Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 10 GPFKIDPRRDAV-RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV 68
G I P R V DLT E++D + T Q + ++ +KA S+ AIQDGP+AGQ+V
Sbjct: 35 GHVLIVPLRTTVLNLSDLTMPESQDYFKTLQLIHRFIKWQYKADSINVAIQDGPEAGQSV 94
Query: 69 PHVHIHIVPR 78
PH+H HI+PR
Sbjct: 95 PHLHTHIIPR 104
Cleaves A-5'-PPP-5'A to yield AMP and ADP. Can cleave all dinucleoside polyphosphates, provided the phosphate chain contains at least 3 phosphates and that 1 of the 2 bases composing the nucleotide is a purine. Is most effective on dinucleoside triphosphates. Negatively regulates intracellular dinucleoside polyphosphate levels, which elevate following heat shock.
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 10 GPFKIDPRRDAV-RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV 68
G I P R V DLT E++D + T Q + ++ +KA S+ AIQDGP+AGQ+V
Sbjct: 35 GHVLIVPLRTTVLNLSDLTMPESQDYFKTLQLIHRFIKWQYKADSINVAIQDGPEAGQSV 94
Query: 69 PHVHIHIVPR 78
PH+H HI+PR
Sbjct: 95 PHLHTHIIPR 104
Cleaves A-5'-PPP-5'A to yield AMP and ADP. Can cleave all dinucleoside polyphosphates, provided the phosphate chain contains at least 3 phosphates and that 1 of the 2 bases composing the nucleotide is a purine. Is most effective on dinucleoside triphosphates. Negatively regulates intracellular dinucleoside polyphosphate levels, which elevate following heat shock.
cd01276, PKCI_related, Protein Kinase C Interactin
0.002
>gnl|CDD|238606 cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases
Score = 87.3 bits (217), Expect = 2e-23
Identities = 28/78 (35%), Positives = 33/78 (42%)
Query: 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHI 75
P R R DLT +E DL+ Q L+ +K I DG G VPHVHIHI
Sbjct: 41 PYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVHIHI 100
Query: 76 VPRKAASSEENDGNKDVK 93
VPR + K
Sbjct: 101 VPRWNGDTNFMPVIIYTK 118
Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours. Length = 126
>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Score = 61.6 bits (150), Expect = 3e-13
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
I A G + P+R DL +E +L+L AQ + L+ A I +G
Sbjct: 30 IYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKA 89
Query: 64 AGQTVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQE 115
AGQ V H+HIHI+PR +++ + N +EE+A++
Sbjct: 90 AGQEVFHLHIHIIPRY---KGDDNFPGPGWGTKVEP------NEELEELAEK 132
Length = 138
>gnl|CDD|238263 cd00468, HIT_like, HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides
On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups. Length = 86
>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides
Score = 54.5 bits (132), Expect = 8e-11
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHI 75
P++ DL +E +L L A+ V L+ KA L +G AGQ V HVH+H+
Sbjct: 41 PKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHV 100
Query: 76 VPR 78
+PR
Sbjct: 101 IPR 103
This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression. Length = 103
>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides
Score = 35.2 bits (82), Expect = 0.002
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 16 PRRDAVRFGDLTADETR---DLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVH 72
P++ D T ++ L A V L L I G GQ V H+H
Sbjct: 41 PKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGYRLV--INCGKDGGQEVFHLH 98
Query: 73 IHI 75
+H+
Sbjct: 99 LHL 101
The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members. Length = 104
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []
Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases
Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides
This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.91 E-value=1.4e-24 Score=145.23 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=72.5
Q ss_pred CCCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHH-hhcCCCceEEEEecCCCCCCccCEEEEEEeeccC
Q 033149 2 SSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLE-SYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 2 ~~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~-~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~ 80 (126)
-++.|.++||+||+||+|+.++.||+++++.+++.+++.+.+.+. ..+++++||+++|+|+.+||+|+|+|+|||||+.
T Consensus 30 lD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 30 RDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred EcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 368999999999999999999999999999998888887776654 4468899999999999999999999999999987
Q ss_pred CC
Q 033149 81 AS 82 (126)
Q Consensus 81 ~~ 82 (126)
..
T Consensus 110 ~~ 111 (119)
T PRK10687 110 LG 111 (119)
T ss_pred cC
Confidence 44
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides
On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides
The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1
Probab=99.78 E-value=2e-18 Score=133.72 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=72.0
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCCC--ccCEEEEEEeecc
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAGQ--TVPHVHIHIVPRK 79 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~g~~~gq--~v~H~HiHiiPr~ 79 (126)
+..|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.++.+ +||+++|+++..|+ ..+|+|+||+||+
T Consensus 224 p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 224 PYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred ccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 57899999999999999999999999999999999999999999999776 89999999998775 5578999999996
Q ss_pred C
Q 033149 80 A 80 (126)
Q Consensus 80 ~ 80 (126)
.
T Consensus 304 ~ 304 (347)
T TIGR00209 304 L 304 (347)
T ss_pred c
Confidence 4
This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.24 E-value=2e-11 Score=81.18 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=52.6
Q ss_pred CCCCCCCceeEEEeccc-ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC----CCceEEEEecCCCCCCccCEEEEEEe
Q 033149 2 SSIEQYAFGPFKIDPRR-DAVRFGDLTADETRDLWLTAQTVGTQLESYHK----ASSLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 2 ~~~~P~~~gh~lIiPk~-H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~----~~~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
++.+|.++.|+||+||+ |+.++.+|+.+.+.-|..+.....+.+.+.+. ...++++++..| +++|+|+||+
T Consensus 27 ~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~~~~~gfH~~P----S~~HLHlHvi 102 (116)
T PF11969_consen 27 KDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSDDIRLGFHYPP----SVYHLHLHVI 102 (116)
T ss_dssp E-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGGGEEEEEESS-----SSSS-EEEEE
T ss_pred eCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccccCCC----CcceEEEEEc
Confidence 57889999999999999 99999999988766666665555555555542 457999998665 8999999999
Q ss_pred ecc
Q 033149 77 PRK 79 (126)
Q Consensus 77 Pr~ 79 (126)
...
T Consensus 103 ~~~ 105 (116)
T PF11969_consen 103 SPD 105 (116)
T ss_dssp ETT
T ss_pred cCC
Confidence 853
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism
The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.19 E-value=1e-10 Score=89.91 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=68.0
Q ss_pred CCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCC-CCccCEEEEEEee---ccC
Q 033149 6 QYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQA-GQTVPHVHIHIVP---RKA 80 (126)
Q Consensus 6 P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~g~~~-gq~v~H~HiHiiP---r~~ 80 (126)
...|.+++|+||+|+..+.++++++..+|+.+++.+...+++.+++. .|+++++..+.. .+.-+|+|+|++| |..
T Consensus 218 a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~ 297 (338)
T COG1085 218 ARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSA 297 (338)
T ss_pred ccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcccccccc
Confidence 45688999999999999999999999999999999999999999988 899999988753 3566899999999 654
Q ss_pred CC
Q 033149 81 AS 82 (126)
Q Consensus 81 ~~ 82 (126)
..
T Consensus 298 t~ 299 (338)
T COG1085 298 TK 299 (338)
T ss_pred cc
Confidence 44
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues
Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism
The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA
In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation
The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} Length = 147
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Length = 147
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]
Score = 48.8 bits (115), Expect = 6e-09
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
I Q G + P+ + T + + + + + + L +G +
Sbjct: 30 ISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEK 89
Query: 64 AGQTVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLL 123
AGQ+V H H+HI+PR + DG V + D E++ + L
Sbjct: 90 AGQSVFHYHMHIIPRY----GKGDGFGAVWKTHADDYK-------PEDLQNISSSIAKRL 138
Query: 124 S 124
+
Sbjct: 139 A 139
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]
Score = 42.2 bits (98), Expect = 2e-06
Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 14/123 (11%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
Q G ++ R DL E L L V + +
Sbjct: 29 ENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAV-----EEAVREVMRPDKINLAS 83
Query: 64 AGQTVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLL 123
G PHVH H++PR +D + + + ++ + +
Sbjct: 84 LGNMTPHVHWHVIPRF---------KRDRHFPNSVWGETKRESLPQALDQGSTTALKKAI 134
Query: 124 SKI 126
S
Sbjct: 135 SVR 137
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.5e-25 Score=143.84 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=74.5
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
+++|.++||+||+||+|+.++.+|++++...+..+++.+.+.+++...+++||+++|+|+.+||+|+|+|+|||||.+..
T Consensus 28 D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~n~g~~agq~V~HlH~Hiip~~~l~ 107 (111)
T d1kpfa_ 28 DISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMH 107 (111)
T ss_dssp CSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEECCCHHHHTCCSSSCCEEEEESSCCC
T ss_pred cCCCCCCceEEEeecchhcchhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCccCCcccceeEEEEeCCCcCC
Confidence 68999999999999999999999999998888888888888888888888999999999999999999999999997655
Q ss_pred C
Q 033149 83 S 83 (126)
Q Consensus 83 ~ 83 (126)
+
T Consensus 108 w 108 (111)
T d1kpfa_ 108 W 108 (111)
T ss_dssp S
T ss_pred C
Confidence 3
