi|241920530|gb|EER93674.1| hypothetical protein SORBIDRAFT_01g012080 [Sorghum bicolor]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 94/116 (81%), Gaps = 1/116 (0%)

Query: 12  EQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLP 71
           EQ+ + +Q+ R +FE+A +Y+RTSAPELKEERAMLLEEWLN E SFG+LGDVSLVQ K P
Sbjct: 607 EQQMERVQKCRAIFERAFDYFRTSAPELKEERAMLLEEWLNKEVSFGDLGDVSLVQKKAP 666

Query: 72  KKLKKRRQTQSDDGLSAGYEEYIDYLFPEE-SQTTNLKILEAAYKWKKQKIVSDDE 126
           +K+K++R   ++DG +  YEEYIDY+FP+E +   NLKILEAAYKWKKQK   DDE
Sbjct: 667 RKVKRKRPIPTEDGSTIAYEEYIDYIFPDEVALAPNLKILEAAYKWKKQKTGDDDE 722

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242090541|ref|XP_002441103.1| hypothetical protein SORBIDRAFT_09g020460 [Sorghum bicolor] gi|241946388|gb|EES19533.1| hypothetical protein SORBIDRAFT_09g020460 [Sorghum bicolor]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 97/125 (77%), Gaps = 5/125 (4%)

Query: 3   EDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGD 62
           E D+QE   E+ ++C    R +FE+A +Y+RTSAPELKEERAMLLEEWLN E SFG+LGD
Sbjct: 600 EVDYQEQQIERVQKC----RAIFERAFDYFRTSAPELKEERAMLLEEWLNKEVSFGDLGD 655

Query: 63  VSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEE-SQTTNLKILEAAYKWKKQKI 121
           VSLVQ K P+K+K++R   ++DG +  YEEYIDY+FP+E +   NLKILEAAYKWKKQK 
Sbjct: 656 VSLVQKKAPRKVKRKRPIPTEDGSTIAYEEYIDYIFPDEVALAPNLKILEAAYKWKKQKT 715

Query: 122 VSDDE 126
             DDE
Sbjct: 716 GDDDE 720

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481457|ref|XP_003611014.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] gi|355512349|gb|AES93972.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula]

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/113 (73%), Positives = 104/113 (92%), Gaps = 1/113 (0%)

Query: 12  EQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLP 71
           EQK+QC+QRAR+VFE A+N++R+SAP+LKEERAMLLE+WLN+E+S GELGDVSLVQ+KLP
Sbjct: 582 EQKEQCLQRARKVFEDALNHFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKLP 641

Query: 72  KKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIVSD 124
           KKLKKRRQ  ++DG S+  EE+IDYLFPEE+ TTNLKI+EAAYKWKKQK+ ++
Sbjct: 642 KKLKKRRQVSTEDG-SSRIEEFIDYLFPEETHTTNLKIMEAAYKWKKQKLSNE 693

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2152965	705	AT5G41770 [Arabidopsis thalian	0.976	0.174	0.677	4.3e-42
TAIR|locus:2089999	657	AT3G13210 [Arabidopsis thalian	0.936	0.179	0.638	6.2e-37
TAIR|locus:2161363	673	AT5G45990 [Arabidopsis thalian	0.904	0.169	0.660	1.2e-35
UNIPROTKB|J9P5Z1	728	CRNKL1 "Uncharacterized protei	0.888	0.153	0.443	5.8e-20
UNIPROTKB|F1MZT2	781	CRNKL1 "Uncharacterized protei	0.888	0.143	0.452	6.6e-20
UNIPROTKB|F1PYE9	797	CRNKL1 "Uncharacterized protei	0.888	0.140	0.443	6.8e-20
MGI|MGI:1914127	690	Crnkl1 "Crn, crooked neck-like	0.888	0.162	0.443	8.6e-20
RGD|620507	690	Crnkl1 "crooked neck pre-mRNA	0.888	0.162	0.443	8.6e-20
UNIPROTKB|Q5JY65	836	CRNKL1 "Crooked neck-like prot	0.928	0.139	0.433	9.5e-20
UNIPROTKB|Q9BZJ0	848	CRNKL1 "Crooked neck-like prot	0.928	0.137	0.433	9.7e-20

TAIR|locus:2152965 AT5G41770 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 4.3e-42, P = 4.3e-42
 Identities = 84/124 (67%), Positives = 103/124 (83%)

Query:     3 EDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGD 62
             ++D +E + E KK CI+RAR +F++A  YY+ S PELKEERA LLE+WLNMESSFG LGD
Sbjct:   582 DEDQEEDVIEHKKDCIKRARAIFDRANTYYKDSTPELKEERATLLEDWLNMESSFGNLGD 641

Query:    63 VSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIV 122
             VS+VQ+KLPKKLKKR+    +DG S  YEEYIDYL+PEESQTTNLKILEAAYKWKKQK+ 
Sbjct:   642 VSIVQSKLPKKLKKRKAITREDG-STEYEEYIDYLYPEESQTTNLKILEAAYKWKKQKVA 700

Query:   123 SDDE 126
             + ++
Sbjct:   701 ASED 704

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA;ISS

TAIR|locus:2089999 AT3G13210 [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 6.2e-37, P = 6.2e-37
 Identities = 76/119 (63%), Positives = 98/119 (82%)

Query:     3 EDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGD 62
             ED+ +E   E+KK  I+RAR +F++A  Y + S PELKEERAMLLE+WLNME+ FG+LGD
Sbjct:   534 EDEEEEDAIERKKDGIKRAREIFDRANTYNKDSTPELKEERAMLLEDWLNMETGFGKLGD 593

Query:    63 VSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKI 121
             V +VQ+KLPKK+KKR+ +  +DG +  YEEY DYLFPEES+TT+LKILEAA+KWKKQK+
Sbjct:   594 VRVVQSKLPKKVKKRKLSSREDGCTE-YEEYTDYLFPEESETTSLKILEAAHKWKKQKV 651

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006396 "RNA processing" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

TAIR|locus:2161363 AT5G45990 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 76/115 (66%), Positives = 91/115 (79%)

Query:     6 FQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSL 65
             F+    E K+  I+ AR +F++A  YY+ + PEL+EERA LLE+WLNME+ FGELGDVS+
Sbjct:   555 FEASASEHKEDGIKSARVIFDRANTYYKDTTPELEEERATLLEDWLNMETGFGELGDVSV 614

Query:    66 VQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQK 120
             VQ+KLPKKLKKR+ T  +DG S  YEEY DYLFPEES TTNLKILEAAYKWKK K
Sbjct:   615 VQSKLPKKLKKRKMTSREDG-STEYEEYFDYLFPEESGTTNLKILEAAYKWKKLK 668

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006396 "RNA processing" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|J9P5Z1 CRNKL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 247 (92.0 bits), Expect = 5.8e-20, P = 5.8e-20
 Identities = 51/115 (44%), Positives = 72/115 (62%)

Query:     7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
             Q  L  +K+  + + R+++E+A    R    E KEER MLLE W + E  FG + D   V
Sbjct:   597 QFELSSRKEGSLAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERV 654

Query:    67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
                +P+K+KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+
Sbjct:   655 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 709

GO:0006396 "RNA processing" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1MZT2 CRNKL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 247 (92.0 bits), Expect = 6.6e-20, P = 6.6e-20
 Identities = 52/115 (45%), Positives = 70/115 (60%)

Query:     7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
             Q  L   K+  + + R+++E+A    R    E KEER MLLE W N E  FG   D   V
Sbjct:   644 QFELSSGKEGSLAKCRQIYEEANKTMRNC--EEKEERLMLLESWRNFEDEFGTASDKERV 701

Query:    67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
                +P+K+KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+
Sbjct:   702 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 756

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IEA

UNIPROTKB|F1PYE9 CRNKL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 247 (92.0 bits), Expect = 6.8e-20, P = 6.8e-20
 Identities = 51/115 (44%), Positives = 72/115 (62%)

Query:     7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
             Q  L  +K+  + + R+++E+A    R    E KEER MLLE W + E  FG + D   V
Sbjct:   666 QFELSSRKEGSLAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERV 723

Query:    67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
                +P+K+KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+
Sbjct:   724 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 778

GO:0006396 "RNA processing" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:1914127 Crnkl1 "Crn, crooked neck-like 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 245 (91.3 bits), Expect = 8.6e-20, P = 8.6e-20
 Identities = 51/115 (44%), Positives = 71/115 (61%)

Query:     7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
             Q  L   K+  + + R+++E+A    R    E KEER MLLE W + E  FG + D   V
Sbjct:   556 QFELSSGKEGSVAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERV 613

Query:    67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
                +P+K+KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+
Sbjct:   614 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668

GO:0000245 "spliceosomal complex assembly" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|620507 Crnkl1 "crooked neck pre-mRNA splicing factor-like 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 245 (91.3 bits), Expect = 8.6e-20, P = 8.6e-20
 Identities = 51/115 (44%), Positives = 71/115 (61%)

Query:     7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
             Q  L   K+  + + R+++E+A    R    E KEER MLLE W + E  FG + D   V
Sbjct:   556 QFELSSGKEGSVAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERV 613

Query:    67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
                +P+K+KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+
Sbjct:   614 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668

GO:0000245 "spliceosomal complex assembly" evidence=ISO;ISS

GO:0003723 "RNA binding" evidence=ISO;ISS

GO:0005681 "spliceosomal complex" evidence=ISO;ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|Q5JY65 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 9.5e-20, P = 9.5e-20
 Identities = 52/120 (43%), Positives = 72/120 (60%)

Query:     7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
             Q  L   K+  + + R+++E+A    R    E KEER MLLE W + E  FG   D   V
Sbjct:   705 QFELSSGKEGSLTKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEEEFGTASDKERV 762

Query:    67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQKIVSDD 125
                +P+K+KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+   +D
Sbjct:   763 DKLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKKQQQEKED 822

GO:0005622 "intracellular" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|Q9BZJ0 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 9.7e-20, P = 9.7e-20
 Identities = 52/120 (43%), Positives = 72/120 (60%)

Query:     7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
             Q  L   K+  + + R+++E+A    R    E KEER MLLE W + E  FG   D   V
Sbjct:   717 QFELSSGKEGSLTKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEEEFGTASDKERV 774

Query:    67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQKIVSDD 125
                +P+K+KKRR+ Q+DDG  AG+EEY DY+FPE++    NLK+L  A  WKKQ+   +D
Sbjct:   775 DKLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKKQQQEKED 834

GO:0005737 "cytoplasm" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
KOG1915	677	consensus Cell cycle control protein (crooked neck	100.0
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.57
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.22
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.38
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.4
KOG1915	677	consensus Cell cycle control protein (crooked neck	87.41
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	86.84
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.87
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	83.7
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	83.22

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.4e-34  Score=249.55  Aligned_cols=110  Identities=58%  Similarity=0.940  Sum_probs=102.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCChhhhhhccccCCCCCCCcee
Q 033134           12 EQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYE   91 (126)
Q Consensus        12 e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~Pr~VKkrR~~~~~dg~~~~~E   91 (126)
                      +++++++.+||+||+||+.++|.+  +.||+|++|||+|++||..||+..+++.|+++||++|||||++..+|| +.+||
T Consensus       566 e~~~~~~~~AR~iferAn~~~k~~--~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr~~~~edG-~~~~E  642 (677)
T KOG1915|consen  566 EITDENIKRARKIFERANTYLKES--TPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRRKIQREDG-DTEYE  642 (677)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhhhhhcccC-chhHH
Confidence            678889999999999999999975  679999999999999999999999999999999999999999988898 68999


Q ss_pred             EeEeeecCCCCC-CcHHHHHHHHHHHHHhhcccc
Q 033134           92 EYIDYLFPEESQ-TTNLKILEAAYKWKKQKIVSD  124 (126)
Q Consensus        92 EY~DYiFPdD~~-~~~~KlL~~AkkWK~~~~~~~  124 (126)
                      ||+|||||+|.. ++++|||++|++||+++..+.
T Consensus       643 Ey~DYiFPed~~~~~~~K~LeaA~kWK~q~~~~~  676 (677)
T KOG1915|consen  643 EYFDYIFPEDASATKNLKILEAAKKWKKQKAKAE  676 (677)
T ss_pred             HHHHhcCccccccCcchHHHHHHHHHHHHHHhcc
Confidence            999999999976 888999999999999887643

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.93  E-value=9e-06  Score=65.72  Aligned_cols=62  Identities=23%  Similarity=0.359  Sum_probs=47.9

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCChh
Q 033134            7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKK   73 (126)
Q Consensus         7 ~~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~Pr~   73 (126)
                      .|++..+.-.++++||.|||||+..+-     .......|...|..||..|||.+++.+|.+|+-..
T Consensus        75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~-----~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   75 EYLDFLIKLNDINNARALFERAISSLP-----KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHCCTSS-----CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            578888888999999999999976431     12224578999999999999999999999885433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.57  E-value=9.8e-05  Score=71.85  Aligned_cols=60  Identities=28%  Similarity=0.436  Sum_probs=53.0

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q 033134            6 FQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKL   70 (126)
Q Consensus         6 ~~~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~   70 (126)
                      ..|++.++.-.++..+|.+|||++.. +...+.||    -++.-|++||+.|||+..++.|+.|.
T Consensus      1638 ~VYid~eik~~~~~~vR~lfeRvi~l-~l~~kkmK----fffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1638 SVYIDMEIKHGDIKYVRDLFERVIEL-KLSIKKMK----FFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhc-CCChhHhH----HHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            47999999999999999999999954 66556777    69999999999999999999998774

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.22  E-value=0.011  Score=58.22  Aligned_cols=61  Identities=20%  Similarity=0.323  Sum_probs=50.8

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q 033134            7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKL   70 (126)
Q Consensus         7 ~~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~   70 (126)
                      .|.+..+.-..++.||+|+|||+....-   -..+|-.-|--|++.+|..||+++++.+|-.|.
T Consensus      1463 ~YMaf~LelsEiekAR~iaerAL~tIN~---REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1463 RYMAFHLELSEIEKARKIAERALKTINF---REEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhhCCc---chhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence            5788888889999999999999876533   235677788888899999999999999998774

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.38  E-value=0.18  Score=46.11  Aligned_cols=56  Identities=18%  Similarity=0.271  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCChhhh
Q 033134           15 KQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLK   75 (126)
Q Consensus        15 ~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~Pr~VK   75 (126)
                      -.+=.+||.+|||++.. ...    -.+-.-|-..|++||..+||-.++-+|.+|+-...+
T Consensus       448 lNdd~N~R~LFEr~l~s-~l~----~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  448 LNDDNNARALFERVLTS-VLS----ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             hCcchhHHHHHHHHHhc-cCC----hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            34447899999999865 222    122335889999999999999999999887654444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.40  E-value=0.39  Score=44.79  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHH
Q 033134           45 MLLEEWLNMESSFGELGDVSLVQ   67 (126)
Q Consensus        45 ~LLeaWk~fE~~~G~~~~~~~V~   67 (126)
                      .+-.+|+.||-.||+++++....
T Consensus       695 ~fW~twk~FEvrHGnedT~keML  717 (835)
T KOG2047|consen  695 EFWDTWKEFEVRHGNEDTYKEML  717 (835)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHH
Confidence            35688999999999998887654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.41  E-value=1.2  Score=40.64  Aligned_cols=56  Identities=25%  Similarity=0.443  Sum_probs=37.4

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHH-----------------HH-----------------HHHHHHHHHH
Q 033134            8 EHLYEQKKQCIQRARRVFEKAINYYRTSAPELKE-----------------ER-----------------AMLLEEWLNM   53 (126)
Q Consensus         8 ~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kE-----------------eR-----------------~~LLeaWk~f   53 (126)
                      |.-.+..-+++..||+||+||++.|..   ++-.                 ||                 -.|...+..|
T Consensus       213 yarFE~k~g~~~~aR~VyerAie~~~~---d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f  289 (677)
T KOG1915|consen  213 YARFEEKHGNVALARSVYERAIEFLGD---DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF  289 (677)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            444556667888999999999877643   1111                 11                 1344566778


Q ss_pred             HHhcCChhhHHHH
Q 033134           54 ESSFGELGDVSLV   66 (126)
Q Consensus        54 E~~~G~~~~~~~V   66 (126)
                      |+.|||-..|+.+
T Consensus       290 EKqfGd~~gIEd~  302 (677)
T KOG1915|consen  290 EKQFGDKEGIEDA  302 (677)
T ss_pred             HHHhcchhhhHHH
Confidence            8889998888775

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=86.84  E-value=1.3  Score=42.13  Aligned_cols=64  Identities=22%  Similarity=0.221  Sum_probs=49.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhH-HHHHhhCChhh
Q 033134            6 FQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDV-SLVQAKLPKKL   74 (126)
Q Consensus         6 ~~~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~-~~V~k~~Pr~V   74 (126)
                      ++|+..+..-.+...||.++.+|+.-     ....+.=+.+|+.|+.||..+||-+++ ..+++++||.-
T Consensus       501 le~~~lE~~~g~~~~~R~~~R~ay~~-----~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~~  565 (881)
T KOG0128|consen  501 LEAINLEREYGDGPSARKVLRKAYSQ-----VVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRVY  565 (881)
T ss_pred             HHHHhHHHHhCCchhHHHHHHHHHhc-----CcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchhh
Confidence            45666766667889999999999643     345666788999999999999997664 55667799755

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.87  E-value=0.65  Score=24.18  Aligned_cols=17  Identities=35%  Similarity=0.778  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHhh
Q 033134           17 CIQRARRVFEKAINYYR   33 (126)
Q Consensus        17 ~~~~AR~Vfera~~~~k   33 (126)
                      +.++||.||++|+..+.
T Consensus         2 ~~~~~r~i~e~~l~~~~   18 (33)
T smart00386        2 DIERARKIYERALEKFP   18 (33)
T ss_pred             cHHHHHHHHHHHHHHCC
Confidence            46789999999998753

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=83.70  E-value=1.1  Score=26.04  Aligned_cols=15  Identities=27%  Similarity=0.483  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 033134           17 CIQRARRVFEKAINY   31 (126)
Q Consensus        17 ~~~~AR~Vfera~~~   31 (126)
                      .+++||+||||.+..
T Consensus         2 E~dRAR~IyeR~v~~   16 (32)
T PF02184_consen    2 EFDRARSIYERFVLV   16 (32)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            468999999999754

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=83.22  E-value=4  Score=32.93  Aligned_cols=46  Identities=15%  Similarity=0.410  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q 033134           16 QCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAK   69 (126)
Q Consensus        16 ~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~   69 (126)
                      .+...|++|||+|++.|..   +     ..++-.+..|+-..|+...+..|-.+
T Consensus        50 ~d~~~A~~Ife~glk~f~~---~-----~~~~~~Y~~~l~~~~d~~~aR~lfer   95 (280)
T PF05843_consen   50 KDPKRARKIFERGLKKFPS---D-----PDFWLEYLDFLIKLNDINNARALFER   95 (280)
T ss_dssp             S-HHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCC---C-----HHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            5567799999999988743   1     24667888999999998777666555

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.87
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.87
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.67
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.66
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	89.93

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.87  E-value=6.9e-06  Score=72.59  Aligned_cols=64  Identities=16%  Similarity=0.194  Sum_probs=53.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCChhhh
Q 033134            7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLK   75 (126)
Q Consensus         7 ~~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~Pr~VK   75 (126)
                      .|+..++...++++||++|+||+..+.     ..+.+..|+.+|..||..||+.+++.+|.+|+....-
T Consensus       509 ~y~~fe~~~~~~~~AR~lferal~~~~-----~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          509 KYLDFLIYVNEESQVKSLFESSIDKIS-----DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP  572 (679)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHTTTSS-----STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            577777778889999999999986532     1457889999999999999999999999999875554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.87  E-value=2.2e-05  Score=66.00  Aligned_cols=43  Identities=14%  Similarity=0.231  Sum_probs=28.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChh
Q 033134            7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELG   61 (126)
Q Consensus         7 ~~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~   61 (126)
                      .|++.++..++.++||.||+|+.        .    .+.|..+|..||..|||.+
T Consensus       359 ~yid~e~~~~~~~~aR~l~er~~--------k----~~~lw~~~~~fE~~~G~~~  401 (493)
T 2uy1_A          359 EFFLFLLRIGDEENARALFKRLE--------K----TSRMWDSMIEYEFMVGSME  401 (493)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSC--------C----BHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--------H----HHHHHHHHHHHHHHCCCHH
Confidence            35666666666777777777772        1    1367777777777777754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.67  E-value=0.0018  Score=52.72  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=46.8

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCCh
Q 033134            8 EHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPK   72 (126)
Q Consensus         8 ~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~Pr   72 (126)
                      |+..+...++.++||.+|+||+....    ...+.+..|+..|..||..+|+.+++..|.+++-.
T Consensus       431 ~~~~~~~~g~~~~Ar~~~~~al~~~~----~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          431 YIDYLSHLNEDNNTRVLFERVLTSGS----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHTTTTCHHHHHHHHHHHHHSCC----SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHhhHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555666788999999999986532    22345667999999999999999999988877533

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.66  E-value=0.00068  Score=56.86  Aligned_cols=46  Identities=9%  Similarity=0.094  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCC
Q 033134           18 IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLP   71 (126)
Q Consensus        18 ~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~P   71 (126)
                      .++||+||++|+..+.    +..+   .++. +..||...|+.+....|-.+.+
T Consensus       336 ~~~ar~ife~al~~~~----~~~~---~~~~-yid~e~~~~~~~~aR~l~er~~  381 (493)
T 2uy1_A          336 RATPYNIFSSGLLKHP----DSTL---LKEE-FFLFLLRIGDEENARALFKRLE  381 (493)
T ss_dssp             SHHHHHHHHHHHHHCT----TCHH---HHHH-HHHHHHHHTCHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHCC----CCHH---HHHH-HHHHHHHcCCHHHHHHHHHHHH
Confidence            5556666666655431    1111   1222 4455555555555555544444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=89.93  E-value=0.33  Score=36.47  Aligned_cols=57  Identities=21%  Similarity=0.338  Sum_probs=39.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q 033134            9 HLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAK   69 (126)
Q Consensus         9 ~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~   69 (126)
                      ......-++.++||.+|++|+..+... +   .....|...|..||..+|+.+....+..+
T Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~l~-p---~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          210 IDYLSHLNEDNNTRVLFERVLTSGSLP-P---EKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHSSSSC-G---GGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhccCCC-H---HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            334444567889999999998642111 1   12346788899999999998877776655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.08

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=8.3e-07  Score=66.57  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=52.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCChhhhh
Q 033134            7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKK   76 (126)
Q Consensus         7 ~~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~Pr~VKk   76 (126)
                      .|+..+...+++++||.||+||+..+..    ..+....|..+|..||..||+.+++.+|.+|++...+.
T Consensus       208 ~y~~~~~~~g~~~~aR~~fe~ai~~~~~----~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         208 AYIDYLSHLNEDNNTRVLFERVLTSGSL----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHSSSS----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            4666777778899999999999875432    23345679999999999999999999999987665543