Citrus Sinensis ID: 033167

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKADISINA
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEcHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccEEcc
Coil and Loop (DISEMBL)
MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAgtrqhgvnygnFMHGLMKENIQLNRKVLSElsmhepysfkALVDIsrnafpgnknivhpprkadisina
Flexible Loop (DISEMBL)
mnkkeifklakgfrgrakncirIARERVEKAlqysyrdrrnkkrdmrSLWIQrinagtrqhGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFpgnknivhpprkadisina
Low Complexity Region (SEG)
MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKADISINA
Disordered region (IsUnstruct)
*****IFKLAKGFRGRAKNCIRIARERVEKALQYSYRD******DMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAF*******************
Disordered Region (DISOPRED)
*NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP******************
Disordered Region (DISEMBL)
MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKADISINA
Disordered Region (DISPRO)
*NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNK***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKADISINA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
B6IPJ8	119	50S ribosomal protein L20	yes	no	0.84	0.882	0.609	9e-34
Q3YSX0	124	50S ribosomal protein L20	yes	no	0.856	0.862	0.588	2e-32
Q11KK1	133	50S ribosomal protein L20	yes	no	0.88	0.827	0.554	2e-31
Q5HC39	123	50S ribosomal protein L20	yes	no	0.856	0.869	0.551	2e-31
Q5FH69	123	50S ribosomal protein L20	yes	no	0.856	0.869	0.551	2e-31
Q2GHR2	124	50S ribosomal protein L20	yes	no	0.824	0.830	0.592	3e-31
B1ZGB4	121	50S ribosomal protein L20	yes	no	0.832	0.859	0.548	4e-31
B3CRZ0	121	50S ribosomal protein L20	yes	no	0.832	0.859	0.567	5e-31
Q73GR7	121	50S ribosomal protein L20	yes	no	0.776	0.801	0.628	6e-31
C0R3S6	121	50S ribosomal protein L20	yes	no	0.848	0.876	0.584	6e-31

>sp|B6IPJ8|RL20_RHOCS 50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1

 Score =  141 bits (356), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 82/105 (78%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG R HG+
Sbjct: 15  KKVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGL 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPG 108
            Y  FMHGL +  I+++RKVLS+++  EP SFKALV+ ++ A   
Sbjct: 75  TYSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKALAA 119

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

>sp|Q3YSX0|RL20_EHRCJ 50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 85/107 (79%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQHG+
Sbjct: 15  KKVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGL 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNK 110
            Y +F+HGL   NI LNRKVL++++++   +FK +VDI++ A   ++
Sbjct: 75  LYSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEALTKSR 121

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Ehrlichia canis (strain Jake) (taxid: 269484)

>sp|Q11KK1|RL20_MESSB 50S ribosomal protein L20 OS=Mesorhizobium sp. (strain BNC1) GN=rplT PE=3 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 85/110 (77%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR+HG+
Sbjct: 15  KKVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRNFRALWIQRINAATREHGL 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIV 113
            YG F+ GL K  I+++RKVL+++++HEP +F ALV  S+ +    KN  
Sbjct: 75  TYGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKNTT 124

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Mesorhizobium sp. (strain BNC1) (taxid: 266779)

>sp|Q5HC39|RL20_EHRRW 50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplT PE=3 SV=1

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 85/107 (79%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQ+G+
Sbjct: 15  KKVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGL 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNK 110
            Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ A   ++
Sbjct: 75  LYSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEALTKSR 121

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Ehrlichia ruminantium (strain Welgevonden) (taxid: 254945)

>sp|Q5FH69|RL20_EHRRG 50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) GN=rplT PE=3 SV=1

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 85/107 (79%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQ+G+
Sbjct: 15  KKVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGL 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNK 110
            Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ A   ++
Sbjct: 75  LYSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEALTKSR 121

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Ehrlichia ruminantium (strain Gardel) (taxid: 302409)

>sp|Q2GHR2|RL20_EHRCR 50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplT PE=3 SV=1

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 81/103 (78%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQHG+
Sbjct: 15  KKVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGL 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAF 106
            Y +F+HGL   N+ LNRKVL++++++    FK +VD+ + A 
Sbjct: 75  LYSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEAL 117

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Ehrlichia chaffeensis (strain Arkansas) (taxid: 205920)

>sp|B1ZGB4|RL20_METPB 50S ribosomal protein L20 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplT PE=3 SV=1

 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 81/104 (77%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ K AKG+ GR KN IRIA++ VEK LQY+YRDR+NKKR  R+LWIQR+NA  R+HG+
Sbjct: 15  KKVLKAAKGYYGRRKNTIRIAKQAVEKGLQYAYRDRKNKKRTFRALWIQRLNAAVREHGL 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 107
            Y  F++ L K  I+++RK LSEL++HEP +F A+V+ +++A P
Sbjct: 75  TYSRFINALAKSGIEVDRKALSELAIHEPAAFAAVVEKAKSALP 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) (taxid: 441620)

>sp|B3CRZ0|RL20_ORITI 50S ribosomal protein L20 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplT PE=3 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 82/104 (78%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I KLAKG+RGRAKNC RIA ++VEKALQYSYRDRRN+KR  R+LWIQRINA  RQ+ +
Sbjct: 15  KKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDI 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 107
            Y  F++GL + NI ++RKV+++L++H   SF  LV++++ +  
Sbjct: 75  TYSQFINGLKQANITVDRKVMADLAVHNADSFVHLVELTKKSLA 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Orientia tsutsugamushi (strain Ikeda) (taxid: 334380)

>sp|Q73GR7|RL20_WOLPM 50S ribosomal protein L20 OS=Wolbachia pipientis wMel GN=rplT PE=3 SV=1

 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 76/97 (78%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I KLAKG+RGRAK+C RIA +RVEKALQY+YRDRR +KRD RSLWI RINA  R+HG+
Sbjct: 15  KKILKLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRTRKRDFRSLWIIRINAAAREHGL 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 100
            YG FMHGL    I LNRK+L+E++++    F  LV+
Sbjct: 75  TYGRFMHGLTLAGIDLNRKILAEMAVNYKDDFAKLVE 111

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Wolbachia pipientis wMel (taxid: 163164)

>sp|C0R3S6|RL20_WOLWR 50S ribosomal protein L20 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplT PE=3 SV=1

 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 77/106 (72%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I KLAKG+RGRAK+C RIA +RVEKALQY+YRDRR +KRD RSLWI RINA  R+HG+
Sbjct: 15  KKILKLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRTRKRDFRSLWIIRINAAAREHGL 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGN 109
            YG FMHGL    I LNRK+L+E++++    F  LV+        N
Sbjct: 75  TYGRFMHGLTLAGIDLNRKILAEMAVNYKDDFAKLVETVSGKLAEN 120

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Wolbachia sp. subsp. Drosophila simulans (strain wRi) (taxid: 66084)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
224065238	126	predicted protein [Populus trichocarpa]	0.976	0.968	0.967	2e-64
313586591	125	50S ribosomal protein L20 [Hevea brasili	1.0	1.0	0.936	4e-63
255579823	224	50S ribosomal protein L20, putative [Ric	0.992	0.553	0.936	3e-62
449444290	125	PREDICTED: 50S ribosomal protein L20-lik	0.984	0.984	0.902	1e-59
15219330	126	Ribosomal protein L20 [Arabidopsis thali	1.0	0.992	0.888	2e-59
297844610	126	predicted protein [Arabidopsis lyrata su	1.0	0.992	0.888	4e-59
357493523	121	50S ribosomal protein L20 [Medicago trun	0.968	1.0	0.909	7e-59
388521053	121	unknown [Lotus japonicus]	0.968	1.0	0.900	7e-59
351727347	121	uncharacterized protein LOC100527387 [Gl	0.952	0.983	0.924	1e-58
225464801	125	PREDICTED: 50S ribosomal protein L20 [Vi	0.984	0.984	0.869	8e-57

>gi|224065238|ref|XP_002301732.1| predicted protein [Populus trichocarpa] gi|222843458|gb|EEE81005.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/122 (96%), Positives = 121/122 (99%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
           HGVNYGNFMHGLMKENIQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKN+VHPPRK D
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVHPPRKVD 120

Query: 121 IS 122
           +S
Sbjct: 121 MS 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586591|gb|ADR71306.1| 50S ribosomal protein L20 [Hevea brasiliensis]

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 117/125 (93%), Positives = 120/125 (96%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNKKE+ KLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ
Sbjct: 1   MNKKEVLKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
           HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDIS NAFPGNKN+V PPRK +
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISHNAFPGNKNVVLPPRKVN 120

Query: 121 ISINA 125
           ISIN 
Sbjct: 121 ISINV 125

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579823|ref|XP_002530749.1| 50S ribosomal protein L20, putative [Ricinus communis] gi|223529713|gb|EEF31655.1| 50S ribosomal protein L20, putative [Ricinus communis]

 Score =  241 bits (616), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/125 (93%), Positives = 119/125 (95%), Gaps = 1/125 (0%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
           HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN  PGNKN+V PPRK D
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNTNPGNKNLVFPPRKVD 120

Query: 121 ISINA 125
            +IN 
Sbjct: 121 -TINT 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444290|ref|XP_004139908.1| PREDICTED: 50S ribosomal protein L20-like isoform 1 [Cucumis sativus] gi|449444292|ref|XP_004139909.1| PREDICTED: 50S ribosomal protein L20-like isoform 2 [Cucumis sativus] gi|449444294|ref|XP_004139910.1| PREDICTED: 50S ribosomal protein L20-like isoform 3 [Cucumis sativus] gi|449444296|ref|XP_004139911.1| PREDICTED: 50S ribosomal protein L20-like isoform 4 [Cucumis sativus] gi|449475856|ref|XP_004154571.1| PREDICTED: 50S ribosomal protein L20-like isoform 1 [Cucumis sativus] gi|449475859|ref|XP_004154572.1| PREDICTED: 50S ribosomal protein L20-like isoform 2 [Cucumis sativus] gi|449475863|ref|XP_004154573.1| PREDICTED: 50S ribosomal protein L20-like isoform 3 [Cucumis sativus]

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/123 (90%), Positives = 117/123 (95%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR 
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKN+V PP+K  
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISI 123
            S+
Sbjct: 121 ASM 123

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219330|ref|NP_173118.1| Ribosomal protein L20 [Arabidopsis thaliana] gi|21554397|gb|AAM63502.1| ribosomal protein L20, putative [Arabidopsis thaliana] gi|88011169|gb|ABD38912.1| At1g16740 [Arabidopsis thaliana] gi|332191370|gb|AEE29491.1| Ribosomal protein L20 [Arabidopsis thaliana]

 Score =  232 bits (591), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/126 (88%), Positives = 119/126 (94%), Gaps = 1/126 (0%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+RQ
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
           HGVNYGNF+HGLMKENIQLNRKVLSELSMHEPYSFKALVD+SR +FPGNKN+V   RK D
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query: 121 I-SINA 125
           I SINA
Sbjct: 121 ISSINA 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844610|ref|XP_002890186.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336028|gb|EFH66445.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 112/126 (88%), Positives = 119/126 (94%), Gaps = 1/126 (0%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+RQ
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
           HGVNYGNF+HGLMKENIQLNRKVLSELSMHEPYSFKALVD+SR +FPGNKN+V   RK D
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNMVQASRKVD 120

Query: 121 I-SINA 125
           I SINA
Sbjct: 121 ISSINA 126

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493523|ref|XP_003617050.1| 50S ribosomal protein L20 [Medicago truncatula] gi|355518385|gb|AET00009.1| 50S ribosomal protein L20 [Medicago truncatula] gi|388499506|gb|AFK37819.1| unknown [Medicago truncatula]

 Score =  230 bits (587), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 110/121 (90%), Positives = 115/121 (95%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR 
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
           HGVNYGNFMHGL+KENIQLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKN+V PPRK  
Sbjct: 61  HGVNYGNFMHGLLKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVVPPRKVS 120

Query: 121 I 121
            
Sbjct: 121 F 121

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521053|gb|AFK48588.1| unknown [Lotus japonicus]

 Score =  230 bits (587), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 109/121 (90%), Positives = 116/121 (95%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNK +IFKLAKGFRGRAKNCIR+ARERVEKALQYSYRDRRNKKRDMR LWIQRINAGTR 
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRVARERVEKALQYSYRDRRNKKRDMRGLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
           HGVNYGNFMHGL+KENIQLNRKVLSELSMHEPY+FK+LVDISRN+FPGNKN+V PPRKA 
Sbjct: 61  HGVNYGNFMHGLLKENIQLNRKVLSELSMHEPYTFKSLVDISRNSFPGNKNVVIPPRKAA 120

Query: 121 I 121
           I
Sbjct: 121 I 121

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727347|ref|NP_001235366.1| uncharacterized protein LOC100527387 [Glycine max] gi|255632234|gb|ACU16475.1| unknown [Glycine max]

 Score =  229 bits (584), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/119 (92%), Positives = 114/119 (95%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRN KRDMRSLWIQRINAGTR 
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNNKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKA 119
           HGVNYGNFMHGLMKENIQLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKN+V PPRK 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKV 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464801|ref|XP_002268463.1| PREDICTED: 50S ribosomal protein L20 [Vitis vinifera] gi|147832535|emb|CAN74888.1| hypothetical protein VITISV_041868 [Vitis vinifera] gi|296087520|emb|CBI34109.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 107/123 (86%), Positives = 114/123 (92%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWI+RINAG+R 
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIERINAGSRL 60

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
           HGVNY NF+HGLMKENIQLNRKVLSELSMHEPY+FKALVDIS+NAFPGNK  V PPRK  
Sbjct: 61  HGVNYNNFIHGLMKENIQLNRKVLSELSMHEPYTFKALVDISQNAFPGNKKAVLPPRKEG 120

Query: 121 ISI 123
           IS+
Sbjct: 121 ISV 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2015661	126	AT1G16740 [Arabidopsis thalian	1.0	0.992	0.888	7.5e-57
DICTYBASE|DDB_G0273771	122	DDB_G0273771 "50S ribosomal pr	0.832	0.852	0.586	1.4e-30
DICTYBASE|DDB_G0273295	122	DDB_G0273295 "39S ribosomal pr	0.832	0.852	0.586	1.4e-30
TIGR_CMR|ECH_0197	124	ECH_0197 "ribosomal protein L2	0.864	0.870	0.581	2.3e-30
TIGR_CMR|NSE_0215	117	NSE_0215 "ribosomal protein L2	0.816	0.871	0.539	3.6e-25
TIGR_CMR|APH_0060	128	APH_0060 "ribosomal protein L2	0.816	0.796	0.5	1.1e-23
TIGR_CMR|BA_4817	118	BA_4817 "ribosomal protein L20	0.816	0.864	0.441	7.8e-23
TIGR_CMR|CHY_1576	117	CHY_1576 "ribosomal protein L2	0.8	0.854	0.46	1.6e-22
TIGR_CMR|GSU_1518	117	GSU_1518 "ribosomal protein L2	0.832	0.888	0.423	1.1e-21
TIGR_CMR|SO_2302	118	SO_2302 "ribosomal protein L20	0.816	0.864	0.450	3e-21

TAIR|locus:2015661 AT1G16740 [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 112/126 (88%), Positives = 119/126 (94%)

Query:     1 MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
             MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+RQ
Sbjct:     1 MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query:    61 HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPPRKAD 120
             HGVNYGNF+HGLMKENIQLNRKVLSELSMHEPYSFKALVD+SR +FPGNKN+V   RK D
Sbjct:    61 HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query:   121 IS-INA 125
             IS INA
Sbjct:   121 ISSINA 126

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0019843 "rRNA binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISS

DICTYBASE|DDB_G0273771 DDB_G0273771 "50S ribosomal protein L20" [Dictyostelium discoideum (taxid:44689)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 61/104 (58%), Positives = 81/104 (77%)

Query:     1 MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
             MN  ++FKLAKGF GR+KNC  +ARERVEK L+Y+Y  R+ KKRD R +WI+RINAG RQ
Sbjct:     1 MNIDKVFKLAKGFFGRSKNCKSLARERVEKGLEYNYVSRKLKKRDFRKMWIERINAGARQ 60

Query:    61 HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN 104
             H + Y +F  GL+   +++NRK+LSEL++ EP+SFK LVD S+N
Sbjct:    61 HEMTYSDFQRGLIASGVEINRKILSELAVSEPFSFKVLVDHSKN 104

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0273295 DDB_G0273295 "39S ribosomal protein L20, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 61/104 (58%), Positives = 81/104 (77%)

Query:     1 MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
             MN  ++FKLAKGF GR+KNC  +ARERVEK L+Y+Y  R+ KKRD R +WI+RINAG RQ
Sbjct:     1 MNIDKVFKLAKGFFGRSKNCKSLARERVEKGLEYNYVSRKLKKRDFRKMWIERINAGARQ 60

Query:    61 HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN 104
             H + Y +F  GL+   +++NRK+LSEL++ EP+SFK LVD S+N
Sbjct:    61 HEMTYSDFQRGLIASGVEINRKILSELAVSEPFSFKVLVDHSKN 104

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|ECH_0197 ECH_0197 "ribosomal protein L20" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/110 (58%), Positives = 85/110 (77%)

Query:     4 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
             K++ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQHG+
Sbjct:    15 KKVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGL 74

Query:    64 NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIV 113
              Y +F+HGL   N+ LNRKVL++++++    FK +VD+ + A   NK+ V
Sbjct:    75 LYSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEAL--NKSRV 122

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|NSE_0215 NSE_0215 "ribosomal protein L20" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 55/102 (53%), Positives = 74/102 (72%)

Query:     4 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
             K++ K AKGF GR+KNC RIA  R+EK+ QY+YRDR+ +KRD RSLWIQRINA  R  G+
Sbjct:    15 KKVIKQAKGFHGRSKNCYRIALRRLEKSWQYAYRDRKVRKRDFRSLWIQRINAAVRSFGL 74

Query:    64 NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
              Y  FM GL    + +NRKVLSEL++ +P +F  +V+ ++ A
Sbjct:    75 VYSVFMKGLKAAGVDVNRKVLSELAISQPSAFGEIVNKAKAA 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|APH_0060 APH_0060 "ribosomal protein L20" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 51/102 (50%), Positives = 73/102 (71%)

Query:     4 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
             K++  LAKG+RGR+KNC R A +R+EKAL Y+YRDRR +KRD RSLWI RINA    +G+
Sbjct:    15 KKVIALAKGYRGRSKNCYRAALQRLEKALAYAYRDRRARKRDFRSLWIVRINAAAGLYGL 74

Query:    64 NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
              Y  FMHG+   +I LNRK+L+E+++ +  +F+ +   +  A
Sbjct:    75 RYSEFMHGVSLCSIGLNRKMLAEMAVRDKGAFEKIAHAAAQA 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|BA_4817 BA_4817 "ribosomal protein L20" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 45/102 (44%), Positives = 71/102 (69%)

Query:     3 KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
             +K++ KLAKG+ G      ++A ++V K+L Y++RDRR KKRD R LWI RINA  R +G
Sbjct:    14 RKKVIKLAKGYYGSKNTLFKVANQQVMKSLMYAFRDRRQKKRDFRKLWITRINAAARMNG 73

Query:    63 VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN 104
             ++Y   MHGL    I++NRK+L++L++H+  +F  L  +++N
Sbjct:    74 LSYSRLMHGLKNAGIEVNRKMLADLAVHDEKAFAELATVAKN 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_1576 CHY_1576 "ribosomal protein L20" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 46/100 (46%), Positives = 72/100 (72%)

Query:     4 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
             K+I KLAKG+ G      R+A+++V K+L Y+YRDRR +KR+ R LWI RINA  R HG+
Sbjct:    15 KKILKLAKGYFGAKSKLFRVAKQQVMKSLMYAYRDRRARKREFRKLWITRINAAARMHGL 74

Query:    64 NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 103
              Y   M+GL K  +++NRK+L++L++++  +F  LV+I++
Sbjct:    75 TYSRMMNGLKKAGVEINRKMLADLAVNDKNAFAELVEIAK 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|GSU_1518 GSU_1518 "ribosomal protein L20" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 44/104 (42%), Positives = 72/104 (69%)

Query:     3 KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
             + ++ KLAKGFRG      R A E V++AL Y++RDR+ KKRD R+LWI RINA +R +G
Sbjct:    14 RNKVLKLAKGFRGARSKLFRSATEAVDRALNYAFRDRKVKKRDFRALWITRINAASRLNG 73

Query:    63 VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAF 106
             ++Y   +HGL +  ++++RKVL++L++ +P  F  +  +++  F
Sbjct:    74 LSYSKLIHGLKQAQVEIDRKVLADLAVSDPKGFSEIATLAKAQF 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SO_2302 SO_2302 "ribosomal protein L20" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 46/102 (45%), Positives = 71/102 (69%)

Query:     4 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
             K++ KLAKG+ G      R+A + V KA QY+YRDRR KKR  R LWI RINA  RQ+G+
Sbjct:    15 KKVLKLAKGYYGARSRTYRVAVQAVTKAGQYAYRDRRQKKRQFRQLWIARINAAARQNGL 74

Query:    64 NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
             +Y  F++GL K +I+++RK+L+++++ +   F  LV+ ++ A
Sbjct:    75 SYSRFINGLKKASIEIDRKILADIAVFDKVVFATLVEKAKEA 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q68WD0	RL20_RICTY	No assigned EC number	0.57	0.8	0.8547	yes	no
P66102	RL20_BRUSU	No assigned EC number	0.5	0.896	0.8358	yes	no
P66101	RL20_BRUME	No assigned EC number	0.5	0.896	0.8358	yes	no
Q5HC39	RL20_EHRRW	No assigned EC number	0.5514	0.856	0.8699	yes	no
A8GVL2	RL20_RICB8	No assigned EC number	0.5773	0.776	0.8290	yes	no
Q3YSX0	RL20_EHRCJ	No assigned EC number	0.5887	0.856	0.8629	yes	no
A9W371	RL20_METEP	No assigned EC number	0.5384	0.832	0.8595	yes	no
Q2RNH9	RL20_RHORT	No assigned EC number	0.5339	0.824	0.824	yes	no
Q2YQV7	RL20_BRUA2	No assigned EC number	0.5	0.896	0.8358	yes	no
A7HPK9	RL20_PARL1	No assigned EC number	0.5533	0.824	0.8728	yes	no
C0RG04	RL20_BRUMB	No assigned EC number	0.5	0.896	0.8358	yes	no
C3PP50	RL20_RICAE	No assigned EC number	0.5876	0.776	0.8290	yes	no
A5CCZ4	RL20_ORITB	No assigned EC number	0.5673	0.832	0.8595	yes	no
Q0ATG2	RL20_MARMM	No assigned EC number	0.5922	0.824	0.8728	yes	no
A8HWM3	RL20_AZOC5	No assigned EC number	0.5428	0.84	0.8823	yes	no
Q1RI68	RL20_RICBR	No assigned EC number	0.5773	0.776	0.8290	yes	no
A8GSZ8	RL20_RICRS	No assigned EC number	0.5876	0.776	0.8290	yes	no
A8EY61	RL20_RICCK	No assigned EC number	0.5670	0.776	0.8290	yes	no
A6WX18	RL20_OCHA4	No assigned EC number	0.5	0.896	0.8358	yes	no
B3CRZ0	RL20_ORITI	No assigned EC number	0.5673	0.832	0.8595	yes	no
B6IPJ8	RL20_RHOCS	No assigned EC number	0.6095	0.84	0.8823	yes	no
Q2N635	RL20_ERYLH	No assigned EC number	0.5333	0.84	0.8823	yes	no
Q11KK1	RL20_MESSB	No assigned EC number	0.5545	0.88	0.8270	yes	no
B1ZGB4	RL20_METPB	No assigned EC number	0.5480	0.832	0.8595	yes	no
B3CLK2	RL20_WOLPP	No assigned EC number	0.5660	0.848	0.8760	yes	no
A0L4J9	RL20_MAGSM	No assigned EC number	0.5728	0.824	0.8803	yes	no
A8GP89	RL20_RICAH	No assigned EC number	0.5773	0.776	0.8290	yes	no
Q5FH69	RL20_EHRRG	No assigned EC number	0.5514	0.856	0.8699	yes	no
B2S9B6	RL20_BRUA1	No assigned EC number	0.5	0.896	0.8358	yes	no
A8F291	RL20_RICM5	No assigned EC number	0.5876	0.776	0.8290	yes	no
Q73GR7	RL20_WOLPM	No assigned EC number	0.6288	0.776	0.8016	yes	no
A9M9V2	RL20_BRUC2	No assigned EC number	0.5	0.896	0.8358	yes	no
Q9ZCV0	RL20_RICPR	No assigned EC number	0.58	0.8	0.8547	yes	no
B0BUJ0	RL20_RICRO	No assigned EC number	0.5876	0.776	0.8290	yes	no
B0UPJ6	RL20_METS4	No assigned EC number	0.5471	0.848	0.848	yes	no
Q57AE2	RL20_BRUAB	No assigned EC number	0.5	0.896	0.8358	yes	no
B0CJL8	RL20_BRUSI	No assigned EC number	0.5	0.896	0.8358	yes	no
B1M6P4	RL20_METRJ	No assigned EC number	0.5566	0.848	0.848	yes	no
C0R3S6	RL20_WOLWR	No assigned EC number	0.5849	0.848	0.8760	yes	no
Q5GRX9	RL20_WOLTR	No assigned EC number	0.5660	0.848	0.8760	yes	no
A5V924	RL20_SPHWW	No assigned EC number	0.5272	0.88	0.88	yes	no
Q2GHR2	RL20_EHRCR	No assigned EC number	0.5922	0.824	0.8306	yes	no
Q92H37	RL20_RICCN	No assigned EC number	0.5876	0.776	0.8290	yes	no
B8IP77	RL20_METNO	No assigned EC number	0.5377	0.848	0.848	yes	no
Q98CP8	RL20_RHILO	No assigned EC number	0.5869	0.736	0.6917	yes	no
A5VT72	RL20_BRUO2	No assigned EC number	0.5	0.896	0.8358	yes	no
Q4UMK8	RL20_RICFE	No assigned EC number	0.5773	0.776	0.8290	yes	no
C4K1L0	RL20_RICPU	No assigned EC number	0.5773	0.776	0.8290	yes	no
Q2VYY8	RL20_MAGSA	No assigned EC number	0.5728	0.824	0.8728	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
PRK05185	114	PRK05185, rplT, 50S ribosomal protein L20; Provisi	2e-50
pfam00453	108	pfam00453, Ribosomal_L20, Ribosomal protein L20	4e-49
cd07026	106	cd07026, Ribosomal_L20, Ribosomal protein L20	1e-48
PTZ00030	121	PTZ00030, PTZ00030, 60S ribosomal protein L20; Pro	4e-47
COG0292	118	COG0292, RplT, Ribosomal protein L20 [Translation,	2e-46
TIGR01032	113	TIGR01032, rplT_bact, ribosomal protein L20	8e-40
CHL00068	115	CHL00068, rpl20, ribosomal protein L20	1e-31
PRK14537	230	PRK14537, PRK14537, 50S ribosomal protein L20/unkn	5e-26

>gnl|CDD|179959 PRK05185, rplT, 50S ribosomal protein L20; Provisional

 Score =  155 bits (395), Expect = 2e-50
 Identities = 53/102 (51%), Positives = 78/102 (76%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
           +K+I KLAKG+RG      R+A++ V KALQY+YRDRR KKRD R LWI RINA  RQ+G
Sbjct: 13  RKKILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQKKRDFRKLWIARINAAARQNG 72

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN 104
           ++Y  F++GL K  I+++RKVL++L++++P +F ALV+ ++ 
Sbjct: 73  LSYSRFINGLKKAGIEIDRKVLADLAVNDPAAFAALVEKAKA 114

Length = 114

>gnl|CDD|201238 pfam00453, Ribosomal_L20, Ribosomal protein L20

 Score =  151 bits (385), Expect = 4e-49
 Identities = 56/96 (58%), Positives = 76/96 (79%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
           +K+I KLAKGFRG      R A+++V KALQY+YRDR+ KKRD R LWI RINA  R+HG
Sbjct: 13  RKKILKLAKGFRGARSKLFRTAKQQVMKALQYAYRDRKKKKRDFRRLWITRINAAAREHG 72

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKAL 98
           ++Y  F++GL K NI+LNRKVL++L++++P +FKAL
Sbjct: 73  LSYSRFINGLKKANIELNRKVLAQLAINDPEAFKAL 108

Length = 108

>gnl|CDD|197305 cd07026, Ribosomal_L20, Ribosomal protein L20

 Score =  150 bits (382), Expect = 1e-48
 Identities = 58/98 (59%), Positives = 75/98 (76%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
           +K+I KLAKGFRGR     R A++ V KAL Y+YRDR+ KKRD R LWI RINA  R+HG
Sbjct: 9   RKKILKLAKGFRGRRSRLFRTAKQAVMKALAYAYRDRKQKKRDFRRLWITRINAAAREHG 68

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 100
           ++Y  F+HGL K NI LNRKVL++L++ +P +FKALV+
Sbjct: 69  LSYSRFIHGLKKANILLNRKVLAQLAILDPKAFKALVE 106

The ribosomal protein family L20 contains members from eubacteria, as well as their mitochondrial and plastid homologs. L20 is an assembly protein, required for the first in-vitro reconstitution step of the 50S ribosomal subunit, but does not seem to be essential for ribosome activity. L20 has been shown to partially unfold in the absence of RNA, in regions corresponding to the RNA-binding sites. L20 represses the translation of its own mRNA via specific binding to two distinct mRNA sites, in a manner similar to the L20 interaction with 23S ribosomal RNA. . Length = 106

>gnl|CDD|185406 PTZ00030, PTZ00030, 60S ribosomal protein L20; Provisional

 Score =  147 bits (373), Expect = 4e-47
 Identities = 60/106 (56%), Positives = 79/106 (74%)

Query: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQ 60
           + + ++FKLAKGFRGR+KNC ++AR RV KAL YSY  RR +KR +R  WIQ INA TR+
Sbjct: 3   IPRDKVFKLAKGFRGRSKNCFKLARNRVMKALLYSYISRRKRKRILRVHWIQTINAATRE 62

Query: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAF 106
           H + Y  F++GL   NIQLNRK+L+ L++ EP+SFKALVD S+   
Sbjct: 63  HNMTYSRFINGLNNSNIQLNRKILANLAITEPFSFKALVDESKYQL 108

Length = 121

>gnl|CDD|223369 COG0292, RplT, Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]

 Score =  145 bits (369), Expect = 2e-46
 Identities = 52/105 (49%), Positives = 79/105 (75%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
           +K+I KLAKG+RG      R+A++ V KALQY+YRDRR +KRD R LWI RINA  R++G
Sbjct: 14  RKKILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQRKRDFRKLWIARINAAARENG 73

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 107
           ++Y  F++GL K  I+++RKVL++L++++P +F ALV+ ++ A  
Sbjct: 74  LSYSRFINGLKKAGIEIDRKVLADLAINDPAAFAALVEKAKAALA 118

Length = 118

>gnl|CDD|130104 TIGR01032, rplT_bact, ribosomal protein L20

 Score =  128 bits (324), Expect = 8e-40
 Identities = 56/101 (55%), Positives = 79/101 (78%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
           +K+I K AKGFRG  K   R+A++ V KA+ Y+YRDRR +KRD RSLWI RINA  RQHG
Sbjct: 13  RKKILKQAKGFRGTRKRHYRVAKQTVIKAMAYAYRDRRQRKRDFRSLWITRINAAARQHG 72

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 103
           ++Y  F++GL K NI++NRKVLSEL++++P +FK +V+ ++
Sbjct: 73  LSYSRFINGLKKANIEINRKVLSELAINDPEAFKEIVEKAK 113

This model describes bacterial ribosomal protein L20 and its chloroplast equvalent. This protein binds directly to 23s ribosomal RNA and is necessary for the in vitro assembly process of the 50s ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. GO process changed accordingly (SS 5/09/03) [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

>gnl|CDD|214352 CHL00068, rpl20, ribosomal protein L20

 Score =  107 bits (270), Expect = 1e-31
 Identities = 46/102 (45%), Positives = 64/102 (62%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
           +K+I K A GFRG      R A ++  KAL  SYRDR+ KKRD R LWI RINA  R++G
Sbjct: 14  RKKILKFASGFRGAHSRLFRTANQQKMKALVSSYRDRKKKKRDFRRLWITRINAAIRENG 73

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN 104
           V+Y  F+H L K  I LNRK+L+++++ +P  F  + +    
Sbjct: 74  VSYSKFIHNLYKNQILLNRKILAQIAILDPNCFYTISNKIIK 115

Length = 115

>gnl|CDD|237748 PRK14537, PRK14537, 50S ribosomal protein L20/unknown domain fusion protein; Provisional

 Score = 97.0 bits (241), Expect = 5e-26
 Identities = 44/101 (43%), Positives = 66/101 (65%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
           +K++ K+AKG+ G      + A E+V ++LQY+YRDR+ +KRD R LWI RINAG    G
Sbjct: 14  RKKVLKMAKGYFGSKSTLYKTAHEQVMRSLQYAYRDRKQRKRDFRKLWISRINAGAMLCG 73

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 103
           + Y   MHGL    + +NRKVLS+L+  +P  F   V++++
Sbjct: 74  IKYSRLMHGLALAKVDINRKVLSDLAHLQPEVFVQYVELAK 114

Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
COG0292	118	RplT Ribosomal protein L20 [Translation, ribosomal	100.0
PTZ00030	121	60S ribosomal protein L20; Provisional	100.0
TIGR01032	113	rplT_bact ribosomal protein L20. This protein bind	100.0
PRK05185	114	rplT 50S ribosomal protein L20; Provisional	100.0
CHL00068	115	rpl20 ribosomal protein L20	100.0
PF00453	108	Ribosomal_L20: Ribosomal protein L20; InterPro: IP	100.0
PRK14537	230	50S ribosomal protein L20/unknown domain fusion pr	100.0
KOG4707	147	consensus Mitochondrial/chloroplast ribosomal prot	100.0

>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7e-55  Score=319.76  Aligned_cols=106  Identities=49%  Similarity=0.917  Sum_probs=103.9

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .||+|||+||||||+++++||+|+|+|++|++|||+|||++|||||+|||+|||||+|++|+|||+||+||+++||+|||
T Consensus        13 RrKkiLK~AKG~~G~r~~~~r~Akq~v~ka~~yaYrdRr~rKRdFR~LWI~RINAA~R~~GlsYS~fi~gLkkA~I~inR   92 (118)
T COG0292          13 RRKKILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQRKRDFRKLWIARINAAARENGLSYSRFINGLKKAGIEIDR   92 (118)
T ss_pred             HHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHcCchhhH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHhhCC
Q 033167           82 KVLSELSMHEPYSFKALVDISRNAFP  107 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~~~~  107 (125)
                      ||||||||+||.+|.+||+.++.+++
T Consensus        93 KvLadlAi~d~~aF~~lv~~aK~al~  118 (118)
T COG0292          93 KVLADLAINDPAAFAALVEKAKAALA  118 (118)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998764

>PTZ00030 60S ribosomal protein L20; Provisional

Probab=100.00  E-value=1.9e-54  Score=320.00  Aligned_cols=116  Identities=53%  Similarity=0.879  Sum_probs=110.7

Q ss_pred             CcHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchh
Q 033167            1 MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLN   80 (125)
Q Consensus         1 ~~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LN   80 (125)
                      ++|++||++|+||+|++|+|||+|+|+|+|||+|||+|||+|||+||+|||+|||||+|++|++||.||++|+++||.||
T Consensus         3 ~rrkkilk~AkGf~G~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~~Ys~fi~~L~k~~i~LN   82 (121)
T PTZ00030          3 IPRDKVFKLAKGFRGRSKNCFKLARNRVMKALLYSYISRRKRKRILRVHWIQTINAATREHNMTYSRFINGLNNSNIQLN   82 (121)
T ss_pred             chHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhhhChHHHHHHHHHHHhhCCCCCCCCCCC
Q 033167           81 RKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHPP  116 (125)
Q Consensus        81 RK~La~LAi~dp~sF~~Lv~~ak~~~~~~~~~~~~~  116 (125)
                      |||||||||+||.+|++||+.++.+++..+..|-..
T Consensus        83 RK~Ls~LAi~dp~sF~~lv~~~k~~l~~~~~~~~~~  118 (121)
T PTZ00030         83 RKILANLAITEPFSFKALVDESKYQLNERKEKPRDI  118 (121)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhcccccccccc
Confidence            999999999999999999999999887776665544

>TIGR01032 rplT_bact ribosomal protein L20

Probab=100.00  E-value=2.6e-53  Score=310.76  Aligned_cols=102  Identities=54%  Similarity=0.960  Sum_probs=100.2

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++|+|||+|+|+|+|||+|||+|||+|||+||+|||+|||||+|++|+|||.||++|+++||.|||
T Consensus        12 rrkkilk~akGf~G~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~~Ys~fi~~L~~~~i~LnR   91 (113)
T TIGR01032        12 RRKKILKQAKGFRGTRKRHYRVAKQTVIKAMAYAYRDRRQRKRDFRSLWITRINAAARQHGLSYSRFINGLKKANIEINR   91 (113)
T ss_pred             HHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCccH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHH
Q 033167           82 KVLSELSMHEPYSFKALVDISR  103 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak  103 (125)
                      |||||||++||.+|++||+.++
T Consensus        92 KvLa~lAi~dp~~F~~lv~~~k  113 (113)
T TIGR01032        92 KVLSELAINDPEAFAEIVEQAK  113 (113)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhC
Confidence            9999999999999999999874

This protein binds directly to 23s ribosomal RNA and is necessary for the in vitro assembly process of the 50s ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. GO process changed accordingly

>PRK05185 rplT 50S ribosomal protein L20; Provisional

Probab=100.00  E-value=6.9e-53  Score=308.85  Aligned_cols=103  Identities=51%  Similarity=0.930  Sum_probs=101.0

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++++||++|+|+|+|||+|||+|||+|||+||+|||+||||++|++|+|||+||++|+++||.|||
T Consensus        12 rrkkilk~akGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~~Ys~fi~~L~~~~i~LNR   91 (114)
T PRK05185         12 RRKKILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQKKRDFRKLWIARINAAARQNGLSYSRFINGLKKAGIEIDR   91 (114)
T ss_pred             HHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHh
Q 033167           82 KVLSELSMHEPYSFKALVDISRN  104 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~  104 (125)
                      ||||||||+||.+|++||+.++.
T Consensus        92 K~La~lAi~dp~~F~~lv~~~k~  114 (114)
T PRK05185         92 KVLADLAVNDPAAFAALVEKAKA  114 (114)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHhC
Confidence            99999999999999999999863

>CHL00068 rpl20 ribosomal protein L20

Probab=100.00  E-value=9.7e-53  Score=308.61  Aligned_cols=102  Identities=45%  Similarity=0.785  Sum_probs=100.0

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++++||++|+|+|+|||+|||+|||+|||+||+|||+|||||+|++|+|||+||++|+++||.|||
T Consensus        13 rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~gL~~~~i~LnR   92 (115)
T CHL00068         13 RRKKILKFASGFRGAHSRLFRTANQQKMKALVSSYRDRKKKKRDFRRLWITRINAAIRENGVSYSKFIHNLYKNQILLNR   92 (115)
T ss_pred             HHHHHHHHhccCCCcccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCccH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHH
Q 033167           82 KVLSELSMHEPYSFKALVDISR  103 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak  103 (125)
                      |||||||++||.+|++||+.+.
T Consensus        93 KvLa~LAi~dp~~F~~lv~~~~  114 (115)
T CHL00068         93 KILAQIAILDPNCFYTISNKII  114 (115)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHh
Confidence            9999999999999999999763

>PF00453 Ribosomal_L20: Ribosomal protein L20; InterPro: IPR005813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.6e-51  Score=297.93  Aligned_cols=97  Identities=61%  Similarity=1.080  Sum_probs=95.8

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      +|++||++|+||+|++++|||+|+|+|+|||+|||+|||+|||+||+|||+|||||+|++|++||.||++|+++||.|||
T Consensus        12 rrkkilk~akGf~G~~~~~~r~a~q~v~kal~yay~~Rk~kKR~fR~lWI~RINAa~r~~g~~Ys~fi~~L~~~~i~LNR   91 (108)
T PF00453_consen   12 RRKKILKLAKGFRGRRSNCYRIAKQQVMKALQYAYRDRKLKKRDFRRLWITRINAAAREHGLSYSRFINGLKKANIELNR   91 (108)
T ss_dssp             HHHHHHHHTTTSSGGGGTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTHHHHHHHHHHCTSSTSC
T ss_pred             HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcCcH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHH
Q 033167           82 KVLSELSMHEPYSFKAL   98 (125)
Q Consensus        82 K~La~LAi~dp~sF~~L   98 (125)
                      ||||||||+||.+|++|
T Consensus        92 KiLa~LAi~dp~~F~~L  108 (108)
T PF00453_consen   92 KILADLAINDPESFKSL  108 (108)
T ss_dssp             TTGGGHHTSSHHHHHHH
T ss_pred             HHHHHHHhcCHHHHhhC
Confidence            99999999999999987

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L20 is a protein from the large (50S) subunit; in Escherichia coli it is known to bind directly to the 23S rRNA, and is required for ribosome assembly, but does not take part in protein synthesis. It belongs to a family of ribosomal proteins, including L20 from eubacteria, plant and alga chloroplasts and cyanelles [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBO_S 3CF5_N 3PIO_N 3PIP_N 2ZJQ_N 2ZJR_N 2ZJP_N 3DLL_N 3KIT_U 2X9U_U ....

>PRK14537 50S ribosomal protein L20/unknown domain fusion protein; Provisional

Probab=100.00  E-value=2.8e-50  Score=322.78  Aligned_cols=105  Identities=42%  Similarity=0.798  Sum_probs=103.1

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||||++|+|||+|+|+|+|||+|||+|||+|||+||+|||+|||||+|++|++||.||+||+++||.|||
T Consensus        13 RRKKILKlAKGfrGrrs~lyR~A~q~V~KAL~YAYrdRK~KKRdFR~LWItRINAAaR~~GlsYS~fI~gLkka~I~LNR   92 (230)
T PRK14537         13 RRKKVLKMAKGYFGSKSTLYKTAHEQVMRSLQYAYRDRKQRKRDFRKLWISRINAGAMLCGIKYSRLMHGLALAKVDINR   92 (230)
T ss_pred             HHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCccH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHhhC
Q 033167           82 KVLSELSMHEPYSFKALVDISRNAF  106 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~~~  106 (125)
                      ||||||||+||.+|.+||+.++.++
T Consensus        93 KvLAdLAI~Dp~sF~~Lv~~ak~al  117 (230)
T PRK14537         93 KVLSDLAHLQPEVFVQYVELAKKFL  117 (230)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999765

>KOG4707 consensus Mitochondrial/chloroplast ribosomal protein L20 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-37  Score=235.12  Aligned_cols=115  Identities=53%  Similarity=0.888  Sum_probs=109.8

Q ss_pred             CcHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchh
Q 033167            1 MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLN   80 (125)
Q Consensus         1 ~~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LN   80 (125)
                      |.|++|+++|+||||++++|||.|.++|+|||+|+++||.+||++||.|||+||||++++||+.||.|+++|.+++|.||
T Consensus        19 ~rr~~l~k~Aa~frgr~~~~~r~A~r~v~rAlvy~~k~R~~kK~~mr~lwieRv~A~~~e~gv~y~~F~~~L~k~~ilLn   98 (147)
T KOG4707|consen   19 MRRQELFKFAAHFRGRKRRCYRLAVRTVIRALVYATKDRYLKKRDMRTLWIERVNAGAAEHGVRYSPFKHGLHKSPILLN   98 (147)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccccccCCccccccchh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhhhChHHHHHHHHHHHhhCCCCCCCCCC
Q 033167           81 RKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP  115 (125)
Q Consensus        81 RK~La~LAi~dp~sF~~Lv~~ak~~~~~~~~~~~~  115 (125)
                      ||+|||||++||.+|.+||+.++.......+++.+
T Consensus        99 ~k~Lsqlai~eP~sf~~lv~~~k~r~~g~~~i~q~  133 (147)
T KOG4707|consen   99 RKVLSQLAIVEPRSFCALVVLSKERHPGMHPILQP  133 (147)
T ss_pred             HHHhhhhhhhCchhhhhHhhccHhhCCCCCcccCh
Confidence            99999999999999999999999977777666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
1pnu_O	117	Crystal Structure Of A Streptomycin Dependent Ribos		2e-27
1nkw_O	118	Crystal Structure Of The Large Ribosomal Subunit Fr		2e-27
2ghj_A	118	Crystal Structure Of Folded And Partially Unfolded		2e-19
2ftc_L	118	Structural Model For The Large Subunit Of The Mamma		5e-18
2j01_U	118	Structure Of The Thermus Thermophilus 70s Ribosome		8e-18
3fin_U	117	T. Thermophilus 70s Ribosome In Complex With Mrna,		9e-18
3mrz_Q	116	Recognition Of The Amber Stop Codon By Release Fact		7e-17
1p85_O	117	Real Space Refined Coordinates Of The 50s Subunit F		8e-17
1vs6_Q	118	Crystal Structure Of The Bacterial Ribosome From Es		8e-17
2gya_O	115	Structure Of The 50s Subunit Of A Pre-Translocation		1e-16
3bbo_S	119	Homology Model For The Spinach Chloroplast 50s Subu		4e-13
1gyz_A	60	Bacterial Ribosomal Protein L20 From Aquifex Aeolic		4e-10

>pdb|1PNU|O Chain O, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 117

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 72/102 (70%)
Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ K AKGF G      R A + +  A  Y YRDRRNKKRD R LWIQRINAG R HG+
Sbjct: 14  KKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGM 73
Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           NY  F++GL + NI LNRKVL++++  EP +FKALVD SRNA
Sbjct: 74  NYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA 115

>pdb|1NKW|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 118

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 72/102 (70%)
Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ K AKGF G      R A + +  A  Y YRDRRNKKRD R LWIQRINAG R HG+
Sbjct: 15  KKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGM 74
Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           NY  F++GL + NI LNRKVL++++  EP +FKALVD SRNA
Sbjct: 75  NYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA 116

>pdb|2GHJ|A Chain A, Crystal Structure Of Folded And Partially Unfolded Forms Of Aquifex Aeolicus Ribosomal Protein L20 Length = 118

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 66/96 (68%)
Query: 11  KGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMH 70
           KG+RG+     R A+E V +AL Y YRDR+ +KR+ R LWI RINA  R +G+NY  F++
Sbjct: 20  KGYRGQRSRSYRRAKEAVXRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFIN 79
Query: 71  GLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAF 106
           GL K  I+L+RK+L++ ++ +P +F+ +V+  + A 
Sbjct: 80  GLKKAGIELDRKILADXAVRDPQAFEQVVNKVKEAL 115

>pdb|2FTC|L Chain L, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 118

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 66/99 (66%)
Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           +E+ K A+ FRGR   C R+A   V +A     + R  KK++MR+LWI RI A +++HG+
Sbjct: 15  QEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGL 74
Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDIS 102
            Y   +  L+K  ++LNRKVL++L+++EP +FK+L  ++
Sbjct: 75  KYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 113

>pdb|2J01|U Chain U, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 118

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 67/102 (65%)
Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I KLAKG+ G      R ARE +  A  Y+Y  R+ +KRD R LWI RINA  RQHG+
Sbjct: 15  KKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGL 74
Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           NY  F+HGL K  I+++RK L++L++ EP  F  LV+ ++ A
Sbjct: 75  NYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAA 116

>pdb|3FIN|U Chain U, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 117

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 67/102 (65%)
Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I KLAKG+ G      R ARE +  A  Y+Y  R+ +KRD R LWI RINA  RQHG+
Sbjct: 14  KKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGL 73
Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           NY  F+HGL K  I+++RK L++L++ EP  F  LV+ ++ A
Sbjct: 74  NYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAA 115

>pdb|3MRZ|Q Chain Q, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 116

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 4   KEIFKLAKGFRG-RAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
           K+I KLAKG+ G R+K+  R ARE +  A  Y+Y  R+ +KRD R LWI RINA  RQHG
Sbjct: 14  KKILKLAKGYWGLRSKS--RKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHG 71
Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           +NY  F+HGL K  I+++RK L++L++ EP  F  LV+ ++ A
Sbjct: 72  LNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAA 114

>pdb|1P85|O Chain O, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 117

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 72/104 (69%)
Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G+
Sbjct: 14  KKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGI 73
Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 107
           +Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A  
Sbjct: 74  SYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA 117

>pdb|1VS6|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 118

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 72/104 (69%)
Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G+
Sbjct: 15  KKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGI 74
Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 107
           +Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A  
Sbjct: 75  SYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA 118

>pdb|2GYA|O Chain O, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 115

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 72/103 (69%)
Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G+
Sbjct: 13  KKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGI 72
Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAF 106
           +Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A 
Sbjct: 73  SYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL 115

>pdb|3BBO|S Chain S, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 119

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 10  AKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV--NYGN 67
           A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA  R+ GV  NY  
Sbjct: 21  ASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGVYYNYSK 80
Query: 68  FMHGLMKENIQLNRKVLSELSMHEP 92
           F+H L K  + LNRK+L+++++  P
Sbjct: 81  FIHDLYKRQLLLNRKILAQIAILNP 105

>pdb|1GYZ|A Chain A, Bacterial Ribosomal Protein L20 From Aquifex Aeolicus Length = 60

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 50  WIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAF 106
           WI RINA  R +G+NY  F++GL K  I+L+RK+L+++++ +P +F+ +V+  + A 
Sbjct: 1   WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEAL 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
2ftc_L	118	MRPL20 protein; mitochondrial ribosome, large ribo	9e-52
2zjr_N	118	50S ribosomal protein L20; ribosome, large ribosom	4e-50
3v2d_U	118	50S ribosomal protein L20; ribosome associated inh	8e-50
2ghj_A	118	50S ribosomal protein L20; folding intermediate, r	9e-50
3r8s_Q	117	50S ribosomal protein L20; protein biosynthesis, R	2e-49
3bbo_S	119	Ribosomal protein L20; large ribosomal subunit, sp	2e-44

>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 118

 Score =  158 bits (402), Expect = 9e-52
 Identities = 40/103 (38%), Positives = 66/103 (64%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
            +E+ K A+ FRGR   C R+A   V +A     + R  KK++MR+LWI RI A +++HG
Sbjct: 14  IQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHG 73

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           + Y   +  L+K  ++LNRKVL++L+++EP +FK+L  ++   
Sbjct: 74  LKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALASRR 116

>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ... Length = 118

 Score =  154 bits (391), Expect = 4e-50
 Identities = 59/102 (57%), Positives = 72/102 (70%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K++ K AKGF G      R A + +  A  Y YRDRRNKKRD R LWIQRINAG R HG+
Sbjct: 15  KKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGM 74

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           NY  F++GL + NI LNRKVL++++  EP +FKALVD SRNA
Sbjct: 75  NYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA 116

>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ... Length = 118

 Score =  153 bits (389), Expect = 8e-50
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
            K+I KLAKG+ G      R ARE +  A  Y+Y  R+ +KRD R LWI RINA  RQHG
Sbjct: 14  HKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHG 73

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           +NY  F+HGL K  I+++RK L++L++ EP  F  LV+ ++ A
Sbjct: 74  LNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAA 116

>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A Length = 118

 Score =  153 bits (389), Expect = 9e-50
 Identities = 48/105 (45%), Positives = 74/105 (70%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
           KK+I KLAKG+RG+     R A+E V +AL Y YRDR+ +KR+ R LWI RINA  R +G
Sbjct: 12  KKKILKLAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYG 71

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 107
           +NY  F++GL K  I+L+RK+L+++++ +P +F+ +V+  + A  
Sbjct: 72  LNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQ 116

>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ... Length = 117

 Score =  152 bits (387), Expect = 2e-49
 Identities = 45/102 (44%), Positives = 72/102 (70%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G+
Sbjct: 14  KKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGI 73

Query: 64  NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           +Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct: 74  SYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 115

>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 119

 Score =  139 bits (353), Expect = 2e-44
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 2/99 (2%)

Query: 4   KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV 63
           K+I   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA  R+ GV
Sbjct: 15  KKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGV 74

Query: 64  --NYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 100
             NY  F+H L K  + LNRK+L+++++  P     + +
Sbjct: 75  YYNYSKFIHDLYKRQLLLNRKILAQIAILNPNCIYMIYN 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3v2d_U	118	50S ribosomal protein L20; ribosome associated inh	100.0
3r8s_Q	117	50S ribosomal protein L20; protein biosynthesis, R	100.0
2ghj_A	118	50S ribosomal protein L20; folding intermediate, r	100.0
2zjr_N	118	50S ribosomal protein L20; ribosome, large ribosom	100.0
2ftc_L	118	MRPL20 protein; mitochondrial ribosome, large ribo	100.0
3bbo_S	119	Ribosomal protein L20; large ribosomal subunit, sp	100.0

>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...

Probab=100.00  E-value=1.8e-55  Score=323.24  Aligned_cols=106  Identities=46%  Similarity=0.782  Sum_probs=103.3

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||+||++|+++||+|||
T Consensus        13 Rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~gL~k~~i~LNR   92 (118)
T 3v2d_U           13 KHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDR   92 (118)
T ss_dssp             HHHHHHHHTTTCSGGGGTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCCCH
T ss_pred             HHHHHHHHhccccccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCcH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHhhCC
Q 033167           82 KVLSELSMHEPYSFKALVDISRNAFP  107 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~~~~  107 (125)
                      ||||||||+||.+|++||+.++.+++
T Consensus        93 K~La~lAi~dp~~F~~lv~~ak~~~~  118 (118)
T 3v2d_U           93 KNLADLAVREPQVFAELVERAKAAQG  118 (118)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998763

>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...

Probab=100.00  E-value=1.8e-55  Score=322.91  Aligned_cols=106  Identities=42%  Similarity=0.794  Sum_probs=103.5

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||+||++|+++||+|||
T Consensus        12 Rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~L~k~~i~LNR   91 (117)
T 3r8s_Q           12 RHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDR   91 (117)
T ss_dssp             HHHHHHHHTTTCCTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHhccccCcccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCcH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHhhCC
Q 033167           82 KVLSELSMHEPYSFKALVDISRNAFP  107 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~~~~  107 (125)
                      ||||||||+||.+|++||+.++++++
T Consensus        92 K~La~lAi~dp~~F~~lv~~ak~~~~  117 (117)
T 3r8s_Q           92 KILADIAVFDKVAFTALVEKAKAALA  117 (117)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998753

>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A

Probab=100.00  E-value=2.1e-55  Score=322.96  Aligned_cols=105  Identities=46%  Similarity=0.857  Sum_probs=97.2

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||++|+++||+|||
T Consensus        11 rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYS~fi~gL~k~~I~LNR   90 (118)
T 2ghj_A           11 KKKKILKLAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFINGLKKAGIELDR   90 (118)
T ss_dssp             -------CCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHTTTTCCCCH
T ss_pred             HHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHhhC
Q 033167           82 KVLSELSMHEPYSFKALVDISRNAF  106 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~~~  106 (125)
                      ||||||||+||.+|.+||+.++.++
T Consensus        91 KvLA~lAi~dp~~F~~lv~~ak~~l  115 (118)
T 2ghj_A           91 KILADMAVRDPQAFEQVVNKVKEAL  115 (118)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999876

>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ...

Probab=100.00  E-value=9e-55  Score=319.56  Aligned_cols=104  Identities=57%  Similarity=0.903  Sum_probs=102.0

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||++|+++||+|||
T Consensus        13 rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYS~fi~gL~k~~I~LNR   92 (118)
T 2zjr_N           13 RHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNR   92 (118)
T ss_dssp             HHHHHHTTCSSCCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHCTTCCCC
T ss_pred             HHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHhh
Q 033167           82 KVLSELSMHEPYSFKALVDISRNA  105 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~~  105 (125)
                      ||||||||+||.+|.+||+.++.+
T Consensus        93 KvLA~lAi~dp~~F~~lv~~ak~~  116 (118)
T 2zjr_N           93 KVLADIAAREPEAFKALVDASRNA  116 (118)
T ss_dssp             SSHHHHHHHCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHh
Confidence            999999999999999999999864

>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=2.1e-54  Score=317.68  Aligned_cols=103  Identities=39%  Similarity=0.712  Sum_probs=101.4

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||++|+++||+|||
T Consensus        13 rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~sYs~fi~~L~k~~I~LNR   92 (118)
T 2ftc_L           13 RIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNR   92 (118)
T ss_pred             HHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHh
Q 033167           82 KVLSELSMHEPYSFKALVDISRN  104 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~  104 (125)
                      ||||||||+||.+|++||+.++.
T Consensus        93 KvLa~lAi~dp~~F~~lv~~ak~  115 (118)
T 2ftc_L           93 KVLADLAIYEPKTFKSLAALASR  115 (118)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHh
Confidence            99999999999999999999875

>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1.5e-53  Score=313.48  Aligned_cols=104  Identities=37%  Similarity=0.609  Sum_probs=101.9

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCC--ChHHHHHHHHHcCcch
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV--NYGNFMHGLMKENIQL   79 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~Gl--sYs~fi~~Lkk~~i~L   79 (125)
                      .|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+  |||.||++|+++||+|
T Consensus        13 rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~gl~~sYs~fi~~L~k~~I~L   92 (119)
T 3bbo_S           13 RRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGVYYNYSKFIHDLYKRQLLL   92 (119)
T ss_dssp             HHHHHHHHCSSCSSSTTSSHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHhccccccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCc
Confidence            58999999999999999999999999999999999999999999999999999999999999  9999999999999999


Q ss_pred             hhhHHHHHhhhChHHHHHHHHHHHhh
Q 033167           80 NRKVLSELSMHEPYSFKALVDISRNA  105 (125)
Q Consensus        80 NRK~La~LAi~dp~sF~~Lv~~ak~~  105 (125)
                      ||||||||||+||.+|.+|++.+++.
T Consensus        93 NRKvLa~lAi~dp~~F~~l~~~~k~~  118 (119)
T 3bbo_S           93 NRKILAQIAILNPNCIYMIYNEIIKK  118 (119)
T ss_dssp             SCSSGGGGTTSCTTTTTHHHHHHHHH
T ss_pred             cHHHHHHHHHhCHHHHHHHHHHHhhc
Confidence            99999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d2j01u1	117	a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus	8e-45
d2zjrn1	117	a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinoco	1e-44
d2gyco1	115	a.144.2.1 (O:2-116) Ribosomal protein L20 {Escheri	2e-42
d1gyza_	60	a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeol	3e-25

>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus thermophilus [TaxId: 274]} Length = 117

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Thermus thermophilus [TaxId: 274]

 Score =  139 bits (353), Expect = 8e-45
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
            K+I KLAKG+ G      R ARE +  A  Y+Y  R+ +KRD R LWI RINA  RQHG
Sbjct: 13  HKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHG 72

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           +NY  F+HGL K  I+++RK L++L++ EP  F  LV+ ++ A
Sbjct: 73  LNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAA 115

>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]} Length = 117

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  139 bits (352), Expect = 1e-44
 Identities = 59/103 (57%), Positives = 72/103 (69%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
            K++ K AKGF G      R A + +  A  Y YRDRRNKKRD R LWIQRINAG R HG
Sbjct: 13  HKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHG 72

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           +NY  F++GL + NI LNRKVL++++  EP +FKALVD SRNA
Sbjct: 73  MNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA 115

>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli [TaxId: 562]} Length = 115

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Escherichia coli [TaxId: 562]

 Score =  133 bits (337), Expect = 2e-42
 Identities = 45/103 (43%), Positives = 72/103 (69%)

Query: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHG 62
            K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G
Sbjct: 12  HKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNG 71

Query: 63  VNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           ++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct: 72  ISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 114

>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]} Length = 60

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Aquifex aeolicus [TaxId: 63363]

 Score = 88.5 bits (220), Expect = 3e-25
 Identities = 23/56 (41%), Positives = 41/56 (73%)

Query: 50  WIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 105
           WI RINA  R +G+NY  F++GL K  I+L+RK+L+++++ +P +F+ +V+  + A
Sbjct: 1   WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEA 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d2zjrn1	117	Ribosomal protein L20 {Deinococcus radiodurans [Ta	100.0
d2j01u1	117	Ribosomal protein L20 {Thermus thermophilus [TaxId	100.0
d2gyco1	115	Ribosomal protein L20 {Escherichia coli [TaxId: 56	100.0
d1gyza_	60	Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63	99.96

>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.5e-54  Score=315.11  Aligned_cols=106  Identities=56%  Similarity=0.875  Sum_probs=103.7

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++|+||++|+|+|+|||+|||+|||+|||+||+|||+|||||+|++|+|||.||++|+++||.|||
T Consensus        12 rrkkilk~akGfrG~~s~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~gl~YS~fi~~L~~~~I~LnR   91 (117)
T d2zjrn1          12 RHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNR   91 (117)
T ss_dssp             HHHHHHTTCSSCCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHCTTCCCC
T ss_pred             HHHHHHHHccccCCCccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCcH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHhhCC
Q 033167           82 KVLSELSMHEPYSFKALVDISRNAFP  107 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~~~~  107 (125)
                      |||||||++||.+|++||+.++++++
T Consensus        92 K~Ls~lAi~dp~~F~~lv~~aK~a~~  117 (117)
T d2zjrn1          92 KVLADIAAREPEAFKALVDASRNARQ  117 (117)
T ss_dssp             SSHHHHHHHCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998763

>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.2e-54  Score=312.91  Aligned_cols=106  Identities=46%  Similarity=0.782  Sum_probs=103.9

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++|+||++|+|+|+|||+|||+|||+|||+||+|||+|||||+|++|+|||+||++|+++||.|||
T Consensus        12 rrkkilk~akGfrG~~s~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~glsYS~fi~~L~k~~I~LnR   91 (117)
T d2j01u1          12 KHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDR   91 (117)
T ss_dssp             HHHHHHHHTTTCSSGGGTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHTTCCSCSC
T ss_pred             HHHHHHHHccccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCcccH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHhhCC
Q 033167           82 KVLSELSMHEPYSFKALVDISRNAFP  107 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~~~~  107 (125)
                      |||||||++||++|++||+.++.+++
T Consensus        92 KvLs~lAi~dp~~F~~lv~~~k~~~G  117 (117)
T d2j01u1          92 KNLADLAVREPQVFAELVERAKAAQG  117 (117)
T ss_dssp             TTTTTTTTSSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999874

>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-53  Score=309.98  Aligned_cols=105  Identities=43%  Similarity=0.800  Sum_probs=102.5

Q ss_pred             cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167            2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR   81 (125)
Q Consensus         2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR   81 (125)
                      .|++||++|+||+|++++||++|+|+|+|||+|||+|||.|||+||+|||+|||||+|++|+|||.||++|+++||.|||
T Consensus        11 rrkkilk~akGf~G~~~~~~r~A~~~v~kA~~ya~rdRk~kKr~fR~LWI~RINAA~r~~gl~Ys~fi~~L~k~~I~LnR   90 (115)
T d2gyco1          11 RHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDR   90 (115)
T ss_dssp             SSSSSSSSCTTCCSSSSSCSTTSSSSSSSTTSSSTTCCTTSTTTGGGSSSSSHHHHSSSSSCCGGGTSTTTTTSSSCCCS
T ss_pred             HHHHHHHHccccCcCccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCcCcH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhChHHHHHHHHHHHhhC
Q 033167           82 KVLSELSMHEPYSFKALVDISRNAF  106 (125)
Q Consensus        82 K~La~LAi~dp~sF~~Lv~~ak~~~  106 (125)
                      ||||||||+||++|++||+.++++|
T Consensus        91 KvLs~lAi~dp~~F~~lv~~aK~~l  115 (115)
T d2gyco1          91 KILADIAVFDKVAFTALVEKAKAAL  115 (115)
T ss_dssp             SSTTSSSSSCSSSSSTTTTTTTSCC
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHhhC
Confidence            9999999999999999999998764

>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.96  E-value=5.9e-31  Score=171.91  Aligned_cols=59  Identities=39%  Similarity=0.810  Sum_probs=57.6

Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHcCcchhhhHHHHHhhhChHHHHHHHHHHHhhCCC
Q 033167           50 WIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPG  108 (125)
Q Consensus        50 WI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNRK~La~LAi~dp~sF~~Lv~~ak~~~~~  108 (125)
                      ||+|||||+|++|++||+||++|++++|.||||||||||++||++|++||+.+++++..
T Consensus         1 WI~RINAa~r~~g~~YS~fi~~L~k~~I~LnRK~La~LAi~dp~~F~~lv~~~k~~l~~   59 (60)
T d1gyza_           1 WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQV   59 (60)
T ss_dssp             CCHHHHHHHTTTTCCSHHHHHHHHHHTCCCCSSSSHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHhCCCHHHHHHHHHHcCCCCcHHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999998864