Citrus Sinensis ID: 033182

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKLGNDFLLRFHFLLIKKL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHccHcEEEEEcc
Coil and Loop (DISEMBL)
maelrsichsnrgicflklGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIlefdpsnnqaKRTILRLQPLAEEKLEKMKEEMIGKLGNDFLLRFHFLLIKKL
Flexible Loop (DISEMBL)
maelrsichsnrgicflklGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEfdpsnnqakrtILRLQPLAEEKLEKMKEEMIGKLGNDFLLRFHFLLIKKL
Low Complexity Region (SEG)
MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAeeklekmkeemigklgNDFLLRFHFLLIKKL
Disordered region (IsUnstruct)
******ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP*******TILRL*************EMIGKLGNDFLLRFHFLLI***
Disordered Region (DISOPRED)
*AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT*************************DFLLRFHFLLIKK*
Disordered Region (DISEMBL)
MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKLGNDFLLRFHFLLIKKL
Disordered Region (DISPRO)
MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKLGNDFLLRFHFLLIKKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKLGNDFLLRFHFLLIKKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q91Z38	292	Tetratricopeptide repeat	yes	no	0.848	0.363	0.431	4e-17
Q99614	292	Tetratricopeptide repeat	yes	no	0.848	0.363	0.439	2e-16
Q3ZBR5	292	Tetratricopeptide repeat	yes	no	0.848	0.363	0.431	3e-16
Q15785	309	Mitochondrial import rece	no	no	0.616	0.249	0.357	3e-10
A4K2V0	309	Mitochondrial import rece	no	no	0.616	0.249	0.357	3e-10
O94826	608	Mitochondrial import rece	no	no	0.512	0.105	0.453	7e-10
Q9CZW5	611	Mitochondrial import rece	no	no	0.512	0.104	0.453	8e-10
Q75Q39	610	Mitochondrial import rece	no	no	0.512	0.104	0.453	8e-10
Q84JR9	682	TPR repeat-containing thi	no	no	0.72	0.131	0.319	9e-10
Q07617	926	Sperm-associated antigen	no	no	0.784	0.105	0.363	8e-09

>sp|Q91Z38|TTC1_MOUSE Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 10/116 (8%)

Query: 5   RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
           RS+  SNR    +K  K E +I +C+KA++LNPTY++A++RRAE +EK +  +EA+    
Sbjct: 154 RSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDY- 212

Query: 65  DLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGK---LGNDFLLRF 117
                 K +LE DPS +QA+   +RL    EE+ E++KEEM+GK   LGN  L  F
Sbjct: 213 ------KSVLEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPF 262

Mus musculus (taxid: 10090)

>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 10/116 (8%)

Query: 5   RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
           RSI  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+    
Sbjct: 154 RSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDY- 212

Query: 65  DLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGK---LGNDFLLRF 117
                 K ILE DPS +QA+   +RL    EE+ E++KEEM+GK   LGN  L  F
Sbjct: 213 ------KSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPF 262

Homo sapiens (taxid: 9606)

>sp|Q3ZBR5|TTC1_BOVIN Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 10/116 (8%)

Query: 5   RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
           RS+  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+    
Sbjct: 154 RSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDY- 212

Query: 65  DLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGK---LGNDFLLRF 117
                 K ILE DPS +QA+   +RL    EE+ E++KEEM+GK   LGN  L  F
Sbjct: 213 ------KSILEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPF 262

Bos taurus (taxid: 9913)

>sp|Q15785|TOM34_HUMAN Mitochondrial import receptor subunit TOM34 OS=Homo sapiens GN=TOMM34 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 7/84 (8%)

Query: 2   AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           + L S  +SNR +C+L L ++ E++K+CT+AL+L+   +KA  RRA+AH+ L+ ++ + A
Sbjct: 223 SNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFA 282

Query: 62  GIQDLMIVMKKILEFDPSNNQAKR 85
            I +L       L+ +P N  A++
Sbjct: 283 DISNL-------LQIEPRNGPAQK 299

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Homo sapiens (taxid: 9606)

>sp|A4K2V0|TOM34_PONAB Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 7/84 (8%)

Query: 2   AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           + L S  +SNR +C+L L ++ E++K+CT+AL+L+   +KA  RRA+AH+ L+ ++ + A
Sbjct: 223 SNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFA 282

Query: 62  GIQDLMIVMKKILEFDPSNNQAKR 85
            I +L       L+ +P N  A++
Sbjct: 283 DISNL-------LQIEPRNGPAQK 299

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Pongo abelii (taxid: 9601)

>sp|O94826|TOM70_HUMAN Mitochondrial import receptor subunit TOM70 OS=Homo sapiens GN=TOMM70A PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RRA+AHEKL++ +E +  +  
Sbjct: 153 STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTA 212

Query: 66  LMIV 69
           + I+
Sbjct: 213 VCIL 216

Receptor that accelerates the import of all mitochondrial precursor proteins.

Homo sapiens (taxid: 9606)

>sp|Q9CZW5|TOM70_MOUSE Mitochondrial import receptor subunit TOM70 OS=Mus musculus GN=Tomm70a PE=1 SV=2

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RRA+AHEKL++ +E +  +  
Sbjct: 156 STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTA 215

Query: 66  LMIV 69
           + I+
Sbjct: 216 VCIL 219

Receptor that accelerates the import of all mitochondrial precursor proteins.

Mus musculus (taxid: 10090)

>sp|Q75Q39|TOM70_RAT Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus GN=Tomm70a PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RRA+AHEKL++ +E +  +  
Sbjct: 155 STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTA 214

Query: 66  LMIV 69
           + I+
Sbjct: 215 VCIL 218

Receptor that accelerates the import of all mitochondrial precursor proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 59/97 (60%), Gaps = 7/97 (7%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           S+ + NR  C+ KLG +E+S+ +C +AL + P+Y KAL+RRA ++ KL  +E+A   ++D
Sbjct: 483 SVLYCNRAACWFKLGMWEKSVDDCNQALRIQPSYTKALLRRAASYGKLGRWEDA---VRD 539

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102
             ++ K++    P +++   ++ R +     K E+ K
Sbjct: 540 YEVLRKEL----PGDSEVAESLQRARNALSNKSEEPK 572

Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 1/99 (1%)

Query: 1   MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
           +A+  SI +SNR  C+LK G     I++C +ALEL+P  MK L+RRA A+E LE + +A 
Sbjct: 482 IADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAY 541

Query: 61  AGIQDLMIVMKKILEFDPSNNQAKRTILRLQ-PLAEEKL 98
              + ++ +   +   + S N+  R ++ L  P   EKL
Sbjct: 542 VDYKTVLQIDCGLQLANDSVNRLSRILMELDGPNWREKL 580

Plays a role in fertilization. Binds GTP and has GTPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
224142329	278	predicted protein [Populus trichocarpa]	0.864	0.388	0.754	1e-42
224091857	188	predicted protein [Populus trichocarpa]	0.864	0.574	0.728	8e-41
125532422	344	hypothetical protein OsI_34095 [Oryza sa	0.864	0.313	0.686	1e-39
18087888	548	putative tetratricopeptide repeat protei	0.864	0.197	0.686	1e-39
222613040	344	hypothetical protein OsJ_31954 [Oryza sa	0.864	0.313	0.686	1e-39
115482622	236	Os10g0486900 [Oryza sativa Japonica Grou	0.864	0.457	0.686	2e-39
255585483	253	heat shock protein 70 (HSP70)-interactin	0.864	0.426	0.720	3e-39
211853238	261	tetratricopeptide repeat protein [Solanu	0.864	0.413	0.694	9e-39
359806795	268	uncharacterized protein LOC100808386 [Gl	0.864	0.402	0.703	9e-39
357159759	229	PREDICTED: tetratricopeptide repeat prot	0.864	0.471	0.686	1e-38

>gi|224142329|ref|XP_002324511.1| predicted protein [Populus trichocarpa] gi|222865945|gb|EEF03076.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 97/118 (82%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           ELRSICHSNRG+CFLKLGKFE++IKEC+KALELNP+YMKAL+RR EAHEKLEHFEEAIA 
Sbjct: 144 ELRSICHSNRGVCFLKLGKFEDTIKECSKALELNPSYMKALVRRGEAHEKLEHFEEAIAD 203

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKL---GNDFLLRF 117
                  MKKILE DPSN+QAKRTI RL+PLA  K EKM EEMIGKL   GN  L RF
Sbjct: 204 -------MKKILELDPSNDQAKRTIRRLEPLAAAKREKMNEEMIGKLKDMGNTLLGRF 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091857|ref|XP_002309374.1| predicted protein [Populus trichocarpa] gi|222855350|gb|EEE92897.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (432), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 97/118 (82%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           ELRSICH NRG+CFLKLGK+E++IKEC++ALELNP+Y KAL+RR EAHEKLEHFEEAIA 
Sbjct: 54  ELRSICHFNRGVCFLKLGKYEDTIKECSRALELNPSYTKALVRRGEAHEKLEHFEEAIAD 113

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKL---GNDFLLRF 117
                  MKK LEFDPSN+QAK+TI RL+PLA EK EKMKEEMIGKL   GN  L RF
Sbjct: 114 -------MKKTLEFDPSNDQAKKTIRRLEPLAAEKREKMKEEMIGKLKEMGNSLLGRF 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125532422|gb|EAY78987.1| hypothetical protein OsI_34095 [Oryza sativa Indica Group]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 96/118 (81%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           ++RS CHSNR +CFLKLGK++E+IKECTKALELNP+Y+KAL+RR EAHEKLEH++EAIA 
Sbjct: 210 DIRSACHSNRAVCFLKLGKYDETIKECTKALELNPSYLKALLRRGEAHEKLEHYDEAIAD 269

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGK---LGNDFLLRF 117
                  MKKI+E DPSN QAKR++ RL+PLA EK EKMKEEMIGK   LGN  L RF
Sbjct: 270 -------MKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIGKLKDLGNSVLGRF 320

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18087888|gb|AAL59042.1|AC087182_25 putative tetratricopeptide repeat protein [Oryza sativa Japonica Group]

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/118 (68%), Positives = 96/118 (81%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           ++RS CHSNR +CFLKLGK++E+IKECTKALELNP+Y+KAL+RR EAHEKLEH++EAIA 
Sbjct: 414 DIRSACHSNRAVCFLKLGKYDETIKECTKALELNPSYLKALLRRGEAHEKLEHYDEAIAD 473

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGK---LGNDFLLRF 117
                  MKKI+E DPSN QAKR++ RL+PLA EK EKMKEEMIGK   LGN  L RF
Sbjct: 474 -------MKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIGKLKDLGNSVLGRF 524

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222613040|gb|EEE51172.1| hypothetical protein OsJ_31954 [Oryza sativa Japonica Group]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 96/118 (81%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           ++RS CHSNR +CFLKLGK++E+IKECTKALELNP+Y+KAL+RR EAHEKLEH++EAIA 
Sbjct: 210 DIRSACHSNRAVCFLKLGKYDETIKECTKALELNPSYLKALLRRGEAHEKLEHYDEAIAD 269

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGK---LGNDFLLRF 117
                  MKKI+E DPSN QAKR++ RL+PLA EK EKMKEEMIGK   LGN  L RF
Sbjct: 270 -------MKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIGKLKDLGNSVLGRF 320

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115482622|ref|NP_001064904.1| Os10g0486900 [Oryza sativa Japonica Group] gi|110289293|gb|AAP54357.2| TPR Domain containing protein, expressed [Oryza sativa Japonica Group] gi|113639513|dbj|BAF26818.1| Os10g0486900 [Oryza sativa Japonica Group] gi|215686667|dbj|BAG88920.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 96/118 (81%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           ++RS CHSNR +CFLKLGK++E+IKECTKALELNP+Y+KAL+RR EAHEKLEH++EAIA 
Sbjct: 102 DIRSACHSNRAVCFLKLGKYDETIKECTKALELNPSYLKALLRRGEAHEKLEHYDEAIAD 161

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGK---LGNDFLLRF 117
                  MKKI+E DPSN QAKR++ RL+PLA EK EKMKEEMIGK   LGN  L RF
Sbjct: 162 -------MKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIGKLKDLGNSVLGRF 212

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585483|ref|XP_002533434.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223526722|gb|EEF28954.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/118 (72%), Positives = 96/118 (81%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           ELRSICHSNRG+CFLKLGK+E++IKECTKALELN +Y+KAL+RR EAHEKLEHFEEAIA 
Sbjct: 119 ELRSICHSNRGVCFLKLGKYEDTIKECTKALELNSSYIKALLRRGEAHEKLEHFEEAIAD 178

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGK---LGNDFLLRF 117
                  MKKILE DPSN+QAK+ I  L+PLA  K EKMKEEMIGK   LGN+ L RF
Sbjct: 179 -------MKKILELDPSNDQAKKAIYLLEPLAAIKREKMKEEMIGKLKELGNNVLGRF 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211853238|emb|CAP16663.1| tetratricopeptide repeat protein [Solanum lycopersicum]

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 95/118 (80%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           E+RSICH+NR  CF KLGK EE+IKECTKALELNPTY+KAL+RRAEAHEKLEHFEEAI  
Sbjct: 127 EIRSICHANRAACFTKLGKHEETIKECTKALELNPTYIKALVRRAEAHEKLEHFEEAITD 186

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKL---GNDFLLRF 117
                  M KILE +PS++QA+RT++ L+PLA+EK EKMKEEMIGKL   GN  L RF
Sbjct: 187 -------MTKILELEPSHDQARRTVILLKPLADEKREKMKEEMIGKLKEMGNSILGRF 237

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806795|ref|NP_001241306.1| uncharacterized protein LOC100808386 [Glycine max] gi|255639737|gb|ACU20162.1| unknown [Glycine max]

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 95/118 (80%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           E+RSICHSNRG+CFLKLGK++ +IKECTKALELNP Y+KAL+RR EAHEKLEHFEEAIA 
Sbjct: 134 EIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYIKALVRRGEAHEKLEHFEEAIAD 193

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKL---GNDFLLRF 117
                  MKKILE D SN+QA++TI +L+PLA EK EKMKEEMI KL   GN  L RF
Sbjct: 194 -------MKKILEIDLSNDQARKTIRQLEPLAAEKREKMKEEMIAKLKDMGNSVLGRF 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357159759|ref|XP_003578550.1| PREDICTED: tetratricopeptide repeat protein 1-like [Brachypodium distachyon]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 95/118 (80%), Gaps = 10/118 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           ++RS CHSNR ICFLKLGK++E+IKECTKALELNP+Y+KAL+RR EAHEKLEH++EAIA 
Sbjct: 95  DIRSACHSNRSICFLKLGKYDEAIKECTKALELNPSYLKALVRRGEAHEKLEHYDEAIAD 154

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGK---LGNDFLLRF 117
                  MKKILE DPSN QAKR++ RL+PLA EK EKMKEEM+ K   LGN  L RF
Sbjct: 155 -------MKKILELDPSNVQAKRSLFRLEPLAAEKREKMKEEMLAKLKDLGNSVLGRF 205

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2118776	277	TPR1 "tetratricopeptide repeat	0.68	0.306	0.739	3e-30
UNIPROTKB|B6GVA2	261	int106 "Tetratricopeptide repe	0.68	0.325	0.695	2.7e-29
MGI|MGI:1914077	292	Ttc1 "tetratricopeptide repeat	0.632	0.270	0.430	7.6e-13
RGD|1359604	292	Ttc1 "tetratricopeptide repeat	0.632	0.270	0.441	7.6e-13
UNIPROTKB|E1BWM0	296	TTC1 "Uncharacterized protein"	0.632	0.266	0.441	8.1e-13
UNIPROTKB|Q99614	292	TTC1 "Tetratricopeptide repeat	0.632	0.270	0.441	1.3e-12
UNIPROTKB|F1RR38	292	TTC1 "Uncharacterized protein"	0.632	0.270	0.441	1.7e-12
UNIPROTKB|Q3ZBR5	292	TTC1 "Tetratricopeptide repeat	0.632	0.270	0.430	2.2e-12
ZFIN|ZDB-GENE-041114-80	330	ttc1 "tetratricopeptide repeat	0.632	0.239	0.406	4.6e-10
UNIPROTKB|Q15785	309	TOMM34 "Mitochondrial import r	0.616	0.249	0.357	5e-10

TAIR|locus:2118776 TPR1 "tetratricopeptide repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/92 (73%), Positives = 78/92 (84%)

Query:     3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
             ELRSIC+ NRG+CFLKLGK EE+IKECTKALELNPTY KAL+RRAEAHEKLEHFE+A+  
Sbjct:   143 ELRSICYLNRGVCFLKLGKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVT- 201

Query:    63 IQDLMIVMKKILEFDPSNNQAKRTILRLQPLA 94
               DL    KKILE DPSN+QA++ I RL+PLA
Sbjct:   202 --DL----KKILELDPSNDQARKGIRRLEPLA 227

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0051879 "Hsp90 protein binding" evidence=IPI

UNIPROTKB|B6GVA2 int106 "Tetratricopeptide repeat protein" [Solanum lycopersicum (taxid:4081)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 64/92 (69%), Positives = 76/92 (82%)

Query:     3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
             E+RSICH+NR  CF KLGK EE+IKECTKALELNPTY+KAL+RRAEAHEKLEHFEEAI  
Sbjct:   127 EIRSICHANRAACFTKLGKHEETIKECTKALELNPTYIKALVRRAEAHEKLEHFEEAITD 186

Query:    63 IQDLMIVMKKILEFDPSNNQAKRTILRLQPLA 94
                    M KILE +PS++QA+RT++ L+PLA
Sbjct:   187 -------MTKILELEPSHDQARRTVILLKPLA 211

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1914077 Ttc1 "tetratricopeptide repeat domain 1" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 7.6e-13, P = 7.6e-13
 Identities = 37/86 (43%), Positives = 57/86 (66%)

Query:     5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
             RS+  SNR    +K  K E +I +C+KA++LNPTY++A++RRAE +EK +  +EA+   +
Sbjct:   154 RSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEAL---E 210

Query:    65 DLMIVMKKILEFDPSNNQAKRTILRL 90
             D     K +LE DPS +QA+   +RL
Sbjct:   211 DY----KSVLEKDPSVHQAREACMRL 232

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

RGD|1359604 Ttc1 "tetratricopeptide repeat domain 1" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 7.6e-13, P = 7.6e-13
 Identities = 38/86 (44%), Positives = 57/86 (66%)

Query:     5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
             RS+  SNR    +K  K E +I +C+KA++LNPTY++A++RRAE +EK +  +EA+   +
Sbjct:   154 RSVLFSNRAAARMKQDKKEMAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEAL---E 210

Query:    65 DLMIVMKKILEFDPSNNQAKRTILRL 90
             D     K ILE DPS +QA+   +RL
Sbjct:   211 DY----KSILETDPSVHQAREACVRL 232

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IEA;ISO

UNIPROTKB|E1BWM0 TTC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 8.1e-13, P = 8.1e-13
 Identities = 38/86 (44%), Positives = 56/86 (65%)

Query:     5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
             R++  SNR    +K  K E ++ +C+KA+EL+P Y++AL+RRAE HEK E  +EA+   +
Sbjct:   158 RAVLFSNRAAAKMKQDKTEAALNDCSKAVELDPNYIRALLRRAELHEKTEKLDEAL---E 214

Query:    65 DLMIVMKKILEFDPSNNQAKRTILRL 90
             D     K ILE DPS +QA+   +RL
Sbjct:   215 DY----KAILEKDPSVHQAREACMRL 236

GO:0005778 "peroxisomal membrane" evidence=IEA

UNIPROTKB|Q99614 TTC1 "Tetratricopeptide repeat protein 1" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 38/86 (44%), Positives = 57/86 (66%)

Query:     5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
             RSI  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+   +
Sbjct:   154 RSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEAL---E 210

Query:    65 DLMIVMKKILEFDPSNNQAKRTILRL 90
             D     K ILE DPS +QA+   +RL
Sbjct:   211 DY----KSILEKDPSIHQAREACMRL 232

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

UNIPROTKB|F1RR38 TTC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 38/86 (44%), Positives = 56/86 (65%)

Query:     5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
             RSI  SNR    +K  K E +I +C+KA++LNP Y++A++RRAE +EK +  +EA+   +
Sbjct:   154 RSILFSNRAAARMKQDKKEMAISDCSKAIQLNPNYIRAILRRAELYEKTDKLDEAL---E 210

Query:    65 DLMIVMKKILEFDPSNNQAKRTILRL 90
             D     K ILE DPS +QA+   +RL
Sbjct:   211 DY----KSILEKDPSVHQAREACMRL 232

GO:0005778 "peroxisomal membrane" evidence=IEA

UNIPROTKB|Q3ZBR5 TTC1 "Tetratricopeptide repeat protein 1" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 37/86 (43%), Positives = 57/86 (66%)

Query:     5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
             RS+  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+   +
Sbjct:   154 RSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEAL---E 210

Query:    65 DLMIVMKKILEFDPSNNQAKRTILRL 90
             D     K ILE DPS +QA+   +RL
Sbjct:   211 DY----KSILEKDPSVHQAREACMRL 232

GO:0005778 "peroxisomal membrane" evidence=IEA

ZFIN|ZDB-GENE-041114-80 ttc1 "tetratricopeptide repeat domain 1" [Danio rerio (taxid:7955)]

 Score = 149 (57.5 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 35/86 (40%), Positives = 52/86 (60%)

Query:     5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
             RSI  SNR    L   K + +I +C+KA+ELNP Y++A++RRAE +EK +  +EA+   +
Sbjct:   191 RSILFSNRAASRLHQDKKDGAISDCSKAIELNPNYVRAILRRAELYEKTDKLDEAL---E 247

Query:    65 DLMIVMKKILEFDPSNNQAKRTILRL 90
             D     K +LE DP    A+   +RL
Sbjct:   248 DY----KTVLEKDPGIPAAREACMRL 269

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q15785 TOMM34 "Mitochondrial import receptor subunit TOM34" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 30/84 (35%), Positives = 54/84 (64%)

Query:     2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
             + L S  +SNR +C+L L ++ E++K+CT+AL+L+   +KA  RRA+AH+ L+ ++ + A
Sbjct:   223 SNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFA 282

Query:    62 GIQDLMIVMKKILEFDPSNNQAKR 85
              I +L       L+ +P N  A++
Sbjct:   283 DISNL-------LQIEPRNGPAQK 299

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0016021 "integral to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	9e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-08
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	5e-06
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	4e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	7e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	5e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 6  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
          +  + N    + KLGK+EE++++  KALEL+P   KA      A+ KL  +EEA+ 
Sbjct: 34 ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALE 89

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 49.6 bits (119), Expect = 2e-09
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 5  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-EHFEEAIAGI 63
           +    N G    KLG ++E+I+   KALEL+P   +A    A A+ KL + +EEA+   
Sbjct: 2  NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE-- 59

Query: 64 QDLMIVMKKILEFDP 78
                ++K LE DP
Sbjct: 60 -----DLEKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 51.5 bits (123), Expect = 9e-09
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 7/102 (6%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           +SNR  C   LG +E+ +++ T ALEL+P Y KAL RRA A++ L  + +A+  +    I
Sbjct: 163 YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCI 222

Query: 69  VMKKILEFDPSNNQAKRTILR-LQPLAEEKLEKMKEEMIGKL 109
           +          N Q+ + + R L+  AE K +++ E     L
Sbjct: 223 ID------GFRNEQSAQAVERLLKKFAESKAKEILETKPENL 258

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.4 bits (113), Expect = 4e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
          N G  + KLG ++E+++   KALEL+P    A    A A+ KL  +EEA+          
Sbjct: 5  NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALE-------DY 57

Query: 71 KKILEFDPSNNQA 83
          +K LE DP N +A
Sbjct: 58 EKALELDPDNAKA 70

Length = 100

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 41.2 bits (98), Expect = 2e-06
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTY 39
            N G  +LKLGK++E+++   KALELNP  
Sbjct: 4  LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 40.1 bits (95), Expect = 5e-06
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 8  CHSNRGICFLKLGKFEESIKECTKALELNPTY 39
             N G  +LKLG ++E+++   KALEL+P  
Sbjct: 3  ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
          +R    +KLG F E++ +  KA+EL+P+  KA +R+  A  KLE ++ A A ++
Sbjct: 41 DRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94

Length = 356

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 22 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81
          F  ++   T+A++L+P   +    RA+A+ KL +F EA+A          K +E DPS  
Sbjct: 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVAD-------ANKAIELDPSLA 70

Query: 82 QA 83
          +A
Sbjct: 71 KA 72

Length = 356

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 17/60 (28%), Positives = 35/60 (58%)

Query: 5   RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
            +    N G+C LK G F+++ K  T+AL+++P   ++L+  AE +     +++A A ++
Sbjct: 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTY 39
            N G+ + KLG +EE+++   KALEL+P  
Sbjct: 4  LYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 16 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           L+ G ++E++     AL   P   +AL+   EA  +     EA A
Sbjct: 7  ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAA 52

Length = 65

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 8  CHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKALIRRAEAHEKLEHFEEAI 60
            +N  +   +LG ++E+++   KALEL       +P   +AL   A  +  L  ++EA+
Sbjct: 7  ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 61 A 61
           
Sbjct: 67 E 67

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
KOG4234	271	consensus TPR repeat-containing protein [General f	99.78
KOG0553	304	consensus TPR repeat-containing protein [General f	99.67
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.6
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.56
PRK15359	144	type III secretion system chaperone protein SscB;	99.52
PRK15359	144	type III secretion system chaperone protein SscB;	99.46
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.43
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.41
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.4
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.37
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.33
PRK11189	296	lipoprotein NlpI; Provisional	99.33
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.26
PF13371	73	TPR_9: Tetratricopeptide repeat	99.24
KOG0553	304	consensus TPR repeat-containing protein [General f	99.23
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.23
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.21
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.2
PRK11189	296	lipoprotein NlpI; Provisional	99.19
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.19
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.18
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.14
PRK12370	553	invasion protein regulator; Provisional	99.11
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.11
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.09
KOG1126	638	consensus DNA-binding cell division cycle control	99.09
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.09
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.08
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.07
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.05
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.04
PRK12370	553	invasion protein regulator; Provisional	99.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.03
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.03
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.02
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.97
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.96
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.95
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.93
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.91
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.91
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.9
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.89
PRK15331	165	chaperone protein SicA; Provisional	98.89
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.88
PRK15331	165	chaperone protein SicA; Provisional	98.87
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.85
KOG1126	638	consensus DNA-binding cell division cycle control	98.85
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.85
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.85
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.84
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.83
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.82
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.82
PF12688	120	TPR_5: Tetratrico peptide repeat	98.8
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.79
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.78
KOG1125	579	consensus TPR repeat-containing protein [General f	98.78
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.78
PLN02789	320	farnesyltranstransferase	98.75
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.74
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.74
KOG1125	579	consensus TPR repeat-containing protein [General f	98.74
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.74
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.72
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.71
KOG2076	895	consensus RNA polymerase III transcription factor	98.71
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.68
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.67
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.67
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.64
PRK10803	263	tol-pal system protein YbgF; Provisional	98.64
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.64
PLN02789	320	farnesyltranstransferase	98.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.63
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.63
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.63
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.62
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.61
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.59
PF13428	44	TPR_14: Tetratricopeptide repeat	98.58
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.58
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.57
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.57
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.54
PRK10803	263	tol-pal system protein YbgF; Provisional	98.53
PF13431	34	TPR_17: Tetratricopeptide repeat	98.52
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.5
PF13428	44	TPR_14: Tetratricopeptide repeat	98.5
KOG2076	895	consensus RNA polymerase III transcription factor	98.49
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.48
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.48
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.44
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.42
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.4
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.39
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.38
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.35
KOG4234	271	consensus TPR repeat-containing protein [General f	98.35
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.33
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.32
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.32
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.31
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.3
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.28
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.28
PF13512	142	TPR_18: Tetratricopeptide repeat	98.27
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.25
KOG2003	840	consensus TPR repeat-containing protein [General f	98.23
KOG4555	175	consensus TPR repeat-containing protein [Function	98.2
PRK11906	458	transcriptional regulator; Provisional	98.2
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.19
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.15
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.14
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.13
KOG2003	840	consensus TPR repeat-containing protein [General f	98.11
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.11
PRK11906	458	transcriptional regulator; Provisional	98.1
KOG4555	175	consensus TPR repeat-containing protein [Function	98.1
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.1
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.09
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.06
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.06
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.05
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.04
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.04
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.01
PF13512	142	TPR_18: Tetratricopeptide repeat	98.0
PRK10941	269	hypothetical protein; Provisional	97.99
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.98
PRK14574	822	hmsH outer membrane protein; Provisional	97.98
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.98
PF12688	120	TPR_5: Tetratrico peptide repeat	97.97
PF13371	73	TPR_9: Tetratricopeptide repeat	97.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.96
PRK14574	822	hmsH outer membrane protein; Provisional	97.95
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.92
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.9
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.89
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.88
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.87
KOG3364	149	consensus Membrane protein involved in organellar	97.87
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.86
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.85
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.85
KOG1129	478	consensus TPR repeat-containing protein [General f	97.84
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.84
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.79
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.79
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.78
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.78
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.78
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.77
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.73
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.72
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.72
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.71
KOG1129	478	consensus TPR repeat-containing protein [General f	97.7
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.69
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.66
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.65
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.64
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.64
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.62
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.6
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.58
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.58
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.58
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.56
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.56
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.55
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.53
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.52
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.5
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.47
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.41
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.41
KOG1310	758	consensus WD40 repeat protein [General function pr	97.37
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.24
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.05
PF13431	34	TPR_17: Tetratricopeptide repeat	96.96
COG2912	269	Uncharacterized conserved protein [Function unknow	96.87
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.8
KOG2471	696	consensus TPR repeat-containing protein [General f	96.73
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.73
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.7
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.67
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.66
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.65
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.64
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.64
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.61
PLN03077	857	Protein ECB2; Provisional	96.58
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.57
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.55
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.47
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.38
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.35
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.35
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.31
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.17
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.16
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.14
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.13
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.03
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.97
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.93
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.91
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.88
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	95.71
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.71
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.68
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.67
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	95.63
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.62
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.57
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.57
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.49
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.41
PLN03077	857	Protein ECB2; Provisional	95.39
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.39
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.29
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.28
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.2
PLN03218	1060	maturation of RBCL 1; Provisional	95.2
COG3947	361	Response regulator containing CheY-like receiver a	95.11
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.11
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.03
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.87
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.8
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.78
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.75
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.59
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.58
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	94.54
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.49
PLN03218	1060	maturation of RBCL 1; Provisional	94.46
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.4
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.32
COG4455	273	ImpE Protein of avirulence locus involved in tempe	94.16
PF04212	69	MIT: MIT (microtubule interacting and transport) d	94.02
PRK04841	903	transcriptional regulator MalT; Provisional	93.99
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.73
PRK04841	903	transcriptional regulator MalT; Provisional	93.66
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	93.61
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.6
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.42
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	93.41
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.38
KOG1310	758	consensus WD40 repeat protein [General function pr	93.21
KOG1586	288	consensus Protein required for fusion of vesicles	93.15
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	93.11
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.08
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.97
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	92.63
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.38
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.36
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.33
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.25
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.21
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.12
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.94
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.7
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.59
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.58
cd02656	75	MIT MIT: domain contained within Microtubule Inter	91.43
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.26
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.21
KOG1915	677	consensus Cell cycle control protein (crooked neck	91.07
KOG3364	149	consensus Membrane protein involved in organellar	90.92
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.87
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.58
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	90.5
KOG2471	696	consensus TPR repeat-containing protein [General f	90.29
KOG1585	308	consensus Protein required for fusion of vesicles	90.12
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	90.1
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.93
KOG1586	288	consensus Protein required for fusion of vesicles	89.66
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.33
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	89.2
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.19
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.87
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	88.86
KOG1585	308	consensus Protein required for fusion of vesicles	88.66
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.37
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.34
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.09
PF13041	50	PPR_2: PPR repeat family	86.31
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	85.82
KOG2300	629	consensus Uncharacterized conserved protein [Funct	85.5
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.25
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	85.15
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.71
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	84.14
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.94
KOG0529	421	consensus Protein geranylgeranyltransferase type I	83.92
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	83.63
PF12854	34	PPR_1: PPR repeat	83.47
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	83.04
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	82.84
PRK10941	269	hypothetical protein; Provisional	82.81
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	81.82
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	81.65
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	81.45
KOG4814	872	consensus Uncharacterized conserved protein [Funct	81.43
COG3947	361	Response regulator containing CheY-like receiver a	81.24
KOG2581	493	consensus 26S proteasome regulatory complex, subun	80.81
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	80.7
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	80.54
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	80.02

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=3.2e-18  Score=118.95  Aligned_cols=113  Identities=55%  Similarity=0.747  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ..++.+|.|+|.|+++++.++.|+.++.++|.++|.+-+++.+++.+|.++.+|++|+.+       |+++++.+|+..+
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeD-------yKki~E~dPs~~e  203 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALED-------YKKILESDPSRRE  203 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHH-------HHHHHHhCcchHH
Confidence            568999999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHhh
Q 033182           83 AKRTILRLQPLAEEKLEKMKEEMIGKL---GNDFLLRFHFLLI  122 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  122 (125)
                      +...+.++-..+.++.++.+..++.++   ||.+++.||||+.
T Consensus       204 ar~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGlStd  246 (271)
T KOG4234|consen  204 AREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGLSTD  246 (271)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Confidence            999999999999999999999999998   9999999999974

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=2.8e-16  Score=114.26  Aligned_cols=91  Identities=33%  Similarity=0.514  Sum_probs=87.1

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|.++++|+||+.+|.++|.|+.|+++++.++.+||.+.++|.++|.+|..+|++++|++.       |+++++++|+|
T Consensus       110 l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a-------ykKaLeldP~N  182 (304)
T KOG0553|consen  110 LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA-------YKKALELDPDN  182 (304)
T ss_pred             cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH-------HHhhhccCCCc
Confidence            46899999999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKL   98 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~   98 (125)
                      ...+..|..+...+.+..
T Consensus       183 e~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  183 ESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            999999999888887765

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2.8e-14  Score=107.39  Aligned_cols=100  Identities=38%  Similarity=0.647  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ..+..++.|++.|+.++++|..|+..+++++.++|+|.+++|++|.++..+|+|+.|+.+       |+++++++|+|..
T Consensus       254 ~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~d-------f~ka~k~~P~Nka  326 (397)
T KOG0543|consen  254 ALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDD-------FQKALKLEPSNKA  326 (397)
T ss_pred             HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHH-------HHHHHHhCCCcHH
Confidence            467789999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHhhh
Q 033182           83 AKRTILRLQPLAEEKLEKMK---EEMIGKL  109 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~---~~~~~~~  109 (125)
                      +...|..+.+++.+..+.++   ..+|.+.
T Consensus       327 ~~~el~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  327 ARAELIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999998877765   5566655

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.56  E-value=3.1e-14  Score=83.16  Aligned_cols=67  Identities=34%  Similarity=0.509  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ++..|.++|.+++..|+|++|+..|++++.++|+++.+++++|.++..+| ++++|+..       ++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~-------~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIED-------FEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHH-------HHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHH-------HHHHHHcCc
Confidence            46789999999999999999999999999999999999999999999999 89999999       999999998

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.52  E-value=3e-13  Score=90.18  Aligned_cols=77  Identities=16%  Similarity=0.101  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL   88 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~   88 (125)
                      ++++|.++.+.|++++|+..|.+++.++|.+..+|+++|.++..+|++++|+..       |+++++++|+++.++..++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~-------y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF-------YGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCCcHHHHHHH
Confidence            455556666666666666666666666666666666666666666666666666       6666666666655555555


Q ss_pred             HHHH
Q 033182           89 RLQP   92 (125)
Q Consensus        89 ~~~~   92 (125)
                      .+..
T Consensus       100 ~~l~  103 (144)
T PRK15359        100 VCLK  103 (144)
T ss_pred             HHHH
Confidence            5443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.46  E-value=1.4e-12  Score=86.96  Aligned_cols=88  Identities=9%  Similarity=0.058  Sum_probs=82.6

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|....+|.++|.++...|++++|+..|++++.++|.++.+++++|.++..+|++++|+..       |.++++++|++
T Consensus        53 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~-------~~~Al~~~p~~  125 (144)
T PRK15359         53 AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA-------FQTAIKMSYAD  125 (144)
T ss_pred             cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCC
Confidence            35778899999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAE   95 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~   95 (125)
                      +..+..++.+...++
T Consensus       126 ~~~~~~~~~~~~~l~  140 (144)
T PRK15359        126 ASWSEIRQNAQIMVD  140 (144)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999988888776554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.43  E-value=1.1e-12  Score=75.76  Aligned_cols=65  Identities=23%  Similarity=0.351  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182           10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +.+|..+++.|+|++|+..|++++..+|.++.+++.+|.++..+|++++|+..       |+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAY-------YERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHH-------HHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999       999999999975

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.41  E-value=3e-12  Score=96.82  Aligned_cols=89  Identities=27%  Similarity=0.420  Sum_probs=84.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.+|..+|++++|+.++++++.++|.++.+|+++|.++..+|+|++|+..       |+++++++|++.
T Consensus        32 ~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~-------~~~al~l~P~~~  104 (356)
T PLN03088         32 DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA-------LEKGASLAPGDS  104 (356)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHhCCCCH
Confidence            4667889999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEK   97 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~   97 (125)
                      .+..++..+...+...
T Consensus       105 ~~~~~l~~~~~kl~~~  120 (356)
T PLN03088        105 RFTKLIKECDEKIAEE  120 (356)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998887543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.40  E-value=6.3e-12  Score=84.65  Aligned_cols=93  Identities=11%  Similarity=0.048  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +..-...+.+|..++..|++++|...|+.+..+||.++..|+++|.|+..+|+|++|+..       |.+++.++|+++.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~a-------Y~~A~~L~~ddp~  104 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYA-------YGRAAQIKIDAPQ  104 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCCch
Confidence            344567788999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +....+.++-.+++...+.+
T Consensus       105 ~~~~ag~c~L~lG~~~~A~~  124 (157)
T PRK15363        105 APWAAAECYLACDNVCYAIK  124 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            99999999988887766654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=4.3e-12  Score=98.23  Aligned_cols=86  Identities=31%  Similarity=0.583  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|.+++.|.|||.||.+++++..|+.+++++++++|++.++|++.|.++..+.+|+.|.+.       |..+++.+|++.
T Consensus       388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea-------y~eale~dp~~~  460 (539)
T KOG0548|consen  388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA-------YQEALELDPSNA  460 (539)
T ss_pred             CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCchhH
Confidence            5889999999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLA   94 (125)
Q Consensus        82 ~~~~~l~~~~~~~   94 (125)
                      ++...+.++..++
T Consensus       461 e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  461 EAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998865

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.36  E-value=2.4e-11  Score=79.19  Aligned_cols=94  Identities=15%  Similarity=0.139  Sum_probs=87.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|......+.+|.++...|++++|...+++++..+|.++.+++++|.++..+|++++|...       +++++.++|.+.
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~p~~~   85 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA-------YALAAALDPDDP   85 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCCCh
Confidence            5677788999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..+..++.++...++...+..
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~  106 (135)
T TIGR02552        86 RPYFHAAECLLALGEPESALK  106 (135)
T ss_pred             HHHHHHHHHHHHcCCHHHHHH
Confidence            999999999988887766654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.34  E-value=2e-11  Score=82.21  Aligned_cols=72  Identities=15%  Similarity=0.079  Sum_probs=67.6

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      ++|..+..|+|+|.|+..+|+|++|+..|.+++.++|++++++++.|.|+..+|+.+.|...       |+.++..-.+
T Consensus        64 ~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~a-------F~~Ai~~~~~  135 (157)
T PRK15363         64 YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKA-------LKAVVRICGE  135 (157)
T ss_pred             hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHhcc
Confidence            36788999999999999999999999999999999999999999999999999999999999       9888887633

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.33  E-value=2.3e-11  Score=79.25  Aligned_cols=86  Identities=20%  Similarity=0.206  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|.++|.++..+|+++.|+..+++++..+|+++..++++|.++...|++++|+..       |+++++++|++.
T Consensus        47 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~~~  119 (135)
T TIGR02552        47 DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKA-------LDLAIEICGENP  119 (135)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhccccc
Confidence            4667889999999999999999999999999999999999999999999999999999999       999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLA   94 (125)
Q Consensus        82 ~~~~~l~~~~~~~   94 (125)
                      .......++...+
T Consensus       120 ~~~~~~~~~~~~~  132 (135)
T TIGR02552       120 EYSELKERAEAML  132 (135)
T ss_pred             hHHHHHHHHHHHH
Confidence            8776666665443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.33  E-value=2.8e-11  Score=89.28  Aligned_cols=89  Identities=21%  Similarity=0.200  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ++..|+++|.+|...|++++|+.+|+++++++|+++.+|+++|.++..+|++++|...       |+++++++|++..++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~Al~l~P~~~~a~  135 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA-------FDSVLELDPTYNYAY  135 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCHHHH
Confidence            3566777777777777777777777777777777777777777777777777777777       777777777777777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEK  100 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~  100 (125)
                      ..++.+....++..++
T Consensus       136 ~~lg~~l~~~g~~~eA  151 (296)
T PRK11189        136 LNRGIALYYGGRYELA  151 (296)
T ss_pred             HHHHHHHHHCCCHHHH
Confidence            7766665555444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.26  E-value=7.1e-11  Score=82.70  Aligned_cols=94  Identities=12%  Similarity=0.073  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHchh--HHHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH-EKLEH--FEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|.++..|..+|.+|...|+++.|+..|+++++++|+++..+..+|.++ ...|+  +++|...       ++++++.+|
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~-------l~~al~~dP  141 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM-------IDKALALDA  141 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH-------HHHHHHhCC
Confidence            5778899999999999999999999999999999999999999999985 67787  5999999       999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++..++......++..++..
T Consensus       142 ~~~~al~~LA~~~~~~g~~~~Ai~  165 (198)
T PRK10370        142 NEVTALMLLASDAFMQADYAQAIE  165 (198)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999988888877766

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.24  E-value=7.6e-11  Score=69.32  Aligned_cols=70  Identities=26%  Similarity=0.442  Sum_probs=65.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182           13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR   89 (125)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~   89 (125)
                      ...|++.++|+.|+..+++++.++|+++..++.+|.++..+|++++|...       |+++++..|++..+......
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~-------l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALED-------LERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHH-------HHHHHHHCCCcHHHHHHHHh
Confidence            46788999999999999999999999999999999999999999999999       99999999999887766543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.23  E-value=1.1e-10  Score=85.30  Aligned_cols=91  Identities=24%  Similarity=0.298  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+.-+-+-|+-+++.++|.+|+..|++||.++|+++..|.+++.+|.++|+|+.|+++       ++.++.+||....++
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkD-------ce~Al~iDp~yskay  152 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKD-------CESALSIDPHYSKAY  152 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHH-------HHHHHhcChHHHHHH
Confidence            3444667788899999999999999999999999999999999999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++.++-.+++..++..
T Consensus       153 ~RLG~A~~~~gk~~~A~~  170 (304)
T KOG0553|consen  153 GRLGLAYLALGKYEEAIE  170 (304)
T ss_pred             HHHHHHHHccCcHHHHHH
Confidence            999999988877766654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.23  E-value=6.3e-11  Score=68.73  Aligned_cols=66  Identities=29%  Similarity=0.420  Sum_probs=60.6

Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182           17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR   89 (125)
Q Consensus        17 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~   89 (125)
                      ++.|+|++|+..|++++..+|++..+++.+|.++...|++++|...       +++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEEL-------LERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHH-------HHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999       99999999998877766654

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.23  E-value=7.4e-10  Score=65.35  Aligned_cols=87  Identities=32%  Similarity=0.388  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI   87 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l   87 (125)
                      +++++|.++...|++++|+..+++++...|.+..+++.+|.++...+++++|...       +++++...|.+..++..+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~   74 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALED-------YEKALELDPDNAKAYYNL   74 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhCCCcchhHHHHH
Confidence            5889999999999999999999999999999999999999999999999999999       999999999999888888


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           88 LRLQPLAEEKLEKM  101 (125)
Q Consensus        88 ~~~~~~~~~~~~~~  101 (125)
                      +.+....++.....
T Consensus        75 ~~~~~~~~~~~~a~   88 (100)
T cd00189          75 GLAYYKLGKYEEAL   88 (100)
T ss_pred             HHHHHHHHhHHHHH
Confidence            88887777655443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.1e-10  Score=90.44  Aligned_cols=84  Identities=33%  Similarity=0.481  Sum_probs=80.8

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|.+.+.|.||+.+|...|+|++|+.+..+.+.++|+++++|.++|.++..+|+|++|+..       |...++.+|+|
T Consensus        31 l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a-------y~~GL~~d~~n  103 (539)
T KOG0548|consen   31 LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA-------YSEGLEKDPSN  103 (539)
T ss_pred             cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH-------HHHHhhcCCch
Confidence            46778899999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHH
Q 033182           81 NQAKRTILRLQ   91 (125)
Q Consensus        81 ~~~~~~l~~~~   91 (125)
                      ......+..+.
T Consensus       104 ~~L~~gl~~a~  114 (539)
T KOG0548|consen  104 KQLKTGLAQAY  114 (539)
T ss_pred             HHHHHhHHHhh
Confidence            99999998887

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.20  E-value=2.3e-10  Score=90.71  Aligned_cols=91  Identities=21%  Similarity=0.203  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+...+|+|++|.++|++++|...|.+++...|..+.++.|+|.+|..+|++++|+.+       |+.++++.|...+
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~-------YkealrI~P~fAd  423 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC-------YKEALRIKPTFAD  423 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH-------HHHHHhcCchHHH
Confidence            445556666666666666666666666666666666666666666666666666666666       6666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~  100 (125)
                      ++.+++..++.+++-..+
T Consensus       424 a~~NmGnt~ke~g~v~~A  441 (966)
T KOG4626|consen  424 ALSNMGNTYKEMGDVSAA  441 (966)
T ss_pred             HHHhcchHHHHhhhHHHH
Confidence            666666666655554433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.19  E-value=2e-10  Score=84.72  Aligned_cols=74  Identities=23%  Similarity=0.269  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.++...|++++|+..|+++++++|++..+++++|.++...|++++|+..       |+++++++|+++
T Consensus        94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~-------~~~al~~~P~~~  166 (296)
T PRK11189         94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD-------LLAFYQDDPNDP  166 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCH
Confidence            5778899999999999999999999999999999999999999999999999999999999       999999999987


Q ss_pred             H
Q 033182           82 Q   82 (125)
Q Consensus        82 ~   82 (125)
                      .
T Consensus       167 ~  167 (296)
T PRK11189        167 Y  167 (296)
T ss_pred             H
Confidence            4

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.19  E-value=4.6e-10  Score=89.99  Aligned_cols=80  Identities=23%  Similarity=0.183  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      ..|.++|.++...|++++|+..+++++.++|+++.+++++|.++..+|++++|+..       |+++++++|++..++..
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~kal~l~P~~~~~~~~  438 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD-------YQKSIDLDPDFIFSHIQ  438 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCccCHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444       44444444444444444


Q ss_pred             HHHHHHH
Q 033182           87 ILRLQPL   93 (125)
Q Consensus        87 l~~~~~~   93 (125)
                      ++.++..
T Consensus       439 la~~~~~  445 (615)
T TIGR00990       439 LGVTQYK  445 (615)
T ss_pred             HHHHHHH
Confidence            4444433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.18  E-value=7.8e-10  Score=88.65  Aligned_cols=93  Identities=23%  Similarity=0.272  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |....+|.++|.++..+|++++|+..+++++.++|.+..+|+.+|.++..+|++++|+..       |+++++++|+++.
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~-------~~~al~~~p~~~~  400 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED-------FDKALKLNSEDPD  400 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCHH
Confidence            566788999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus       401 ~~~~lg~~~~~~g~~~~A~~  420 (615)
T TIGR00990       401 IYYHRAQLHFIKGEFAQAGK  420 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            99999999988877766554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.14  E-value=2.9e-10  Score=90.17  Aligned_cols=92  Identities=21%  Similarity=0.282  Sum_probs=75.8

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      |.|+-+.++.|+|+.|..+|+...|+.+|+++|..+|..++++.|+|.+|...|+..+|++.       |+.++.+.|+.
T Consensus       417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~s-------Y~~aLklkPDf  489 (966)
T KOG4626|consen  417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQS-------YRTALKLKPDF  489 (966)
T ss_pred             cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHH-------HHHHHccCCCC
Confidence            35666778888888888888888888888888888888888888888888888888888888       88888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLE   99 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~   99 (125)
                      +++.-++..+...+-++..
T Consensus       490 pdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  490 PDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             chhhhHHHHHHHHHhcccc
Confidence            8888888887777765543

>PRK12370 invasion protein regulator; Provisional

Probab=99.11  E-value=8.1e-10  Score=87.80  Aligned_cols=89  Identities=15%  Similarity=0.051  Sum_probs=77.0

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|..+.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|++++|+..       ++++++++|.+
T Consensus       333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~-------~~~Al~l~P~~  405 (553)
T PRK12370        333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT-------INECLKLDPTR  405 (553)
T ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCC
Confidence            35778889999999999999999999999999999999999999999999999999999999       99999999998


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEE   96 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~   96 (125)
                      ......+..+.-..++
T Consensus       406 ~~~~~~~~~~~~~~g~  421 (553)
T PRK12370        406 AAAGITKLWITYYHTG  421 (553)
T ss_pred             hhhHHHHHHHHHhccC
Confidence            7765544433333333

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.11  E-value=7.1e-10  Score=66.04  Aligned_cols=69  Identities=22%  Similarity=0.336  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----C---CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL----N---PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMK   71 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l----~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~   71 (125)
                      |....++.++|.+|..+|+|++|+..|++++.+    +   |..+.++.++|.++..+|++++|+.++++++.+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            677899999999999999999999999999966    2   23477999999999999999999999555555543

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.11  E-value=1.3e-09  Score=82.51  Aligned_cols=87  Identities=25%  Similarity=0.248  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL   88 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~   88 (125)
                      +...|...+..|+|..|+..|++++.++|+++.+++++|.++..+|++++|+..       ++++++++|++..++..++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~-------~~~Al~l~P~~~~a~~~lg   77 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVAD-------ANKAIELDPSLAKAYLRKG   77 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcCCHHHHHHHH
Confidence            567789999999999999999999999999999999999999999999999999       9999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           89 RLQPLAEEKLEKMK  102 (125)
Q Consensus        89 ~~~~~~~~~~~~~~  102 (125)
                      .++..+++..++..
T Consensus        78 ~~~~~lg~~~eA~~   91 (356)
T PLN03088         78 TACMKLEEYQTAKA   91 (356)
T ss_pred             HHHHHhCCHHHHHH
Confidence            99988887766655

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.09  E-value=1.6e-09  Score=76.90  Aligned_cols=91  Identities=23%  Similarity=0.284  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ...+...+|.-|++.|++..|...++++++.||++..+|..++..|.++|+.+.|-+.       |++|++++|++.++.
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~-------YrkAlsl~p~~GdVL  106 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADES-------YRKALSLAPNNGDVL  106 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHH-------HHHHHhcCCCccchh
Confidence            4567888999999999999999999999999999999999999999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      .+-+-.....+++.++..
T Consensus       107 NNYG~FLC~qg~~~eA~q  124 (250)
T COG3063         107 NNYGAFLCAQGRPEEAMQ  124 (250)
T ss_pred             hhhhHHHHhCCChHHHHH
Confidence            888888877776666554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=1.2e-09  Score=86.43  Aligned_cols=94  Identities=20%  Similarity=0.208  Sum_probs=82.4

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +++..-.+||.+|.+|.++++++.|+-+|.+|+.++|.+.......|..+.++|+.++|++.       |++|+.+||.+
T Consensus       484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~-------~~~A~~ld~kn  556 (638)
T KOG1126|consen  484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL-------YEKAIHLDPKN  556 (638)
T ss_pred             CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH-------HHHHHhcCCCC
Confidence            35677789999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~  101 (125)
                      +-..+..+.+.-.+.+..++-
T Consensus       557 ~l~~~~~~~il~~~~~~~eal  577 (638)
T KOG1126|consen  557 PLCKYHRASILFSLGRYVEAL  577 (638)
T ss_pred             chhHHHHHHHHHhhcchHHHH
Confidence            887777777766665554443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.09  E-value=4.7e-10  Score=86.31  Aligned_cols=68  Identities=22%  Similarity=0.258  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA---LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      +|..+..|+|+|.+|+++|+|++|+..|++++.++|++..+   |+++|.+|..+|++++|+.+       +++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~-------LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADC-------LRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHh
Confidence            46778999999999999999999999999999999999865   99999999999999999999       6666654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.08  E-value=3.7e-09  Score=72.80  Aligned_cols=92  Identities=18%  Similarity=0.220  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+..++++|.++...|++++|+..+++++..+|++..++..+|.++..+|++++|...       ++++++.+|.+..+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~-------~~~al~~~~~~~~~  101 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDS-------FRRALTLNPNNGDV  101 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCCCCHHH
Confidence            34678999999999999999999999999999999999999999999999999999999       99999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      ...++.++...++..++..
T Consensus       102 ~~~~~~~~~~~g~~~~A~~  120 (234)
T TIGR02521       102 LNNYGTFLCQQGKYEQAMQ  120 (234)
T ss_pred             HHHHHHHHHHcccHHHHHH
Confidence            8888888777666655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.07  E-value=3.2e-09  Score=72.44  Aligned_cols=87  Identities=16%  Similarity=0.178  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +....+++++|..+...|++++|+..|++++..+|+.   ..+++++|.++..+|++++|...       ++++++.+|+
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~  104 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY-------YHQALELNPK  104 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcc
Confidence            5677889999999999999999999999999987753   57999999999999999999999       9999999999


Q ss_pred             cHHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAEE   96 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~~   96 (125)
                      +...+..++.++..+++
T Consensus       105 ~~~~~~~lg~~~~~~g~  121 (172)
T PRK02603        105 QPSALNNIAVIYHKRGE  121 (172)
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            99988888888766544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.05  E-value=7.3e-09  Score=70.31  Aligned_cols=86  Identities=16%  Similarity=0.134  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      .....+|+++|.++..+|++++|+..|++++.+.|+   .+.+++++|.++..+|++++|+..       ++++++++|.
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~-------~~~Al~~~~~  104 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY-------YFQALERNPF  104 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcC
Confidence            345788999999999999999999999999999765   356999999999999999999999       9999999999


Q ss_pred             cHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAE   95 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~   95 (125)
                      +..++..++.++..++
T Consensus       105 ~~~~~~~la~i~~~~~  120 (168)
T CHL00033        105 LPQALNNMAVICHYRG  120 (168)
T ss_pred             cHHHHHHHHHHHHHhh
Confidence            9999888888887444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.04  E-value=3.4e-09  Score=88.99  Aligned_cols=93  Identities=11%  Similarity=0.060  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|. +.++.++|.++.+.|++++|+..+++++.++|+++.++.++|.++...|++++|+..       |+++++++|+++
T Consensus       606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~-------l~~AL~l~P~~~  677 (987)
T PRK09782        606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM-------LERAHKGLPDDP  677 (987)
T ss_pred             CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCH
Confidence            353 678889999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus       678 ~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        678 ALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHH
Confidence            999999988888777665554

>PRK12370 invasion protein regulator; Provisional

Probab=99.04  E-value=2.6e-09  Score=84.96  Aligned_cols=94  Identities=14%  Similarity=0.030  Sum_probs=84.2

Q ss_pred             hhHHHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLG---------KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   72 (125)
                      +|..+.+|.++|.+|...+         ++++|+..++++++++|+++.++..+|.++...|++++|+..       |++
T Consensus       291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~  363 (553)
T PRK12370        291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLL-------FKQ  363 (553)
T ss_pred             CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHH
Confidence            5677888999999887543         489999999999999999999999999999999999999999       999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           73 ILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        73 a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +++++|++..++..++.++...++..++..
T Consensus       364 Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~  393 (553)
T PRK12370        364 ANLLSPISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999888877665544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.03  E-value=7e-09  Score=65.47  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--   80 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--   80 (125)
                      ...++..|..+.+.|++++|+..|.+++..+|++   ..+++.+|.++...|+++.|+..       |+.++...|++  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~p~~~~   74 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKA-------FLAVVKKYPKSPK   74 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHH-------HHHHHHHCCCCCc
Confidence            3568999999999999999999999999999876   57999999999999999999999       99999998885  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 -NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 -~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                       ..++..++.+....++......
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~A~~   97 (119)
T TIGR02795        75 APDALLKLGMSLQELGDKEKAKA   97 (119)
T ss_pred             ccHHHHHHHHHHHHhCChHHHHH
Confidence             5678888888877766555444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=6e-09  Score=80.25  Aligned_cols=95  Identities=20%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      |+|.+-.+|+.+|.+|--++-..=|+-.|.+|+.+.|.+++.|-.+|.||.++++.++|+.+       |++++...-.+
T Consensus       393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC-------ykrai~~~dte  465 (559)
T KOG1155|consen  393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC-------YKRAILLGDTE  465 (559)
T ss_pred             cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH-------HHHHHhccccc
Confidence            34555556666666666666655566666666666666666666666666666666666666       66666665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++..|+++++.+++..++..
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHH
Confidence            5666666666666655544433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=2.5e-09  Score=81.25  Aligned_cols=90  Identities=30%  Similarity=0.547  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+.+|.||+.+..+.|+..+|+.+++.++.+||.+.++++++|.|+..+++|++|+++       |+.+.+.+.+ .+.
T Consensus       285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d-------~~~a~q~~~s-~e~  356 (486)
T KOG0550|consen  285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED-------YEKAMQLEKD-CEI  356 (486)
T ss_pred             hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhccc-cch
Confidence            46788999999999999999999999999999999999999999999999999999999       9999998877 777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~  101 (125)
                      ...+.+....++......
T Consensus       357 r~~l~~A~~aLkkSkRkd  374 (486)
T KOG0550|consen  357 RRTLREAQLALKKSKRKD  374 (486)
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            777877777776554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=9.7e-09  Score=79.12  Aligned_cols=95  Identities=16%  Similarity=0.165  Sum_probs=90.2

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +||.-..+|.-+|.-|+++.+-..|+..|++|+.++|.+.++||.+|++|.-++-..-|+-+       |++|.++-|.+
T Consensus       359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyY-------fqkA~~~kPnD  431 (559)
T KOG1155|consen  359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYY-------FQKALELKPND  431 (559)
T ss_pred             cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHH-------HHHHHhcCCCc
Confidence            46778889999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .-.+..|+.|+.++.+..++.+
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHH
Confidence            9999999999999998887776

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=1.2e-08  Score=79.16  Aligned_cols=93  Identities=24%  Similarity=0.253  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |.....|..||.+|.+.++-++...+|.++..+||.++..||.+|+.+.-+++|++|+.+       |++++.++|.+.-
T Consensus       357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD-------F~Kai~L~pe~~~  429 (606)
T KOG0547|consen  357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD-------FQKAISLDPENAY  429 (606)
T ss_pred             cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH-------HHHHhhcChhhhH
Confidence            334455778888888888888888888888888888888888888888888888888888       8888888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..+.-+.-+.....+.++
T Consensus       430 ~~iQl~~a~Yr~~k~~~~m~  449 (606)
T KOG0547|consen  430 AYIQLCCALYRQHKIAESMK  449 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77666666555555444444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.97  E-value=6.7e-09  Score=72.72  Aligned_cols=83  Identities=14%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             ChhHHHHHHHHHHHHH-HHhcC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            1 MAELRSICHSNRGICF-LKLGK--FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      ++|.++.++.++|.++ ...|+  +++|...++++++++|+++.+++++|.++...|+|++|+..       |+++++++
T Consensus       102 l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~-------~~~aL~l~  174 (198)
T PRK10370        102 LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL-------WQKVLDLN  174 (198)
T ss_pred             hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhC
Confidence            3577889999999975 67787  59999999999999999999999999999999999999999       99999999


Q ss_pred             CCcHHHHHHHHHH
Q 033182           78 PSNNQAKRTILRL   90 (125)
Q Consensus        78 p~~~~~~~~l~~~   90 (125)
                      |.+.+-...+.++
T Consensus       175 ~~~~~r~~~i~~i  187 (198)
T PRK10370        175 SPRVNRTQLVESI  187 (198)
T ss_pred             CCCccHHHHHHHH
Confidence            8766544444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=6.2e-09  Score=80.65  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=87.7

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|.++.+|+.||..++-+++|++|+.+|++++.++|+++-++..++.+.+++++++++...       |+.+.+.-|+.
T Consensus       389 ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~-------Fee~kkkFP~~  461 (606)
T KOG0547|consen  389 LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKT-------FEEAKKKFPNC  461 (606)
T ss_pred             cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhCCCC
Confidence            57889999999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++++..-+.+.-..++...+.+
T Consensus       462 ~Evy~~fAeiLtDqqqFd~A~k  483 (606)
T KOG0547|consen  462 PEVYNLFAEILTDQQQFDKAVK  483 (606)
T ss_pred             chHHHHHHHHHhhHHhHHHHHH
Confidence            9999888888776666666555

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.96  E-value=2.8e-08  Score=68.38  Aligned_cols=84  Identities=20%  Similarity=0.291  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELN--PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..++.++|.++...|++++|+..+++++...  |.....++++|.++...|++++|...       +.++++.+|++..+
T Consensus        99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~~~~~~~~~  171 (234)
T TIGR02521        99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY-------LTRALQIDPQRPES  171 (234)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcCChHH
Confidence            3444555555555555555555555554432  23344445555555555555555555       55555555554444


Q ss_pred             HHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEE   96 (125)
Q Consensus        84 ~~~l~~~~~~~~~   96 (125)
                      +..++.++...++
T Consensus       172 ~~~la~~~~~~~~  184 (234)
T TIGR02521       172 LLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHHHHHcCC
Confidence            4444444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.95  E-value=1.1e-08  Score=85.98  Aligned_cols=92  Identities=9%  Similarity=-0.017  Sum_probs=84.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.++.++|.++...|++++|+..++++++++|+++.+++++|.++..+|++++|...       |+++++++|++.
T Consensus       639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~-------l~~Al~l~P~~a  711 (987)
T PRK09782        639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY-------ARLVIDDIDNQA  711 (987)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCc
Confidence            5778899999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~  100 (125)
                      .+....+.+..+.......
T Consensus       712 ~i~~~~g~~~~~~~~~~~a  730 (987)
T PRK09782        712 LITPLTPEQNQQRFNFRRL  730 (987)
T ss_pred             hhhhhhhHHHHHHHHHHHH
Confidence            9998888877666544433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.93  E-value=3.6e-09  Score=64.01  Aligned_cols=57  Identities=33%  Similarity=0.452  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      +..+++++|.|++++|+|++|+..+++ ...+|.++..++.+|.|+..+|+|++|+..
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            677899999999999999999999999 889999999999999999999999999999

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.92  E-value=2.5e-08  Score=81.22  Aligned_cols=93  Identities=9%  Similarity=-0.054  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .|....++.+++.+..+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|...       |++++..+|++.
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~-------y~~~~~~~p~~~  188 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC-------FERLSRQHPEFE  188 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH-------HHHHHhcCCCcH
Confidence            3556667777777777777777777777777777777777777777777777777777777       777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~  101 (125)
                      .++..++.+.+..++..++.
T Consensus       189 ~~~~~~a~~l~~~G~~~~A~  208 (694)
T PRK15179        189 NGYVGWAQSLTRRGALWRAR  208 (694)
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            77777777777666554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.91  E-value=1.2e-08  Score=82.67  Aligned_cols=93  Identities=15%  Similarity=0.155  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEE----SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      |....++.++|.++...|++++    |+..|++++.++|+++.++..+|.++..+|++++|+..       ++++++++|
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~-------l~~al~l~P  315 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPL-------LQQSLATHP  315 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCC
Confidence            4556778888999999998875    78889999999999999999999999999999999998       888888899


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +++.+...++.++...++..++..
T Consensus       316 ~~~~a~~~La~~l~~~G~~~eA~~  339 (656)
T PRK15174        316 DLPYVRAMYARALRQVGQYTAASD  339 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHH
Confidence            998888888888877776665544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.91  E-value=2.9e-08  Score=67.34  Aligned_cols=77  Identities=25%  Similarity=0.193  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-------HchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE-------KLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      .+.+|.++|.++...|++++|+..+++++.++|.+...+.++|.++.       .+|+++.|...+..+..++++++..+
T Consensus        71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~  150 (168)
T CHL00033         71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA  150 (168)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence            45689999999999999999999999999999999999999999999       88999999999999999999999999


Q ss_pred             CCcH
Q 033182           78 PSNN   81 (125)
Q Consensus        78 p~~~   81 (125)
                      |.+.
T Consensus       151 p~~~  154 (168)
T CHL00033        151 PGNY  154 (168)
T ss_pred             cccH
Confidence            9654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.90  E-value=3.6e-08  Score=80.32  Aligned_cols=93  Identities=8%  Similarity=-0.049  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +..+.++.++|.+..+.|.+++|...+++++.+.|++..++.+++.++.+++++++|+..       +++++..+|++..
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~-------~~~~l~~~p~~~~  155 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAE-------IELYFSGGSSSAR  155 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHH-------HHHHhhcCCCCHH
Confidence            345889999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +...++.+..++++..++..
T Consensus       156 ~~~~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179        156 EILLEAKSWDEIGQSEQADA  175 (694)
T ss_pred             HHHHHHHHHHHhcchHHHHH
Confidence            99999999999998877765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.89  E-value=2.1e-08  Score=63.20  Aligned_cols=74  Identities=20%  Similarity=0.288  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ..+++.+|.++.+.|+++.|+..+++++..+|++   +.+++.+|.++..+|++++|...       ++++++..|++..
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~~~~~~p~~~~  111 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT-------LQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH-------HHHHHHHCcCChh
Confidence            5688999999999999999999999999998875   68899999999999999999999       9999999999877


Q ss_pred             HHHH
Q 033182           83 AKRT   86 (125)
Q Consensus        83 ~~~~   86 (125)
                      +...
T Consensus       112 ~~~~  115 (119)
T TIGR02795       112 AKLA  115 (119)
T ss_pred             HHHH
Confidence            6544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.89  E-value=6.4e-08  Score=65.70  Aligned_cols=92  Identities=9%  Similarity=-0.078  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..-...+..|.-+++.|++++|...|.-+..+||.+++.++.+|.|+..+++|+.|++.       |..+.-++++++..
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~-------Y~~A~~l~~~dp~p  107 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDL-------YAVAFTLLKNDYRP  107 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHcccCCCCc
Confidence            33455677777788888888888888888888888888888888888888888888888       88888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      .+..+.++..+++...+..
T Consensus       108 ~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             cchHHHHHHHhCCHHHHHH
Confidence            8888888888777766655

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.88  E-value=6.9e-09  Score=77.86  Aligned_cols=84  Identities=29%  Similarity=0.511  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .|++++.+.||+.+|+++.+|..|..+|+.++.+|..+.++|.++|.+...+|+.++|..+       ++.+++++|.+.
T Consensus       127 ~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD-------~E~vL~LEP~~~  199 (536)
T KOG4648|consen  127 YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKD-------CETVLALEPKNI  199 (536)
T ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHh-------HHHHHhhCcccH
Confidence            4678888999999999999999999999999999999999999999999999999999999       999999999988


Q ss_pred             HHHHHHHHHHH
Q 033182           82 QAKRTILRLQP   92 (125)
Q Consensus        82 ~~~~~l~~~~~   92 (125)
                      +....++.+..
T Consensus       200 ELkK~~a~i~S  210 (536)
T KOG4648|consen  200 ELKKSLARINS  210 (536)
T ss_pred             HHHHHHHHhcc
Confidence            87777766654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.87  E-value=1.9e-08  Score=68.29  Aligned_cols=85  Identities=7%  Similarity=-0.006  Sum_probs=73.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ++.++..|.++|.|+..+++|++|+..|..+..++++++...+..|.|+..+|+.+.|...       |..++. .|.+.
T Consensus        67 d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~-------f~~a~~-~~~~~  138 (165)
T PRK15331         67 DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC-------FELVNE-RTEDE  138 (165)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH-------HHHHHh-CcchH
Confidence            5677889999999999999999999999999999999999999999999999999999999       988888 57766


Q ss_pred             HHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLA   94 (125)
Q Consensus        82 ~~~~~l~~~~~~~   94 (125)
                      .....-......+
T Consensus       139 ~l~~~A~~~L~~l  151 (165)
T PRK15331        139 SLRAKALVYLEAL  151 (165)
T ss_pred             HHHHHHHHHHHHH
Confidence            6554444443333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.85  E-value=9.6e-09  Score=62.13  Aligned_cols=77  Identities=32%  Similarity=0.378  Sum_probs=67.0

Q ss_pred             HhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182           18 KLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE   95 (125)
Q Consensus        18 ~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~   95 (125)
                      .+|+|+.|+..+++++..+|.  +...++.+|.|+..+|+|++|+..       +++ .+.+|.+......++.+.-.++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~-------~~~-~~~~~~~~~~~~l~a~~~~~l~   72 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIEL-------LQK-LKLDPSNPDIHYLLARCLLKLG   72 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHH-------HHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHH-------HHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence            368999999999999999995  577888899999999999999999       988 8889999899999999998888


Q ss_pred             HHHHHHH
Q 033182           96 EKLEKMK  102 (125)
Q Consensus        96 ~~~~~~~  102 (125)
                      +..++.+
T Consensus        73 ~y~eAi~   79 (84)
T PF12895_consen   73 KYEEAIK   79 (84)
T ss_dssp             -HHHHHH
T ss_pred             CHHHHHH
Confidence            8876654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=3.1e-09  Score=84.20  Aligned_cols=94  Identities=23%  Similarity=0.260  Sum_probs=75.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------------------------------hHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----------------------------------MKALIRRA   47 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----------------------------------~~~~~~~~   47 (125)
                      +|..+..|+.+|+||--+++++.|++.|++++++||++                                  ..+||.+|
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG  496 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG  496 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence            46778889999999999999999999999988888743                                  46888888


Q ss_pred             HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           48 EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        48 ~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .+|+++++++.|.-.       |++|+++||.+..+..-++.++.+.++.+.+-.
T Consensus       497 ~vy~Kqek~e~Ae~~-------fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~  544 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFH-------FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ  544 (638)
T ss_pred             hheeccchhhHHHHH-------HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH
Confidence            888888888888888       888888888888888888877777776655443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.85  E-value=6.9e-08  Score=68.40  Aligned_cols=84  Identities=20%  Similarity=0.090  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +..+..++++|..++..|+|+.|+..+++++..+|+++   .+++.+|.++...|++++|+..       ++++++..|+
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~-------~~~~l~~~p~  102 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAA-------ADRFIRLHPN  102 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHCcC
Confidence            45677899999999999999999999999999999875   6889999999999999999999       9999999998


Q ss_pred             cHH---HHHHHHHHHHH
Q 033182           80 NNQ---AKRTILRLQPL   93 (125)
Q Consensus        80 ~~~---~~~~l~~~~~~   93 (125)
                      ++.   ++..++.++..
T Consensus       103 ~~~~~~a~~~~g~~~~~  119 (235)
T TIGR03302       103 HPDADYAYYLRGLSNYN  119 (235)
T ss_pred             CCchHHHHHHHHHHHHH
Confidence            776   46666665543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.85  E-value=3e-09  Score=81.93  Aligned_cols=90  Identities=30%  Similarity=0.530  Sum_probs=84.3

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|..+.+|.+|+.++++.++|..|+.++.++++++|+..++|+++|.+++.++.+.+|...       |+....+.|+.
T Consensus        33 ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~-------l~~~~~l~Pnd  105 (476)
T KOG0376|consen   33 LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD-------LEKVKKLAPND  105 (476)
T ss_pred             cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH-------HHHhhhcCcCc
Confidence            35667788999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEK   97 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~   97 (125)
                      +.+...+.++.....+.
T Consensus       106 ~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen  106 PDATRKIDECNKIVSEE  122 (476)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998877754

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.84  E-value=3.4e-08  Score=80.06  Aligned_cols=94  Identities=12%  Similarity=0.031  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|....++.++|.++.+.|++++|+..+++++.++|+++.++.++|.++..+|++++|+..       |+++++.+|++.
T Consensus       280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~-------l~~al~~~P~~~  352 (656)
T PRK15174        280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE-------FVQLAREKGVTS  352 (656)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCccch
Confidence            4667789999999999999999999999999999999999999999999999999999999       999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .....++.+....++..++..
T Consensus       353 ~~~~~~a~al~~~G~~deA~~  373 (656)
T PRK15174        353 KWNRYAAAALLQAGKTSEAES  373 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHH
Confidence            766666666666665554443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=9.2e-08  Score=71.22  Aligned_cols=89  Identities=26%  Similarity=0.430  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHH---Hh----
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKI---LE----   75 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a---~~----   75 (125)
                      +.+.++|.||+.|..-.|+|..|+.++.+++.++|++.+++++-+.|+..+.++++|..+++-++.+...+   ++    
T Consensus       116 dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l  195 (390)
T KOG0551|consen  116 DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNL  195 (390)
T ss_pred             cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Confidence            46788999999999999999999999999999999999999999999999999999999955555554332   22    


Q ss_pred             hCCCcHHHHHHHHHHH
Q 033182           76 FDPSNNQAKRTILRLQ   91 (125)
Q Consensus        76 l~p~~~~~~~~l~~~~   91 (125)
                      ++|++.........+.
T Consensus       196 ~~k~~~~~L~~er~~r  211 (390)
T KOG0551|consen  196 IHKNDKLKLIEERDVR  211 (390)
T ss_pred             cCcchHHHHHHHHHHH
Confidence            2355555444444444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.82  E-value=1.6e-07  Score=67.70  Aligned_cols=92  Identities=21%  Similarity=0.216  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      .+..+....|...++.|+|.+|+..+.++..++|++.++|..+|.+|.+.|+++.|...       |.+++++.|+++.+
T Consensus        98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~a-------y~qAl~L~~~~p~~  170 (257)
T COG5010          98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRA-------YRQALELAPNEPSI  170 (257)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHH-------HHHHHHhccCCchh
Confidence            34445556888889999999999999999999999999999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..+++-.+..-++...+++
T Consensus       171 ~nNlgms~~L~gd~~~A~~  189 (257)
T COG5010         171 ANNLGMSLLLRGDLEDAET  189 (257)
T ss_pred             hhhHHHHHHHcCCHHHHHH
Confidence            9999888877776665555

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.82  E-value=5.1e-08  Score=57.26  Aligned_cols=70  Identities=37%  Similarity=0.511  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      |....++..+|.++...++++.|+..+++++...|.+...++.+|.++...|+++.|...       +.++++.+|+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~~~~~~~  100 (100)
T cd00189          31 PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEA-------YEKALELDPN  100 (100)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHH-------HHHHHccCCC
Confidence            344578999999999999999999999999999999999999999999999999999999       9999888774

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.80  E-value=1.2e-07  Score=61.51  Aligned_cols=89  Identities=22%  Similarity=0.176  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC---c
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS---N   80 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~---~   80 (125)
                      .++++++.++-..|+.++|+..|++++..++..   .+++..+|.++..+|++++|+..       ++.++.-.|+   +
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~-------L~~~~~~~p~~~~~   74 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALAL-------LEEALEEFPDDELN   74 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCcccc
Confidence            578999999999999999999999999987544   67999999999999999999999       9999998888   7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..+...+..+....++.+++..
T Consensus        75 ~~l~~f~Al~L~~~gr~~eAl~   96 (120)
T PF12688_consen   75 AALRVFLALALYNLGRPKEALE   96 (120)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHH
Confidence            7777777766666666655443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.79  E-value=1.4e-07  Score=64.31  Aligned_cols=76  Identities=28%  Similarity=0.274  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-------HHHHHHhHHHHHHHHHHHHhhCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-------FEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ..++.++|.++...|++++|+..+++++..+|.+..++..+|.++..+|+       ++.|...++.++.+++++++++|
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence            56899999999999999999999999999999999999999999988665       67777777888888999999999


Q ss_pred             CcH
Q 033182           79 SNN   81 (125)
Q Consensus        79 ~~~   81 (125)
                      ++-
T Consensus       152 ~~~  154 (172)
T PRK02603        152 NNY  154 (172)
T ss_pred             hhH
Confidence            873

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.78  E-value=6.9e-08  Score=70.31  Aligned_cols=92  Identities=17%  Similarity=0.174  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+.+|..+|.++.+.|++++|+..+++++.++|++..+...++.++...|+++++...       ++...+..|+++..
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~-------l~~~~~~~~~~~~~  216 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA-------LKRLLKAAPDDPDL  216 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH-------HHHHHHH-HTSCCH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH-------HHHHHHHCcCHHHH
Confidence            45677888888888888888888888888888888888877777777777777777766       66666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..++.++..+++...+..
T Consensus       217 ~~~la~~~~~lg~~~~Al~  235 (280)
T PF13429_consen  217 WDALAAAYLQLGRYEEALE  235 (280)
T ss_dssp             CHHHHHHHHHHT-HHHHHH
T ss_pred             HHHHHHHhccccccccccc
Confidence            6666666666666555444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=2e-08  Score=78.70  Aligned_cols=92  Identities=17%  Similarity=0.192  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      .++.+...+|..|.-.++|+.|+.+|+.|+..+|++...|.++|.++---.+.++|+..       |.+|+++.|+..-+
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsA-------Y~rALqLqP~yVR~  500 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISA-------YNRALQLQPGYVRV  500 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHH-------HHHHHhcCCCeeee
Confidence            46788889999999999999999999999999999999999999999999999999999       99999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      +.+++-...-++..+++.+
T Consensus       501 RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  501 RYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             ehhhhhhhhhhhhHHHHHH
Confidence            8888888888887776665

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.78  E-value=4.7e-08  Score=69.53  Aligned_cols=91  Identities=20%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS--   79 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--   79 (125)
                      +|....+|.-++..|.+.|+.+.|.+.|++++.++|++...+.|.|-.++.+|+|++|..+       |++|+. +|.  
T Consensus        65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~-------F~~Al~-~P~Y~  136 (250)
T COG3063          65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ-------FERALA-DPAYG  136 (250)
T ss_pred             CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH-------HHHHHh-CCCCC
Confidence            4666677888888888888888888888888888888888888888888888888888888       777766 343  


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHH
Q 033182           80 -NNQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        80 -~~~~~~~l~~~~~~~~~~~~~  100 (125)
                       ...++.+++-|..+.++...+
T Consensus       137 ~~s~t~eN~G~Cal~~gq~~~A  158 (250)
T COG3063         137 EPSDTLENLGLCALKAGQFDQA  158 (250)
T ss_pred             CcchhhhhhHHHHhhcCCchhH
Confidence             344566666665555444433

>PLN02789 farnesyltranstransferase

Probab=98.75  E-value=2.1e-07  Score=69.66  Aligned_cols=92  Identities=20%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH--HHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF--EEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|...++|..|+.++..+| ++++++..++++++.+|++..+|++++.++.++|..  ++++..       +.++++++|
T Consensus        67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~-------~~kal~~dp  139 (320)
T PLN02789         67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF-------TRKILSLDA  139 (320)
T ss_pred             CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH-------HHHHHHhCc
Confidence            5667777888888777777 467788878888888888877888887777777763  556666       777777777


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~  100 (125)
                      .|-.++...+-+...++...++
T Consensus       140 kNy~AW~~R~w~l~~l~~~~ee  161 (320)
T PLN02789        140 KNYHAWSHRQWVLRTLGGWEDE  161 (320)
T ss_pred             ccHHHHHHHHHHHHHhhhHHHH
Confidence            7777777777777666655443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=4.8e-08  Score=69.92  Aligned_cols=90  Identities=21%  Similarity=0.360  Sum_probs=72.9

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|+-++.|-|++.||+++++|+.+..++.++++++|+-+++++.+|.+......|++|+..+|+++.+++.. .++| -
T Consensus        39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~-~~~~-~  116 (284)
T KOG4642|consen   39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ-PFTF-G  116 (284)
T ss_pred             cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC-CCCC-c
Confidence            4678889999999999999999999999999999999999999999999999999999999966666665322 1222 2


Q ss_pred             HHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQP   92 (125)
Q Consensus        81 ~~~~~~l~~~~~   92 (125)
                      .++...|..+..
T Consensus       117 ~di~~~L~~ak~  128 (284)
T KOG4642|consen  117 DDIPKALRDAKK  128 (284)
T ss_pred             chHHHHHHHHHh
Confidence            345555555543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.74  E-value=9.7e-08  Score=77.06  Aligned_cols=95  Identities=20%  Similarity=0.173  Sum_probs=88.1

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHH--hHHHHHHHHHHHHhhCC
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA--GIQDLMIVMKKILEFDP   78 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~~~~~~~a~~l~p   78 (125)
                      +.+..+..|+-+|.++...|++++|...|..++.+||+++.+...+|.++...|+-.-|..  .       +..+++++|
T Consensus       679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~-------L~dalr~dp  751 (799)
T KOG4162|consen  679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSL-------LSDALRLDP  751 (799)
T ss_pred             cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHH-------HHHHHhhCC
Confidence            3467788999999999999999999999999999999999999999999999999888888  8       999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .|.++|+.++.+.++.++..++..
T Consensus       752 ~n~eaW~~LG~v~k~~Gd~~~Aae  775 (799)
T KOG4162|consen  752 LNHEAWYYLGEVFKKLGDSKQAAE  775 (799)
T ss_pred             CCHHHHHHHHHHHHHccchHHHHH
Confidence            999999999999999998776554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=2e-08  Score=78.78  Aligned_cols=71  Identities=18%  Similarity=0.271  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +|.+...|..+|..+..-++.++|+..|.+|+++-|.+.+++||+|.+++.+|-|++|+.+       |-.|+.+.+.
T Consensus       460 ~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h-------lL~AL~mq~k  530 (579)
T KOG1125|consen  460 KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH-------LLEALSMQRK  530 (579)
T ss_pred             CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH-------HHHHHHhhhc
Confidence            5788999999999999999999999999999999999999999999999999999999999       8888888765

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.74  E-value=3.7e-07  Score=62.79  Aligned_cols=93  Identities=24%  Similarity=0.297  Sum_probs=71.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH----HHHHHhHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKF----------EESIKECTKALELNPTYMKALIRRAEAHEKLEHF----EEAIAGIQDLM   67 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~   67 (125)
                      +|.++..+++.|.++..+.++          ++|+.-|+.++.++|+...+++.+|.+|+.++.+    .+|...++++.
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~  100 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT  100 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            688999999999999887544          6688889999999999999999999999988874    34555567777


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182           68 IVMKKILEFDPSNNQAKRTILRLQPLA   94 (125)
Q Consensus        68 ~~~~~a~~l~p~~~~~~~~l~~~~~~~   94 (125)
                      .-|+++...+|++...+..|....++-
T Consensus       101 ~~FqkAv~~~P~ne~Y~ksLe~~~kap  127 (186)
T PF06552_consen  101 EYFQKAVDEDPNNELYRKSLEMAAKAP  127 (186)
T ss_dssp             HHHHHHHHH-TT-HHHHHHHHHHHTHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHhhH
Confidence            779999999999988877777665433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.72  E-value=2.1e-07  Score=79.57  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH--------------HHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK--------------ALIRRAEAHEKLEHFEEAIAGIQDLM   67 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~~   67 (125)
                      +|.++.++..+|.++.++|++++|+..|++++.++|++..              .....|.++...|++++|+..     
T Consensus       299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~-----  373 (1157)
T PRK11447        299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL-----  373 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH-----
Confidence            4566778888888888888888888888888888887642              123457778888888888888     


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           68 IVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        68 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                        |+++++++|++..++..++.++...++..++..
T Consensus       374 --~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~  406 (1157)
T PRK11447        374 --YQQARQVDNTDSYAVLGLGDVAMARKDYAAAER  406 (1157)
T ss_pred             --HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence              999999999999999999999888877766655

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.71  E-value=3.2e-07  Score=75.61  Aligned_cols=92  Identities=14%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |....++.++|.++...|++++|+..+++++.++|.++.+++.++.++...|++++|+..       ++++++.+|++..
T Consensus        46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~-------l~~~l~~~P~~~~  118 (765)
T PRK10049         46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK-------AKQLVSGAPDKAN  118 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCHH
Confidence            344556777888888888888888888888888888888888888888888888888888       8888888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                       +..++.+....++..++..
T Consensus       119 -~~~la~~l~~~g~~~~Al~  137 (765)
T PRK10049        119 -LLALAYVYKRAGRHWDELR  137 (765)
T ss_pred             -HHHHHHHHHHCCCHHHHHH
Confidence             7777777766665544443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.71  E-value=1.6e-07  Score=76.86  Aligned_cols=92  Identities=17%  Similarity=0.166  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      -...++.+++.+++..|+|.+|++.+..+....+ .+.-.|+++|.||..+|.+++|+..       |+.++.++|++.+
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~-------y~kvl~~~p~~~D  484 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF-------YEKVLILAPDNLD  484 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCchh
Confidence            4577899999999999999999999999888876 4577999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..|++++..++.+.++..
T Consensus       485 ~Ri~Lasl~~~~g~~EkalE  504 (895)
T KOG2076|consen  485 ARITLASLYQQLGNHEKALE  504 (895)
T ss_pred             hhhhHHHHHHhcCCHHHHHH
Confidence            99999999999988775543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=3e-07  Score=66.29  Aligned_cols=90  Identities=31%  Similarity=0.430  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +.-+...+.|.+.|+...|+|-+++..++.++..+|+|.++||++|.++...=+..+|..+       |..+++++|.-.
T Consensus       226 dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D-------~~~vL~ldpsla  298 (329)
T KOG0545|consen  226 DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKAD-------LQKVLELDPSLA  298 (329)
T ss_pred             HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHH-------HHHHHhcChhhH
Confidence            3456778999999999999999999999999999999999999999999999999999999       999999999865


Q ss_pred             H-HHHHHHHHHHHHHHHH
Q 033182           82 Q-AKRTILRLQPLAEEKL   98 (125)
Q Consensus        82 ~-~~~~l~~~~~~~~~~~   98 (125)
                      . +...+..+..++.+.+
T Consensus       299 svVsrElr~le~r~~ek~  316 (329)
T KOG0545|consen  299 SVVSRELRLLENRMAEKQ  316 (329)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            5 3444444444444433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3.2e-07  Score=67.33  Aligned_cols=101  Identities=19%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH---HHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF---EEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|.++.-|.-+|.+|+.+|++..|+..|.+++++.|+++..+..+|.+++.+..-   .++...       +++++.+||
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l-------l~~al~~D~  224 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL-------LRQALALDP  224 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH-------HHHHHhcCC
Confidence            5788889999999999999999999999999999999999999999999976543   456666       999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 033182           79 SNNQAKRTILRLQPLAEEKLEKMK--EEMIGKL  109 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~  109 (125)
                      ++..+.+.|+...-..++..++..  ..+++.+
T Consensus       225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            999999999998887777776665  4444444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.69  E-value=2.1e-07  Score=75.37  Aligned_cols=91  Identities=23%  Similarity=0.303  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |.....|..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|...       |+++++.+|++..
T Consensus       598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~  670 (899)
T TIGR02917       598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS-------LKRALELKPDNTE  670 (899)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCCHH
Confidence            345667888888888888888888888888888888888888888888888888888888       8888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~  100 (125)
                      ++..+..+....++..++
T Consensus       671 ~~~~l~~~~~~~~~~~~A  688 (899)
T TIGR02917       671 AQIGLAQLLLAAKRTESA  688 (899)
T ss_pred             HHHHHHHHHHHcCCHHHH
Confidence            777777776665555444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.68  E-value=5.7e-07  Score=72.82  Aligned_cols=90  Identities=24%  Similarity=0.218  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|...       ++++++.+|.+..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~  195 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL-------IDEVLTADPGNVDA  195 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCChHH
Confidence            34556677777777777777777777777777777777777777777777777777777       66666667776666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEK  100 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~  100 (125)
                      +..++.+....++...+
T Consensus       196 ~~~~~~~~~~~g~~~~A  212 (899)
T TIGR02917       196 LLLKGDLLLSLGNIELA  212 (899)
T ss_pred             HHHHHHHHHhcCCHHHH
Confidence            66666665555444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.67  E-value=1.7e-07  Score=80.11  Aligned_cols=93  Identities=10%  Similarity=0.033  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+..+..+|.++.+.|++++|+..|++++..+|+++.++++++.++...|++++|+..       ++++++.+|++..
T Consensus       600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~-------l~~ll~~~p~~~~  672 (1157)
T PRK11447        600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ-------LAKLPATANDSLN  672 (1157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHhccCCCChH
Confidence            445667899999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +...++.+....++..++..
T Consensus       673 ~~~~la~~~~~~g~~~eA~~  692 (1157)
T PRK11447        673 TQRRVALAWAALGDTAAAQR  692 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHH
Confidence            88888888877666655544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.67  E-value=8e-07  Score=62.92  Aligned_cols=76  Identities=16%  Similarity=0.240  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHc--------hhHHHHHHhHHHHHHHHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMK---ALIRRAEAHEKL--------EHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      ..+++.+|.++...|++++|+..++++++.+|+++.   +++.+|.++...        |+++.|+..       +++++
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~-------~~~~~  142 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEA-------FQELI  142 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHH-------HHHHH
Confidence            467899999999999999999999999999998776   799999999987        899999999       99999


Q ss_pred             hhCCCcHHHHHHHH
Q 033182           75 EFDPSNNQAKRTIL   88 (125)
Q Consensus        75 ~l~p~~~~~~~~l~   88 (125)
                      ..+|++..+...+.
T Consensus       143 ~~~p~~~~~~~a~~  156 (235)
T TIGR03302       143 RRYPNSEYAPDAKK  156 (235)
T ss_pred             HHCCCChhHHHHHH
Confidence            99999877654443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2.7e-07  Score=72.50  Aligned_cols=76  Identities=26%  Similarity=0.291  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI   87 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l   87 (125)
                      .+.|+|.++.+.+.|++|+..+++++.+.|.++..+...|.+|..+|+++.|++.       |.+++-++|++..+...|
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~-------fhKaL~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH-------FHKALALKPDNIFISELL  529 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH-------HHHHHhcCCccHHHHHHH
Confidence            4889999999999999999999999999999999999999999999999999999       999999999998877777


Q ss_pred             HHH
Q 033182           88 LRL   90 (125)
Q Consensus        88 ~~~   90 (125)
                      ..+
T Consensus       530 ~~a  532 (611)
T KOG1173|consen  530 KLA  532 (611)
T ss_pred             HHH
Confidence            744

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.64  E-value=5.3e-07  Score=69.81  Aligned_cols=93  Identities=22%  Similarity=0.153  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |.++.++.-++..+++.|+..+|.+.+++++.++|..+..++++|.++.+.|++.+|+..       +.+.+.-+|+++.
T Consensus       337 P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~-------L~~~~~~~p~dp~  409 (484)
T COG4783         337 PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI-------LNRYLFNDPEDPN  409 (484)
T ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH-------HHHHhhcCCCCch
Confidence            567888999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .|..|+..+..+++..+...
T Consensus       410 ~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         410 GWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             HHHHHHHHHHHhCchHHHHH
Confidence            99999999998887765554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.64  E-value=1.4e-06  Score=63.57  Aligned_cols=89  Identities=9%  Similarity=0.023  Sum_probs=74.3

Q ss_pred             HHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--
Q 033182            7 ICHSNRGICF-LKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--   80 (125)
Q Consensus         7 ~~~~~~~~~~-~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--   80 (125)
                      ..+++.+..+ ++.|+|++|+..|+..+...|+.   +.+++.+|.+|...|++++|+..       |+++++..|++  
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~-------f~~vv~~yP~s~~  215 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYY-------FASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCCcc
Confidence            5677888876 56799999999999999999987   58999999999999999999999       99999888874  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 -NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 -~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                       ++++..++.++...++...+..
T Consensus       216 ~~dAl~klg~~~~~~g~~~~A~~  238 (263)
T PRK10803        216 AADAMFKVGVIMQDKGDTAKAKA  238 (263)
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHH
Confidence             6677777777766665555444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.64  E-value=4.6e-07  Score=68.29  Aligned_cols=84  Identities=15%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH-HHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN-QAKR   85 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~-~~~~   85 (125)
                      .++.++|..+.+.|++++|+..+++++..+|+...+++.+|.++...|++++|...       ++++++.+|.+. .+..
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~~~~~~p~~~~~~~~  253 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA-------LERVEEQDPEYLSEVLP  253 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHChhhHHHHHH
Confidence            35566777777777777777777777777777777777777777777777777777       666666666542 3344


Q ss_pred             HHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEK   97 (125)
Q Consensus        86 ~l~~~~~~~~~~   97 (125)
                      .+..++...++.
T Consensus       254 ~l~~~~~~~g~~  265 (389)
T PRK11788        254 KLMECYQALGDE  265 (389)
T ss_pred             HHHHHHHHcCCH
Confidence            444444444333

>PLN02789 farnesyltranstransferase

Probab=98.63  E-value=3.5e-07  Score=68.52  Aligned_cols=86  Identities=20%  Similarity=0.123  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            2 AELRSICHSNRGICFLKLGKF--EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +|....+|++|+.+..+.++.  ++++..+++++..||++..+|..++-++..+|.|++|++.       +.++++.+|.
T Consensus       102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~-------~~~~I~~d~~  174 (320)
T PLN02789        102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEY-------CHQLLEEDVR  174 (320)
T ss_pred             CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHCCC
Confidence            456677899999999999874  7789999999999999999999999999999999999999       9999999999


Q ss_pred             cHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLA   94 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~   94 (125)
                      |..++....-+....
T Consensus       175 N~sAW~~R~~vl~~~  189 (320)
T PLN02789        175 NNSAWNQRYFVITRS  189 (320)
T ss_pred             chhHHHHHHHHHHhc
Confidence            999998888775443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.63  E-value=7.8e-08  Score=70.03  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|.++.+...++..++..|+++++...++......|+++..+..+|.++..+|++++|+.+       |+++++.+|+++
T Consensus       176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~-------~~~~~~~~p~d~  248 (280)
T PF13429_consen  176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY-------LEKALKLNPDDP  248 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH-------HHHHHHHSTT-H
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc-------cccccccccccc
Confidence            5778889999999999999999999999998888899999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .+...++++....++..++..
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HHHHHHHHHHT----------
T ss_pred             ccccccccccccccccccccc
Confidence            999999999988887766544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.63  E-value=3e-07  Score=69.13  Aligned_cols=83  Identities=25%  Similarity=0.390  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|.+-.+++.||.+|..+|+-..|+.++++++++.|++.-+...+|.+++++|++++|.++       |..+++-+|++.
T Consensus        68 dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~D-------F~~vl~~~~s~~  140 (504)
T KOG0624|consen   68 DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEAD-------FDQVLQHEPSNG  140 (504)
T ss_pred             CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHH-------HHHHHhcCCCcc
Confidence            4666678889999999999999999999999999999999999999999999999999999       999999999765


Q ss_pred             HHHHHHHHHH
Q 033182           82 QAKRTILRLQ   91 (125)
Q Consensus        82 ~~~~~l~~~~   91 (125)
                      ......+++.
T Consensus       141 ~~~eaqskl~  150 (504)
T KOG0624|consen  141 LVLEAQSKLA  150 (504)
T ss_pred             hhHHHHHHHH
Confidence            5544444443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.63  E-value=1.5e-07  Score=70.77  Aligned_cols=84  Identities=24%  Similarity=0.284  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL   88 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~   88 (125)
                      .-.+|+.|+++|+|++|+.+|.+++..+|.|+..+.|++.+|.++..|..|..+       +..++.+|-....++.-..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~D-------C~~AiaLd~~Y~KAYSRR~  172 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEED-------CEAAIALDKLYVKAYSRRM  172 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHh-------HHHHHHhhHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999       9999999988777777666


Q ss_pred             HHHHHHHHHHH
Q 033182           89 RLQPLAEEKLE   99 (125)
Q Consensus        89 ~~~~~~~~~~~   99 (125)
                      .....++.-.+
T Consensus       173 ~AR~~Lg~~~E  183 (536)
T KOG4648|consen  173 QARESLGNNME  183 (536)
T ss_pred             HHHHHHhhHHH
Confidence            66666554433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.62  E-value=4.2e-07  Score=65.47  Aligned_cols=95  Identities=16%  Similarity=0.126  Sum_probs=88.4

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|.+..+|+.+|.+|.+.|++++|-..|.+++++.|..+....|+|..+.-.|+++.|...       +.++....+.+
T Consensus       129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l-------ll~a~l~~~ad  201 (257)
T COG5010         129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL-------LLPAYLSPAAD  201 (257)
T ss_pred             cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH-------HHHHHhCCCCc
Confidence            35788999999999999999999999999999999999999999999999999999999999       99999988889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..+..++..+....++..+++.
T Consensus       202 ~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         202 SRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             hHHHHHHHHHHhhcCChHHHHh
Confidence            9999999998888887776665

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.61  E-value=1.2e-06  Score=72.16  Aligned_cols=90  Identities=11%  Similarity=-0.113  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      ..++..++..+...|++++|+..+++++...|.++..+..+|.++...|++++|+..       ++++++++|++.....
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~-------l~~al~l~Pd~~~l~~  431 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENE-------LKKAEVLEPRNINLEV  431 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHhhCCCChHHHH
Confidence            457789999999999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKLEKMK  102 (125)
Q Consensus        86 ~l~~~~~~~~~~~~~~~  102 (125)
                      .++.+....++..+++.
T Consensus       432 ~~a~~al~~~~~~~A~~  448 (765)
T PRK10049        432 EQAWTALDLQEWRQMDV  448 (765)
T ss_pred             HHHHHHHHhCCHHHHHH
Confidence            99988888887776665

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.59  E-value=2.7e-07  Score=69.37  Aligned_cols=81  Identities=28%  Similarity=0.468  Sum_probs=73.3

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 033182           11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRL   90 (125)
Q Consensus        11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~   90 (125)
                      -++.|+..-+++.+|+..|.+++..+|+++.++.-++.+|+.-..|++|+..       |+.+.+.+|++..+...+...
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~d-------ye~A~e~n~sn~~~reGle~A  384 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHD-------YEKALELNESNTRAREGLERA  384 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHhcCcccHHHHHHHHHH
Confidence            4567888889999999999999999999999999999999999999999999       999999999999999999887


Q ss_pred             HHHHHHHH
Q 033182           91 QPLAEEKL   98 (125)
Q Consensus        91 ~~~~~~~~   98 (125)
                      .+..+...
T Consensus       385 krlkkqs~  392 (504)
T KOG0624|consen  385 KRLKKQSG  392 (504)
T ss_pred             HHHHHHhc
Confidence            76555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.58  E-value=1.6e-07  Score=50.14  Aligned_cols=43  Identities=21%  Similarity=0.231  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE   48 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~   48 (125)
                      +.+|..+|.+|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578999999999999999999999999999999999999885

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.58  E-value=1.3e-07  Score=47.45  Aligned_cols=34  Identities=32%  Similarity=0.586  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY   39 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~   39 (125)
                      +.+|+++|.+|..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.57  E-value=5.2e-07  Score=52.18  Aligned_cols=58  Identities=21%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH-HHHHHHH
Q 033182           38 TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE-EKLEKMK  102 (125)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~-~~~~~~~  102 (125)
                      .++..|+.+|.++...|+|++|+..       |+++++++|++..++..++.++...+ +..++..
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~-------~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~   59 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEY-------FEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE   59 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHH-------HHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH
Confidence            3678999999999999999999999       99999999999999999999998887 5655543

...

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.57  E-value=9.7e-07  Score=66.51  Aligned_cols=90  Identities=13%  Similarity=0.058  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYM-----KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ..++..++.++.+.|++++|+..+++++..+|.+.     ..+..+|.++...|++++|...       |+++++.+|++
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~al~~~p~~  213 (389)
T PRK11788        141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL-------LKKALAADPQC  213 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH-------HHHHHhHCcCC
Confidence            34455555555555555555555555555554432     1344555555556666666666       77777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++..++.++...++..++..
T Consensus       214 ~~~~~~la~~~~~~g~~~~A~~  235 (389)
T PRK11788        214 VRASILLGDLALAQGDYAAAIE  235 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHH
Confidence            7777777777766665554443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.54  E-value=8.4e-07  Score=66.16  Aligned_cols=93  Identities=16%  Similarity=0.063  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +....++..+|.++..+|++++|+..+++++.++|+++.+++.+|.++...|++++|+..       +.+++...|.++.
T Consensus       111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~-------l~~~l~~~~~~~~  183 (355)
T cd05804         111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF-------MESWRDTWDCSSM  183 (355)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHhhhhccCCCcc
Confidence            344566778899999999999999999999999999999999999999999999999999       9999988775332


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHH
Q 033182           83 ----AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ----~~~~l~~~~~~~~~~~~~~~  102 (125)
                          .+..+..++...++..+...
T Consensus       184 ~~~~~~~~la~~~~~~G~~~~A~~  207 (355)
T cd05804         184 LRGHNWWHLALFYLERGDYEAALA  207 (355)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHH
Confidence                34456677666665554443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.53  E-value=1.6e-06  Score=63.36  Aligned_cols=79  Identities=15%  Similarity=0.131  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .+.+++-+|.+|+..|+|.+|+..|++++...|+   .+.+++.+|.++..+|+++.|...       |+++++..|+..
T Consensus       179 a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~-------~~~vi~~yP~s~  251 (263)
T PRK10803        179 QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAV-------YQQVIKKYPGTD  251 (263)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCCH
Confidence            3578999999999999999999999999998876   578999999999999999999999       999999999988


Q ss_pred             HHHHHHHHH
Q 033182           82 QAKRTILRL   90 (125)
Q Consensus        82 ~~~~~l~~~   90 (125)
                      .+.....++
T Consensus       252 ~a~~A~~rL  260 (263)
T PRK10803        252 GAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHH
Confidence            766555443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.52  E-value=1.4e-07  Score=47.83  Aligned_cols=33  Identities=39%  Similarity=0.418  Sum_probs=31.2

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHchhHHHHHH
Q 033182           29 CTKALELNPTYMKALIRRAEAHEKLEHFEEAIA   61 (125)
Q Consensus        29 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~   61 (125)
                      |+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999999999999999999999863

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1e-06  Score=67.36  Aligned_cols=93  Identities=23%  Similarity=0.229  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +..-..|-++|+-.++.|+|..|...|..+|.+||++    ++.|.+++.+...+|+..+|+.+       ++.++.++|
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd-------c~~Al~iD~  318 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD-------CNEALKIDS  318 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh-------hhhhhhcCH
Confidence            4455678899999999999999999999999999964    77899999999999999999999       999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ....++...+.++..++++.++..
T Consensus       319 syikall~ra~c~l~le~~e~AV~  342 (486)
T KOG0550|consen  319 SYIKALLRRANCHLALEKWEEAVE  342 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988876654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.50  E-value=3.9e-07  Score=48.65  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR   89 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~   89 (125)
                      +.+++.+|.+|..+|++++|++.       |+++++.+|+++.++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~-------~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERL-------LRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCCHHHHHHhhh
Confidence            46789999999999999999999       99999999999999988765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.49  E-value=2.2e-06  Score=70.33  Aligned_cols=91  Identities=19%  Similarity=0.160  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.+|+.+|.+|.++|+.+.+....-.|--++|.+...|..++....++|++.+|.-+       |.+|++.+|.+..
T Consensus       170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c-------y~rAI~~~p~n~~  242 (895)
T KOG2076|consen  170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC-------YSRAIQANPSNWE  242 (895)
T ss_pred             ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH-------HHHHHhcCCcchH
Confidence            444455555555555555555555555555555555555555555555555555555555       5555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~  100 (125)
                      ......++++..++...+
T Consensus       243 ~~~ers~L~~~~G~~~~A  260 (895)
T KOG2076|consen  243 LIYERSSLYQKTGDLKRA  260 (895)
T ss_pred             HHHHHHHHHHHhChHHHH
Confidence            555555555554444333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.48  E-value=1.1e-06  Score=69.75  Aligned_cols=77  Identities=16%  Similarity=0.090  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +..+.+|.-+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|++.       |++|++++|.++.
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~-------~~~A~~L~P~~pt  488 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADA-------YSTAFNLRPGENT  488 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCCch
Confidence            345577888899999999999999999999999995 78999999999999999999999       9999999999885


Q ss_pred             HHHHHH
Q 033182           83 AKRTIL   88 (125)
Q Consensus        83 ~~~~l~   88 (125)
                       +.++.
T Consensus       489 -~~~~~  493 (517)
T PRK10153        489 -LYWIE  493 (517)
T ss_pred             -HHHHH
Confidence             44443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.48  E-value=3.5e-07  Score=45.88  Aligned_cols=34  Identities=32%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +++|+++|.++..+|++++|+..       |+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~-------~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEY-------YQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHH-------HHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHH-------HHHHHHHCcCC
Confidence            47899999999999999999999       99999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.44  E-value=3.3e-06  Score=69.92  Aligned_cols=86  Identities=17%  Similarity=0.223  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +..+..||.+|.+|-.+|+|++|..+|-++++.+|++ .-.++.+|+.+.+.|.++.|..+       |+++++..|++.
T Consensus       304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~-------fEkv~k~~p~~~  376 (1018)
T KOG2002|consen  304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC-------FEKVLKQLPNNY  376 (1018)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH-------HHHHHHhCcchH
Confidence            4567779999999999999999999999999999998 88999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAE   95 (125)
Q Consensus        82 ~~~~~l~~~~~~~~   95 (125)
                      ++...|+.++....
T Consensus       377 etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  377 ETMKILGCLYAHSA  390 (1018)
T ss_pred             HHHHHHHhHHHhhh
Confidence            99999999987663

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.42  E-value=4.5e-06  Score=66.18  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ..++++.++.+|-..|++++|+...+++|...|+.++.|..+|.++-+.|++.+|...       ++.+-++|+.+.-+.
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~-------~~~Ar~LD~~DRyiN  265 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA-------MDEARELDLADRYIN  265 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhCChhhHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999       999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhh
Q 033182           85 RTILRLQPLAEEKLEKMK-EEMIGK  108 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~-~~~~~~  108 (125)
                      .......-+.++-.++.+ ...|.+
T Consensus       266 sK~aKy~LRa~~~e~A~~~~~~Ftr  290 (517)
T PF12569_consen  266 SKCAKYLLRAGRIEEAEKTASLFTR  290 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhcC
Confidence            888877766665555554 334433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=1.9e-05  Score=57.24  Aligned_cols=85  Identities=19%  Similarity=0.103  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch---hHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE---HFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .+..+|..++..|+..|+|+.|.-+++.++-+.|.++..+.++|.+++-+|   +++.|..+       |.++++++|.+
T Consensus       152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky-------y~~alkl~~~~  224 (289)
T KOG3060|consen  152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY-------YERALKLNPKN  224 (289)
T ss_pred             CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHhChHh
Confidence            467889999999999999999999999999999999999999999998665   55667777       99999999977


Q ss_pred             HHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAE   95 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~   95 (125)
                      --+++.+.-+...+-
T Consensus       225 ~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  225 LRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777776665554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.41  E-value=7.8e-07  Score=71.70  Aligned_cols=81  Identities=20%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 033182           13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQP   92 (125)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~   92 (125)
                      |......++|+++.++++..++++|-....||++|-|..+++++..|..+       |.+++.++|++.+++.++...+.
T Consensus       492 ~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a-------F~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  492 ALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA-------FHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             ccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH-------HHHHhhcCCCchhhhhhhhHHHH
Confidence            33334456666666666666666666666666666666666666666666       66666666666666666666665


Q ss_pred             HHHHHHHH
Q 033182           93 LAEEKLEK  100 (125)
Q Consensus        93 ~~~~~~~~  100 (125)
                      ..++..++
T Consensus       565 ~~~~k~ra  572 (777)
T KOG1128|consen  565 RLKKKKRA  572 (777)
T ss_pred             HHhhhHHH
Confidence            55544444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.40  E-value=1.8e-06  Score=69.62  Aligned_cols=95  Identities=18%  Similarity=0.152  Sum_probs=87.0

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      |+|.....|+++|.|..+.++++.|..+|.+++.++|++..+|.|++.+|..+++..+|...       +.++++.+-++
T Consensus       514 ~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~-------l~EAlKcn~~~  586 (777)
T KOG1128|consen  514 INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK-------LKEALKCNYQH  586 (777)
T ss_pred             cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH-------HHHHhhcCCCC
Confidence            46778889999999999999999999999999999999999999999999999999999999       99999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++.+--.+.-.+++..++.+
T Consensus       587 w~iWENymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  587 WQIWENYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             CeeeechhhhhhhcccHHHHHH
Confidence            8888887777777777766655

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.39  E-value=1e-06  Score=43.92  Aligned_cols=34  Identities=35%  Similarity=0.558  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY   39 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~   39 (125)
                      +.+|+.+|.++..+|+|++|+..+++++.++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=7e-06  Score=62.50  Aligned_cols=88  Identities=25%  Similarity=0.255  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---------------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNP---------------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   72 (125)
                      -.-.+|+.|++.|+|..|...|++++..=.               ....++.|++.|+.+++.|..|+..       +.+
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~-------c~k  282 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES-------CNK  282 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH-------HHH
Confidence            345689999999999999999999876521               1245899999999999999999999       999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           73 ILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        73 a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +++++|+|..+.+-.+.++..+.+.+.+..
T Consensus       283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~  312 (397)
T KOG0543|consen  283 VLELDPNNVKALYRRGQALLALGEYDLARD  312 (397)
T ss_pred             HHhcCCCchhHHHHHHHHHHhhccHHHHHH
Confidence            999999999999999999988888776655

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.35  E-value=1.4e-06  Score=43.35  Aligned_cols=34  Identities=38%  Similarity=0.487  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +++++.+|.++..+|++++|+..       |+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~-------~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEY-------FEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHH-------HHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHCcCC
Confidence            46899999999999999999999       99999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=7.1e-06  Score=57.83  Aligned_cols=88  Identities=26%  Similarity=0.275  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +.-+-.-|+-++..|+|++|..-|..|+.+=|..     .-.|.|+|.|+++++.++.|+..       +.++++++|.+
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~d-------csKaiel~pty  167 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIED-------CSKAIELNPTY  167 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHH-------HHhhHhcCchh
Confidence            3445567888999999999999999999998864     45889999999999999999999       99999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~  100 (125)
                      ..+..-.+.++...+....+
T Consensus       168 ~kAl~RRAeayek~ek~eea  187 (271)
T KOG4234|consen  168 EKALERRAEAYEKMEKYEEA  187 (271)
T ss_pred             HHHHHHHHHHHHhhhhHHHH
Confidence            88877777777666554443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.33  E-value=4.7e-06  Score=60.15  Aligned_cols=73  Identities=12%  Similarity=0.060  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA---LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .+..++..|..+++.|+|++|+..|++++...|..+.+   .+.+|.++.+.++|++|+..       +++.++..|+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~-------~e~fi~~~P~~~  103 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAA-------IDRFIRLNPTHP  103 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHhCcCCC
Confidence            45568889999999999999999999999999987554   49999999999999999999       999999999876


Q ss_pred             HHH
Q 033182           82 QAK   84 (125)
Q Consensus        82 ~~~   84 (125)
                      .+.
T Consensus       104 ~~~  106 (243)
T PRK10866        104 NID  106 (243)
T ss_pred             chH
Confidence            643

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.32  E-value=2.6e-05  Score=54.66  Aligned_cols=81  Identities=23%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .....++..|..+++.|+|.+|+..|++++...|.   -..+.+.+|.++...|+|+.|+..       +++.++..|++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~-------~~~fi~~yP~~   75 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAA-------YERFIKLYPNS   75 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHH-------HHHHHHH-TT-
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCC
Confidence            35678899999999999999999999999999875   378999999999999999999999       99999999986


Q ss_pred             HH---HHHHHHHHH
Q 033182           81 NQ---AKRTILRLQ   91 (125)
Q Consensus        81 ~~---~~~~l~~~~   91 (125)
                      +.   +...++...
T Consensus        76 ~~~~~A~Y~~g~~~   89 (203)
T PF13525_consen   76 PKADYALYMLGLSY   89 (203)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHH
Confidence            54   555555543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.32  E-value=1.7e-05  Score=59.22  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc-HH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN-NQ   82 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~-~~   82 (125)
                      ..+-+|+.++..+...++++.|...+.++++.||+++++..-+|.+....|+|+.|++.       ++++++.||.. ++
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~-------~e~v~eQn~~yl~e  250 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA-------LERVLEQNPEYLSE  250 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH-------HHHHHHhChHHHHH
Confidence            35668899999999999999999999999999999999999999999999999999999       99999999985 56


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +...|..++..+++..+...
T Consensus       251 vl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         251 VLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             HHHHHHHHHHHhCCHHHHHH
Confidence            88888889888887765544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.31  E-value=2e-06  Score=69.64  Aligned_cols=75  Identities=21%  Similarity=0.189  Sum_probs=68.6

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIK--ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ++|..+.+..-+|.++.+.|+-.-|..  ....++++||.+.++|+.+|.++.++|+.++|.++       |..++++++
T Consensus       713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec-------f~aa~qLe~  785 (799)
T KOG4162|consen  713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC-------FQAALQLEE  785 (799)
T ss_pred             cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH-------HHHHHhhcc
Confidence            467778888899999999999877777  99999999999999999999999999999999999       999999998


Q ss_pred             CcHH
Q 033182           79 SNNQ   82 (125)
Q Consensus        79 ~~~~   82 (125)
                      ++|-
T Consensus       786 S~PV  789 (799)
T KOG4162|consen  786 SNPV  789 (799)
T ss_pred             CCCc
Confidence            8753

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.31  E-value=1.3e-05  Score=63.37  Aligned_cols=108  Identities=20%  Similarity=0.214  Sum_probs=91.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKI   73 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a   73 (125)
                      +|.-++++.|+|.+|.+.|+|++|...+++++.+-        |+-...+.+.+.++..++++++|...++.++-++..+
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            46778899999999999999999999999998763        4556788999999999999999999999999998877


Q ss_pred             HhhC-CCcHHHHHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 033182           74 LEFD-PSNNQAKRTILRLQPLAEEKLEKMK--EEMIGKL  109 (125)
Q Consensus        74 ~~l~-p~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~  109 (125)
                      +..+ |..+.++-.++.++...++..++.+  ...+...
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            7654 3677899999999999998888776  4444444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.30  E-value=1.5e-05  Score=52.87  Aligned_cols=90  Identities=16%  Similarity=0.130  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ...+.+.+|.+++..|++++|...|++++...|+.   ..+.++++.++..+|+|++|+..       ++. +.-.+-.+
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~-------L~~-~~~~~~~~  118 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALAT-------LQQ-IPDEAFKA  118 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHh-ccCcchHH
Confidence            35667788999999999999999999999987654   56889999999999999999998       755 33344556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .+...+++++...++..++..
T Consensus       119 ~~~~~~Gdi~~~~g~~~~A~~  139 (145)
T PF09976_consen  119 LAAELLGDIYLAQGDYDEARA  139 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHH
Confidence            677788888887776665543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.28  E-value=6e-06  Score=68.81  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ....|..||..|.+.+++..|+.+|..+++.+|.+..+|..+|++|...|+|..|++.       |.++..++|.+.-+.
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv-------F~kAs~LrP~s~y~~  633 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV-------FTKASLLRPLSKYGR  633 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh-------hhhhHhcCcHhHHHH
Confidence            4456778999999999999999999999999999999999999999999999999999       999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKM  101 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~  101 (125)
                      +..+.+....++..+..
T Consensus       634 fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  634 FKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             HHHHHHHHHhhhHHHHH
Confidence            88888877777665543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.28  E-value=3.2e-06  Score=60.22  Aligned_cols=84  Identities=19%  Similarity=0.207  Sum_probs=74.7

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      |+|..+.+++-+|..+...|+|+.|.+.|+.++++||.+--++.|+|.+++--|+|.-|.+.       +.+..+-||++
T Consensus        94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d-------~~~fYQ~D~~D  166 (297)
T COG4785          94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD-------LLAFYQDDPND  166 (297)
T ss_pred             cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH-------HHHHHhcCCCC
Confidence            46788899999999999999999999999999999999999999999999999999999999       99999999998


Q ss_pred             HHHHHHHHHHH
Q 033182           81 NQAKRTILRLQ   91 (125)
Q Consensus        81 ~~~~~~l~~~~   91 (125)
                      +--..|+--..
T Consensus       167 PfR~LWLYl~E  177 (297)
T COG4785         167 PFRSLWLYLNE  177 (297)
T ss_pred             hHHHHHHHHHH
Confidence            87555554443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.27  E-value=3e-05  Score=51.59  Aligned_cols=76  Identities=22%  Similarity=0.222  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      -...+++.|...++.|+|.+|+..++.+...-|.   -..+.+.++-+|.+.++|++|+..       +++.++++|+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~-------~~rFirLhP~hp   81 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAA-------YDRFIRLHPTHP   81 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCCC
Confidence            3456899999999999999999999999999874   467999999999999999999999       999999999987


Q ss_pred             HHHHHH
Q 033182           82 QAKRTI   87 (125)
Q Consensus        82 ~~~~~l   87 (125)
                      .+...+
T Consensus        82 ~vdYa~   87 (142)
T PF13512_consen   82 NVDYAY   87 (142)
T ss_pred             CccHHH
Confidence            754433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.25  E-value=9.1e-06  Score=67.38  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELN--PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+|.|+|.||+.+|+|..|+..|+.+++-.  .+++.....+|.+++..|.|.+|..+       +..+..+.|.++.+
T Consensus       680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~-------ll~a~~~~p~~~~v  752 (1018)
T KOG2002|consen  680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA-------LLKARHLAPSNTSV  752 (1018)
T ss_pred             CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHhCCccchH
Confidence            3679999999999999999999999998774  46788999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEK  100 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~  100 (125)
                      .++++-+..++.+....
T Consensus       753 ~FN~a~v~kkla~s~lr  769 (1018)
T KOG2002|consen  753 KFNLALVLKKLAESILR  769 (1018)
T ss_pred             HhHHHHHHHHHHHHHHh
Confidence            99998888777655433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.23  E-value=3.5e-06  Score=65.59  Aligned_cols=92  Identities=17%  Similarity=0.234  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      .++.+..|.|+.-+..|+++.|...|..++.-|....+++|+.|.++.++|+.++|+++       |-+...+--++.++
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~-------f~klh~il~nn~ev  560 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDC-------FLKLHAILLNNAEV  560 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHH-------HHHHHHHHHhhHHH
Confidence            34555666666666677777777777777777777777777777777777777777777       66666666666777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      ...+..++..++++.++..
T Consensus       561 l~qianiye~led~aqaie  579 (840)
T KOG2003|consen  561 LVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             HHHHHHHHHHhhCHHHHHH
Confidence            7777777777666655544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.20  E-value=7.4e-05  Score=49.46  Aligned_cols=86  Identities=23%  Similarity=0.170  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc----HHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN----NQA   83 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~----~~~   83 (125)
                      .+.-.|.+..+.|+.++|++-|.+++.+-|..+.+|.|+++++.-+|+.++|+++       +++++++..+-    -.+
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdD-------Ln~AleLag~~trtacqa  117 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDD-------LNKALELAGDQTRTACQA  117 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHH-------HHHHHHhcCccchHHHHH
Confidence            3445667777889999999999999999999999999999999999999999999       99999886442    225


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEK  100 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~  100 (125)
                      +...+.+++.+++.+.+
T Consensus       118 ~vQRg~lyRl~g~dd~A  134 (175)
T KOG4555|consen  118 FVQRGLLYRLLGNDDAA  134 (175)
T ss_pred             HHHHHHHHHHhCchHHH
Confidence            56666677666654433

>PRK11906 transcriptional regulator; Provisional

Probab=98.20  E-value=2.5e-05  Score=60.70  Aligned_cols=89  Identities=8%  Similarity=-0.051  Sum_probs=73.4

Q ss_pred             hhHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKL---------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   72 (125)
                      +|..+.+|.-++.||+..         ..-.+|.+..++++++||.++.++..+|.++-..++++.|...       |++
T Consensus       291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~-------f~r  363 (458)
T PRK11906        291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHIL-------FEQ  363 (458)
T ss_pred             CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHH-------HHH
Confidence            455678888888888875         2356788889999999999999999999999999999999999       999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           73 ILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        73 a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      ++.++|+...++...+-+.-.-++.
T Consensus       364 A~~L~Pn~A~~~~~~~~~~~~~G~~  388 (458)
T PRK11906        364 AKIHSTDIASLYYYRALVHFHNEKI  388 (458)
T ss_pred             HhhcCCccHHHHHHHHHHHHHcCCH
Confidence            9999999999888877755444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.19  E-value=3.3e-05  Score=51.01  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ....+...++..+...|+++.|+..+.+++..+|.+-.+|..+..++...|+..+|+..|++....+..-+...|+..
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            345567788888899999999999999999999999999999999999999999999998888888888888888743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=2.4e-05  Score=60.16  Aligned_cols=91  Identities=19%  Similarity=0.107  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+.+..-++.+++..++..+|++...+++..+|.+...+...+..+...++++.|+..       .++++++.|++-.+|
T Consensus       199 ~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i-------Ak~av~lsP~~f~~W  271 (395)
T PF09295_consen  199 DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI-------AKKAVELSPSEFETW  271 (395)
T ss_pred             CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHhCchhHHHH
Confidence            3556677899999999999999999999999999999999999999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..|..++...++.+.+-.
T Consensus       272 ~~La~~Yi~~~d~e~ALl  289 (395)
T PF09295_consen  272 YQLAECYIQLGDFENALL  289 (395)
T ss_pred             HHHHHHHHhcCCHHHHHH
Confidence            999999999998876643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=4.9e-06  Score=59.76  Aligned_cols=86  Identities=22%  Similarity=0.303  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182           10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR   89 (125)
Q Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~   89 (125)
                      ..-|..++....|..|+..|.++|.++|..+..|-+++.||+++.+|+....+       .+++++++|+.......++.
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~d-------crralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEED-------CRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhh-------HHHHHhcChHHHHHHHHHHH
Confidence            34466677778899999999999999999999999999999999999999999       99999999999999988888


Q ss_pred             HHHHHHHHHHHHH
Q 033182           90 LQPLAEEKLEKMK  102 (125)
Q Consensus        90 ~~~~~~~~~~~~~  102 (125)
                      .....+...+..+
T Consensus        87 ~~l~s~~~~eaI~   99 (284)
T KOG4642|consen   87 WLLQSKGYDEAIK   99 (284)
T ss_pred             HHHhhccccHHHH
Confidence            7766655554443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.14  E-value=6.4e-05  Score=51.87  Aligned_cols=75  Identities=21%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH---HHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182           21 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF---EEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE   95 (125)
Q Consensus        21 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~   95 (125)
                      -|+.|.+.++.....||.++..+++-|.++..+.++   .++..+|+.++--|+.|+.++|+..++...++..+-.+.
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            378899999999999999999999999999999888   457778999999999999999999999998888775554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=2e-05  Score=62.26  Aligned_cols=92  Identities=15%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |.++.-|+..|..|...|++++|.++|.++-.+||.+..+|...|.++-..|+.++|+..       |..|-++-|+.-.
T Consensus       309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaa-------Y~tAarl~~G~hl  381 (611)
T KOG1173|consen  309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAA-------YFTAARLMPGCHL  381 (611)
T ss_pred             CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHH-------HHHHHHhccCCcc
Confidence            677888999999999999999999999999999999999999999999999999999999       8888888888766


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~  101 (125)
                      ....++.-+-+......++
T Consensus       382 P~LYlgmey~~t~n~kLAe  400 (611)
T KOG1173|consen  382 PSLYLGMEYMRTNNLKLAE  400 (611)
T ss_pred             hHHHHHHHHHHhccHHHHH
Confidence            5555555444444443333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=2e-05  Score=61.54  Aligned_cols=91  Identities=18%  Similarity=0.143  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      .-+.+++|+|..+..+|+.++|+.+|-+...+--++++.++.++.+|..+.+..+|+++       +.++..+-|+++.+
T Consensus       522 sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~-------~~q~~slip~dp~i  594 (840)
T KOG2003|consen  522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL-------LMQANSLIPNDPAI  594 (840)
T ss_pred             HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH-------HHHhcccCCCCHHH
Confidence            34567999999999999999999999998888889999999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~  101 (125)
                      ...|++++.+-++..++.
T Consensus       595 lskl~dlydqegdksqaf  612 (840)
T KOG2003|consen  595 LSKLADLYDQEGDKSQAF  612 (840)
T ss_pred             HHHHHHHhhcccchhhhh
Confidence            999999998887766554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.00029  Score=51.21  Aligned_cols=87  Identities=18%  Similarity=0.096  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|++...+-..-.+..-+|+--+|++.....+..-+.+.++|..++..|...|.|++|.-+       +++++-++|.++
T Consensus       116 dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC-------lEE~ll~~P~n~  188 (289)
T KOG3060|consen  116 DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC-------LEELLLIQPFNP  188 (289)
T ss_pred             CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH-------HHHHHHcCCCcH
Confidence            3666666776666666677777888888888888888888999999999999999999999       888888899888


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAE   95 (125)
Q Consensus        82 ~~~~~l~~~~~~~~   95 (125)
                      -....++++.--++
T Consensus       189 l~f~rlae~~Yt~g  202 (289)
T KOG3060|consen  189 LYFQRLAEVLYTQG  202 (289)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777664444

>PRK11906 transcriptional regulator; Provisional

Probab=98.10  E-value=1.7e-05  Score=61.56  Aligned_cols=75  Identities=19%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +++.++-++..+|.+..-.++++.|...|++++.++|+.+.+|+..|..+...|+.++|.+.       ++++++++|.-
T Consensus       333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~-------i~~alrLsP~~  405 (458)
T PRK11906        333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC-------IDKSLQLEPRR  405 (458)
T ss_pred             cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHhccCchh
Confidence            46778889999999999999999999999999999999999999999999999999999999       99999999975


Q ss_pred             HH
Q 033182           81 NQ   82 (125)
Q Consensus        81 ~~   82 (125)
                      ..
T Consensus       406 ~~  407 (458)
T PRK11906        406 RK  407 (458)
T ss_pred             hH
Confidence            44

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.10  E-value=1.9e-05  Score=52.24  Aligned_cols=71  Identities=24%  Similarity=0.247  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      -|.++++|+||+.++.-+|+.++|+.++.+++.+.-..    -.++..+|..|..+|+-+.|..+       |+.+-++-
T Consensus        73 ~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~D-------Fe~AA~LG  145 (175)
T KOG4555|consen   73 APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARAD-------FEAAAQLG  145 (175)
T ss_pred             cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHh-------HHHHHHhC
Confidence            36789999999999999999999999999999996433    35788899999999999999999       99998875


Q ss_pred             CC
Q 033182           78 PS   79 (125)
Q Consensus        78 p~   79 (125)
                      +.
T Consensus       146 S~  147 (175)
T KOG4555|consen  146 SK  147 (175)
T ss_pred             CH
Confidence            54

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.10  E-value=3.8e-05  Score=42.76  Aligned_cols=48  Identities=27%  Similarity=0.293  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182           41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE   95 (125)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~   95 (125)
                      +.+|.+|..+.++|+|+.|...       .+.+++++|+|..+......+.+.+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~-------~~~lL~~eP~N~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRY-------CDALLEIEPDNRQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHH-------HHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHH-------HHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence            4688999999999999999999       99999999999998887777766554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.09  E-value=1.2e-05  Score=62.31  Aligned_cols=61  Identities=13%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHHHHHHHHHH
Q 033182           35 LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA---KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        35 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~---~~~l~~~~~~~~~~~~~~~  102 (125)
                      .+|+++.+|+++|.+|..+|+|++|+..       |+++++++|++.++   +.+++-++..+++..++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~-------f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla  133 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQ-------FETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD  133 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4689999999999999999999999999       99999999999865   8999999988887665554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.07  E-value=4.2e-05  Score=59.49  Aligned_cols=86  Identities=20%  Similarity=0.101  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .|....++.++|.++++.|++.+|+..+...+..+|+++..|..++.+|..+|+-.+|...       .-....+..+..
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-------~AE~~~~~G~~~  442 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-------RAEGYALAGRLE  442 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-------HHHHHHhCCCHH
Confidence            4667889999999999999999999999999999999999999999999999999999998       777777777777


Q ss_pred             HHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLA   94 (125)
Q Consensus        82 ~~~~~l~~~~~~~   94 (125)
                      .+...+....++.
T Consensus       443 ~A~~~l~~A~~~~  455 (484)
T COG4783         443 QAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHHHhc
Confidence            7777666665554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.06  E-value=2e-05  Score=44.92  Aligned_cols=52  Identities=25%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +.+|..+...|+|++|+..       |+++++.+|++..++..++.+....++..++..
T Consensus         1 ~~~a~~~~~~g~~~~A~~~-------~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~   52 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAA-------FEQALKQDPDNPEAWYLLGRILYQQGRYDEALA   52 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHH-------HHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHH-------HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            4689999999999999999       999999999999999999999998888877664

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.06  E-value=2.1e-05  Score=56.18  Aligned_cols=78  Identities=22%  Similarity=0.292  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ++.++..++.||..|=..|=+.-|.-+|++++.+.|+-+.++.-+|.-+..-|+|+.|.+.       |...+++||++.
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~ea-------Fds~~ELDp~y~  133 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA-------FDSVLELDPTYN  133 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHH-------hhhHhccCCcch
Confidence            3567889999999999999999999999999999999999999999999999999999999       999999999976


Q ss_pred             HHHHH
Q 033182           82 QAKRT   86 (125)
Q Consensus        82 ~~~~~   86 (125)
                      -+..+
T Consensus       134 Ya~lN  138 (297)
T COG4785         134 YAHLN  138 (297)
T ss_pred             HHHhc
Confidence            65543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=4e-05  Score=56.43  Aligned_cols=69  Identities=14%  Similarity=0.092  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           22 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        22 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      .+..+.-.+.-+..||++++.|..+|.+|+.+|++..|...       |.+++++.|+++++...+.++.-.....
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~A-------Y~~A~rL~g~n~~~~~g~aeaL~~~a~~  206 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLA-------YRNALRLAGDNPEILLGLAEALYYQAGQ  206 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHH-------HHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence            56667778888999999999999999999999999999999       9999999999999999999887555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.04  E-value=0.00016  Score=55.48  Aligned_cols=88  Identities=15%  Similarity=0.079  Sum_probs=74.6

Q ss_pred             HHHHHH-HHHHHHhcCHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            7 ICHSNR-GICFLKLGKFEESIKECTKALELNPTYMKAL-IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         7 ~~~~~~-~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+++-. +.+..++|+++.|...+.++.+.+|++..+. ...+..+...|+++.|...       +++..+.+|+++.+.
T Consensus       118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~-------l~~~~~~~P~~~~al  190 (398)
T PRK10747        118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG-------VDKLLEVAPRHPEVL  190 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCHHHH
Confidence            344444 5555889999999999999999999985443 4559999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKM  101 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~  101 (125)
                      ..+..++...+++.+..
T Consensus       191 ~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        191 RLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHHHHHHHHHHhHHHHH
Confidence            99999999988887665

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=6.2e-05  Score=58.04  Aligned_cols=105  Identities=17%  Similarity=0.139  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      .-|+--+.......+|+.|+...+++|..+|++..++...|..+..+++.++|+-.       |+.+..+.|..-+.+..
T Consensus       301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia-------FR~Aq~Lap~rL~~Y~G  373 (564)
T KOG1174|consen  301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA-------FRTAQMLAPYRLEIYRG  373 (564)
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH-------HHHHHhcchhhHHHHHH
Confidence            34666667777889999999999999999999999999999999999999999999       99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHHHhhhhh--hhhhHHH
Q 033182           87 ILRLQPLAEEKLEKMK--EEMIGKLGN--DFLLRFH  118 (125)
Q Consensus        87 l~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~  118 (125)
                      |-..+.+.+..+++..  .+.+..+++  ..+..||
T Consensus       374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            9999999988877765  556666643  3344454

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.01  E-value=0.00011  Score=53.59  Aligned_cols=94  Identities=14%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc---HH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN---NQ   82 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~---~~   82 (125)
                      .|+.+.-+++.|+|..|...|..-++.-|+.   +.++|-+|++++.+|+|++|...       |..+.+-.|++   ++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~-------f~~~~k~~P~s~KApd  216 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYI-------FARVVKDYPKSPKAPD  216 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHH-------HHHHHHhCCCCCCChH
Confidence            7899999999999999999999999998865   78999999999999999999999       99999988875   45


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 033182           83 AKRTILRLQPLAEEKLEKMK--EEMIGKL  109 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~  109 (125)
                      +...|+.+...+++.+.+-.  ..++.+.
T Consensus       217 allKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         217 ALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            66666666666665544433  4444444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.00  E-value=7.1e-05  Score=49.82  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchh---------------HHHHHHhHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEH---------------FEEAIAGIQDL   66 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~---------------~~~A~~~~~~~   66 (125)
                      -..+-..++.+|++.++|+.|+..+++-++++|++   .-+++.+|.++..+..               ...|...    
T Consensus        46 a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~----  121 (142)
T PF13512_consen   46 AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRD----  121 (142)
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHH----
Confidence            34567889999999999999999999999999976   4589999999999877               7778888    


Q ss_pred             HHHHHHHHhhCCCcHHHHHH
Q 033182           67 MIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~~~~~~   86 (125)
                         |++.++.-|++.-+...
T Consensus       122 ---f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen  122 ---FEQLVRRYPNSEYAADA  138 (142)
T ss_pred             ---HHHHHHHCcCChhHHHH
Confidence               88888888887665443

>PRK10941 hypothetical protein; Provisional

Probab=97.99  E-value=0.00017  Score=52.86  Aligned_cols=79  Identities=10%  Similarity=0.116  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ......|+=.+|++.++++.|+++.+..+.++|+++.-+.-+|.+|.++|.+..|..+       ++..++..|+++.+.
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~D-------L~~fl~~~P~dp~a~  252 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSD-------LSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH-------HHHHHHhCCCchhHH
Confidence            3456778899999999999999999999999999999999999999999999999999       999999999998876


Q ss_pred             HHHHHH
Q 033182           85 RTILRL   90 (125)
Q Consensus        85 ~~l~~~   90 (125)
                      .....+
T Consensus       253 ~ik~ql  258 (269)
T PRK10941        253 MIRAQI  258 (269)
T ss_pred             HHHHHH
Confidence            554443

>TIGR00540 hemY_coli hemY protein

Probab=97.98  E-value=0.00022  Score=54.92  Aligned_cols=90  Identities=13%  Similarity=0.038  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ...+.-.|.++.++|+++.|...+.++.+..|++. ......+..+...|+++.|...       +++..+.+|+++.+.
T Consensus       118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~-------l~~l~~~~P~~~~~l  190 (409)
T TIGR00540       118 VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG-------VDKLLEMAPRHKEVL  190 (409)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCHHHH
Confidence            34456677888888889999888888888888775 4556678888889999999988       889999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..+..++...+++.....
T Consensus       191 ~ll~~~~~~~~d~~~a~~  208 (409)
T TIGR00540       191 KLAEEAYIRSGAWQALDD  208 (409)
T ss_pred             HHHHHHHHHHhhHHHHHH
Confidence            888888888888765544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.98  E-value=0.00017  Score=60.21  Aligned_cols=72  Identities=11%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182           12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQ   91 (125)
Q Consensus        12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~   91 (125)
                      .|..+..+|+|..|+..|+++++.+|+++.+++.++.++...++.++|+..       ++++...+|.+... ..+..+.
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~-------l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQ-------ATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHH-------HHHhcccCcchHHH-HHHHHHH
Confidence            355777777777888888888888887777777777777777777777777       77777777775554 4444444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.98  E-value=0.00011  Score=58.22  Aligned_cols=99  Identities=22%  Similarity=0.172  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      +..+..+.|+|.+|..+|+|.+|.+.+++++++.        +.....+-++|..+..++++.+|.+.+..+..|+ +..
T Consensus       364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~  442 (508)
T KOG1840|consen  364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLC  442 (508)
T ss_pred             hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHh
Confidence            4567789999999999999999999999999875        3446788899999999999999999988888887 444


Q ss_pred             h-hCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           75 E-FDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        75 ~-l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      . -.|+...++.+|..++..+++...+.+
T Consensus       443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~  471 (508)
T KOG1840|consen  443 GPDHPDVTYTYLNLAALYRAQGNYEAAEE  471 (508)
T ss_pred             CCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence            4 356778899999999999998877766

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.97  E-value=0.00011  Score=47.58  Aligned_cols=60  Identities=22%  Similarity=0.140  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      +.+..++.++|.++...|++++|+..+++++...|+   +......++.++...|++++|+..
T Consensus        35 ~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~   97 (120)
T PF12688_consen   35 ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEW   97 (120)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            456778999999999999999999999999999888   888889999999999999999998

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.97  E-value=2.3e-05  Score=45.61  Aligned_cols=47  Identities=30%  Similarity=0.484  Sum_probs=42.1

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA   47 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~   47 (125)
                      ++|..+..|..+|.++.++|+|.+|..+++++++.+|+++.+...++
T Consensus        24 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen   24 LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            35788999999999999999999999999999999999888765544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.96  E-value=1.8e-05  Score=39.38  Aligned_cols=33  Identities=39%  Similarity=0.552  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTY   39 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~   39 (125)
                      .+|+.+|.+|.++|++++|+..|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999854

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.95  E-value=0.0002  Score=59.78  Aligned_cols=92  Identities=11%  Similarity=-0.043  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      .-......++.++.-.|++.+|+..+++.+...|.|...+..+|.++...|.+..|...       ++.+..++|++..+
T Consensus       414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~-------~k~a~~l~P~~~~~  486 (822)
T PRK14574        414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQE-------LKAVESLAPRSLIL  486 (822)
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH-------HHHHhhhCCccHHH
Confidence            33466778889999999999999999999999999999999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..........+++..+.+.
T Consensus       487 ~~~~~~~al~l~e~~~A~~  505 (822)
T PRK14574        487 ERAQAETAMALQEWHQMEL  505 (822)
T ss_pred             HHHHHHHHHhhhhHHHHHH
Confidence            9999999999988887765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.92  E-value=2.1e-05  Score=39.10  Aligned_cols=34  Identities=32%  Similarity=0.492  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .++|+.+|.++..+|++++|...       |+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~-------~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEY-------FEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHH-------HHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCCCC
Confidence            36899999999999999999999       99999999853

...

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00033  Score=52.62  Aligned_cols=85  Identities=15%  Similarity=0.165  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPT----YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +.-|-.-|+-|++..+|..|+..|++.|+-...    ++..|.|++.|...+|+|..|+.+       ..++++++|.+.
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~D-------cs~al~~~P~h~  153 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALND-------CSAALKLKPTHL  153 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHhcCcchh
Confidence            344667799999999999999999999988643    467899999999999999999999       999999999998


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEK   97 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~   97 (125)
                      .++.--+.+.-.++..
T Consensus       154 Ka~~R~Akc~~eLe~~  169 (390)
T KOG0551|consen  154 KAYIRGAKCLLELERF  169 (390)
T ss_pred             hhhhhhhHHHHHHHHH
Confidence            8887777777666653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.89  E-value=9.6e-05  Score=54.71  Aligned_cols=70  Identities=21%  Similarity=0.274  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH-HHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF-EEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +..+...+.|++.+|+|++|...+.+++..+|.++.+..|+..+...+|+. +.+.+.       +.+....+|+++-
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~-------l~qL~~~~p~h~~  271 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY-------LSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH-------HHHCHHHTTTSHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH-------HHHHHHhCCCChH
Confidence            455667777777777777777777777777777777777777777777777 444445       5555566777554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.88  E-value=8.8e-05  Score=59.53  Aligned_cols=83  Identities=19%  Similarity=0.146  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL   88 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~   88 (125)
                      ..-.|.....+|+-++|......+++.|+....+|+-+|..++.-.+|++|+.+       |+.|+.++|+|..++.-++
T Consensus        44 lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc-------y~nAl~~~~dN~qilrDls  116 (700)
T KOG1156|consen   44 LAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC-------YRNALKIEKDNLQILRDLS  116 (700)
T ss_pred             HHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH-------HHHHHhcCCCcHHHHHHHH
Confidence            334566666788888888888888888888888888888888888888888888       8888888888888888888


Q ss_pred             HHHHHHHHHH
Q 033182           89 RLQPLAEEKL   98 (125)
Q Consensus        89 ~~~~~~~~~~   98 (125)
                      -++.++++..
T Consensus       117 lLQ~QmRd~~  126 (700)
T KOG1156|consen  117 LLQIQMRDYE  126 (700)
T ss_pred             HHHHHHHhhh
Confidence            8877776553

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.87  E-value=0.0003  Score=52.73  Aligned_cols=80  Identities=28%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL   88 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~   88 (125)
                      -.+.+.-..+.|+.+.|...|+-++.++|+++.++...|.....-.+.-+|-.+       |-+++.++|+|.++..+..
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~-------Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQC-------YVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhh-------hheeeeeCCCchHHHhhhh
Confidence            345555566789999999999999999999999999999999999999999999       9999999999999888777


Q ss_pred             HHHHHHH
Q 033182           89 RLQPLAE   95 (125)
Q Consensus        89 ~~~~~~~   95 (125)
                      +......
T Consensus       192 RT~plV~  198 (472)
T KOG3824|consen  192 RTTPLVS  198 (472)
T ss_pred             ccchHHH
Confidence            6554444

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.87  E-value=0.00034  Score=46.24  Aligned_cols=82  Identities=18%  Similarity=0.229  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            7 ICHSNRGICFLKLG---KFEESIKECTKALE-LNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         7 ~~~~~~~~~~~~~~---~~~~A~~~~~~al~-l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ...+|.+++..+..   +..+.+..++..++ -+| ...+..|.++..+.++++|+.++.+       ....++.+|+|.
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~y-------vd~ll~~e~~n~  105 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRY-------VDALLETEPNNR  105 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHH-------HHHHHhhCCCcH
Confidence            35678888888754   46889999999997 455 3567899999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAE   95 (125)
Q Consensus        82 ~~~~~l~~~~~~~~   95 (125)
                      ++...-..+.+++.
T Consensus       106 Qa~~Lk~~ied~it  119 (149)
T KOG3364|consen  106 QALELKETIEDKIT  119 (149)
T ss_pred             HHHHHHHHHHHHHh
Confidence            98877777666554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.86  E-value=0.00012  Score=61.36  Aligned_cols=83  Identities=16%  Similarity=0.061  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-------------------HHHHHHHHHHHHchhHHHHHHhH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM-------------------KALIRRAEAHEKLEHFEEAIAGI   63 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-------------------~~~~~~~~~~~~~~~~~~A~~~~   63 (125)
                      |....+|+-.|..+.+.+++..+...  +++..-+.+.                   .+++.+|.||-++|++++|... 
T Consensus        62 P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~-  138 (906)
T PRK14720         62 KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGV-  138 (906)
T ss_pred             CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHH-
Confidence            44455566666666666555554443  4444444444                   7889999999999999999999 


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182           64 QDLMIVMKKILEFDPSNNQAKRTILRLQPLA   94 (125)
Q Consensus        64 ~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~   94 (125)
                            |+++++++|+|+.+...++..+...
T Consensus       139 ------yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        139 ------WERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             ------HHHHHhcCcccHHHHHHHHHHHHHh
Confidence                  9999999999999999888877665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.85  E-value=2.8e-05  Score=45.87  Aligned_cols=66  Identities=12%  Similarity=0.121  Sum_probs=47.9

Q ss_pred             CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           37 PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        37 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      |+-+.++.++|.++..+|+|++|+..+++++.+.+..-..+|....+...++.++...++..++..
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   67 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE   67 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            556789999999999999999999996666666322222223345678888888888888776655

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.85  E-value=0.00011  Score=48.65  Aligned_cols=64  Identities=17%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      +....+..+++.+++..|+|++|+..++. +.-.+-.+..+..+|.++...|++++|+..       |++++
T Consensus        82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~-------y~~Al  145 (145)
T PF09976_consen   82 ELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA-------YQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH-------HHHhC
Confidence            34567899999999999999999999966 344455677889999999999999999999       76653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.84  E-value=2.5e-05  Score=58.70  Aligned_cols=87  Identities=15%  Similarity=0.163  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELN--P-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ..+..|+|+|.|.+-.++++-++..|.+++...  | ..+..|||+|.+....|++-.|.++       |+-++.-||++
T Consensus       356 ~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc-------frlaL~~d~~h  428 (478)
T KOG1129|consen  356 QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC-------FRLALTSDAQH  428 (478)
T ss_pred             CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH-------HHHHhccCcch
Confidence            457789999999999999999999999998774  3 3578999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEK   97 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~   97 (125)
                      .+++.+|+.+..+-++-
T Consensus       429 ~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  429 GEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHHhHHHHHhhcCch
Confidence            99999999887655543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.00024  Score=52.17  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc---H
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN---N   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~---~   81 (125)
                      ...+..|.+..|.-.++|.+|.+.+++++..||.++.+-.+.|.|++-+|+..+|++.       ++.+++..|+.   .
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~-------~e~~~~~~P~~~l~e  323 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ-------LEAMVQQDPRHYLHE  323 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH-------HHHHhccCCccchhh
Confidence            4466778889999999999999999999999999999999999999999999999999       99999999974   3


Q ss_pred             HHHHHHHHHHH
Q 033182           82 QAKRTILRLQP   92 (125)
Q Consensus        82 ~~~~~l~~~~~   92 (125)
                      ....+|.++++
T Consensus       324 s~~~nL~tmyE  334 (366)
T KOG2796|consen  324 SVLFNLTTMYE  334 (366)
T ss_pred             hHHHHHHHHHH
Confidence            44555666554

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00027  Score=51.32  Aligned_cols=89  Identities=19%  Similarity=0.241  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CC----------CChHHHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALEL--------NP----------TYMKALIRRAEAHEKLEHFEEAIAGIQDLM   67 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------~p----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~   67 (125)
                      ..+.-..|+-+++.|+|.+|...|..|+..        .|          .+...+.|.++|+...|+|-++++.     
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh-----  252 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH-----  252 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH-----
Confidence            345678899999999999999999988633        23          3446889999999999999999999     


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182           68 IVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        68 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  101 (125)
                        ...++..+|+|..+++-.++.........++.
T Consensus       253 --~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~  284 (329)
T KOG0545|consen  253 --CSEILRHHPGNVKAYFRRAKAHAAVWNEAEAK  284 (329)
T ss_pred             --HHHHHhcCCchHHHHHHHHHHHHhhcCHHHHH
Confidence              99999999999999999998887776555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.79  E-value=0.00036  Score=50.84  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .-+.++|=+|.+++.+|+|+.|...|..+++-.|+.   +++++-+|.+...+|+.++|...       |+.+++.=|+.
T Consensus       176 ~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~at-------l~qv~k~YP~t  248 (262)
T COG1729         176 YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACAT-------LQQVIKRYPGT  248 (262)
T ss_pred             ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHHCCCC
Confidence            346788899999999999999999999999987754   67899999999999999999999       99999999998


Q ss_pred             HHHHHHHHH
Q 033182           81 NQAKRTILR   89 (125)
Q Consensus        81 ~~~~~~l~~   89 (125)
                      ..+...-..
T Consensus       249 ~aA~~Ak~~  257 (262)
T COG1729         249 DAAKLAKVA  257 (262)
T ss_pred             HHHHHHHHH
Confidence            887655443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.78  E-value=0.00032  Score=56.46  Aligned_cols=93  Identities=17%  Similarity=0.212  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +....||--.|..+....+|.+|+++|..|+.++|+|...+.-++....++++|+-....       ..+.+++.|+...
T Consensus        72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t-------r~~LLql~~~~ra  144 (700)
T KOG1156|consen   72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET-------RNQLLQLRPSQRA  144 (700)
T ss_pred             cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHhhhhhHH
Confidence            445678999999999999999999999999999999999999999999999999999998       8999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .|...+..+-..++...+..
T Consensus       145 ~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen  145 SWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88777776666665554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.78  E-value=0.00011  Score=56.59  Aligned_cols=60  Identities=25%  Similarity=0.287  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      |..+..+.--+..+++.++++.|+..+.+++.+.|...++|+.++.+|..+|+|+.|+..
T Consensus       231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla  290 (395)
T PF09295_consen  231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA  290 (395)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            445677778888999999999999999999999999999999999999999999999987

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.78  E-value=2.8e-05  Score=60.41  Aligned_cols=87  Identities=26%  Similarity=0.224  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL   88 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~   88 (125)
                      .-+-+.-+++-+.|+.|+..|.++|.++|+++..+-+++.++.+.++|..|+.+       +.++++++|.....+...+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~D-------a~kaie~dP~~~K~Y~rrg   79 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHD-------ALKAIELDPTYIKAYVRRG   79 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHH-------HHhhhhcCchhhheeeecc
Confidence            445667778889999999999999999999999999999999999999999999       9999999999877777666


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           89 RLQPLAEEKLEKMK  102 (125)
Q Consensus        89 ~~~~~~~~~~~~~~  102 (125)
                      ....++.+..++..
T Consensus        80 ~a~m~l~~~~~A~~   93 (476)
T KOG0376|consen   80 TAVMALGEFKKALL   93 (476)
T ss_pred             HHHHhHHHHHHHHH
Confidence            66666666655443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.77  E-value=0.00022  Score=54.77  Aligned_cols=77  Identities=12%  Similarity=-0.005  Sum_probs=65.1

Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           18 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        18 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      ..+++..++...++.++.+|+++..++.+|..+...++|++|...       |+++++.+|++.. ...+..++...++.
T Consensus       306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~-------le~al~~~P~~~~-~~~La~~~~~~g~~  377 (398)
T PRK10747        306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA-------FRAALKQRPDAYD-YAWLADALDRLHKP  377 (398)
T ss_pred             cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCHHH-HHHHHHHHHHcCCH
Confidence            347888888888888899999999999999999999999999999       9999999999755 45688888877766


Q ss_pred             HHHHH
Q 033182           98 LEKMK  102 (125)
Q Consensus        98 ~~~~~  102 (125)
                      .++..
T Consensus       378 ~~A~~  382 (398)
T PRK10747        378 EEAAA  382 (398)
T ss_pred             HHHHH
Confidence            65543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.75  E-value=0.00036  Score=50.58  Aligned_cols=71  Identities=24%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +..|++-|...++.|+|.+|++.|+.+....|..   .++...++-++++.++|+.|+..       ..+.+++.|+++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~-------~drFi~lyP~~~n  106 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAY-------IDRFIRLYPTHPN  106 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHH-------HHHHHHhCCCCCC
Confidence            4679999999999999999999999999998854   67899999999999999999999       9999999998776


Q ss_pred             H
Q 033182           83 A   83 (125)
Q Consensus        83 ~   83 (125)
                      +
T Consensus       107 ~  107 (254)
T COG4105         107 A  107 (254)
T ss_pred             h
Confidence            4

>TIGR00540 hemY_coli hemY protein

Probab=97.73  E-value=0.00024  Score=54.68  Aligned_cols=73  Identities=16%  Similarity=-0.066  Sum_probs=38.0

Q ss_pred             cCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHchhHHHHHHhHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHHH
Q 033182           20 GKFEESIKECTKALELNPTYM--KALIRRAEAHEKLEHFEEAIAGIQDLMIVMK--KILEFDPSNNQAKRTILRLQPLAE   95 (125)
Q Consensus        20 ~~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~a~~l~p~~~~~~~~l~~~~~~~~   95 (125)
                      ++...++..++++++.+|+++  .....+|..+...|+|++|.++       |+  .+++.+|++.. ...++.+....+
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~-------le~a~a~~~~p~~~~-~~~La~ll~~~g  384 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA-------FKNVAACKEQLDAND-LAMAADAFDQAG  384 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH-------HHHhHHhhcCCCHHH-HHHHHHHHHHcC
Confidence            444444455555555555555  4455556666666666666666       55  35555555444 225555555555


Q ss_pred             HHHHH
Q 033182           96 EKLEK  100 (125)
Q Consensus        96 ~~~~~  100 (125)
                      +..++
T Consensus       385 ~~~~A  389 (409)
T TIGR00540       385 DKAEA  389 (409)
T ss_pred             CHHHH
Confidence            44433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.72  E-value=0.00023  Score=53.07  Aligned_cols=88  Identities=14%  Similarity=0.155  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-------------------------------------HHHHHHHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYM-------------------------------------KALIRRAEAH   50 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-------------------------------------~~~~~~~~~~   50 (125)
                      ....++.++...|++++|...+++++..+|++.                                     .++..+|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            344566666666777777776666666666554                                     3344567788


Q ss_pred             HHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           51 EKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        51 ~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..+|++++|...       ++++++++|++..+...++.++...++.++...
T Consensus       125 ~~~G~~~~A~~~-------~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~  169 (355)
T cd05804         125 EEAGQYDRAEEA-------ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA  169 (355)
T ss_pred             HHcCCHHHHHHH-------HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999       999999999999999999999887777665554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>smart00028 TPR Tetratricopeptide repeats

Probab=97.72  E-value=8.8e-05  Score=34.92  Aligned_cols=33  Identities=39%  Similarity=0.633  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTY   39 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~   39 (125)
                      .+|+++|.++..+++++.|+..+++++..+|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.71  E-value=0.0004  Score=56.34  Aligned_cols=83  Identities=16%  Similarity=0.105  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      .+|+.-+....-+++.++|++.++.+++.-|++.+.|..+|+++..+++.+.|...       |...++.-|.....+..
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a-------Y~~G~k~cP~~ipLWll  724 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA-------YLQGTKKCPNSIPLWLL  724 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH-------HHhccccCCCCchHHHH
Confidence            45666677777789999999999999999999999999999999999999999999       99999999999999999


Q ss_pred             HHHHHHHHHH
Q 033182           87 ILRLQPLAEE   96 (125)
Q Consensus        87 l~~~~~~~~~   96 (125)
                      |.++....+.
T Consensus       725 LakleEk~~~  734 (913)
T KOG0495|consen  725 LAKLEEKDGQ  734 (913)
T ss_pred             HHHHHHHhcc
Confidence            9988877653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=3e-05  Score=58.29  Aligned_cols=79  Identities=14%  Similarity=0.063  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ...+.+|+|+|.+....|++..|.+.|+-++.-||++.+++.|+|..-...|+.+.|...       +..+-...|.-.+
T Consensus       392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl-------l~~A~s~~P~m~E  464 (478)
T KOG1129|consen  392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL-------LNAAKSVMPDMAE  464 (478)
T ss_pred             chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH-------HHHhhhhCccccc
Confidence            345789999999999999999999999999999999999999999999999999999999       9999999998766


Q ss_pred             HHHHHH
Q 033182           83 AKRTIL   88 (125)
Q Consensus        83 ~~~~l~   88 (125)
                      ...+++
T Consensus       465 ~~~Nl~  470 (478)
T KOG1129|consen  465 VTTNLQ  470 (478)
T ss_pred             ccccee
Confidence            555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.69  E-value=7.7e-05  Score=42.70  Aligned_cols=47  Identities=17%  Similarity=0.206  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE   48 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~   48 (125)
                      +|.+..+++.++.|+++.|++++|...+++++..+|+++..+..++.
T Consensus        21 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen   21 NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            47788999999999999999999999999999999999887766654

...

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.66  E-value=0.00025  Score=59.52  Aligned_cols=76  Identities=11%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHH-------------HHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL-------------MIVMKKI   73 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-------------~~~~~~a   73 (125)
                      .+++.+|.||-++|++++|...+++++++||+++.+..++|-.|... +.++|..++.+|             ..+|++.
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~  195 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL  195 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999 999999984333             3456666


Q ss_pred             HhhCCCcHHH
Q 033182           74 LEFDPSNNQA   83 (125)
Q Consensus        74 ~~l~p~~~~~   83 (125)
                      ++.+|++.+.
T Consensus       196 ~~~~~~d~d~  205 (906)
T PRK14720        196 VHYNSDDFDF  205 (906)
T ss_pred             HhcCcccchH
Confidence            6666765554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.65  E-value=0.00058  Score=54.40  Aligned_cols=93  Identities=9%  Similarity=-0.008  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLG--------KFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMK   71 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~   71 (125)
                      +|..+.+|..++.+|....        +...+.....+++.+  +|..+.+|..+|..+...|++++|...       ++
T Consensus       372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~-------l~  444 (517)
T PRK10153        372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQA-------IN  444 (517)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHH-------HH
Confidence            4566677777777776642        345666666776664  788899999999999999999999999       99


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           72 KILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        72 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +++.++|+ ..++..++.++...++..++..
T Consensus       445 rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~  474 (517)
T PRK10153        445 KAIDLEMS-WLNYVLLGKVYELKGDNRLAAD  474 (517)
T ss_pred             HHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence            99999995 7899999999988887766654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.64  E-value=0.00082  Score=53.55  Aligned_cols=80  Identities=21%  Similarity=0.188  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+.+..-...++.+.|++++|+.++++.-..-++.....-.+|.++.++|++++|...       |+..+..||+|..-+
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~-------y~~Li~rNPdn~~Yy   75 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKI-------YRELIDRNPDNYDYY   75 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCcHHHH
Confidence            3566677778888999999999999998888889999999999999999999999999       999999999999988


Q ss_pred             HHHHHHH
Q 033182           85 RTILRLQ   91 (125)
Q Consensus        85 ~~l~~~~   91 (125)
                      ..+..+.
T Consensus        76 ~~L~~~~   82 (517)
T PF12569_consen   76 RGLEEAL   82 (517)
T ss_pred             HHHHHHH
Confidence            8888776

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.64  E-value=1.8e-05  Score=59.37  Aligned_cols=72  Identities=29%  Similarity=0.381  Sum_probs=66.8

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      ++|....+|.+|+.+++++++...|+++|..++.++|+..+.|-.+|.+...+|+|++|..+       +..+.+++-+
T Consensus       143 lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d-------l~~a~kld~d  214 (377)
T KOG1308|consen  143 LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD-------LALACKLDYD  214 (377)
T ss_pred             cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH-------HHHHHhcccc
Confidence            35677889999999999999999999999999999999999999999999999999999999       8888887644

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=0.0009  Score=51.10  Aligned_cols=55  Identities=18%  Similarity=0.192  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      .-.-+|.|++..|+|++|+..|+.+..-+-.+++.+.+++.|..-+|.|.+|...
T Consensus        59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~  113 (557)
T KOG3785|consen   59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI  113 (557)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            3344788999999999999999998887777788888888888888888887654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.00089  Score=50.29  Aligned_cols=92  Identities=12%  Similarity=0.061  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ....+.-.+-..|....+|+.|+...++..++++..     +..|+.++..+....+.+.|...       ++++++-+|
T Consensus       139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~-------l~kAlqa~~  211 (389)
T COG2956         139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL-------LKKALQADK  211 (389)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHhhCc
Confidence            445667788889999999999999999999998854     56888888888888888888888       999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++.-+...++++....++...+.+
T Consensus       212 ~cvRAsi~lG~v~~~~g~y~~AV~  235 (389)
T COG2956         212 KCVRASIILGRVELAKGDYQKAVE  235 (389)
T ss_pred             cceehhhhhhHHHHhccchHHHHH
Confidence            999999999999877776655544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.60  E-value=0.0026  Score=44.56  Aligned_cols=86  Identities=19%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchh-----------HHHHHHhHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEH-----------FEEAIAGIQDLMI   68 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~-----------~~~A~~~~~~~~~   68 (125)
                      +.-..+.+.+|.++.+.|+|..|+..+++.+...|+.   +.+++.+|.++..+..           ..+|...      
T Consensus        39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~------  112 (203)
T PF13525_consen   39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE------  112 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHH------
Confidence            4456788999999999999999999999999999875   5689999999776543           3467777      


Q ss_pred             HHHHHHhhCCCcHH---HHHHHHHHHHHHH
Q 033182           69 VMKKILEFDPSNNQ---AKRTILRLQPLAE   95 (125)
Q Consensus        69 ~~~~a~~l~p~~~~---~~~~l~~~~~~~~   95 (125)
                       |+..++.-|+.+-   +...+..+...+.
T Consensus       113 -~~~li~~yP~S~y~~~A~~~l~~l~~~la  141 (203)
T PF13525_consen  113 -FEELIKRYPNSEYAEEAKKRLAELRNRLA  141 (203)
T ss_dssp             -HHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence             9999999998654   4444445544443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.58  E-value=0.00049  Score=50.99  Aligned_cols=71  Identities=20%  Similarity=0.194  Sum_probs=60.3

Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      +++.+|...|+......|..+..+..++.|++.+|+|++|...       ++.+++.+|+++++..++..+....++.
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~-------L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEEL-------LEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHH-------HHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            3589999999998777778899999999999999999999999       9999999999999999999988777766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.58  E-value=0.0014  Score=55.19  Aligned_cols=62  Identities=18%  Similarity=0.172  Sum_probs=59.8

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      .+|.+..+|..+|.+|-..|+|..|++.|+++..++|..--+.|..+...+..|+|++|++.
T Consensus       591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999998

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.58  E-value=0.00014  Score=36.99  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALEL   35 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l   35 (125)
                      +|.++|.+|.++|+|++|+..|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4778899999999999999999986544

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.00012  Score=55.15  Aligned_cols=93  Identities=23%  Similarity=0.223  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +.+..++.|.+.+-++.+.+..|+.....+++.++...+++++++..+..+.++++|.++       ++.+.+..|.+..
T Consensus       272 ~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~-------~~~a~~~~p~d~~  344 (372)
T KOG0546|consen  272 ELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALED-------LKKAKQKAPNDKA  344 (372)
T ss_pred             ccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHH-------HHHhhccCcchHH
Confidence            455667788999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +...+.......++.....+
T Consensus       345 i~~~~~~~~~~~~~~~~~~~  364 (372)
T KOG0546|consen  345 IEEELENVRQKKKQYNRKQK  364 (372)
T ss_pred             HHHHHHHhhhHHHHHHHHHH
Confidence            99988888777776654443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.56  E-value=0.00074  Score=37.51  Aligned_cols=43  Identities=26%  Similarity=0.384  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA   49 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~   49 (125)
                      .+++.+|..+.++|+|..|.+..+.+++.+|+|..+......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4788999999999999999999999999999998876554443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.55  E-value=0.0042  Score=44.84  Aligned_cols=85  Identities=16%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHch------------------hHHHHHHh
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLE------------------HFEEAIAG   62 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~------------------~~~~A~~~   62 (125)
                      ....+.+.+|.+|++.++|++|+..+++.++.+|++   +.+++.+|.++..++                  .-..|+..
T Consensus        67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~  146 (243)
T PRK10866         67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD  146 (243)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH
Confidence            344567899999999999999999999999999876   568999998875554                  23466677


Q ss_pred             HHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHHH
Q 033182           63 IQDLMIVMKKILEFDPSNNQ---AKRTILRLQPLAE   95 (125)
Q Consensus        63 ~~~~~~~~~~a~~l~p~~~~---~~~~l~~~~~~~~   95 (125)
                             |++.++.-|+..-   +...+..+...+.
T Consensus       147 -------~~~li~~yP~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866        147 -------FSKLVRGYPNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             -------HHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence                   9999999998654   4444444444443

>smart00028 TPR Tetratricopeptide repeats

Probab=97.53  E-value=0.00025  Score=33.24  Aligned_cols=33  Identities=39%  Similarity=0.538  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182           41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .+++++|.++..+++++.|...       ++++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~-------~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEY-------YEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHH-------HHHHHccCCCC
Confidence            5789999999999999999999       99999988863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.52  E-value=0.0003  Score=34.32  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182           41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .+++++|.++...|++++|+..       |+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~-------~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEY-------FQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHH-------HHHHHHHCcCC
Confidence            4789999999999999999999       99999999874

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.50  E-value=0.0011  Score=40.72  Aligned_cols=65  Identities=23%  Similarity=0.293  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHH
Q 033182           25 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--NQAKRTILRLQPLAEE   96 (125)
Q Consensus        25 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~   96 (125)
                      .+..+++.+..+|++..+.+.+|..+...|++++|++.       +..+++.+|++  ..+...+-.+...++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~-------Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQ-------LLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHH-------HHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            45678899999999999999999999999999999999       99999999876  6677777777777764

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.47  E-value=0.00021  Score=51.30  Aligned_cols=59  Identities=31%  Similarity=0.497  Sum_probs=55.0

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182           16 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus        16 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ..+.++.+.|.+.|.+++.+-|.+..+|+++|....+.|+++.|.+.       |++.++++|.+.
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a-------~~~~L~ldp~D~   63 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAA-------YEEVLELDPEDH   63 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHH-------HHHHHcCCcccc
Confidence            44678999999999999999999999999999999999999999999       999999999753

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0073  Score=46.98  Aligned_cols=38  Identities=26%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182           25 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus        25 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      |-+.++++++++|.+..+...+++.+..-|.+++++..
T Consensus       423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L  460 (564)
T KOG1174|consen  423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL  460 (564)
T ss_pred             HHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence            34444555555565555555555555544444444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.41  E-value=0.00034  Score=35.50  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182           42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus        42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      ++.++|.+|..+|+|++|+..       |++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~-------y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEY-------YEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHH-------HHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHH-------HHHHHHh
Confidence            578999999999999999999       8775543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.41  E-value=0.00046  Score=33.65  Aligned_cols=32  Identities=22%  Similarity=0.476  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTY   39 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~   39 (125)
                      +++++|.++.+.|++++|+..+++++...|+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            68999999999999999999999999998863

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.00074  Score=53.69  Aligned_cols=82  Identities=26%  Similarity=0.302  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKL---GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      |....++.|++.++++.   |+--.|++++..++++||...++|+.++.++..++++.+|+++       ...+....|.
T Consensus       405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~-------~~alq~~~Pt  477 (758)
T KOG1310|consen  405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC-------HWALQMSFPT  477 (758)
T ss_pred             cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh-------HHHHhhcCch
Confidence            45677899999999985   5667899999999999999999999999999999999999998       7777777886


Q ss_pred             cHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQ   91 (125)
Q Consensus        80 ~~~~~~~l~~~~   91 (125)
                      +.........+.
T Consensus       478 d~a~~~~v~~l~  489 (758)
T KOG1310|consen  478 DVARQNFVLCLP  489 (758)
T ss_pred             hhhhhhhhhccc
Confidence            655444443333

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.24  E-value=7.3e-05  Score=56.16  Aligned_cols=80  Identities=25%  Similarity=0.272  Sum_probs=70.7

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182           16 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE   95 (125)
Q Consensus        16 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~   95 (125)
                      ....|.+..|+..|..++.++|..+..|-.++.++.++++...|+.+       +..+++++|+...-+.+.+.....++
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD-------~d~A~ein~Dsa~~ykfrg~A~rllg  196 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRD-------CDFAIEINPDSAKGYKFRGYAERLLG  196 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhh-------hhhhhccCcccccccchhhHHHHHhh
Confidence            34468899999999999999999999999999999999999999999       99999999998887888887777777


Q ss_pred             HHHHHHH
Q 033182           96 EKLEKMK  102 (125)
Q Consensus        96 ~~~~~~~  102 (125)
                      .+.++.+
T Consensus       197 ~~e~aa~  203 (377)
T KOG1308|consen  197 NWEEAAH  203 (377)
T ss_pred             chHHHHH
Confidence            6655544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.05  E-value=0.0034  Score=48.84  Aligned_cols=96  Identities=21%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----C--CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELN----P--TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~----p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      -.++.|+|+||+-.|+|+.|+++|...+.+.    .  .-+...|.+|.+|+-+.++..|+.+.++-+-|-+. +.--.+
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe-L~DriG  313 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE-LEDRIG  313 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence            3578899999999999999999999876543    2  23678899999999999999999994433333211 111134


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ...+.+.|+.....+.+...+..
T Consensus       314 e~RacwSLgna~~alg~h~kAl~  336 (639)
T KOG1130|consen  314 ELRACWSLGNAFNALGEHRKALY  336 (639)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHH
Confidence            45567777777777776665554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.96  E-value=0.00081  Score=33.76  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=27.4

Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182           70 MKKILEFDPSNNQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        70 ~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  100 (125)
                      |+++++++|++..++..++.++...++..++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            7899999999999999999999888776554

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.013  Score=43.00  Aligned_cols=77  Identities=18%  Similarity=0.207  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      +....|+=..+++.++++.|....++.+.++|.++.-+.-+|.+|..+|.+.-|+.+       ++..++.-|+.+.+..
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~d-------l~~~~~~~P~~~~a~~  253 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALED-------LSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHH-------HHHHHHhCCCchHHHH
Confidence            445567777888999999999999999999999999999999999999999999999       9999999999877654


Q ss_pred             HHHH
Q 033182           86 TILR   89 (125)
Q Consensus        86 ~l~~   89 (125)
                      ....
T Consensus       254 ir~~  257 (269)
T COG2912         254 IRAQ  257 (269)
T ss_pred             HHHH
Confidence            4433

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.80  E-value=0.047  Score=43.34  Aligned_cols=80  Identities=18%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-HHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      +..+|.+......+.+.+.+.-..|.+++..+|+++..|.-.|.-.+.-+. .+.|.+.       |.++++++|+++..
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRal-------flrgLR~npdsp~L  176 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARAL-------FLRGLRFNPDSPKL  176 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHH-------HHHHhhcCCCChHH
Confidence            456777777666666779999999999999999999999999998887776 7888888       99999999999987


Q ss_pred             HHHHHHHH
Q 033182           84 KRTILRLQ   91 (125)
Q Consensus        84 ~~~l~~~~   91 (125)
                      +..--++.
T Consensus       177 w~eyfrmE  184 (568)
T KOG2396|consen  177 WKEYFRME  184 (568)
T ss_pred             HHHHHHHH
Confidence            76544443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.73  E-value=0.003  Score=49.96  Aligned_cols=86  Identities=21%  Similarity=0.124  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------cCC---------CChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALE---------LNP---------TYMKALIRRAEAHEKLEHFEEAIAGIQDL   66 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---------l~p---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~   66 (125)
                      ...+|+|+|.++++++.|.-+...|.++++         +.|         ...+..||+|..+.+.|+...|.++    
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC----  357 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC----  357 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH----
Confidence            456789999999999999999999999986         112         2467899999999999999999999    


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           67 MIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                         |..+.+.-..++-.|.-+.++..+..+.
T Consensus       358 ---f~~av~vfh~nPrlWLRlAEcCima~~~  385 (696)
T KOG2471|consen  358 ---FQKAVHVFHRNPRLWLRLAECCIMALQK  385 (696)
T ss_pred             ---HHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence               8888887788888999888887665543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.021  Score=42.21  Aligned_cols=93  Identities=20%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----hcC--CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKAL----ELN--PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al----~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      |.++.....+|...++.|+.+.|...|+.+-    +++  ..+.-.+.+.+.++...++|.+|...       +.+++..
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~-------~~~i~~~  281 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF-------FTEILRM  281 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH-------Hhhcccc
Confidence            5567778888999999999999999998543    333  35567888899999999999999999       9999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           77 DPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        77 ~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ||.++.+....+-|.--+++-..+.+
T Consensus       282 D~~~~~a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  282 DPRNAVANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             CCCchhhhchHHHHHHHHHHHHHHHH
Confidence            99988766665555555554444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.70  E-value=0.0047  Score=31.47  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHH
Q 033182           42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKI   73 (125)
Q Consensus        42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a   73 (125)
                      ++.++|.+|..+|++++|...++.++.+.++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            34445555555555555555555555544443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.67  E-value=0.0071  Score=44.39  Aligned_cols=96  Identities=20%  Similarity=0.121  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----C-CChHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELN-----P-TYMKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-----p-~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      -..+|.+.+.++.+. ++.+|+..+++++.+-     | .-++++.++|.+|... |++++|+..|+.|+.+|+.--. .
T Consensus        74 Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~  151 (282)
T PF14938_consen   74 AAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-P  151 (282)
T ss_dssp             HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--H
T ss_pred             HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-h
Confidence            345677888887665 9999999999998762     2 2367899999999999 9999999997777766642110 0


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           78 PSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        78 p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..-......++.+...+++..++..
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~  176 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIE  176 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHH
Confidence            0123355566666666666655544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.66  E-value=0.0069  Score=30.82  Aligned_cols=30  Identities=23%  Similarity=0.399  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALEL   35 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l   35 (125)
                      ..++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            467899999999999999999999999865

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.65  E-value=0.091  Score=34.37  Aligned_cols=88  Identities=27%  Similarity=0.369  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------C--------------ChHHHHHHHHHHHHchhHHHHHHhHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNP--------T--------------YMKALIRRAEAHEKLEHFEEAIAGIQD   65 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p--------~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~   65 (125)
                      .+...|......++.+.++..+++++.+-.        .              ...+...++..+...|+++.|+..   
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~---   84 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL---   84 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH---
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH---
Confidence            344446556677899999999999987731        1              134666688888899999999999   


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           66 LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        66 ~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                          +++++..+|-+..++..+-.++...++...+..
T Consensus        85 ----~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~  117 (146)
T PF03704_consen   85 ----LQRALALDPYDEEAYRLLMRALAAQGRRAEALR  117 (146)
T ss_dssp             ----HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ----HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence                999999999999999999999998888776655

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.64  E-value=0.0054  Score=47.77  Aligned_cols=65  Identities=23%  Similarity=0.287  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIV   69 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   69 (125)
                      ...+|-|+|+.|+-.|+|..|+..-+.-+.+...+      .+++.|+|.||.-+|+++.|+++|...+.+
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            35678899999999999999999877766665433      579999999999999999999995555554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.64  E-value=0.017  Score=44.28  Aligned_cols=76  Identities=20%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 033182           19 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKL   98 (125)
Q Consensus        19 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~   98 (125)
                      .++++.-++..++.++..|+++..++.+|..+.+.+.|.+|...       |+.++...|+. ..+..+++...++++..
T Consensus       307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~-------leaAl~~~~s~-~~~~~la~~~~~~g~~~  378 (400)
T COG3071         307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA-------LEAALKLRPSA-SDYAELADALDQLGEPE  378 (400)
T ss_pred             CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH-------HHHHHhcCCCh-hhHHHHHHHHHHcCChH
Confidence            45666666777777788899999999999999999999999999       99999988874 45778888888888766


Q ss_pred             HHHH
Q 033182           99 EKMK  102 (125)
Q Consensus        99 ~~~~  102 (125)
                      .+..
T Consensus       379 ~A~~  382 (400)
T COG3071         379 EAEQ  382 (400)
T ss_pred             HHHH
Confidence            5544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.61  E-value=0.023  Score=41.65  Aligned_cols=86  Identities=16%  Similarity=0.222  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------Ch-HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT------YM-KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      ...++.+.|.++.+.|+|++|+..|+++....-+      .. ..++..+.|++..|++..|...       +++....+
T Consensus       154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~-------~~~~~~~~  226 (282)
T PF14938_consen  154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA-------LERYCSQD  226 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH-------HHHHGTTS
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhC
Confidence            4567889999999999999999999998865311      23 3557888999999999999999       99999999


Q ss_pred             CCcHHH--HHHHHHHHHHHHHH
Q 033182           78 PSNNQA--KRTILRLQPLAEEK   97 (125)
Q Consensus        78 p~~~~~--~~~l~~~~~~~~~~   97 (125)
                      |+...+  ...+..+....++.
T Consensus       227 ~~F~~s~E~~~~~~l~~A~~~~  248 (282)
T PF14938_consen  227 PSFASSREYKFLEDLLEAYEEG  248 (282)
T ss_dssp             TTSTTSHHHHHHHHHHHHHHTT
T ss_pred             CCCCCcHHHHHHHHHHHHHHhC
Confidence            965443  33455555555443

>PLN03077 Protein ECB2; Provisional

Probab=96.58  E-value=0.028  Score=47.19  Aligned_cols=87  Identities=17%  Similarity=0.053  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      ..|..+..++.+.|++++|...+++. ...|+ +..|..+-.++...++.+.|...       .+++++++|++...+..
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~-------a~~l~~l~p~~~~~y~l  696 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELA-------AQHIFELDPNSVGYYIL  696 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH-------HHHHHhhCCCCcchHHH
Confidence            45666667777777777777666653 23443 45555555566666777776666       88889999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           87 ILRLQPLAEEKLEKMK  102 (125)
Q Consensus        87 l~~~~~~~~~~~~~~~  102 (125)
                      +..++...+++.+..+
T Consensus       697 l~n~ya~~g~~~~a~~  712 (857)
T PLN03077        697 LCNLYADAGKWDEVAR  712 (857)
T ss_pred             HHHHHHHCCChHHHHH
Confidence            9999988888776665

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.024  Score=41.64  Aligned_cols=70  Identities=17%  Similarity=0.252  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHH-hHHHHHHHHHHHHhhCCCcHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA-GIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ......+.|++.+++|++|....+.++.-+++++..+.|+-.+-..+|.-.++.. .       +.+....+|.++-+
T Consensus       208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~-------l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN-------LSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH-------HHHHHhcCCcchHH
Confidence            3456778888888888888888888888888888888888888888888877665 4       45555667775543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.55  E-value=0.086  Score=34.45  Aligned_cols=68  Identities=35%  Similarity=0.369  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH-HHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE-AHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      .....+...+..+...+++..++..+..++..++.........+. ++...|+++.|...       +.+++..+|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~~~~~~  161 (291)
T COG0457          93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL-------YEKALELDP  161 (291)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCC
Confidence            345566677777777777777777777777776666555555555 67777777777777       666666555

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.47  E-value=0.03  Score=45.93  Aligned_cols=64  Identities=8%  Similarity=-0.065  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      ...|..+..++...|+++.|...+++.+.++|++...|..+..+|.+.|++++|.+.       ++...+.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v-------~~~m~~~  557 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV-------VETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH-------HHHHHHc
Confidence            456888888888999999999999999999999999999999999999999999999       7766544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.38  E-value=0.05  Score=40.07  Aligned_cols=71  Identities=18%  Similarity=0.196  Sum_probs=61.1

Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      +++..|.-.|+..-.--|..+......+.|++.+|+|++|...       ++.++.-+|+++++..++-.+....+..
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l-------L~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL-------LEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH-------HHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            4577788888887775555688889999999999999999999       9999999999999999999888777755

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.35  E-value=0.024  Score=46.55  Aligned_cols=87  Identities=14%  Similarity=0.104  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      ..|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...       +++.++++|++...+..
T Consensus       463 ~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~-------~~~l~~~~p~~~~~y~~  533 (697)
T PLN03081        463 MHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLA-------AEKLYGMGPEKLNNYVV  533 (697)
T ss_pred             cchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHH-------HHHHhCCCCCCCcchHH
Confidence            35667777888888888888877653 2233 456788888888889999999888       99999999999888999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           87 ILRLQPLAEEKLEKMK  102 (125)
Q Consensus        87 l~~~~~~~~~~~~~~~  102 (125)
                      +..++...++..++.+
T Consensus       534 L~~~y~~~G~~~~A~~  549 (697)
T PLN03081        534 LLNLYNSSGRQAEAAK  549 (697)
T ss_pred             HHHHHHhCCCHHHHHH
Confidence            9999888887776665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.35  E-value=0.093  Score=44.12  Aligned_cols=85  Identities=15%  Similarity=0.114  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      .+..--|..+.++|+.++|...++..-...+++...+-.+-.||..++++++|...       |+++++.+|+ .+....
T Consensus        44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~-------Ye~~~~~~P~-eell~~  115 (932)
T KOG2053|consen   44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL-------YERANQKYPS-EELLYH  115 (932)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH-------HHHHHhhCCc-HHHHHH
Confidence            34445567777888888888777777777788888888888888888888888888       8888888888 555555


Q ss_pred             HHHHHHHHHHHHH
Q 033182           87 ILRLQPLAEEKLE   99 (125)
Q Consensus        87 l~~~~~~~~~~~~   99 (125)
                      +=.++-+.+....
T Consensus       116 lFmayvR~~~yk~  128 (932)
T KOG2053|consen  116 LFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHHHHHHHHH
Confidence            5455555544433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.31  E-value=0.089  Score=37.38  Aligned_cols=69  Identities=14%  Similarity=0.140  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhcCC------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFE-------ESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM   70 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~   70 (125)
                      ..+.++..+|++|...|+.+       .|...|++++....      +.....|.+|...++.|++++|..+       |
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~-------f  188 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRW-------F  188 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH-------H
Confidence            45678899999999998844       46666666665542      2367889999999999999999999       9


Q ss_pred             HHHHhhCCC
Q 033182           71 KKILEFDPS   79 (125)
Q Consensus        71 ~~a~~l~p~   79 (125)
                      .+++..-..
T Consensus       189 s~vi~~~~~  197 (214)
T PF09986_consen  189 SRVIGSKKA  197 (214)
T ss_pred             HHHHcCCCC
Confidence            999985433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.17  E-value=0.16  Score=34.56  Aligned_cols=83  Identities=13%  Similarity=0.027  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      ..+.....+-.+.++...+...+...-.+.|..+..-..-|..+...|+|.+|+..       |+.+.+-.|..+.+.-.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rl-------Lr~l~~~~~~~p~~kAL   83 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRL-------LRELEERAPGFPYAKAL   83 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHH-------HHHHhccCCCChHHHHH
Confidence            34555666666677778887777777778888888888888888888888888888       88777777777776666


Q ss_pred             HHHHHHHHHH
Q 033182           87 ILRLQPLAEE   96 (125)
Q Consensus        87 l~~~~~~~~~   96 (125)
                      +.-|....++
T Consensus        84 lA~CL~~~~D   93 (160)
T PF09613_consen   84 LALCLYALGD   93 (160)
T ss_pred             HHHHHHHcCC
Confidence            6666655553

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.16  E-value=0.14  Score=36.24  Aligned_cols=63  Identities=19%  Similarity=0.389  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182           10 SNRGICFLKLGKFEESIKECTKALE-LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~al~-l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +.+|....+.|++.+|...|.+++. +-.+++...+.++.++...+++..|...       ++...+-+|.
T Consensus        93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t-------Le~l~e~~pa  156 (251)
T COG4700          93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT-------LEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH-------HHHHhhcCCc
Confidence            4455555566666666666665542 2344555555555555555555555555       5555555553

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=0.34  Score=39.31  Aligned_cols=96  Identities=15%  Similarity=0.195  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------------------CC-ChHHHHHHHHHHHHch
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELN------------------------------PT-YMKALIRRAEAHEKLE   54 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~------------------------------p~-~~~~~~~~~~~~~~~~   54 (125)
                      .....-+|..+.++|+|++|+..|...++-+                              |+ ....+||.+.++...|
T Consensus       110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g  189 (652)
T KOG2376|consen  110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG  189 (652)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence            3456667888889999999999888875433                              22 3568899999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHhhCCCc-HH-------HHHHHHHHHHHHHHHHHHH
Q 033182           55 HFEEAIAGIQDLMIVMKKILEFDPSN-NQ-------AKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        55 ~~~~A~~~~~~~~~~~~~a~~l~p~~-~~-------~~~~l~~~~~~~~~~~~~~  101 (125)
                      +|.+|++.+++++.+.++-+..+-.+ .+       +...+.-++..+++..++.
T Consensus       190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            99999999899988888888766544 22       4555555666666554443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.13  E-value=0.066  Score=39.61  Aligned_cols=77  Identities=22%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +....++..++..+...++++.++..+++.+.++|-+-..|..+-.+|...|+...|+..|...-.++..-+-++|.
T Consensus       150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~  226 (280)
T COG3629         150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPA  226 (280)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence            44567788889999999999999999999999999999999999999999999999999944444433333334444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.03  E-value=0.059  Score=35.20  Aligned_cols=65  Identities=26%  Similarity=0.459  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCC----ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALEL-------NPT----YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   72 (125)
                      .+.-|+-.++-++..+|+|++++...++++..       +.+    +..+.++++.++..+|+.++|+..       |+.
T Consensus        53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~-------fr~  125 (144)
T PF12968_consen   53 FDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKE-------FRM  125 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHH-------HHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHH-------HHH
Confidence            45678889999999999999999988888854       333    456778899999999999999999       766


Q ss_pred             HHh
Q 033182           73 ILE   75 (125)
Q Consensus        73 a~~   75 (125)
                      +-+
T Consensus       126 agE  128 (144)
T PF12968_consen  126 AGE  128 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.97  E-value=0.069  Score=43.11  Aligned_cols=62  Identities=23%  Similarity=0.333  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +++..+.|+++.|+.++|+..+.   .+++.+.......|+.++++|+|++|.+.       |+...+-+.+
T Consensus        81 ~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdi-------Y~~L~kn~~d  142 (652)
T KOG2376|consen   81 FFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDI-------YQHLAKNNSD  142 (652)
T ss_pred             hhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCc
Confidence            34789999999999999999887   77888888999999999999999999999       6666554443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.93  E-value=0.32  Score=34.40  Aligned_cols=71  Identities=10%  Similarity=0.152  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ++.++..++.+.+..+++..|...+++..+.+|.  .+...+.+|.++-.+|.+++|...       |+.++.--|+...
T Consensus       123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa-------fe~a~~~ypg~~a  195 (251)
T COG4700         123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA-------FEVAISYYPGPQA  195 (251)
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH-------HHHHHHhCCCHHH
Confidence            4567889999999999999999999999999984  578999999999999999999999       9999998888543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.91  E-value=0.024  Score=42.79  Aligned_cols=80  Identities=15%  Similarity=0.075  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR-RAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      .++++|..-+..-.+.+-|.+--..|.++++.+|.++..|.- .+.-+..-++++.+...       |.+++++||.++.
T Consensus       105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~-------f~~glR~N~~~p~  177 (435)
T COG5191         105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAM-------FLKGLRMNSRSPR  177 (435)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHH-------HHhhhccCCCCch
Confidence            456788888888888888999999999999999999999987 66677788999999999       9999999999998


Q ss_pred             HHHHHHHH
Q 033182           83 AKRTILRL   90 (125)
Q Consensus        83 ~~~~l~~~   90 (125)
                      +|...-++
T Consensus       178 iw~eyfr~  185 (435)
T COG5191         178 IWIEYFRM  185 (435)
T ss_pred             HHHHHHHH
Confidence            77654443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.88  E-value=0.018  Score=29.69  Aligned_cols=27  Identities=33%  Similarity=0.362  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALE   34 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~   34 (125)
                      +|..+|.+.+..++|+.|+.+|.+++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344445555555555555555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.71  E-value=0.21  Score=29.69  Aligned_cols=52  Identities=17%  Similarity=0.138  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQ   91 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~   91 (125)
                      +..+..+|.-+-+.|++.+|+.+|+.+-.++.+++...|+++.-......+.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~   57 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMIN   57 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            4556777888889999999999999999999999999999877555444443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.71  E-value=0.31  Score=31.70  Aligned_cols=65  Identities=35%  Similarity=0.475  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPT-YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      .+..++..+...+++..++..+.+++...+. ....+..++.++...+.++.|...       +..++...|.
T Consensus       169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~~~~~~~  234 (291)
T COG0457         169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY-------YEKALELDPD  234 (291)
T ss_pred             HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH-------HHHHHhhCcc
Confidence            3344444455566666666666666666666 566666666666666666666666       6666666665

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.68  E-value=0.051  Score=42.48  Aligned_cols=57  Identities=25%  Similarity=0.558  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      +.+--.+..||.++++...|+....+.|-++|.++.-+++.|.|...+.+|.+|.+.
T Consensus       228 SfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS  284 (569)
T PF15015_consen  228 SFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS  284 (569)
T ss_pred             HHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            445567899999999999999999999999999999999999999999999999886

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.68  E-value=0.037  Score=28.50  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182           41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   72 (125)
                      .+|..+|.+-+..++|++|+.++++++.+.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999995555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.061  Score=41.08  Aligned_cols=59  Identities=19%  Similarity=0.132  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      +-+-+.--.+.+..+.|-|.+|++..++++++||.+..+.+.++.++.-.+++.++.+.
T Consensus       173 ~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eF  231 (491)
T KOG2610|consen  173 CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEF  231 (491)
T ss_pred             HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHH
Confidence            33444555788888999999999999999999999999999999999999999999876

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.022  Score=42.86  Aligned_cols=72  Identities=18%  Similarity=0.229  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      .+....|.|...++.|+|+.|++-|..+++..--++-.-|+.+.|+...++|+.|++.+   -.|.+|.++.+|.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~i---SEIieRG~r~HPE  214 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHI---SEIIERGIRQHPE  214 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH---HHHHHhhhhcCCc
Confidence            34567788999999999999999999999999888889999999999999999999981   1123444555553

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=95.63  E-value=0.12  Score=42.52  Aligned_cols=91  Identities=13%  Similarity=0.006  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      =..+|.-+|..+-++++.+.|-..|...++.=|.....|..++..-.+.|+.-.|...       +.++.-.||++...+
T Consensus       684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i-------ldrarlkNPk~~~lw  756 (913)
T KOG0495|consen  684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI-------LDRARLKNPKNALLW  756 (913)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH-------HHHHHhcCCCcchhH
Confidence            3568899999999999999999999999999999999999999999999999999999       999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ....++..+.+...++..
T Consensus       757 le~Ir~ElR~gn~~~a~~  774 (913)
T KOG0495|consen  757 LESIRMELRAGNKEQAEL  774 (913)
T ss_pred             HHHHHHHHHcCCHHHHHH
Confidence            777777666665554443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.25  Score=40.63  Aligned_cols=76  Identities=18%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      .++++|-+.-+++..+|..++++|...++.=|      ++++...+++.||..+.+.+.|.+.       ++.|-+.+|.
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~-------~~EAE~~d~~  426 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEV-------YQEAEEVDRQ  426 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHhhccc
Confidence            45677888889999999999999999987755      3478899999999999999999999       9999999988


Q ss_pred             cHHHHHHHH
Q 033182           80 NNQAKRTIL   88 (125)
Q Consensus        80 ~~~~~~~l~   88 (125)
                      ++-......
T Consensus       427 ~~l~q~~~~  435 (872)
T KOG4814|consen  427 SPLCQLLML  435 (872)
T ss_pred             cHHHHHHHH
Confidence            766544443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.57  E-value=0.38  Score=32.72  Aligned_cols=83  Identities=13%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .|..+.+-..-|..++..|+|.+|+..++.+....|..+-+--.++.|+..+++.+.=.-.        ..+++- +.++
T Consensus        40 RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A--------~evle~-~~d~  110 (160)
T PF09613_consen   40 RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYA--------DEVLES-GADP  110 (160)
T ss_pred             CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHH--------HHHHhc-CCCh
Confidence            4666777788899999999999999999999999999999999999999999998765433        234443 3356


Q ss_pred             HHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPL   93 (125)
Q Consensus        82 ~~~~~l~~~~~~   93 (125)
                      .+......+...
T Consensus       111 ~a~~Lv~~Ll~~  122 (160)
T PF09613_consen  111 DARALVRALLAR  122 (160)
T ss_pred             HHHHHHHHHHHh
Confidence            655555555433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.57  E-value=0.12  Score=40.94  Aligned_cols=75  Identities=17%  Similarity=0.082  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT----YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      |..+-..+..|..+...|+.++|+..+++++.....    ..-+++.+|-++.-+.+|++|...       +.+..+.+.
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~-------f~~L~~~s~  336 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY-------FLRLLKESK  336 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH-------HHHHHhccc
Confidence            445667889999999999999999999998854433    345889999999999999999999       998888655


Q ss_pred             CcHHHH
Q 033182           79 SNNQAK   84 (125)
Q Consensus        79 ~~~~~~   84 (125)
                      -.+..+
T Consensus       337 WSka~Y  342 (468)
T PF10300_consen  337 WSKAFY  342 (468)
T ss_pred             cHHHHH
Confidence            444433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.49  E-value=0.15  Score=31.23  Aligned_cols=56  Identities=21%  Similarity=0.447  Sum_probs=44.0

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCC---------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182           15 CFLKLGKFEESIKECTKALELNP---------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus        15 ~~~~~~~~~~A~~~~~~al~l~p---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      -..+.++|.+|++.+.+.+..-.         ....+..++|..+...|++++|+..       +++++++.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~-------l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQA-------LEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHH
Confidence            34568999999888877765532         1256789999999999999999999       77777764

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.41  E-value=0.11  Score=42.29  Aligned_cols=78  Identities=13%  Similarity=0.161  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI   87 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l   87 (125)
                      ...++++..++.|-.-.|...+.+++.++..-+-.++-+|.++..+.+.+.|++.       |+.|+.++|+++.....|
T Consensus       644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~-------~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA-------FRQALKLTTKCPECENSL  716 (886)
T ss_pred             cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH-------HHHHHhcCCCChhhHHHH
Confidence            3678899999988888899999999999988899999999999999999999999       999999999999887777


Q ss_pred             HHHHH
Q 033182           88 LRLQP   92 (125)
Q Consensus        88 ~~~~~   92 (125)
                      ..+..
T Consensus       717 ~~i~c  721 (886)
T KOG4507|consen  717 KLIRC  721 (886)
T ss_pred             HHHHH
Confidence            66654

>PLN03077 Protein ECB2; Provisional

Probab=95.39  E-value=0.26  Score=41.48  Aligned_cols=63  Identities=13%  Similarity=0.019  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE   75 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~   75 (125)
                      +.+|..+-.++..-++.+.+....+++++++|+++..|..++.+|...|+|++|.+.       .+...+
T Consensus       657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v-------r~~M~~  719 (857)
T PLN03077        657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV-------RKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH-------HHHHHH
Confidence            456666666777788999999999999999999999999999999999999999988       665544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.39  E-value=0.37  Score=35.41  Aligned_cols=70  Identities=11%  Similarity=0.007  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            5 RSICHSNRGICFLKL-GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ...+|...|..-... ++.+.|...|+.+++.-|.+...|......+...++.+.|...       |++++..-|...
T Consensus        34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~l-------fer~i~~l~~~~  104 (280)
T PF05843_consen   34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARAL-------FERAISSLPKEK  104 (280)
T ss_dssp             -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH-------HHHHCCTSSCHH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHH-------HHHHHHhcCchh
Confidence            345677777775564 4566699999999998898888888888888899998888888       888888776655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.29  E-value=0.14  Score=36.86  Aligned_cols=62  Identities=15%  Similarity=0.022  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 033182           25 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPL   93 (125)
Q Consensus        25 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~   93 (125)
                      |..+|.+|+.+.|.+...|..+|......|+.-.|+=+       |-|++-...-.+.+..+|..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~-------y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYY-------YIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHH-------HHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHH-------HHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999       777776554457788888888776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.28  E-value=0.082  Score=26.83  Aligned_cols=33  Identities=18%  Similarity=0.153  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHH--HHHHHhcCCCC
Q 033182            7 ICHSNRGICFLKLGKFEESIKE--CTKALELNPTY   39 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~--~~~al~l~p~~   39 (125)
                      ..++..|..+..+|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4577888888888888888888  44777777654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.20  E-value=0.44  Score=35.03  Aligned_cols=85  Identities=11%  Similarity=-0.082  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-chhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK-LEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      -+|........+.+..+.|-..|.+|.+-++.....|...|..-.. .++.+.|...       |+++++.-|.+...+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~I-------fe~glk~f~~~~~~~~   74 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKI-------FERGLKKFPSDPDFWL   74 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHH-------HHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHH-------HHHHHHHCCCCHHHHH
Confidence            3677778888888889999999999997777788999999999666 5666669999       9999999999988877


Q ss_pred             HHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKL   98 (125)
Q Consensus        86 ~l~~~~~~~~~~~   98 (125)
                      ...+....+++..
T Consensus        75 ~Y~~~l~~~~d~~   87 (280)
T PF05843_consen   75 EYLDFLIKLNDIN   87 (280)
T ss_dssp             HHHHHHHHTT-HH
T ss_pred             HHHHHHHHhCcHH
Confidence            6666666555443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.20  E-value=0.35  Score=42.05  Aligned_cols=55  Identities=7%  Similarity=-0.020  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHchhHHHHHHh
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELN-PTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      .|..+..+|.+.|++++|...|+.....+ +.+...|..+...|.+.|++++|...
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l  636 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI  636 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            44445555555555665655555555554 33445555555555555655555555

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=95.11  E-value=0.26  Score=36.98  Aligned_cols=74  Identities=20%  Similarity=0.151  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      ...+...+..|.+.|.+.+|+....+++.+||-+...+..+-..+..+|+--+|...|++---++++-+.++-+
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd  352 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD  352 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence            34555677888899999999999999999999999999999999999999999999966655555555555544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=0.19  Score=38.84  Aligned_cols=72  Identities=19%  Similarity=0.177  Sum_probs=60.7

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182           11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR   89 (125)
Q Consensus        11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~   89 (125)
                      .++..+...-.|.+|+..|.+++.-+|+..-..-.++.||.++.-|+-+...       +.-.++..|+.+-+......
T Consensus       156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev-------l~vYL~q~pdStiA~NLkac  227 (557)
T KOG3785|consen  156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV-------LKVYLRQFPDSTIAKNLKAC  227 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH-------HHHHHHhCCCcHHHHHHHHH
Confidence            3455566678899999999999999999999999999999999999999888       88888988988776554443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.03  E-value=0.29  Score=29.96  Aligned_cols=38  Identities=13%  Similarity=0.170  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY   39 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~   39 (125)
                      +|.+..+.+.++..++..|++++|+..+-.+++.++++
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            47788899999999999999999999999999999877

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.87  E-value=0.18  Score=39.92  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      +....+++.+|++++-+.+|++|...+....+.+. ..+-..|..|.|+..+++.+.+....+.+..+|.++-.+-
T Consensus       302 Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  302 QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999998654 3455667788999999999333332222222276665543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.80  E-value=0.81  Score=35.50  Aligned_cols=89  Identities=21%  Similarity=0.210  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      .-.+|.|++..+.+.-+|..++.+....+.+....     ...+.-+|.++..++.|+.+++.       |+.+++....
T Consensus        82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Les-------fe~A~~~A~~  154 (518)
T KOG1941|consen   82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALES-------FEKALRYAHN  154 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHH-------HHHHHHHhhc
Confidence            45678899999999999999999988888875333     46778899999999999999999       7777766443


Q ss_pred             cH------HHHHHHHHHHHHHHHHHHH
Q 033182           80 NN------QAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        80 ~~------~~~~~l~~~~~~~~~~~~~  100 (125)
                      +.      .+...|+++.-.+++...+
T Consensus       155 ~~D~~LElqvcv~Lgslf~~l~D~~Ka  181 (518)
T KOG1941|consen  155 NDDAMLELQVCVSLGSLFAQLKDYEKA  181 (518)
T ss_pred             cCCceeeeehhhhHHHHHHHHHhhhHH
Confidence            32      2667788887777766544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.78  E-value=0.19  Score=40.04  Aligned_cols=55  Identities=24%  Similarity=0.297  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHchhHHHHHHh
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      +-..+|.|..+.|+..+|++.++..++..|.  +...+.++-.++..++.|.++...
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence            3457899999999999999999999998875  567999999999999999999887

The molecular function of this protein is uncertain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.75  E-value=0.76  Score=35.53  Aligned_cols=90  Identities=14%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ...+|.--+.+--++|+++.+-.+..++-++.+ +..-....++..+...|+++.|...       ...+++..|.++.+
T Consensus       117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~-------v~~ll~~~pr~~~v  189 (400)
T COG3071         117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN-------VDQLLEMTPRHPEV  189 (400)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH-------HHHHHHhCcCChHH
Confidence            345566666777778888888888888888833 3456677888888888888888888       88888888998888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~  101 (125)
                      .....+++...+++.+-.
T Consensus       190 lrLa~r~y~~~g~~~~ll  207 (400)
T COG3071         190 LRLALRAYIRLGAWQALL  207 (400)
T ss_pred             HHHHHHHHHHhccHHHHH
Confidence            888888888777765443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.59  E-value=0.3  Score=41.29  Aligned_cols=78  Identities=13%  Similarity=0.153  Sum_probs=68.4

Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           18 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        18 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      ..++|..|...+.+.++..|+..-+.-..|.++.++|+.++|...       ++..-..-+++..+...+.-+++.++.-
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~-------Le~~~~~~~~D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKL-------LEALYGLKGTDDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHH-------HhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence            478999999999999999999999999999999999999999977       7666666677888999999999888877


Q ss_pred             HHHHH
Q 033182           98 LEKMK  102 (125)
Q Consensus        98 ~~~~~  102 (125)
                      ++...
T Consensus        94 d~~~~   98 (932)
T KOG2053|consen   94 DEAVH   98 (932)
T ss_pred             hHHHH
Confidence            66554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.41  Score=36.25  Aligned_cols=55  Identities=18%  Similarity=0.238  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      .+.-+|.||....+|++|..+|++.-.+.|...+..+..++.+++-+.+.+|+..
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            3455666666666666666666666666666666666666666666666666554

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=94.54  E-value=0.54  Score=27.96  Aligned_cols=42  Identities=19%  Similarity=0.314  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ..+...|.-.-..|+|++|+..|+.++.+|..+++..|+...
T Consensus         7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~   48 (77)
T cd02683           7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAK   48 (77)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence            345566677778899999999999999999999999987554

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.49  E-value=0.63  Score=37.26  Aligned_cols=85  Identities=11%  Similarity=0.053  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      .....|...|.--..++++..|-..+++|+.-|..+...|...+.+-++..+.-.|...       +.+|+.+-|.....
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv-------~dRAvt~lPRVdql  143 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNV-------WDRAVTILPRVDQL  143 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHH-------HHHHHHhcchHHHH
Confidence            44556666777667778888888888888888888888888888888888888888888       88888888887776


Q ss_pred             HHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAE   95 (125)
Q Consensus        84 ~~~l~~~~~~~~   95 (125)
                      +.-..-+...++
T Consensus       144 WyKY~ymEE~Lg  155 (677)
T KOG1915|consen  144 WYKYIYMEEMLG  155 (677)
T ss_pred             HHHHHHHHHHhc
Confidence            665555554444

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.46  E-value=0.75  Score=40.08  Aligned_cols=56  Identities=7%  Similarity=-0.121  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHh
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      ..|..+...|.+.|++++|+..|+.....+. .+...|..+..++.+.|++++|.+.
T Consensus       508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l  564 (1060)
T PLN03218        508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV  564 (1060)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3344444444444444444444444433321 1233444444444444444444444

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.40  E-value=0.25  Score=41.04  Aligned_cols=84  Identities=32%  Similarity=0.562  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            4 LRSICHSNRGICFLKL--GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      -.++++.|.+.|++++  ++|..++..++-++...|...++++.++.+|..++.++-|++.       +.-....+|++.
T Consensus        89 ~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rd-------l~i~~~~~p~~~  161 (748)
T KOG4151|consen   89 VVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRD-------LRIVEKMDPSNV  161 (748)
T ss_pred             hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHhcCCCCcc
Confidence            3567788999999885  6899999999999999999999999999999999999999999       777788999987


Q ss_pred             HHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLA   94 (125)
Q Consensus        82 ~~~~~l~~~~~~~   94 (125)
                      ++.....+++..+
T Consensus       162 ~~~eif~elk~ll  174 (748)
T KOG4151|consen  162 SASEIFEELKGLL  174 (748)
T ss_pred             hHHHHHHHHHHHH
Confidence            7666444444444

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.32  E-value=0.2  Score=25.35  Aligned_cols=23  Identities=22%  Similarity=0.065  Sum_probs=19.9

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHh
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      ++.++.+|-.+..+|++++|+..
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHH
Confidence            35788999999999999999999

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=94.16  E-value=0.78  Score=33.18  Aligned_cols=61  Identities=13%  Similarity=0.127  Sum_probs=55.6

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           15 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        15 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      .+.+.+...+|+...+.-++.+|.+..+.+.+-..++-.|+|++|...       ++-+-++.|++..
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Q-------l~l~a~l~p~~t~   70 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQ-------LNLAATLSPQDTV   70 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHH-------HHHHhhcCcccch
Confidence            456778899999999999999999999999999999999999999999       9999999997543

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=94.02  E-value=0.63  Score=26.71  Aligned_cols=40  Identities=18%  Similarity=0.325  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182           42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus        42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .+...|.-.-..|++++|+..|+.|+.+|..+++..|+..
T Consensus         7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~   46 (69)
T PF04212_consen    7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPE   46 (69)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            4556677777899999999999999999999999987533

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.99  E-value=0.34  Score=40.67  Aligned_cols=64  Identities=17%  Similarity=0.072  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELN------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +.+++.++...|++++|...+++++...      +....++..+|.++..+|+.++|...       +.+++++...
T Consensus       694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~-------L~~Al~la~~  763 (903)
T PRK04841        694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV-------LLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHhCc
Confidence            5678999999999999999999998763      23456888999999999999999999       7777776544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.73  E-value=0.1  Score=24.22  Aligned_cols=22  Identities=23%  Similarity=-0.025  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHchhHHHHHHh
Q 033182           41 KALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      .+++.+|.++..+|++++|...
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~   23 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERL   23 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHH
Confidence            4667788888888888888776

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.66  E-value=1.5  Score=36.96  Aligned_cols=66  Identities=11%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM   70 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~   70 (125)
                      ...+...+|.++...|++++|...+++++.....      ...++.++|.++...|++++|...++.++.+.
T Consensus       490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3456678889999999999999999998866332      13567788999999999999999955554443

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=93.61  E-value=0.83  Score=26.72  Aligned_cols=39  Identities=13%  Similarity=0.236  Sum_probs=31.6

Q ss_pred             HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ...|...-..|++++|+..|..|+..|..++..+|+...
T Consensus        12 i~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~   50 (77)
T smart00745       12 ISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKR   50 (77)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence            445566666899999999999999999999999887433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.60  E-value=1.5  Score=29.61  Aligned_cols=80  Identities=9%  Similarity=-0.058  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL   88 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~   88 (125)
                      ...........++...+.......-.+-|+.+..-..-|-.+...|+|.+|+..       |+...+-.|..+-..-.+.
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rv-------lr~l~~~~~~~p~~kAL~A   85 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARI-------LRELLSSAGAPPYGKALLA   85 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHH-------HHhhhccCCCchHHHHHHH
Confidence            334444444567777777777777777787777777777788888888888777       7777666666665555555


Q ss_pred             HHHHHHH
Q 033182           89 RLQPLAE   95 (125)
Q Consensus        89 ~~~~~~~   95 (125)
                      -|....+
T Consensus        86 ~CL~al~   92 (153)
T TIGR02561        86 LCLNAKG   92 (153)
T ss_pred             HHHHhcC
Confidence            5555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.42  E-value=0.96  Score=33.82  Aligned_cols=52  Identities=21%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182           11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus        11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      .-+......|++.+|...+..++..+|++..+...++.|+...|+.+.|...
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~i  190 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAI  190 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHH
Confidence            3455667789999999999999999999999999999999999999887765

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.41  E-value=0.95  Score=26.79  Aligned_cols=33  Identities=18%  Similarity=0.064  Sum_probs=26.7

Q ss_pred             HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182           48 EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus        48 ~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .-.-..|+|++|...|..++.+|..+++-+++.
T Consensus        14 ve~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~   46 (75)
T cd02677          14 LEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSP   46 (75)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCH
Confidence            333444999999999999999999999887663

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.38  E-value=0.14  Score=23.74  Aligned_cols=24  Identities=13%  Similarity=0.043  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECT   30 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~   30 (125)
                      .+.+++|..+..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            567899999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.21  E-value=0.79  Score=37.14  Aligned_cols=78  Identities=21%  Similarity=0.169  Sum_probs=65.8

Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch---hHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182           18 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE---HFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA   94 (125)
Q Consensus        18 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~   94 (125)
                      -.+.+..|+.+|.+++..-|.....+.+++.++++.+   .--.|+.+       ...++++||....++..+.++...+
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrD-------ch~Alrln~s~~kah~~la~aL~el  458 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRD-------CHVALRLNPSIQKAHFRLARALNEL  458 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHh-------HHhhccCChHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999998754   44567777       8889999999999999999998888


Q ss_pred             HHHHHHHH
Q 033182           95 EEKLEKMK  102 (125)
Q Consensus        95 ~~~~~~~~  102 (125)
                      ....++..
T Consensus       459 ~r~~eal~  466 (758)
T KOG1310|consen  459 TRYLEALS  466 (758)
T ss_pred             hhHHHhhh
Confidence            87766654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.15  E-value=2.5  Score=30.92  Aligned_cols=91  Identities=14%  Similarity=0.129  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHH-HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKAL-IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      -..|+...+..--+.++|..|+..|+++....-++      ++.| +..|.|++...+.-.+...       +++..+++
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~A-------Leky~~~d  225 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRA-------LEKYQELD  225 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHH-------HHHHHhcC
Confidence            34566777777778999999999999987765444      3333 4567888887888888888       88889999


Q ss_pred             CCcHHHH--HHHHHHHHHHHHHHHHHH
Q 033182           78 PSNNQAK--RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        78 p~~~~~~--~~l~~~~~~~~~~~~~~~  102 (125)
                      |...+++  ..+.++...+++.+...-
T Consensus       226 P~F~dsREckflk~L~~aieE~d~e~f  252 (288)
T KOG1586|consen  226 PAFTDSRECKFLKDLLDAIEEQDIEKF  252 (288)
T ss_pred             CcccccHHHHHHHHHHHHHhhhhHHHH
Confidence            9876644  456777777776655443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=93.11  E-value=0.61  Score=31.07  Aligned_cols=52  Identities=19%  Similarity=0.129  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA   59 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A   59 (125)
                      ....++...+..|+|..|....+.++..+|++..+...++.++..+|.-.+.
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~  123 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN  123 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            3456777888899999999999999999999999999999999888766443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.08  E-value=1.5  Score=32.50  Aligned_cols=77  Identities=19%  Similarity=0.155  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHH----------HHHhHHHH
Q 033182            3 ELRSICHSNRGICFLKL------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE----------AIAGIQDL   66 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~----------A~~~~~~~   66 (125)
                      +..+.++..+|.-....      +++++++..|.+++.++|.+.++|+..|..+...-..+.          ...++..+
T Consensus       249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  328 (352)
T PF02259_consen  249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQA  328 (352)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHH
Confidence            34566777777777777      789999999999999999999999999998876543332          12223334


Q ss_pred             HHHHHHHHhhCCC
Q 033182           67 MIVMKKILEFDPS   79 (125)
Q Consensus        67 ~~~~~~a~~l~p~   79 (125)
                      +.=|-+++...|+
T Consensus       329 i~~y~~al~~~~~  341 (352)
T PF02259_consen  329 IEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHhhCCC
Confidence            4447788887776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.97  E-value=2.6  Score=33.36  Aligned_cols=58  Identities=12%  Similarity=0.120  Sum_probs=51.2

Q ss_pred             HHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033182           45 RRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKL  109 (125)
Q Consensus        45 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  109 (125)
                      .+..||.++++.+-|+..       --+.+-++|.+.-.+...+-+.+.++++.++.+..++..+
T Consensus       233 klv~CYL~~rkpdlALnh-------~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNH-------SHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             HHHHhhhhcCCCchHHHH-------HhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999       8899999999999999999999999999988885555544

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.63  E-value=1.2  Score=26.06  Aligned_cols=41  Identities=17%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      .+...|.-.-..|+|++|+..|..|+..|..+++.+|+...
T Consensus         8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~   48 (75)
T cd02678           8 ELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKS   48 (75)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence            34555666778899999999999999999999999886433

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.38  E-value=0.41  Score=32.29  Aligned_cols=59  Identities=10%  Similarity=-0.054  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI   60 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~   60 (125)
                      .|....+-..-|..++..|+|.+|+..++.+..-.+..+-+.-.++.|+..+|+.+.-.
T Consensus        40 rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~   98 (153)
T TIGR02561        40 RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV   98 (153)
T ss_pred             CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence            34555566677899999999999999999999999998988889999999999886654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.36  E-value=1.1  Score=35.87  Aligned_cols=54  Identities=20%  Similarity=0.183  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHH
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS--NNQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~~~~~  100 (125)
                      +-+..++|.|..++|+.++|+++       ++..++.+|.  +-.++.+|.++...++...+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~-------~rdLlke~p~~~~l~IrenLie~LLelq~Yad~  314 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKM-------FRDLLKEFPNLDNLNIRENLIEALLELQAYADV  314 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHH-------HHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence            44667899999999999999999       9999988775  455777777766555544333

The molecular function of this protein is uncertain.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.33  E-value=3.4  Score=32.28  Aligned_cols=69  Identities=14%  Similarity=0.301  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH--HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA--EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +...+.+|..|.+|+.+++|..|++.|...+..        ..+.  ..+.+..+++.-.+..++..-++--++.+.|.
T Consensus       161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y--------i~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLY--------IQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             chheehHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            456788999999999999999999999887632        2222  23344455555555555555557778888886

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.25  E-value=3.8  Score=30.75  Aligned_cols=62  Identities=23%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 033182           22 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRL   90 (125)
Q Consensus        22 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~   90 (125)
                      .+.-+..+++|++.+|++.+.+..+-.+..+...-+...+.       +++++..+|++...+....+.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~-------we~~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK-------WEELLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHCCCChHHHHHHHHH
Confidence            45677889999999999999999999999998888888888       999999999988776655444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.21  E-value=1.9  Score=31.62  Aligned_cols=56  Identities=20%  Similarity=0.282  Sum_probs=45.9

Q ss_pred             HHhcCHHHHHHHHHHHHhc----CCCC----hHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHHH
Q 033182           17 LKLGKFEESIKECTKALEL----NPTY----MKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus        17 ~~~~~~~~A~~~~~~al~l----~p~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~   72 (125)
                      .+.|+++.|.-++.++-.+    +|+.    ...+|+.|......+ ++++|+.+++++..+++.
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~   68 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK   68 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence            3579999999999987554    4443    568899999999999 999999997888777755

It is also involved in sporulation [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.12  E-value=2.3  Score=30.09  Aligned_cols=52  Identities=12%  Similarity=0.103  Sum_probs=27.3

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHh
Q 033182           11 NRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus        11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      .++..+...|++++|+..+..++....+   ..-+-.|++.++..+|.+++|+..
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~  148 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT  148 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3445555556666666666655544322   133445555555555555555554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.94  E-value=2.8  Score=31.44  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=54.0

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHchh-----HHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           27 KECTKALELNPTYMKALIRRAEAHEKLEH-----FEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        27 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      ..+++.++-+|.+..+|..+....-..-.     ........+.-+-+|++|++-+|++.......-++...+...
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~   81 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS   81 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence            45788999999999999999988776654     333333466777779999999999888777766666655433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.70  E-value=2.8  Score=33.39  Aligned_cols=49  Identities=10%  Similarity=0.056  Sum_probs=44.5

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182           13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      |...+-.|+|..+........+.+| .+.++..+|.|++...+|++|-.+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~  517 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY  517 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4455668999999999999999999 799999999999999999999877

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.59  E-value=1.1  Score=34.77  Aligned_cols=67  Identities=18%  Similarity=0.307  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELN------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM   70 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~   70 (125)
                      .+....+.++.++..+|....|.+.++.+.++.      |..+....-+|.+|+..|+.+.|-.-|+.++-+.
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            456678899999999999999999999987774      5667888889999999999999999966666554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.58  E-value=2.3  Score=32.65  Aligned_cols=74  Identities=18%  Similarity=0.186  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------C------------CCC---hHHHHHHHHHHHHc
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL--------------N------------PTY---MKALIRRAEAHEKL   53 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------------~------------p~~---~~~~~~~~~~~~~~   53 (125)
                      |.....+..++.++..+|+++.|....++|+-.              +            +.|   ..+.++....+...
T Consensus        37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R  116 (360)
T PF04910_consen   37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR  116 (360)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence            556778889999999999999999999988521              1            112   35778889999999


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHhhCCC-cHHH
Q 033182           54 EHFEEAIAGIQDLMIVMKKILEFDPS-NNQA   83 (125)
Q Consensus        54 ~~~~~A~~~~~~~~~~~~~a~~l~p~-~~~~   83 (125)
                      |.+.-|.++       .+-.+.+||. ++-.
T Consensus       117 G~~rTAlE~-------~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen  117 GCWRTALEW-------CKLLLSLDPDEDPLG  140 (360)
T ss_pred             CcHHHHHHH-------HHHHHhcCCCCCcch
Confidence            999999999       9999999998 6553

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.43  E-value=1.8  Score=25.23  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182           44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus        44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ...|.-.-..|+|++|+..|..|+..|..++..+|+..
T Consensus        10 ~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~   47 (75)
T cd02656          10 IKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPK   47 (75)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            44455566679999999999999999999999887743

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.26  E-value=4  Score=31.57  Aligned_cols=86  Identities=10%  Similarity=-0.022  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHH---chhHHHHHHhHHHHHHHHHH-HHhh
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALEL----NPTYMKALIRRAEAHEK---LEHFEEAIAGIQDLMIVMKK-ILEF   76 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l----~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~~-a~~l   76 (125)
                      .+....++-..|....+|+.-++..+..-.+    -++.....+.+|.++-+   .|+.++|+..       +.. ....
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i-------l~~~l~~~  212 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI-------LLPVLESD  212 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH-------HHHHHhcc
Confidence            3455667888899999999999988887776    35667788889999998   9999999999       877 4455


Q ss_pred             CCCcHHHHHHHHHHHHHHHHH
Q 033182           77 DPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        77 ~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      ++.+++++-.++++++.+-..
T Consensus       213 ~~~~~d~~gL~GRIyKD~~~~  233 (374)
T PF13281_consen  213 ENPDPDTLGLLGRIYKDLFLE  233 (374)
T ss_pred             CCCChHHHHHHHHHHHHHHHH
Confidence            678899999999999877543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.21  E-value=2.5  Score=34.44  Aligned_cols=75  Identities=19%  Similarity=0.090  Sum_probs=60.8

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182           12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQ   91 (125)
Q Consensus        12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~   91 (125)
                      ++..+...+....+.-..+.++..+|++..++.+++.+....|....+...      +...+....|++.....-+.+++
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~  146 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD------ISEIAEWLSPDNAEFLGHLIRFY  146 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH------HHHHHHhcCcchHHHHhhHHHHH
Confidence            677777788888888999999999999999999999999988887777665      14448888999988777764444


Q ss_pred             H
Q 033182           92 P   92 (125)
Q Consensus        92 ~   92 (125)
                      +
T Consensus       147 ~  147 (620)
T COG3914         147 Q  147 (620)
T ss_pred             H
Confidence            3

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.07  E-value=7  Score=31.58  Aligned_cols=56  Identities=25%  Similarity=0.207  Sum_probs=45.5

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182           15 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus        15 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      .-.++++|+..-..|++-+.-+|.+-.+|...|..-..+|+.+.|...       |+-|++..
T Consensus       446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRai-------felAi~qp  501 (677)
T KOG1915|consen  446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAI-------FELAISQP  501 (677)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHH-------HHHHhcCc
Confidence            344577888888888888888888888888888888888888888888       87777744

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.92  E-value=0.53  Score=31.37  Aligned_cols=40  Identities=23%  Similarity=0.347  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALI   44 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   44 (125)
                      +-.+.+-++..+.+.++|+.+.++.+..+..+|+|..+.-
T Consensus        70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3457788899999999999999999999999999988754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.87  E-value=3.4  Score=31.00  Aligned_cols=85  Identities=20%  Similarity=0.227  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------------------HHhcCCCChHHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTK----------------------------------ALELNPTYMKALIRRAEA   49 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~----------------------------------al~l~p~~~~~~~~~~~~   49 (125)
                      ..+.+-..++.||...|+++.|...+..                                  .+..||++..+.+.++..
T Consensus       166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~  245 (304)
T COG3118         166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQ  245 (304)
T ss_pred             ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3455666778888888888665544433                                  234467788888888888


Q ss_pred             HHHchhHHHHHHhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHH
Q 033182           50 HEKLEHFEEAIAGIQDLMIVMKKILEFDPS--NNQAKRTILRLQPLAE   95 (125)
Q Consensus        50 ~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~   95 (125)
                      +...|+.+.|.+.       +-..++.+.+  +..++..+-++...++
T Consensus       246 ~~~~g~~e~Ale~-------Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         246 LHLVGRNEAALEH-------LLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHcCCHHHHHHH-------HHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            8888888888877       7677776654  3456666666555554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.58  E-value=3.5  Score=31.87  Aligned_cols=88  Identities=10%  Similarity=-0.014  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALEL-NPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l-~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      .++..--.+++-+|+...-...+++++-. +|+.   .-.+--++.+++..|-|++|.+.       -.+++++||.+.=
T Consensus       138 la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~-------A~ralqiN~~D~W  210 (491)
T KOG2610|consen  138 LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQ-------ADRALQINRFDCW  210 (491)
T ss_pred             hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHH-------HHhhccCCCcchH
Confidence            34444445566677777777778887766 6554   44445578899999999999999       9999999999776


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~  101 (125)
                      +......+.+.-.+..++.
T Consensus       211 a~Ha~aHVlem~~r~Keg~  229 (491)
T KOG2610|consen  211 ASHAKAHVLEMNGRHKEGK  229 (491)
T ss_pred             HHHHHHHHHHhcchhhhHH
Confidence            6666666665544444433

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=90.50  E-value=2.1  Score=28.48  Aligned_cols=54  Identities=17%  Similarity=0.169  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  100 (125)
                      .......+......|+|..|...       ...++..+|+|.+++....++..++....+.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L-------~d~l~~adp~n~~ar~l~A~al~~lg~~~~~  123 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAEL-------LDHLVFADPDNEEARQLKADALEQLGYQSEN  123 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHH-------HHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            45667788888999999999998       9999999999999999999999888866433

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.29  E-value=0.66  Score=37.25  Aligned_cols=48  Identities=19%  Similarity=0.115  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK   52 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~   52 (125)
                      +-.+.||.|..|.-.|+.-.|..+|.+++..-..+++.|+++++|+..
T Consensus       334 s~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  334 SMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             chhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999999999873

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.12  E-value=5.4  Score=29.48  Aligned_cols=68  Identities=16%  Similarity=0.093  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   72 (125)
                      .+..|..-+.+|...++|+.|-..+.++..-...      -++++-..+.....+..+.++.+.+++++.+|.+
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE  103 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3566788888888889999999988888844322      2566667777788889999999997777777654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=90.10  E-value=4.5  Score=33.06  Aligned_cols=82  Identities=12%  Similarity=0.008  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhcCCCChHHHHHH------HHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIK-ECTKALELNPTYMKALIRR------AEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~l~p~~~~~~~~~------~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      ++....++.|++.+....|....+.. ..+-+....|++......+      +.....+++-.++...       .+++.
T Consensus        97 ~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------l~~~~  169 (620)
T COG3914          97 NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELA-------LERAV  169 (620)
T ss_pred             CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHH-------HHHHH
Confidence            45567788899999888777555544 4445899999998877777      6666667777777777       88888


Q ss_pred             hhCCCcHHHHHHHHHH
Q 033182           75 EFDPSNNQAKRTILRL   90 (125)
Q Consensus        75 ~l~p~~~~~~~~l~~~   90 (125)
                      .+.|.++.+...+-..
T Consensus       170 d~~p~~~~~~~~~~~~  185 (620)
T COG3914         170 DLLPKYPRVLGALMTA  185 (620)
T ss_pred             HhhhhhhhhHhHHHHH
Confidence            8899987766665555

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.93  E-value=2.2  Score=32.72  Aligned_cols=44  Identities=14%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             HHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182           32 ALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE   75 (125)
Q Consensus        32 al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~   75 (125)
                      .+..+|-+..+++.++.++..+|++..|.+.+++|+=+|++++.
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~   75 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH   75 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            35667889999999999999999999999999999999997665

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.66  E-value=6.5  Score=28.85  Aligned_cols=64  Identities=27%  Similarity=0.244  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKL-EHFEEAIAGIQDLMIVM   70 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~   70 (125)
                      .+.|...+.||.+ .+.++|+..+++++.+--+      -++-+..+|..|..- .+++.|+.+||.+-..|
T Consensus        74 at~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y  144 (288)
T KOG1586|consen   74 ATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY  144 (288)
T ss_pred             HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            4556666666654 4777788888877766432      234455677777754 78888888844444443

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.33  E-value=4.8  Score=31.46  Aligned_cols=63  Identities=14%  Similarity=0.196  Sum_probs=48.9

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcC---------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182           11 NRGICFLKLGKFEESIKECTKALELN---------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus        11 ~~~~~~~~~~~~~~A~~~~~~al~l~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      .+..+|+-+|+|..|++..+-. .++         +.+...+|..|.+|+-+++|.+|++.....|.-..+.-
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5566777799999999877643 222         35677899999999999999999999666666666555

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=89.20  E-value=4.9  Score=36.18  Aligned_cols=66  Identities=20%  Similarity=0.010  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      ++|..+.-.|.+.+++.+|.+.++..++---.-.+.|..+|..++.+.+-+.|...       +.+|++.-|.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~l-------L~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAREL-------LKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHH-------HHHHHhhcch
Confidence            34555666677777777777777777776666677888888888888887888777       7777777776

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.19  E-value=1.1  Score=23.77  Aligned_cols=26  Identities=12%  Similarity=0.267  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182           10 SNRGICFLKLGKFEESIKECTKALEL   35 (125)
Q Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~al~l   35 (125)
                      ++++.+|+++|+++.|....+.++.-
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            57899999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.87  E-value=5.4  Score=28.23  Aligned_cols=66  Identities=18%  Similarity=0.123  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      .+.+-.+++.+..++|++++|+..++...  ++.+ +..-..+|.++..+|+-++|...       |+++++.+++
T Consensus       125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~a-------y~kAl~~~~s  191 (207)
T COG2976         125 KALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAA-------YEKALESDAS  191 (207)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHH-------HHHHHHccCC
Confidence            34455666777777777777766554432  1111 22345577777777777777777       7777776544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=88.86  E-value=4  Score=31.56  Aligned_cols=67  Identities=13%  Similarity=0.067  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHH---hcCHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHH---------chhHHHHHHhHHHHHHHHHH
Q 033182            6 SICHSNRGICFLK---LGKFEESIKECTK-ALELNPTYMKALIRRAEAHEK---------LEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         6 ~~~~~~~~~~~~~---~~~~~~A~~~~~~-al~l~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~~~~~~~~   72 (125)
                      ..+-+..|.++-+   .|+.+.|+..+.. +...++.+++.+.-+|.+|-.         ....++|+.+       |.+
T Consensus       179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~-------Y~k  251 (374)
T PF13281_consen  179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEW-------YRK  251 (374)
T ss_pred             hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHH-------HHH
Confidence            4456678888888   8999999999999 555567889999988888753         3456788888       999


Q ss_pred             HHhhCCC
Q 033182           73 ILEFDPS   79 (125)
Q Consensus        73 a~~l~p~   79 (125)
                      +++++|+
T Consensus       252 gFe~~~~  258 (374)
T PF13281_consen  252 GFEIEPD  258 (374)
T ss_pred             HHcCCcc
Confidence            9999976

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.66  E-value=8  Score=28.60  Aligned_cols=66  Identities=18%  Similarity=0.180  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALEL-----NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMK   71 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~   71 (125)
                      +..|-..+....++..+.++...++++..+     .|+-+-.-..++.-....-+.++|++.||++|.|++
T Consensus        71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve  141 (308)
T KOG1585|consen   71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVE  141 (308)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            345667778888889999999999998766     256566667777777888899999999888888854

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.37  E-value=8.1  Score=28.31  Aligned_cols=71  Identities=14%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHH--------chhHHHHHHhHHHHHHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEK--------LEHFEEAIAGIQDLMIVMKKI   73 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~--------~~~~~~A~~~~~~~~~~~~~a   73 (125)
                      ...+...++.++++.++|+.|+...++-+++.|.+   .-+++-+|.++..        +.--..|...       |+..
T Consensus        70 ~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~-------f~~~  142 (254)
T COG4105          70 SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAA-------FKEL  142 (254)
T ss_pred             cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHH-------HHHH
Confidence            34567788999999999999999999999999865   4578888888763        3344666777       8888


Q ss_pred             HhhCCCcHH
Q 033182           74 LEFDPSNNQ   82 (125)
Q Consensus        74 ~~l~p~~~~   82 (125)
                      ++.=|+.+-
T Consensus       143 i~ryPnS~Y  151 (254)
T COG4105         143 VQRYPNSRY  151 (254)
T ss_pred             HHHCCCCcc
Confidence            888888644

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.34  E-value=6.3  Score=27.02  Aligned_cols=66  Identities=11%  Similarity=0.124  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIV   69 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   69 (125)
                      ..-..+..+|..|.+.|++++|++.|.++...-.   .....+++.-.+....++|......++++-.+
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999776542   23678889999999999999999994444433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.09  E-value=2.5  Score=22.36  Aligned_cols=26  Identities=19%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182           43 LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE   75 (125)
Q Consensus        43 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~   75 (125)
                      .+.+|.+|..+|+++.|...       ++.++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~l-------L~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGAREL-------LEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHH-------HHHHHH
Confidence            46899999999999999999       988884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13041 PPR_2: PPR repeat family

Probab=86.31  E-value=3.4  Score=21.73  Aligned_cols=39  Identities=18%  Similarity=0.090  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALI   44 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~   44 (125)
                      ...|.-+-..|.+.|++++|.+.|++..+.+- .+...|.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~   42 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN   42 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            45678888899999999999999999988762 3344433

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.82  E-value=5.3  Score=23.51  Aligned_cols=39  Identities=8%  Similarity=0.119  Sum_probs=30.7

Q ss_pred             HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ...|.-.-..|+|++|...|..|+..|..+++.+|+...
T Consensus        10 v~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~   48 (75)
T cd02684          10 VVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQR   48 (75)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence            344555667899999999999999999999988766443

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.50  E-value=10  Score=30.66  Aligned_cols=66  Identities=14%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-C-----ChHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP-T-----YMKALIRRAEAHEKLEHFEEAIAGIQDLMIV   69 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   69 (125)
                      +...+++-.|...+.++++.+|-....+.++... .     .+..+..+|.+....|+-.++...|.-++.+
T Consensus       443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql  514 (629)
T KOG2300|consen  443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL  514 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence            4677899999999999999999999999988861 1     1335555778888999999999994444433

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.25  E-value=2.6  Score=19.40  Aligned_cols=30  Identities=30%  Similarity=0.360  Sum_probs=25.3

Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182           20 GKFEESIKECTKALELNPTYMKALIRRAEA   49 (125)
Q Consensus        20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~   49 (125)
                      |+++.|...|++++...|..+..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            467889999999999999999988877654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=85.15  E-value=2.9  Score=25.44  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNP   37 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p   37 (125)
                      ...+..++|..+...|++++|+..++.++.+-.
T Consensus        40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   40 LAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            356688999999999999999999999998854

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.71  E-value=14  Score=27.28  Aligned_cols=94  Identities=15%  Similarity=0.114  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CC-------------------------ChHHHHHHHHHHHHchhHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELN--PT-------------------------YMKALIRRAEAHEKLEHFE   57 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~-------------------------~~~~~~~~~~~~~~~~~~~   57 (125)
                      .+.+.+..+...-..|+-.+|+...+..+...  ..                         .....-..+.++...|+|.
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            34555566666667777788887777766611  00                         1112233455555555555


Q ss_pred             HHH------HhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 033182           58 EAI------AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKL   98 (125)
Q Consensus        58 ~A~------~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~   98 (125)
                      ...      .....++..|..+.+++|++..++...+.....+-+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~  309 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESD  309 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhh
Confidence            544      33445555599999999999999988888876665443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=84.14  E-value=21  Score=28.96  Aligned_cols=63  Identities=11%  Similarity=-0.026  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182           25 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA   94 (125)
Q Consensus        25 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~   94 (125)
                      -...|..+...-+.+++.|.+...-..+.+.+.+-...       |.+++..+|++++.|.....-.-.+
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki-------~~~~l~~Hp~~~dLWI~aA~wefe~  152 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKI-------FAAMLAKHPNNPDLWIYAAKWEFEI  152 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHH-------HHHHHHhCCCCchhHHhhhhhHHhh
Confidence            44567778888888999999988877777777777777       9999999999999887665544333

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.94  E-value=8.2  Score=27.36  Aligned_cols=54  Identities=22%  Similarity=0.189  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHchhHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNP----TYMKALIRRAEAHEKLEHFEEAI   60 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p----~~~~~~~~~~~~~~~~~~~~~A~   60 (125)
                      +...+.+|..|. .-+...++..+-+++.+.+    -+++.+..++.+++++++++.|=
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            456677777776 4678889999999998853    35899999999999999999883

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=83.92  E-value=16  Score=28.68  Aligned_cols=84  Identities=20%  Similarity=0.136  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh----HHHHHHhHHHHHHHHHHHHh
Q 033182            2 AELRSICHSNRGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAHEKLEH----FEEAIAGIQDLMIVMKKILE   75 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~----~~~A~~~~~~~~~~~~~a~~   75 (125)
                      +|..-.+|+.|..+..+.+  +|..=+..++++++.||.+..+|..+-.+......    ..+-+++       ..+++.
T Consensus       105 npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f-------tt~~I~  177 (421)
T KOG0529|consen  105 NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF-------TTKLIN  177 (421)
T ss_pred             CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH-------HHHHHh
Confidence            5666788999999988755  47888889999999999998888776665554333    3455556       777777


Q ss_pred             hCCCcHHHHHHHHHHHH
Q 033182           76 FDPSNNQAKRTILRLQP   92 (125)
Q Consensus        76 l~p~~~~~~~~l~~~~~   92 (125)
                      -+++|-.++....-+..
T Consensus       178 ~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  178 DNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             ccchhhhHHHHHHHHHH
Confidence            78888888777666554

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=83.63  E-value=3.6  Score=31.57  Aligned_cols=55  Identities=16%  Similarity=0.291  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF   56 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~   56 (125)
                      ++..+.+++.++..+....++++|+++.+.+....|++......+..+-.....+
T Consensus       305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            3566788999999999999999999999999999999988766666655554444

>PF12854 PPR_1: PPR repeat

Probab=83.47  E-value=3.3  Score=20.24  Aligned_cols=27  Identities=11%  Similarity=0.128  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTK   31 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~   31 (125)
                      +...|.-+-..|.+.|+.++|.+.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            345677778888888999988887764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=83.04  E-value=13  Score=26.34  Aligned_cols=82  Identities=16%  Similarity=0.020  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHhc----CC---CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC------cHHHHHHH
Q 033182           21 KFEESIKECTKALEL----NP---TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS------NNQAKRTI   87 (125)
Q Consensus        21 ~~~~A~~~~~~al~l----~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~------~~~~~~~l   87 (125)
                      .++.|+..|.-|+..    ++   ..+..++++|=.|..+|+.+....+++.|+..|+++++.+..      ...+...+
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi  171 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI  171 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence            467777777665433    22   236788999999999999999999999999999999987633      24577789


Q ss_pred             HHHHHHHHHHHHHHH
Q 033182           88 LRLQPLAEEKLEKMK  102 (125)
Q Consensus        88 ~~~~~~~~~~~~~~~  102 (125)
                      +.+..++++..++.+
T Consensus       172 geL~rrlg~~~eA~~  186 (214)
T PF09986_consen  172 GELNRRLGNYDEAKR  186 (214)
T ss_pred             HHHHHHhCCHHHHHH
Confidence            999999998886665

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=82.84  E-value=2.7  Score=19.20  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALEL   35 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l   35 (125)
                      .|..+-.+|.+.|++++|...+++..+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            4667778888999999999988876654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10941 hypothetical protein; Provisional

Probab=82.81  E-value=6  Score=29.18  Aligned_cols=55  Identities=18%  Similarity=0.143  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  101 (125)
                      .+...++-.+|...++++.|+.+       .++.+.++|+++.-+.-.+-++.+++-...+.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~-------~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~  235 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRA-------SEALLQFDPEDPYEIRDRGLIYAQLDCEHVAL  235 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHH-------HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            45667788899999999999999       99999999999987777777777776554433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=81.82  E-value=19  Score=31.27  Aligned_cols=68  Identities=15%  Similarity=0.094  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 033182           21 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEE   96 (125)
Q Consensus        21 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~   96 (125)
                      .|.+|+..|++.. -.|.-+--|...|.+|..+|+|++-++.       +.-|++.=|.++.+......+--++.+
T Consensus       534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (932)
T PRK13184        534 DFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKS-------LLLALKRYSQHPEISRLRDHLVYRLHE  601 (932)
T ss_pred             HHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHH-------HHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            4677777776543 3467788999999999999999999999       999999999998866655555444443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=81.65  E-value=12  Score=24.56  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCCC------------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182            7 ICHSNRGICFLK--LGKFEESIKECTKALELNPT------------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         7 ~~~~~~~~~~~~--~~~~~~A~~~~~~al~l~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   72 (125)
                      ..|.-++..-.+  -|-|++|...|++++....+            ++-++-.++.++..+|+|++++.....+|-.|++
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            346666665554  46799999999999877522            3567888999999999999999998888888888


Q ss_pred             HHhhCCCcHH
Q 033182           73 ILEFDPSNNQ   82 (125)
Q Consensus        73 a~~l~p~~~~   82 (125)
                      ==+++.+...
T Consensus        88 RGEL~qdeGk   97 (144)
T PF12968_consen   88 RGELHQDEGK   97 (144)
T ss_dssp             H--TTSTHHH
T ss_pred             ccccccccch
Confidence            7777776444

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.45  E-value=20  Score=26.81  Aligned_cols=70  Identities=19%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH-HHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 033182           20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF-EEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEE   96 (125)
Q Consensus        20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~   96 (125)
                      ..-..|+...+.+|.++|-+-..|..+-.++.+++.. .+-+++       +.++++-+|.|-.++.-...+.+.++.
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~-------l~eI~e~npKNYQvWHHRr~ive~l~d  127 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEY-------LDEIIEDNPKNYQVWHHRRVIVELLGD  127 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHhCccchhHHHHHHHHHHHhcC
Confidence            4467788888888888888888887777777766544 455567       777888888887777666666655553

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.43  E-value=12  Score=31.25  Aligned_cols=66  Identities=15%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMK   71 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~   71 (125)
                      +...-+++.||....+.+.|.+.+..|=+.||.++-.-+..-.+...-++-++|+..+++....+.
T Consensus       394 aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  394 AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            345568899999999999999999999999999998888888888889999999999776666544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.24  E-value=10  Score=28.79  Aligned_cols=55  Identities=22%  Similarity=0.251  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  101 (125)
                      .+...-.+..|...|.+.+|++.       .+++++++|=+.+.+..+-.+....++..+..
T Consensus       279 ~kllgkva~~yle~g~~neAi~l-------~qr~ltldpL~e~~nk~lm~~la~~gD~is~~  333 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQL-------HQRALTLDPLSEQDNKGLMASLATLGDEISAI  333 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHH-------HHHHhhcChhhhHHHHHHHHHHHHhccchhhh
Confidence            44555677888999999999999       99999999999999999988888887754443

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=80.81  E-value=24  Score=27.96  Aligned_cols=69  Identities=12%  Similarity=0.089  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALEL----NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ++..+-+=.+|..-+.|+.|...-.+..--    +..+++..|.+|.+..-+++|..|..+       +-.|+...|.+.
T Consensus       209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~-------~~qa~rkapq~~  281 (493)
T KOG2581|consen  209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEY-------FLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHH-------HHHHHHhCcchh
Confidence            344444455555566677776655554311    124567778899999999999999999       999999999743

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=80.70  E-value=6.3  Score=25.20  Aligned_cols=47  Identities=21%  Similarity=0.306  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182           23 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus        23 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      -.++..|+++..+.|..+..++.+|.=+-...-|++++.-       .++++.+
T Consensus        61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~k-------ak~~Lsv  107 (111)
T PF04781_consen   61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKK-------AKRGLSV  107 (111)
T ss_pred             HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHhcc
Confidence            4588899999999999999999999888888888888888       8888775

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=80.54  E-value=12  Score=23.86  Aligned_cols=79  Identities=6%  Similarity=0.029  Sum_probs=53.4

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHchhHH----HHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182           12 RGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEHFE----EAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus        12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~~~~~~~~~~~~----~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ++.-+++.|++-.|++..+..+...++..   -.+..-|.++..+..-.    .=..+.-.+..-+.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56778899999999999999999988766   44555677765544331    111122333333888888888886666


Q ss_pred             HHHHHH
Q 033182           85 RTILRL   90 (125)
Q Consensus        85 ~~l~~~   90 (125)
                      ..+++-
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            666654

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.02  E-value=22  Score=26.58  Aligned_cols=92  Identities=14%  Similarity=0.090  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHH-HHHHhHHHHHHHHHHHHhhCCC
Q 033182            2 AELRSICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE-EAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +|-.=++|.-|-.+...++. ..+-+...+..+.-+|+|-..|+.+-.+....|+.. .-+..       .+.++..+..
T Consensus        73 NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef-------~~~~l~~DaK  145 (318)
T KOG0530|consen   73 NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF-------TKLMLDDDAK  145 (318)
T ss_pred             CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH-------HHHHHhcccc
Confidence            45666788888888877654 667788889999999999999999999999999887 66777       8999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~  100 (125)
                      |-.++....=+.+.++.....
T Consensus       146 NYHaWshRqW~~r~F~~~~~E  166 (318)
T KOG0530|consen  146 NYHAWSHRQWVLRFFKDYEDE  166 (318)
T ss_pred             chhhhHHHHHHHHHHhhHHHH
Confidence            988888888777777765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-08
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		3e-08
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		5e-08
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		1e-07
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		1e-07
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-07
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		2e-07
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-07
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-07
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		2e-06
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		6e-06
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		8e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		9e-06
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-05
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		2e-05
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-05
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		3e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-05
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		5e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		7e-05
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-04
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		3e-04

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
           N G  + K G ++++I+   KALEL+P   KA  RR  A+ K   +++AI   Q      
Sbjct: 48  NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQ------ 101
Query: 71  KKILEFDPSNNQAKRTI 87
            K LE DP+N +AK+ +
Sbjct: 102 -KALELDPNNAKAKQNL 117

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 4   LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
           LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  FE A A  
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADF 253
Query: 64  QDLMIVMKKILEFDPSNNQAKRTIL 88
           Q       K+L+  P NN+A +T L
Sbjct: 254 Q-------KVLQLYP-NNKAAKTQL 270

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 4   LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
           LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  FE A A  
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 253
Query: 64  QDLMIVMKKILEFDPSNNQAKRTIL 88
           Q       K+L+  P NN+A +T L
Sbjct: 254 Q-------KVLQLYP-NNKAAKTQL 270

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 7   ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
           + +SN   C++  G  E+ I+  TKALE+ P + KAL+RRA A+E L +F +A+
Sbjct: 56  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 109

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 7   ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
           + +SN   C++  G  E+ I+  TKALE+ P + KAL+RRA A+E L +F +A+
Sbjct: 60  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           +SNR  C+ KL +F+ ++K+C + ++L PT++K   R+A A E ++ + +A       M 
Sbjct: 53  YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA-------MD 105
Query: 69  VMKKILEFDPSNNQAKRTILR 89
           V +K L+ D S  +A     R
Sbjct: 106 VYQKALDLDSSCKEAADGYQR 126

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 7  ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
          + +SN   C++ +G  ++ ++  TKALEL P Y K L+RRA A+E L  F +A+
Sbjct: 40 VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM 93

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
           C  N G C LK+  ++ ++  C +ALE++P+  KAL RRA+  + L+ +++A+A      
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD----- 329
Query: 68  IVMKKILEFDPSNNQAKRTILRLQ 91
             +KK  E  P +   +  +L+++
Sbjct: 330 --LKKAQEIAPEDKAIQAELLKVK 351

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
           N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI          
Sbjct: 48  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-------YY 100
Query: 71  KKILEFDPSNNQAKRTI 87
           +K LE DP+N +AK+ +
Sbjct: 101 QKALELDPNNAEAKQNL 117

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
          N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI          
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-------YY 66
Query: 71 KKILEFDPSNNQAKRTI 87
          +K LE DP+N +AK+ +
Sbjct: 67 QKALELDPNNAEAKQNL 83

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
           N  +C+LKL ++ ++++ C KAL L+    K L RR EA   +  FE A    +      
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE------ 375
Query: 71  KKILEFDPSNNQAKRTILRLQPLA 94
            K+LE +P N  A+  I   Q  A
Sbjct: 376 -KVLEVNPQNKAARLQIFMCQKKA 398

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 5   RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
           +++ H NR  C LKL  ++++  E +KA+E +   +KAL RR++A EKL   ++A+    
Sbjct: 64  QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV---- 119
Query: 65  DLMIVMKKILEFDPSN 80
              + +++ +  +P N
Sbjct: 120 ---LDLQRCVSLEPKN 132

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 44/69 (63%)
Query: 4   LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
           L ++ ++NR +C+LK+ + E+++ +C +ALEL+   +KA     +   ++E ++EAIA +
Sbjct: 41  LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 100
Query: 64  QDLMIVMKK 72
           Q    + K+
Sbjct: 101 QRAYSLAKE 109

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 41/61 (67%)
Query: 4  LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
          L ++ ++NR +C+LK+ + E+++ +C +ALEL+   +KA     +   ++E ++EAIA +
Sbjct: 36 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 95
Query: 64 Q 64
          Q
Sbjct: 96 Q 96

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
           NR   + KLG +  ++++C +A+ ++P Y KA  R   A   L    EA+A         
Sbjct: 51  NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA-------YY 103
Query: 71  KKILEFDPSNNQAKRTI 87
           KK LE DP N   K  +
Sbjct: 104 KKALELDPDNETYKSNL 120

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
          +SNR     KL  F E+I +C KA+E +P +++A IR+A A   ++ +  A+
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 92

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           +I +SNR  C  KL +F+ ++ +C   + L+  ++K  IR+A     +  + +A    +D
Sbjct: 47  AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED 106
Query: 66  LMIVMKKILEFDPSNNQAKRTI 87
                   L+ DPSN +A+  +
Sbjct: 107 -------ALQVDPSNEEAREGV 121

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
           N  +C+LKL ++ ++++ C KAL L+    K L RR EA   +  FE A    +      
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE------ 375
Query: 71  KKILEFDPSNNQAKRTILRLQPLA 94
            K+LE +P N  A+  I   Q  A
Sbjct: 376 -KVLEVNPQNKAARLQISMCQKKA 398

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
           N G  + K G ++E+I+   KALEL P   +A      A+ K   ++EAI          
Sbjct: 48  NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE-------YY 100
Query: 71  KKILEFDPSNNQAKRTI 87
           +K LE  P+N +AK+ +
Sbjct: 101 QKALELYPNNAEAKQNL 117

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
           +SNR     KL  F E+I +C KA+E +P +++A IR+A A   ++ +  A+
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
          N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI          
Sbjct: 6  NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-------YY 58
Query: 71 KKILEFDPSNNQA 83
          +K LE DP + +A
Sbjct: 59 QKALELDPRSAEA 71

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
          N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI          
Sbjct: 8  NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-------YY 60
Query: 71 KKILEFDP 78
          +K LE DP
Sbjct: 61 QKALELDP 68

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 7  ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 59
          + +SNR   + K G ++++ ++  K ++L P + K   R+A A E L  FEEA
Sbjct: 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-28
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-24
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-24
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-24
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-24
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-22
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	7e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-20
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-07
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	8e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-10
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-13
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-12
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	6e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-10
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	9e-08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  100 bits (252), Expect = 1e-28
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           + +++ H NR  C LKL  ++++  E +KA+E +   +KAL RR++A EKL   ++A   
Sbjct: 62  QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQA--- 118

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQ 91
           + DL    ++ +  +P N   +  +  + 
Sbjct: 119 VLDL----QRCVSLEPKNKVFQEALRNIS 143

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 89.3 bits (222), Expect = 2e-24
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           +  +SNR     KL  F E+I +C KA+E +P +++A IR+A A   ++ +  A+     
Sbjct: 38  ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE---- 93

Query: 66  LMIVMKKILEFDPSNN--QAKRTILRLQPLAEEK 97
               +      D   N   + R I +L   A ++
Sbjct: 94  ---TLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            G  +     +  ++K  T+ ++  P   +    RA A  KL  F EAIA
Sbjct: 9  LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 59

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 89.3 bits (222), Expect = 3e-24
 Identities = 19/102 (18%), Positives = 47/102 (46%), Gaps = 12/102 (11%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           ++ ++NR +C+LK+ + E+++ +C +ALEL+   +KA     +   ++E ++EAIA    
Sbjct: 43  AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA---- 98

Query: 66  LMIVMKKILEFDPSNN-----QAKRTILRLQPLAEEKLEKMK 102
               +++                   +   +      +E+ +
Sbjct: 99  ---NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 88.8 bits (221), Expect = 4e-24
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           +I +SNR  C  KL +F+ ++ +C   + L+  ++K  IR+A     +  + +A      
Sbjct: 47  AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQR---- 102

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQ 91
                +  L+ DPSN +A+  +    
Sbjct: 103 ---AYEDALQVDPSNEEAREGVRNCL 125

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 88.8 bits (221), Expect = 4e-24
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           +  +SNR  C+ KL +F+ ++K+C + ++L PT++K   R+A A E ++ + +A+     
Sbjct: 50  AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMD---- 105

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQ 91
              V +K L+ D S  +A     R  
Sbjct: 106 ---VYQKALDLDSSCKEAADGYQRCM 128

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 7/51 (13%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 59
           ++ +      +  + +++    KAL+L+ +         EA +  +    A
Sbjct: 87  YTRKAAALEAMKDYTKAMDVYQKALDLDSSC-------KEAADGYQRCMMA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 88.0 bits (219), Expect = 7e-24
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           ++   NR   + KLG +  ++++C +A+ ++P Y KA  R   A   L    EA+A    
Sbjct: 46  AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYY-- 103

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEK 100
                KK LE DP N   K  +      AE KL +
Sbjct: 104 -----KKALELDPDNETYKSNLKI----AELKLRE 129

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 87.6 bits (218), Expect = 7e-24
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
            + +SNR   + K G ++++ ++  K ++L P + K   R+A A E L  FEEA      
Sbjct: 38  HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR---- 93

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQ 91
                ++ L+ + +N Q K  +  ++
Sbjct: 94  ---TYEEGLKHEANNPQLKEGLQNME 116

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 92.3 bits (229), Expect = 9e-24
 Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 1   MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
              LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  FE A 
Sbjct: 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR 250

Query: 61  AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE---EMIGKLGND 112
           A   D     +K+L+  P+N  AK  +   Q     +L + K+    M  +L  +
Sbjct: 251 A---DF----QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEE 298

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 88.6 bits (220), Expect = 1e-23
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 1   MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
           +       ++N   C+L +G   E+ +  ++ L+   T  KAL RRA+A       +EA 
Sbjct: 58  LDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAE 117

Query: 61  AGIQDLMIVMKKILEFDPSNNQAKRTILR-LQPLAEEKLEKMKE 103
               DL    K +L   P+        ++ +     EK    + 
Sbjct: 118 E---DL----KLLLRNHPAAASVVAREMKIVTERRAEKKADSRV 154

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 88.7 bits (220), Expect = 2e-23
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 1   MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
              +   C+ N   C+ K   + ++I   +K L+++   +KAL +   A+      EEA 
Sbjct: 83  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA- 141

Query: 61  AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
              ++L     K    +P+N   + +        +E  +K K 
Sbjct: 142 --KENL----YKAASLNPNNLDIRNSYELCVNKLKEARKKDKL 178

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 85.9 bits (213), Expect = 1e-22
 Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           +I + NR + +L+   +  ++ + T+A+EL+  Y+K   RRA ++  L  F  A   ++D
Sbjct: 47  AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA---LRD 103

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEK 100
                + +++  P +  AK        + ++K  +
Sbjct: 104 Y----ETVVKVKPHDKDAKMKYQECNKIVKQKAFE 134

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTY--MKALIRRAEAHEKLEHFEEAIAGIQDL 66
           +  R    + LGKF  ++++    +++ P     K   +      K + FE AIAG +  
Sbjct: 84  YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143

Query: 67  MIVMKKI 73
             V+  +
Sbjct: 144 RSVVDSL 150

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 86.2 bits (214), Expect = 2e-21
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 11/102 (10%)

Query: 2   AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           AE           CF K  K  E+I+ C++ L++ P  + AL  RAEA+   E ++EAI 
Sbjct: 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327

Query: 62  GIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
              D     +   E + ++ Q +  + +    A+  L++ ++
Sbjct: 328 ---DY----EAAQEHNENDQQIREGLEK----AQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 74.2 bits (183), Expect = 5e-17
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
            I +  R   FL +GK + ++ + TK + L   +  A ++R     K    +EA      
Sbjct: 37  YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF-- 94

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKLGN 111
                KK+L+ +PS  + K    +L    E +  + +        +
Sbjct: 95  -----KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.4 bits (160), Expect = 8e-14
 Identities = 14/91 (15%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
              R  CF+K G+  ++I +   A +L     +A  + +  + +L   E +++ ++    
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR---- 212

Query: 69  VMKKILEFDPSNNQAKRTILRLQPLAEEKLE 99
              + L+ D  + +      +++ L +    
Sbjct: 213 ---ECLKLDQDHKRCFAHYKQVKKLNKLIES 240

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
          H   G   L  G+  +++ +   A++ +P    A  RRA     +   + A+    DL  
Sbjct: 6  HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP---DL-- 60

Query: 69 VMKKILEFDPSNNQA 83
             K++        A
Sbjct: 61 --TKVIALKMDFTAA 73

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
             ++ +       +  +I    K LE+     +    RAE   K     +AI+       
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS------- 175

Query: 69  VMKKILEFDPSNNQA 83
            +K   +    N +A
Sbjct: 176 DLKAASKLKSDNTEA 190

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.8 bits (130), Expect = 8e-10
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 19/107 (17%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKA------------LIRRAEAHEKLEHF 56
                  + +LG  E S+ E  + L+L+  + +             LI  AE   +   +
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250

Query: 57  EEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
            +A +         + +++ +PS  +              K EK  E
Sbjct: 251 TDATS-------KYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 22/91 (24%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKA---------------LIRRAEAHEKL 53
              RG   LK GK +E+  +  K L+ NP+  +                L  +A      
Sbjct: 74  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133

Query: 54  EHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84
             +  AI         + KILE    + + +
Sbjct: 134 ADYTAAIT-------FLDKILEVCVWDAELR 157

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 85.5 bits (211), Expect = 3e-21
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 1   MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
              +++ CH N   C +KL +++E+I  C   L       KAL RR +A  +L   + A 
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284

Query: 61  AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKLGN 111
               D     +K  ++ P +   +R +  L    +   +K KE   G    
Sbjct: 285 D---DF----RKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 80.5 bits (199), Expect = 1e-20
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
            I  SNR   +   G+ E++ ++   A  ++P Y KA  R   A   +  ++ A    + 
Sbjct: 45  PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYE- 103

Query: 66  LMIVMKKILEFDPSNN--QAKRTILRLQPLAEEKLEKMKEE 104
                 K +E + +      KR +   +   EE     +  
Sbjct: 104 ------KGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPP 138

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
          + G   +   ++ ++I   T+AL + P     L  RA A+      E+A  
Sbjct: 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE 66

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 83.6 bits (207), Expect = 3e-20
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 2   AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           AE           CF K  K  E+I+ C++ L++ P  + AL  RAEA+   E ++EA  
Sbjct: 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA-- 348

Query: 62  GIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIG 107
            IQD     +   E + ++ Q +  + + Q L ++  ++   +++G
Sbjct: 349 -IQDY----ETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILG 389

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.1 bits (185), Expect = 3e-17
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
            +  R   FL +GK + ++ + TK ++L   +  A ++R     K    +EA        
Sbjct: 62  AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED------ 115

Query: 68  IVMKKILEFDPSNNQAKRTILRLQPLAE 95
              KK+L+ +PS N+ K    +L    E
Sbjct: 116 -DFKKVLKSNPSENEEKEAQSQLIKSDE 142

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
              R  CF+K G+  ++I +   A +L     +A  + +  + +L   E +++ ++    
Sbjct: 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR---- 235

Query: 69  VMKKILEFDPSNNQAKR 85
              + L+ D  + +   
Sbjct: 236 ---ECLKLDQDHKRCFA 249

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
          H   G   L  G+  +++ +   A++ +P    A  RRA     +   + A+    DL  
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP---DL-- 83

Query: 69 VMKKILEFDPSNNQA 83
             K+++       A
Sbjct: 84 --TKVIQLKMDFTAA 96

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
             ++ +     G +  +I    K LE+     +    RAE   K     +AI+       
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS------- 198

Query: 69  VMKKILEFDPSNNQA 83
            +K   +    N +A
Sbjct: 199 DLKAASKLKNDNTEA 213

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 19/107 (17%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKA------------LIRRAEAHEKLEHF 56
                  + +LG  E S+ E  + L+L+  + +             LI  AE   +   +
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273

Query: 57  EEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
            +A +         + +++ +PS  +              K EK  E
Sbjct: 274 TDATS-------KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 22/91 (24%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTY---------------MKALIRRAEAHEKL 53
              RG   LK GK +E+  +  K L+ NP+                M+ L  +A      
Sbjct: 97  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156

Query: 54  EHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84
             +  AIA        + KILE    + + +
Sbjct: 157 GDYTAAIA-------FLDKILEVCVWDAELR 180

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 11  NRGICFLKLGKFEESIKECTKALELNP----TYMKALIRRAEAHEKLEHFEEAIAGIQDL 66
                 ++ G++ ++  +    ++  P      +++  R      K E   EAI      
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR----- 316

Query: 67  MIVMKKILEFDPSNNQA 83
             V  ++L+ +P N  A
Sbjct: 317 --VCSEVLQMEPDNVNA 331

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 81.3 bits (200), Expect = 2e-19
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 1   MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
                     N  +C+LKL ++ ++++ C KAL L+    K L RR EA   +  FE A 
Sbjct: 312 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK 371

Query: 61  AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
               D     +K+LE +P N  A+  I   Q  A+E  E+ + 
Sbjct: 372 G---DF----EKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 78.8 bits (194), Expect = 5e-19
 Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           ++ ++NR +C+LK+ + E+++ +C +ALEL+   +KA     +   ++E ++EAIA +Q 
Sbjct: 38  AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ- 96

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEE 104
                 +               +       +K      E
Sbjct: 97  ------RAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 129

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.8 bits (190), Expect = 2e-18
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           +SNR     KL  F E+I +C KA+E +P +++A IR+A A   ++ +  A+        
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE------- 228

Query: 69  VMKKILEFDPSNNQAK--RTILRLQ 91
            +      D   N     R I +L 
Sbjct: 229 TLDAARTKDAEVNNGSSAREIDQLY 253

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            +NR     + G++E +I     A+E            +++  ++ +    +    DL  
Sbjct: 41  LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG---DL-- 95

Query: 69  VMKKILEFDPSNNQA--KRTILRLQPLAEEKLE 99
             KK +E+   +        IL     AE++L+
Sbjct: 96  --KKTIEYYQKSLTEHRTADILTKLRNAEKELK 126

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 62.6 bits (153), Expect = 4e-13
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G  +     +  ++K  T+ ++  P   +    RA A  KL  F EAIA   D   
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA---DC-- 196

Query: 69  VMKKILEFDPSNNQA 83
              K +E DP+  +A
Sbjct: 197 --NKAIEKDPNFVRA 209

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
              G  F K  +F+E+I+   KA EL+      L  RA A  +   +E AI+
Sbjct: 8  EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIS 59

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 53.3 bits (129), Expect = 9e-10
 Identities = 7/51 (13%), Positives = 16/51 (31%)

Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
                  KL   E+ +K+      +NP   +      + +     +  A+ 
Sbjct: 110 RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 2/49 (4%), Positives = 14/49 (28%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 57
           +  +    + + ++  +++    A   +         R       +  +
Sbjct: 210 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 76.7 bits (189), Expect = 8e-18
 Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 1   MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
           +  +   C  N G C LK+  ++ ++  C +ALE++P+  KAL RRA+  + L+ +++A+
Sbjct: 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327

Query: 61  AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102
           A   DL    KK  E  P +   +  +L+++   + + +K K
Sbjct: 328 A---DL----KKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 76.3 bits (188), Expect = 1e-17
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 8/100 (8%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
            + +SN   C++ +G  ++ ++  TKALEL P Y K L+RRA A+E L  F +A+  +  
Sbjct: 39  PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS- 97

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEM 105
                   L  D ++   +  + R   L ++ + K+KE+ 
Sbjct: 98  -----VLSLNGDFNDASIEPMLERN--LNKQAMSKLKEKF 130

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.8 bits (153), Expect = 8e-13
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           +    +         E      KAL+L+         R + +  L+++++A         
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD---- 328

Query: 69  VMKKILEFDPSNNQA 83
              K  E DP N   
Sbjct: 329 ---KAKELDPENIFP 340

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 7e-12
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           + +RG     L  ++++ K+  KA EL+P  +   I+ A    +   F++          
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET------- 359

Query: 69  VMKKILEFDPSNNQA 83
           +  +     P   + 
Sbjct: 360 LFSEAKRKFPEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           +        +  KF++     ++A    P   +     AE       F++A+        
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD---- 396

Query: 69  VMKKILEFDPSNNQA 83
                +E +   +  
Sbjct: 397 ---LAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.1 bits (138), Expect = 7e-11
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 17/101 (16%)

Query: 9   HSNRGICFLK---------LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 59
           +        K         +  F E+     KA +L+P   +A I  A+   + E  +EA
Sbjct: 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468

Query: 60  IAGIQDLMIVMKKILEFDPSNNQAKRTI-LRLQPLAEEKLE 99
           I        + ++  +   +  +  + I        ++++ 
Sbjct: 469 IT-------LFEESADLARTMEEKLQAITFAEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
             + GI          + ++  KA+EL P    + I  A          E   
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYN 291

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 16/85 (18%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK---------LEHFEE 58
             +           F++++K+   A+EL        +  A    K         +E+F E
Sbjct: 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433

Query: 59  AIAGIQDLMIVMKKILEFDPSNNQA 83
           A   ++       K  + DP + QA
Sbjct: 434 ATNLLE-------KASKLDPRSEQA 451

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.0 bits (130), Expect = 8e-10
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++G  F +  K++++IK    ALEL    +      +  +  +   ++ +        
Sbjct: 9  LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVE---MS-- 62

Query: 69 VMKKILEFDPSNNQA 83
             K LE  P  ++ 
Sbjct: 63 --TKALELKPDYSKV 75

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
                      L+    +E+I    ++ +L  T  + L  +A    +    ++ I
Sbjct: 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL--QAITFAEAAKVQQRI 501

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 3/102 (2%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKA---LELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           S     R      LGKF +++ + +      + N   ++ ++ R    + +   +E    
Sbjct: 73  SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEE 104
           I        ++        + K+  L             K E
Sbjct: 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 7/63 (11%)

Query: 19  LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78
              FEE + +  +  +L      +L               A   I+       K +E  P
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK-------KAIELFP 268

Query: 79  SNN 81
             N
Sbjct: 269 RVN 271

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 71.2 bits (175), Expect = 1e-17
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
            + +SN+ +  +KLG++ ++I+ C + L    T     IR      +LE  + A+  +Q 
Sbjct: 38  PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQ- 95

Query: 66  LMIVMKKILEFDPSNNQAKRT 86
                  ++E D       R+
Sbjct: 96  -----IPVVEVDELPEGYDRS 111

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
            +G    K G + E++    + +   P        +A A  KL  + +A   IQ      
Sbjct: 9   EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQA---IQMC---- 61

Query: 71  KKILEFDPSNNQA---KRTILRLQPLAEEKLEKMKE 103
           ++ L +  +        +   RL+ LA+  +  ++ 
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYRLE-LAQGAVGSVQI 96

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.1 bits (172), Expect = 2e-15
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
            + +SN   C++  G  E+ I+  TKALE+ P + KAL+RRA A+E L +F +A+  +  
Sbjct: 59  PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-- 116

Query: 66  LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKLGN 111
                  +L  +   + A    +  + L ++ ++ + E +    G 
Sbjct: 117 ------SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           +    +        +E  K   KA++LNP Y      R + +  L+ ++ A         
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE------- 331

Query: 69  VMKKILEFDPSNNQA 83
             +K    +P N   
Sbjct: 332 DFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           + +RG  +  L  ++ + ++  KA  LNP  +   I+ A    K   F E+ A       
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA------- 365

Query: 69  VMKKILEFDPSNNQA 83
              +     P+  + 
Sbjct: 366 FFNETKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            NRG  F     F E+IK    A+EL+P         +  +      E+ I        
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT---- 83

Query: 69 VMKKILEFDPSNNQA 83
             K LE  P +++A
Sbjct: 84 ---KALEIKPDHSKA 95

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           +        K GKF ES     +     PT  +     AE       F+ AI        
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY----- 401

Query: 69  VMKKILEFDPSNNQA 83
                   +    + 
Sbjct: 402 --DIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
               GI         ++     +++ L+PT   + I  A      E+ +E   
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFK 297

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            S++    L   KF  +IK  TKA EL+P   +A I  A+   ++E  +EAI        
Sbjct: 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE------- 483

Query: 69  VMKKILEFDPSNNQAKRTI-LRLQPLAEEKLEKMKEEMIGKLGN 111
           + +       + ++  +          +++L      +  K+  
Sbjct: 484 LFEDSAILARTMDEKLQATTFAEAAKIQKRLRA-DPIISAKMEL 526

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 7e-09
 Identities = 18/92 (19%), Positives = 25/92 (27%), Gaps = 23/92 (25%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK--------------- 52
             +         G F+ +IK+   A  L     K  +       K               
Sbjct: 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439

Query: 53  -LEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83
             E F  AI  +        K  E DP + QA
Sbjct: 440 DEEKFNAAIKLL-------TKACELDPRSEQA 464

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKA-----LIRRAEAHEKLEHFEEAIAG 62
                    L++ K +E+I+    +  L  T  +          A+  ++L       A 
Sbjct: 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAK 523

Query: 63  IQDLMIVMKK 72
           ++  +   + 
Sbjct: 524 MELTLARYRA 533

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 9/73 (12%), Positives = 18/73 (24%), Gaps = 7/73 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
                +       +   +   T    L      AL      H    +  +A   +Q    
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ---- 267

Query: 69  VMKKILEFDPSNN 81
              + +   P+ N
Sbjct: 268 ---ESINLHPTPN 277

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 11/68 (16%)

Query: 20 GKFEESIKECTKALELNP----TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75
          G       +  +   L+P     Y   L  R       ++F EAI          +  +E
Sbjct: 1  GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIK-------YYQYAIE 53

Query: 76 FDPSNNQA 83
           DP+    
Sbjct: 54 LDPNEPVF 61

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 65.0 bits (159), Expect = 7e-15
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 14/84 (16%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNP-------TYMKALIRRAEAHEKLEHFEEAIA 61
           ++N+   + +  KF E ++ C KA+E+            KA+ R   A +K      A+ 
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104

Query: 62  GIQDLMIVMKKILEFDPSNNQAKR 85
                     + L         K+
Sbjct: 105 WF-------HRSLSEFRDPELVKK 121

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 51.9 bits (125), Expect = 7e-10
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
           + G    K   FE++     KA+EL+P+ +     +A  + + + F E +          
Sbjct: 13  DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ-------FC 65

Query: 71  KKILEFDPSNNQAKRTI----LRLQPLAEEKLEKMKE 103
           +K +E         + I     R    A +K   +  
Sbjct: 66  EKAVEVGRETRADYKLIAKAMSRAG-NAFQKQNDLSL 101

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 63.1 bits (154), Expect = 3e-14
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 19/104 (18%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNP-------TYMKALIRRAEAHEKLEHFEE 58
               +N+   + + G + +  + C KA+E+            KA  R   ++ K E +++
Sbjct: 38  MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKD 97

Query: 59  AIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102
           AI           K L    + +  K+   +    AE+ L++ +
Sbjct: 98  AIHFY-------NKSLAEHRTPDVLKK--CQ---QAEKILKEQE 129

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            G    K   F+ ++K   KA EL+PT M  +  +A  + +   + +   
Sbjct: 9  ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRE 59

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 61.3 bits (150), Expect = 1e-13
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
          +   G+     G + ESI    KA++L+P   K  + + +A   LE +EEA+ 
Sbjct: 9  YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 55.2 bits (134), Expect = 3e-11
 Identities = 8/75 (10%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYM--KALIRRAEAHEKLEHFEEAIAGIQDL 66
              +G     L ++EE++      + +            +A+A   +E  E         
Sbjct: 43  WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAE----- 97

Query: 67  MIVMKKILEFDPSNN 81
             + +   + +  ++
Sbjct: 98  --IAEARAKLEHHHH 110

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           +I + NR + +L+   +  ++ + T+A+EL+  Y+K   RRA ++  L  F  A+     
Sbjct: 40  AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR---- 95

Query: 66  LMIVMKKILEFDPSNNQAKR 85
                + +++  P +  AK 
Sbjct: 96  ---DYETVVKVKPHDKDAKM 112

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 16 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75
          + K   +E +IK  ++A+ELNP+       R+ A+ + E +  A+           + +E
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT-------RAIE 68

Query: 76 FDPSNNQAK 84
           D    +  
Sbjct: 69 LDKKYIKGY 77

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G   +K G+   +I++   A++ + T +    +         +F  AI        
Sbjct: 77  FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ------- 129

Query: 69  VMKKILEFDPSNNQA 83
            M+K +    ++ + 
Sbjct: 130 YMEKQIRPTTTDPKV 144

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
            +   G  F   G F  +I+   K +    T  K      +A+   + + +A +      
Sbjct: 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS------ 163

Query: 68  IVMKKILEFDPSNNQA 83
               K+LE  P+    
Sbjct: 164 -SFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 4/75 (5%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
                   K   + E+I+   K             RRA  + +L  ++ A   I+    
Sbjct: 6  EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY-- 63

Query: 69 VMKKILEFDPSNNQA 83
               +    + +  
Sbjct: 64 --FSKVNATKAKSAD 76

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G  +    ++ ++     K LEL P      + RA A+   +   +          
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYY-- 202

Query: 69  VMKKILEFDPSNNQA 83
             +K++E        
Sbjct: 203 --EKLIEVCAPGGAK 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 9   HSNRGICFLKLGKFEESIKEC---TKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           ++ R +C+ +L K++ + K+       +              +   K      AI     
Sbjct: 40  YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ---- 95

Query: 66  LMIVMKKILEFDPSNNQA 83
                +  ++ D +    
Sbjct: 96  ---QYQAAVDRDTTRLDM 110

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 8/48 (16%), Positives = 14/48 (29%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 55
            +      +       ++       L L+PT  KA+       E   H
Sbjct: 223 ANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 18/87 (20%)

Query: 9   HSNRGICFLKLG---KFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFE 57
           +  R           K   +     K +E+            ++A    A  +       
Sbjct: 179 YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238

Query: 58  EAIAGIQDLMIVMKKILEFDPSNNQAK 84
           +A A         K IL  DP+N +A 
Sbjct: 239 KADA-------AWKNILALDPTNKKAI 258

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           + N      + G   E+      AL L PT+  +L   A    +  + EEA+   +    
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR---- 329

Query: 69  VMKKILEFDPSNNQA 83
              K LE  P    A
Sbjct: 330 ---KALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            +N      + G  EE+++   KALE+ P +  A    A   ++    +EA+   +    
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK---- 363

Query: 69  VMKKILEFDPSNNQA 83
              + +   P+   A
Sbjct: 364 ---EAIRISPTFADA 375

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           H N    + + G  + +I    +A+EL P +  A    A A ++     EA         
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN---- 295

Query: 69  VMKKILEFDPSNNQA 83
                L   P++  +
Sbjct: 296 ---TALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 8e-12
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           + N G    +   F+ ++    +AL L+P +       A  + +    + AI        
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID------- 258

Query: 69  VMKKILEFDPSNNQA 83
             ++ +E  P    A
Sbjct: 259 TYRRAIELQPHFPDA 273

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 9e-12
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
            +SN G  + + G+ +E+I+    AL L P ++   I  A A       E A+       
Sbjct: 69  AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ------ 122

Query: 68  IVMKKILEFDPSNNQA 83
                 L+++P     
Sbjct: 123 -AYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           + N     +  G  E +++    AL+ NP             + L   EEA A       
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA------- 156

Query: 69  VMKKILEFDPSNNQA 83
              K +E  P+   A
Sbjct: 157 CYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            S+ G     LG+ EE+     KA+E  P +  A                AI   +    
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE---- 193

Query: 69  VMKKILEFDPSNNQA 83
              K +  DP+   A
Sbjct: 194 ---KAVTLDPNFLDA 205

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            SN G  F   G+   +I    KA+ L+P ++ A I      ++   F+ A+A       
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY----- 226

Query: 69  VMKKILEFDPSNNQA 83
              + L   P++   
Sbjct: 227 --LRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
                    +  + + S    T A++ NP   +A       +++    +EAI        
Sbjct: 36  LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE------- 88

Query: 69  VMKKILEFDPSNNQA 83
             +  L   P     
Sbjct: 89  HYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 6e-10
 Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 7/73 (9%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
                 + G FE + + C +     P     L+  +  H +    + +           
Sbjct: 4  ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH-------FS 56

Query: 71 KKILEFDPSNNQA 83
             ++ +P   +A
Sbjct: 57 TLAIKQNPLLAEA 69

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 6e-08
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 54
           HSN      + GK +E++    +A+ ++PT+  A        ++++
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++ G     L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 381 IASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLP------- 433

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 434 VLCQAHGLTPQQVVA 448

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 7/53 (13%), Positives = 16/53 (30%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            ++       L   +  +    +A  L P  + A+         LE     ++
Sbjct: 415 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLS 467

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++ G     L   +  +    +A  L P  + A+   +   + LE  +  +     L  
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP---VL-- 299

Query: 69  VMKKILEFDPSNNQA 83
              +     P    A
Sbjct: 300 --CQAHGLTPQQVVA 312

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 279 IASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP------- 331

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 332 VLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +     L  
Sbjct: 347 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP---VL-- 401

Query: 69  VMKKILEFDPSNNQA 83
              +     P    A
Sbjct: 402 --CQAHGLTPEQVVA 414

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.5 bits (139), Expect = 6e-11
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++ G     L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP------- 365

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 366 VLCQAHGLTPEQVVA 380

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 7e-11
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++ G     L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP------- 229

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 230 VLCQAHGLTPQQVVA 244

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++ G     L   +  +    +A  L P  + A+       + LE  +  +     L  
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP---VL-- 265

Query: 69  VMKKILEFDPSNNQA 83
              +     P    A
Sbjct: 266 --CQAHGLTPQQVVA 278

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.4 bits (131), Expect = 5e-10
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 75  IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP------- 127

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 128 VLCQAHGLTPEQVVA 142

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.4 bits (131), Expect = 5e-10
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLP------- 161

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 162 VLCQAHGLTPEQVVA 176

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP------- 195

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 196 VLCQAHGLTPQQVVA 210

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            + RG                   L L P  + A+       + LE  +  +        
Sbjct: 41  IAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLP------- 93

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 94  VLCQAHGLTPQQVVA 108

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.8 bits (146), Expect = 3e-12
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G+C    G  +E++ +     E +P +  A       +   E+ E+A+  +     
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML----- 216

Query: 69  VMKKILEFDPSNNQA 83
              K ++  P +  A
Sbjct: 217 --DKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.7 bits (143), Expect = 9e-12
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           +   G  ++    ++E+     KAL                  KLE  + A+  +     
Sbjct: 94  YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL----- 148

Query: 69  VMKKILEFDPSNNQA 83
             ++ +E + ++ +A
Sbjct: 149 --QRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.9 bits (141), Expect = 2e-11
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G   +KL + + ++    +A+ELN    +A  +           +EA++       
Sbjct: 128 FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS------- 180

Query: 69  VMKKILEFDPSNNQA 83
               + E DP +  A
Sbjct: 181 QFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           + N       + + E ++    KALEL+ +   A       +   E ++EA  
Sbjct: 60  YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD 112

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.1 bits (131), Expect = 5e-10
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 2  AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
          + + S+    +     + G +E++ +  TKA+E N       I  A     +   E A+A
Sbjct: 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALA 78

Query: 62 GIQDLMIVMKKILEFDPSNNQA 83
                    K LE D S   A
Sbjct: 79 FY-------DKALELDSSAATA 93

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 55
             N G+ +      E++++   KA+++ P +M AL  +        H
Sbjct: 196 FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 58.4 bits (140), Expect = 4e-12
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 18/110 (16%)

Query: 4   LRSICHSNRGICFLKLGKFEESIKECTKAL-------ELNP----TYMKALIRRAEAHEK 52
             + CH+        L  F+E++    KAL       ELN      ++ A+  RA A + 
Sbjct: 55  FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDG 114

Query: 53  LEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102
           L    EA+          KK++E             R+  +A +++ ++ 
Sbjct: 115 LGRGAEAMPE-------FKKVVEMIEERKGETPGKERMMEVAIDRIAQLG 157

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 16/119 (13%)

Query: 1   MAELRSICHSN----RGICFLKLGKFEESIKECTKALELNPTY------------MKALI 44
           M  L+ +  +          L  G+++E+   C +A+E++ T                  
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHA 61

Query: 45  RRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
             AEA   L  F+EA+      +    +  E +    +   + +  + LA + L +  E
Sbjct: 62  GLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE 120

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 59.6 bits (145), Expect = 6e-12
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            +  GI   + G F+ + +     LEL+PTY  A + R  A       + A         
Sbjct: 80  FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD------- 132

Query: 69  VMKKILEFDPSNNQA 83
            +    + DP++   
Sbjct: 133 DLLAFYQDDPNDPFR 147

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 5   RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
           R+     RG+ +  LG    +  + ++AL + P   +          +  +F+ A     
Sbjct: 42  RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE--- 98

Query: 65  DLMIVMKKILEFDPSNNQA 83
                   +LE DP+ N A
Sbjct: 99  ----AFDSVLELDPTYNYA 113

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           H NRGI     G+ + +  +     + +P      +    A +KL+  +      Q    
Sbjct: 114 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF-- 171

Query: 69  VMKKILEFDPSNNQA 83
             +K  +     N  
Sbjct: 172 --EKSDKEQWGWNIV 184

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 8/53 (15%), Positives = 16/53 (30%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           +   G  +L LG  + +      A+  N                L   ++ +A
Sbjct: 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 9/75 (12%), Positives = 18/75 (24%), Gaps = 8/75 (10%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G    +    E    + T    L     +      + +  L   + A A       
Sbjct: 185 EFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA------- 236

Query: 69  VMKKILEFDPSNNQA 83
           + K  +  +  N   
Sbjct: 237 LFKLAVANNVHNFVE 251

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 58.2 bits (142), Expect = 7e-12
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G+    LG+F+E+I     AL L P   K     A ++E++   EEA+        
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP------- 165

Query: 69  VMKKILEFDPSNNQAKRTILR 89
             KK  E D   +     + R
Sbjct: 166 HFKKANELDEGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.8 bits (141), Expect = 1e-11
 Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
             + GI ++K G  +   +   ++L   P  +K        + +++ ++ A+        
Sbjct: 45  ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP------- 97

Query: 69  VMKKILEFDPSNNQA 83
           ++ K+ E +P N   
Sbjct: 98  LLIKVAEANPINFNV 112

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 5e-11
 Identities = 9/77 (11%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 7  ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66
          + + ++GI   K G++ +++    +  + +   +   +    A+ K    +     +   
Sbjct: 9  VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL--- 65

Query: 67 MIVMKKILEFDPSNNQA 83
              ++ L   P N + 
Sbjct: 66 ----ERSLADAPDNVKV 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 6e-11
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            +  G+ ++++ K++ ++    K  E NP       R   A + L  F+EAI 
Sbjct: 79  ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 58.8 bits (143), Expect = 8e-12
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           + N+GIC  K G+F  +     ++L   P +  A    A          +A  
Sbjct: 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 9/53 (16%), Positives = 25/53 (47%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           +   + +++   + ++      AL+ +P    A + RAE ++ L+  ++A  
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 15/61 (24%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH--------EKLEHFEEAI 60
             R   +  L   +++ +   +AL + P         AE +         +L    E++
Sbjct: 45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDS-------AEINNNYGWFLCGRLNRPAESM 97

Query: 61 A 61
          A
Sbjct: 98 A 98

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 9   HSNRGICFLK--LGKFEESIKECTKALE--LNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
           ++N G  FL   L +  ES+    KAL     PT   A + +     K   F  A A   
Sbjct: 79  NNNYGW-FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA--- 134

Query: 65  DLMIVMKKILEFDPSNNQA 83
                +K+ L   P    A
Sbjct: 135 ----YLKRSLAAQPQFPPA 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 58.7 bits (143), Expect = 8e-12
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            S     +L +G+ +E++ +  KALE  P  +   +R A A       EEA  
Sbjct: 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
              G+    LG+++ ++    +AL+ NP   +AL   A    KL     A+ 
Sbjct: 8  PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           H  RG+ +  LG+ +++     +AL L     +     AE +  +   +EA+A
Sbjct: 121 HLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALA 172

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 18/87 (20%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-----------F 56
                    LKLG    +++     +   P Y+   +  +EA+  L              
Sbjct: 41  ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL 100

Query: 57  EEAIAGIQDLMIVMKKILEFDPSNNQA 83
           E+A++       V+K     +P     
Sbjct: 101 EQALS-------VLKDAERVNPRYAPL 120

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 9   HSNRGICFLKL-----------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 57
           +      ++ L           G  E+++     A  +NP Y    ++R   +  L   +
Sbjct: 76  YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135

Query: 58  EAIA 61
           +A A
Sbjct: 136 KAEA 139

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 7/75 (9%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
              G+  LKL    E+        +  P   +A         + E    AI        
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAII------- 76

Query: 69 VMKKILEFDPSNNQA 83
           +      DP +   
Sbjct: 77 ALNHARMLDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 9/75 (12%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            +  G       + +E++    +AL++NP Y++ +   A ++  +  ++ A   +     
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL----- 263

Query: 69  VMKKILEFDPSNNQA 83
              + +         
Sbjct: 264 --VRAIYMQVGGTTP 276

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
             + G+   +  K   +I     A  L+P  +      A +H    +   A+A
Sbjct: 58  WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA 110

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 8/53 (15%), Positives = 21/53 (39%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           H++ G+ +     ++ +     +A+EL P   +   +           +EA+ 
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 9/59 (15%), Positives = 21/59 (35%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           ++  +   +    F    ++ E       ALE+NP   +        +    +++ A A
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 3/65 (4%), Positives = 17/65 (26%), Gaps = 12/65 (18%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE------------AHEKLEHF 56
             N  + +  + +++ + K+  +A+ +           +                 +   
Sbjct: 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302

Query: 57  EEAIA 61
           +    
Sbjct: 303 DLVEL 307

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 5/55 (9%), Positives = 13/55 (23%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
           H+   +          ++      L   P Y +      +A   ++         
Sbjct: 92  HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G+  LK G    +I     A+  +P   +A         + E+ + AI        
Sbjct: 68  AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV------- 120

Query: 69  VMKKILEFDPSNNQA 83
            +++ LE  P+N +A
Sbjct: 121 ALQRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            +  G       + EE+++  T+ALE+ P ++++      +   L  + EA++
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
               GI   +    + +I    + LEL P  +KAL+  A ++    H ++A  
Sbjct: 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 12/53 (22%), Positives = 19/53 (35%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            +  G+ F   G+F  +I     AL + P       R        +  EEA+ 
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 3/53 (5%), Positives = 16/53 (30%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
                + +      +++ +     ++ NP Y   +  +  +        ++  
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 12/82 (14%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA------------EAHEKLEHF 56
             N GI  + LG + E++     AL L                         A   ++  
Sbjct: 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343

Query: 57  EEAIAGIQDLMIVMKKILEFDP 78
           E   A     + V+ +    DP
Sbjct: 344 ELFQAANLGDLDVLLRAFNLDP 365

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 12/65 (18%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE------------KLEHF 56
             N+        +  +S  + +    +   Y++A  +  +  +                F
Sbjct: 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229

Query: 57  EEAIA 61
             AI 
Sbjct: 230 NRAID 234

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 55.5 bits (135), Expect = 3e-11
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI        
Sbjct: 4  WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE------- 56

Query: 69 VMKKILEFDPSNNQA 83
            +K LE DP + +A
Sbjct: 57 YYQKALELDPRSAEA 71

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 55.1 bits (134), Expect = 4e-11
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
             N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI        
Sbjct: 72  WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE------- 124

Query: 69  VMKKILEFDPSN 80
             +K LE DP +
Sbjct: 125 YYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 53.9 bits (131), Expect = 1e-10
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI 
Sbjct: 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 57.1 bits (138), Expect = 3e-11
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           E+ S   +   + + K   ++++     + L+  P  +  L   AE        ++A+  
Sbjct: 51  EISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR- 109

Query: 63  IQDLMIVMKKILEFDPSNNQA 83
                 + +KIL+ +  N  A
Sbjct: 110 ------MYEKILQLEADNLAA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA-HEKLEHFEEAIAGIQDL 66
           C        +  G+ +++++   K L+L    + A I      +   E  ++ +      
Sbjct: 90  CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE----- 144

Query: 67  MIVMKKILEFDPSNNQA 83
                K L        A
Sbjct: 145 --TDYKKLSSPTKMQYA 159

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.4 bits (113), Expect = 8e-08
 Identities = 13/89 (14%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 9   HSNRG-ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
           +   G   +L   + ++ ++   K L        A  R   +      +E+A        
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARN------ 178

Query: 68  IVMKKILEFDPSNNQAKRTILRLQPLAEE 96
             ++K++   P + +A++T+ ++  + +E
Sbjct: 179 -SLQKVILRFP-STEAQKTLDKILRIEKE 205

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 23/91 (25%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTY----------------MKALIRRAEAHEK 52
             +    ++ G+  +++    + + LN                    K     A A++K
Sbjct: 7  MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 53 LEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83
            ++++A           K++L+  P+N   
Sbjct: 67 NRNYDKAYL-------FYKELLQKAPNNVDC 90

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            N G  +  L    E+ K  T+++  +     A  +R   + + E ++ AI 
Sbjct: 40 CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 92

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 23/95 (24%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKAL-ELNPTYMKALIR---------------RAEA 49
           ++ +  RG+ + +  K++ +IK+  +AL +L    +                     A  
Sbjct: 71  AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130

Query: 50  HEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84
           + K E +++A          +            +K
Sbjct: 131 YAKKEEWKKAEE-------QLALATSMKSEPRHSK 158

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 10/83 (12%)

Query: 1  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
          M+ + +I   N G+       ++ ++   +   + +    +        +  L++  EA 
Sbjct: 1  MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAE 57

Query: 61 AGIQDLMIVMKKILEFDPSNNQA 83
                     + +  D     A
Sbjct: 58 KAFT-------RSINRDKHLAVA 73

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA-EAHEKLEHFE 57
           N    + K  +++++ ++   A  +      + I +A E   K + +E
Sbjct: 126 NIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE 173

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
             N G+  L++ K  ++ +   K+L LN       +  A+   K   +  A         
Sbjct: 144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ------- 196

Query: 69  VMKKILEFDPSNNQA 83
                 +    N ++
Sbjct: 197 YYDLFAQGGGQNARS 211

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           +   G+ +L+ G  E++     KALE++P+   A    A   +     + A         
Sbjct: 40  YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADE------- 92

Query: 69  VMKKILEFDPSNNQA 83
             +K L  D  N + 
Sbjct: 93  EYRKALASDSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 5/77 (6%), Positives = 21/77 (27%), Gaps = 7/77 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
                    K  ++  + +      +      ++L+      +  E  + A +       
Sbjct: 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS------- 230

Query: 69  VMKKILEFDPSNNQAKR 85
              ++    P + + + 
Sbjct: 231 YGLQLKRLYPGSLEYQE 247

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 9/77 (11%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALE--LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66
            +N G    +  ++EE+ +   +A +  L P   +          +++   +A       
Sbjct: 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE----- 162

Query: 67  MIVMKKILEFDPSNNQA 83
               +K L  + +    
Sbjct: 163 --YFEKSLRLNRNQPSV 177

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           H+   + F    + + + +E  KAL  +    + L        + + +EEA  
Sbjct: 74  HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ 126

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 53.9 bits (131), Expect = 4e-11
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI 
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 47.8 bits (115), Expect = 1e-08
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH 50
            N G  + K G ++E+I+   KALEL+P         AEA 
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAK 80

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.9 bits (131), Expect = 9e-11
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
             N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI        
Sbjct: 46  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY----- 100

Query: 69  VMKKILEFDPSNNQA 83
             +K LE DP+N +A
Sbjct: 101 --QKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.9 bits (131), Expect = 1e-10
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI 
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 7/76 (9%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
             +N G  + KL  ++ +I    + L L+          A  +   +    AI       
Sbjct: 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT------ 571

Query: 68  IVMKKILEFDPSNNQA 83
             + + L   P+   A
Sbjct: 572 -HLHESLAISPNEIMA 586

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.1 bits (130), Expect = 7e-10
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           ++     GI +L + K  E+ +  +K+  ++P +  A I  A +       ++AI+
Sbjct: 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 7/54 (12%), Positives = 15/54 (27%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            +   G+  ++LG    + +    +  L       L             + AI 
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.4 bits (123), Expect = 7e-09
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 14/85 (16%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKALIRRAEAHEKLEHFEE 58
            +  +  G+        + +I     AL L          +         A+ KL+ ++ 
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534

Query: 59  AIAGIQDLMIVMKKILEFDPSNNQA 83
           AI         + + L    ++   
Sbjct: 535 AID-------ALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
              +        +F + +   TK LE++P  +        +  +     +          
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL------- 360

Query: 69  VMKKILEFDPSNNQA 83
           +   +++  P     
Sbjct: 361 ISNDLVDRHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 7/72 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
                  F   G+ +++I   T A  L        +     H +L +   A         
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE------- 462

Query: 69  VMKKILEFDPSN 80
            ++        +
Sbjct: 463 YLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 4e-07
 Identities = 8/44 (18%), Positives = 18/44 (40%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 52
           H+   + +L       +I    ++L ++P  + A      A E+
Sbjct: 553 HTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 4/57 (7%), Positives = 14/57 (24%)

Query: 5   RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
               +        + G+  +        ++ +P      +     +  +    EA  
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 7/76 (9%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
                 +            ++   ++         L+ +A+       F + +A      
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA------ 326

Query: 68  IVMKKILEFDPSNNQA 83
            +  KILE DP N   
Sbjct: 327 -ITTKILEIDPYNLDV 341

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 29/94 (30%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           +L +     RG  +  L  F+ + +   +AL ++    +A  +    H      E  +  
Sbjct: 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVL 256

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEE 96
             +     K+   F  S    K      +     
Sbjct: 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 53.0 bits (128), Expect = 1e-10
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 7/76 (9%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
                  LK      ++    + +E +P Y+       + +E+L+  ++AI        
Sbjct: 10 RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID------- 62

Query: 69 VMKKILEFDPSNNQAK 84
             + +E        K
Sbjct: 63 TYAQGIEVAREEGTQK 78

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.2 bits (135), Expect = 1e-10
 Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP------- 688

Query: 69  VMKKILEFDPSNNQA 83
           V+ +          A
Sbjct: 689 VLCQAHGLTQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP------- 281

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 282 VLCQAHGLTPDQVVA 296

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 6e-10
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++ G     L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 534 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP------- 586

Query: 69  VMKKILEFDPSNNQA 83
           V+ +          A
Sbjct: 587 VLCQAHGLTQVQVVA 601

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 7e-10
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++ G     L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLP------- 349

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 350 VLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 7/85 (8%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP------- 383

Query: 69  VMKKILEFDPSNNQAKRTILRLQPL 93
           V+ +     P    A  +    Q L
Sbjct: 384 VLCQAHGLTPDQVVAIASNGGKQAL 408

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 7/54 (12%), Positives = 17/54 (31%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
             ++ G     L   +  +    +A  L    + A+       + LE  +  + 
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLP 620

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLP------- 315

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 316 VLCQAHGLTPDQVVA 330

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 7/53 (13%), Positives = 17/53 (32%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            ++ G     L   +  +    +A  L    + A+       + LE  +  + 
Sbjct: 670 IASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLP 722

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 5e-09
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP------- 756

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P+   A
Sbjct: 757 VLCQAHGLTPAQVVA 771

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 6/53 (11%), Positives = 17/53 (32%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            ++       L   +  +    +   L P  + A+       + LE  ++ + 
Sbjct: 432 IASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLP 484

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLP------- 247

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 248 VLCQAHGLPPDQVVA 262

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP------- 552

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 553 VLCQAHGLTPDQVVA 567

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 11/95 (11%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLP------- 654

Query: 69  VMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
           V+ +     P    A    +      ++ LE ++ 
Sbjct: 655 VLCQAHGLTPDQVVA----IASNGGGKQALETVQR 685

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   ++ +    +A  L P  + A+       + L   +  +        
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLP------- 518

Query: 69  VMKKILEFDPSNNQA 83
           V+ +     P    A
Sbjct: 519 VLCQAHGLTPDQVVA 533

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 4e-07
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++ G     L   +  +    +A  L P  + A+       + LE  +  +        
Sbjct: 738 IASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLP------- 790

Query: 69  VMKKILEFDPSNNQA 83
           V+ +      +   A
Sbjct: 791 VLCQDHGLTLAQVVA 805

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++ G     L   +  +    +A  L P  + A+       + LE  +  +  +     
Sbjct: 399 IASNGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL----- 452

Query: 69  VMKKILEFDPSNNQA 83
              +     P+   A
Sbjct: 453 --CQTHGLTPAQVVA 465

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 7/75 (9%), Positives = 19/75 (25%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +   L P  + A+       + LE  +  +  +     
Sbjct: 840 IASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVL----- 894

Query: 69  VMKKILEFDPSNNQA 83
              +          A
Sbjct: 895 --CQDHGLTLDQVVA 907

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 7/75 (9%), Positives = 19/75 (25%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            ++       L   +  +    +   L    + A+       + LE  +  +        
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLP------- 824

Query: 69  VMKKILEFDPSNNQA 83
           V+ +          A
Sbjct: 825 VLCQAHGLTQDQVVA 839

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 12/54 (22%), Positives = 18/54 (33%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
           +S  G     +G FE ++     AL L      ++       E      EA  G
Sbjct: 273 YSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            +N G    KL K+ E++    +AL L P            H  + +FE A+        
Sbjct: 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD------- 291

Query: 69  VMKKILEFDPSNNQA 83
                L     +  +
Sbjct: 292 YFHTALGLRRDDTFS 306

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.5 bits (124), Expect = 5e-09
 Identities = 5/54 (9%), Positives = 17/54 (31%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
                G+ +      + + +  ++AL + P     +        +   ++ A  
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 5/53 (9%), Positives = 16/53 (30%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
               G  F    + ++++     A +L       ++     +    + + A  
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 7   ICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           +     G  +L +G   E + +  +KA  L  TY  A I    +       ++A+A
Sbjct: 91  VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 16/84 (19%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELN---------PTYMKALIRRAEAHEKLEHFEEA 59
               G+   + G+++ + K    ALE             +   L        KL+ + EA
Sbjct: 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255

Query: 60  IAGIQDLMIVMKKILEFDPSNNQA 83
           +          ++ L   P N   
Sbjct: 256 LD-------YHRQALVLIPQNAST 272

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 7/74 (9%)

Query: 10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIV 69
           +          F+   K  +  +E +P +   L        +L    E          +
Sbjct: 26 VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFY-------L 78

Query: 70 MKKILEFDPSNNQA 83
            K+++  PSN  +
Sbjct: 79 SHKLVDLYPSNPVS 92

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 8/77 (10%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-EHFEEAIAGIQDL 66
           C        ++L K  E      K ++L P+   +       +  +    E A   +   
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS-- 115

Query: 67  MIVMKKILEFDPSNNQA 83
                K    + +   A
Sbjct: 116 -----KATTLEKTYGPA 127

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G+  L+ G    ++     A++ +P +M+A         + E    AI+       
Sbjct: 67  PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS------- 119

Query: 69  VMKKILEFDPSNNQA 83
            +++ LE  P N  A
Sbjct: 120 ALRRCLELKPDNQTA 134

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 10/53 (18%), Positives = 17/53 (32%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
               G    +  +   +I    + LEL P    AL+  A +        +A  
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            +  G       + EE++    +ALEL P Y+++      +   L    EA+ 
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
               G+ F   G++++++   T AL + P       +           EEA+A
Sbjct: 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 11/65 (16%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE-----------AHEKLEHF 56
              N GI  + LG   E+++   +AL +                        A   L   
Sbjct: 287 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346

Query: 57  EEAIA 61
           +   A
Sbjct: 347 DAYGA 351

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 9/90 (10%), Positives = 18/90 (20%), Gaps = 22/90 (24%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE---------------KL 53
                + F       ++ +     L   P Y   +    E                    
Sbjct: 135 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194

Query: 54  EHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83
             F E          +    +  DP++   
Sbjct: 195 SLFLEVKE-------LFLAAVRLDPTSIDP 217

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
            +SN G    ++   + +++  T+A+++NP +  A    A  H+   +  EAIA      
Sbjct: 79  AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA------ 132

Query: 68  IVMKKILEFDPSNNQA-------KRTILRLQPLAE--EKLEKMKEEMIGKLGNDFLLRFH 118
              +  L+  P    A        + +       E  +KL  +  + + K     +   H
Sbjct: 133 -SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHH 191

Query: 119 FLL 121
            +L
Sbjct: 192 SML 194

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           +N      + G  EE+++   KALE+ P +  A    A   ++    +EA+ 
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
            HSN      + GK +E++    +A+ ++PT+  A        ++++  + A+       
Sbjct: 45  AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQ------ 98

Query: 68  IVMKKILEFDPSNNQA 83
               + ++ +P+   A
Sbjct: 99  -CYTRAIQINPAFADA 113

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 52.8 bits (127), Expect = 5e-10
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 8/96 (8%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
               G C   LG +E++++  +    ++    +     AE H +L   + A +G      
Sbjct: 55  FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY---- 110

Query: 69  VMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEE 104
                     +    +    R      E +   K+ 
Sbjct: 111 ---SARALAAAQPAHEALAARAG-AMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 8/51 (15%), Positives = 20/51 (39%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            G    + GK++++ K       L+    +  +      + L  +E+A+ 
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ 73

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 52.1 bits (125), Expect = 5e-10
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 7/75 (9%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
              G+  LKL    E+        +  P   +A         + E    AI        
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII------- 72

Query: 69 VMKKILEFDPSNNQA 83
           +      DP +   
Sbjct: 73 ALNHARMLDPKDIAV 87

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 7/70 (10%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
             + G+   +  K   +I     A  L+P  +      A +H    +   A+A       
Sbjct: 54  WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA------- 106

Query: 69  VMKKILEFDP 78
            ++  L   P
Sbjct: 107 SLRAWLLSQP 116

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 9/53 (16%), Positives = 19/53 (35%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
              G  + +  +F+ ++     AL+ +PTY  A     +  +       A  
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           H NR         + E+++  ++A  L+P + +   R  +  E L      +        
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK--T 318

Query: 69  VMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMI 106
             KK+     S   A               +KM  E+ 
Sbjct: 319 KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELK 356

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 8   CHSNRGICFLKLGKF-EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
               +G        +  E+    +KA++L P  ++A  +  E + K      A  
Sbjct: 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.4 bits (107), Expect = 8e-07
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE--HFEEAIAGIQDL 66
            +  G  + K G    +    + AL        +L   +    +L+    +E    + D 
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDS 198

Query: 67  MIVMKKILEFDPSNNQA 83
           +   K  ++ D  + ++
Sbjct: 199 VRQAKLAVQMDVLDGRS 215

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 18/87 (20%)

Query: 9   HSNRGICFL--------KLGKFEESIKECTKALELN---PTYMKALIRRAEAHEKLEHFE 57
               G  +L             ++++    +A +++    +     + RA  H+  E + 
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275

Query: 58  EAIAGIQDLMIVMKKILEFDPSNNQAK 84
           EA+ G         +    DP+  + +
Sbjct: 276 EALEGF-------SQAAALDPAWPEPQ 295

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 20  GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF-EEAIAGIQDLMIVMKKILEFDP 78
            + E+++++  + L       +AL+ + +A      +  EA         ++ K ++ +P
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEV-------LLSKAVKLEP 134

Query: 79  SNNQA 83
              +A
Sbjct: 135 ELVEA 139

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 7/83 (8%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
            +  G       +  E+     +A +  P +    +    A E     E A A       
Sbjct: 60  VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA------- 112

Query: 69  VMKKILEFDPSNNQAKRTILRLQ 91
              +  +  P        +L  +
Sbjct: 113 AYTRAHQLLPEEPYITAQLLNWR 135

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 7/76 (9%)

Query: 8  CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
                   L +G          + L L+P + +A+ R        +   EA        
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV------ 78

Query: 68 IVMKKILEFDPSNNQA 83
           ++++  +  P +   
Sbjct: 79 -LLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 8/59 (13%), Positives = 16/59 (27%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
               G      G+ E +    T+A +L P       +      +L  +         + 
Sbjct: 94  ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 7/64 (10%)

Query: 20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79
                + +   A+   P    A +  A+A   +         +Q       + L   P 
Sbjct: 3  ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQ-------RGLALHPG 55

Query: 80 NNQA 83
          + +A
Sbjct: 56 HPEA 59

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 50.9 bits (121), Expect = 8e-09
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           SI +  + +  L  GK +ES +     ++L  +++   +   + +E      EA      
Sbjct: 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAY-- 333

Query: 66  LMIVMKKILEFDPSNNQA 83
                       P  N  
Sbjct: 334 -----LTAFNLRPGANTL 346

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.1 bits (114), Expect = 9e-08
 Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 10  SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIV 69
            +R +    L    + ++     L  +     A   R    ++ + ++  +  +      
Sbjct: 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV------ 223

Query: 70  MKKILEFDPSNNQA--KRTILRLQPLAEEKLEKMKEEM 105
             ++L+ D  NN    +R  +            ++ E+
Sbjct: 224 -DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 260

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 13/125 (10%), Positives = 44/125 (35%), Gaps = 9/125 (7%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
              +R     +   ++  ++   + L+ +        +R         + +     +++ 
Sbjct: 202 AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261

Query: 68  IVMKKILEFDPSNNQA---KRTILRLQPLAE-----EKLEKMKEEMIGKLGNDFLLRFHF 119
             ++ I +  P N  A    + IL+ + L++      +L  ++          FL+  + 
Sbjct: 262 YTLEMI-KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 320

Query: 120 LLIKK 124
            +++ 
Sbjct: 321 DMLEN 325

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 11/93 (11%)

Query: 11  NRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIV 69
            R +    L K   E +   T  +E  P   +    R    E L    + +         
Sbjct: 136 FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE-------F 188

Query: 70  MKKILEFDPSNNQA---KRTILRLQPLAEEKLE 99
           +  IL  D  N  A   ++ +++   L + +L+
Sbjct: 189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ 221

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 7/94 (7%), Positives = 26/94 (27%), Gaps = 15/94 (15%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
                  +    +F+++      A  L       +    +   +L+   +A         
Sbjct: 73  IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE------- 125

Query: 69  VMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102
             + +++         +        A+  L+ ++
Sbjct: 126 CFELVIQHSNDEKLKIK--------AQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 7/73 (9%)

Query: 11  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
           +    F   G+ EE+          +   +  ++  A  ++  E F++A         + 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD-------LY 93

Query: 71  KKILEFDPSNNQA 83
                   ++   
Sbjct: 94  AVAFALGKNDYTP 106

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 9/54 (16%), Positives = 21/54 (38%)

Query: 8  CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
          C+   G  F  LG++ ++       ++  P +    +  A     L  +E+ + 
Sbjct: 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
                G C   +G+++ +I   +    ++    +     AE   +     EA +G+    
Sbjct: 57  FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF--- 113

Query: 68  IVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEE 104
                  E   +  +      R+     E ++  KE 
Sbjct: 114 ----LAQELIANXPEFXELSTRVS-SMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 5/51 (9%), Positives = 17/51 (33%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
          +      + G +E++         L+    +  +      + +  ++ AI 
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH 76

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPT-YMKALIRRAEAHEKLEHFEEAIA 61
                +  G  E +++   + L+  P    +A      A+ KL  +++A+ 
Sbjct: 5  KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN 56

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 54
          +   G  + KLG +++++     A+ELNP          +A + + 
Sbjct: 38 YYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA-----LQARKMVM 78

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 9   HSNRGICFLKLGK--FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66
               G   LK G    E +     KALE  P   +     A A  +L+++  +   I  L
Sbjct: 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198

Query: 67  MIVMKKILEFDPSNNQAK 84
               ++ +  +P N   K
Sbjct: 199 ----RQAIRLNPDNQYLK 212

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 9   HSNRGICFLKLGKF---EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
            S   I   +L  +   + +I    +A+ LNP      +  A    K+    E      +
Sbjct: 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG---E 231

Query: 66  LMIVMKKILEFDPSNNQA 83
              ++++ LE  P     
Sbjct: 232 GEKLVEEALEKAPGVTDV 249

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 12/87 (13%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK------------LEHF 56
             +    + +  + +++I+   KALE  P       +    +              +   
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 57  EEAIAGIQDLMIVMKKILEFDPSNNQA 83
            + +  I   +  +KK  E + +  + 
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRV 336

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 15/99 (15%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKA------LIRRAEAHEKLEHFEEAIA 61
             S          ++EE+     K      T +                 K E  ++AI 
Sbjct: 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE--DKAIH 393

Query: 62  GIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEK 100
                     + ++ +  + + ++   +LQ +A+ +L K
Sbjct: 394 -------HFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 9   HSNRGICFLKL----GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
                +   K+     +  E  K   +ALE  P     L   A+ + + +  ++AI    
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE--- 268

Query: 65  DLMIVMKKILEFDPSNNQA 83
               ++KK LE+ P+N   
Sbjct: 269 ----LLKKALEYIPNNAYL 283

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 9/53 (16%), Positives = 21/53 (39%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
            + +  C +  G++E +     +AL+ +  + + LI      + L    E   
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 22  FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81
             ++     KAL L+   + AL+  A       ++ +AI        + +K+++ +    
Sbjct: 97  TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-------LWQKVMDLNSPRI 149

Query: 82  QAKRTILRLQPLAEEKLEKMKEE 104
                ++    +A+    +   E
Sbjct: 150 NR-TQLVESINMAKLLQRRSDLE 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.7
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.6
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.58
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.58
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.57
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.55
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.55
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.54
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.54
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.54
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.54
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.53
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.53
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.53
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.53
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.52
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.52
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.52
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.51
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.5
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.48
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.46
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.46
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.46
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.45
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.44
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.44
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.43
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.43
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.42
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.41
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.41
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.4
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.39
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.38
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.38
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.37
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.37
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.36
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.36
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.35
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.35
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.34
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.34
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.33
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.32
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.29
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.27
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.26
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.26
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.26
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.24
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.24
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.24
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.23
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.23
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.23
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.21
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.2
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.2
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.2
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.19
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.19
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.19
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.18
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.18
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.18
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.18
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.16
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.16
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.15
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.14
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.14
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.13
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.13
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.12
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.11
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.1
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.1
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.09
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.04
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.03
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.02
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.99
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.98
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.98
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.96
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.92
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.92
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.91
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.9
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.82
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.81
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.8
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.76
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.75
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.75
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.75
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.75
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.74
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.74
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.73
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.72
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.72
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.7
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.69
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.69
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.68
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.67
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.66
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.66
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.65
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.65
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.65
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.65
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.64
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.63
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.62
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.61
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.61
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.59
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.58
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.58
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.56
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.55
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.53
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.53
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.52
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.5
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.5
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.46
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.44
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.4
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.37
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.35
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.31
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.27
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.24
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.21
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.06
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.04
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.95
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.86
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.86
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.81
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.78
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.71
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.71
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.68
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.66
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.58
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.56
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.5
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.46
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.45
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.4
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.33
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.16
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.01
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.93
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.89
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.87
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.77
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.52
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.43
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.28
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.93
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.57
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	94.66
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.4
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.33
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.59
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	93.36
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.3
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	92.63
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	92.47
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	92.04
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	91.79
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	90.82
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.3
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	89.33
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.55
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	85.99
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	84.72
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	84.71
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	82.76
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	81.92
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.79

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.77  E-value=2e-17  Score=106.28  Aligned_cols=95  Identities=15%  Similarity=0.178  Sum_probs=91.0

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      |+|..+..+.++|..+++.|+|++|+..|++++.++|.++.+|+++|.++..+|++++|+..       |+++++++|++
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~al~~~p~~   80 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD-------CDTCIRLDSKF   80 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTC
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHH-------HHHHHHhhhhh
Confidence            67999999999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++..++.++..+++..++..
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~  102 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQR  102 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999988876665

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.71  E-value=6.1e-17  Score=103.98  Aligned_cols=83  Identities=25%  Similarity=0.499  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.++.++|++++|+.+|++++.++|+++.+|+++|.++..+|++++|+..       |+++++++|++.
T Consensus        43 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~al~l~P~~~  115 (126)
T 4gco_A           43 DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRA-------YEDALQVDPSNE  115 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHCcCCH
Confidence            5778899999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHH
Q 033182           82 QAKRTILRLQ   91 (125)
Q Consensus        82 ~~~~~l~~~~   91 (125)
                      ++...++.+.
T Consensus       116 ~a~~~l~~~l  125 (126)
T 4gco_A          116 EAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999888764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.70  E-value=2e-16  Score=105.11  Aligned_cols=95  Identities=11%  Similarity=-0.033  Sum_probs=90.8

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|....+++++|.++.+.|+|++|+..|++++.++|.++.+|+++|.++..+|+|++|+..       |+++++++|++
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~-------~~~al~l~P~~  103 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL-------YAVAFALGKND  103 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSSSC
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHH-------HHHHHhhCCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +.++..++.++..+++..++..
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~  125 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKE  125 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999988877665

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.66  E-value=8e-16  Score=101.48  Aligned_cols=92  Identities=24%  Similarity=0.298  Sum_probs=84.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+|+|.||.++|+|++|+.++++++.++|+++.+|+++|.++..+|++++|+..       |+++++++|+++
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~-------~~~al~l~p~~~  131 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEED-------LKLLLRNHPAAA  131 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHH-------HHHHHhcCCCCH
Confidence            4667789999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             -HHHHHHHHHHHHHHHHHHH
Q 033182           82 -QAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        82 -~~~~~l~~~~~~~~~~~~~  100 (125)
                       .+...+..+...+.+..+.
T Consensus       132 ~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A          132 SVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence             7788888888777765443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.64  E-value=1.2e-15  Score=100.39  Aligned_cols=91  Identities=13%  Similarity=0.054  Sum_probs=85.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+..++++|.+|++.|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+..       |+++++++|+++
T Consensus        27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~   99 (150)
T 4ga2_A           27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC-------YRRSVELNPTQK   99 (150)
T ss_dssp             HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH-------HHHHHHhCCCCH
Confidence            4677888999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLE   99 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~   99 (125)
                      .++..++.++...++..+
T Consensus       100 ~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A          100 DLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHHHHcCChHH
Confidence            999999999888776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.63  E-value=5e-16  Score=104.32  Aligned_cols=91  Identities=23%  Similarity=0.312  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCCChHHH----HHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKAL----IRRAEAHEKLEHFEEAIAGIQDLMIVMK   71 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------~p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~~~~~~~   71 (125)
                      |.++.+|.|+|.++.++|+|++|+.+|++++.+       +|+++++|    +++|.++..+|++++|+..       |+
T Consensus        54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~-------y~  126 (159)
T 2hr2_A           54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE-------FK  126 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HH
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH-------HH
Confidence            345679999999999999999999999999999       99999999    9999999999999999999       99


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182           72 KILEFDPSNNQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        72 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  100 (125)
                      ++++++|++..+...+..+.+.+.++...
T Consensus       127 kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A          127 KVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888766543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.9e-14  Score=89.45  Aligned_cols=93  Identities=23%  Similarity=0.252  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+..|.++|..+++.|+|++|+..|++++.++|+++.+++++|.++..+|++++|+..       ++++++++|++..
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~al~~~p~~~~   73 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD-------CNKAIEKDPNFVR   73 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCcHH
Confidence            356788999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus        74 ~~~~lg~~~~~~~~~~~A~~   93 (126)
T 3upv_A           74 AYIRKATAQIAVKEYASALE   93 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCHHHHHH
Confidence            99999999988887766654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.61  E-value=1.2e-14  Score=95.44  Aligned_cols=95  Identities=8%  Similarity=-0.029  Sum_probs=89.4

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|.....++++|.++...|+|++|+..|++++.++|.++.+|+++|.++..+|++++|+..       |+++++++|++
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~l~p~~   88 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS-------YSYGAVMDIXE   88 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTC
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCC
Confidence            35788899999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +.++..++.++...++..++..
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAES  110 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999998887776655

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.60  E-value=1.7e-14  Score=93.45  Aligned_cols=95  Identities=11%  Similarity=0.013  Sum_probs=89.3

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++|.....++++|.++++.|+|++|+..|++++..+|+++.+|+.+|.++..+|++++|+..       |+++++++|++
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~   85 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQS-------YSYGALMDINE   85 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCC
Confidence            35788899999999999999999999999999999999999999999999999999999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +.++..++.++...++..++..
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAES  107 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999998887776655

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.58  E-value=6.4e-14  Score=103.14  Aligned_cols=100  Identities=38%  Similarity=0.563  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +....+|+++|.++.++|+|++|+..|++++.++|+++.+++++|.++..+|++++|+..       |+++++++|++..
T Consensus       193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~l~P~~~~  265 (336)
T 1p5q_A          193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD-------FQKVLQLYPNNKA  265 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHCCCCHH
Confidence            455799999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHhhh
Q 033182           83 AKRTILRLQPLAEEKLEKMK---EEMIGKL  109 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~---~~~~~~~  109 (125)
                      ++..++.++..+++..++.+   ..++.++
T Consensus       266 a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          266 AKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999888776644   4455554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.2e-14  Score=91.78  Aligned_cols=85  Identities=26%  Similarity=0.401  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC----
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD----   77 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~----   77 (125)
                      +|..+.+|+++|.++.++|+|++|+..+++++.++|+++.+++++|.++..+|++++|+..       |+++++++    
T Consensus        34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~  106 (126)
T 3upv_A           34 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET-------LDAARTKDAEVN  106 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHH-------HHHHHHhCcccC
Confidence            4667899999999999999999999999999999999999999999999999999999999       99999999    


Q ss_pred             --CCcHHHHHHHHHHHHH
Q 033182           78 --PSNNQAKRTILRLQPL   93 (125)
Q Consensus        78 --p~~~~~~~~l~~~~~~   93 (125)
                        |++..+...+..+...
T Consensus       107 ~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A          107 NGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             TTTTHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHh
Confidence              9999999888887654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.58  E-value=1.5e-13  Score=94.34  Aligned_cols=89  Identities=17%  Similarity=0.114  Sum_probs=81.6

Q ss_pred             hhHHHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH
Q 033182            2 AELRSICHSN----------------RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD   65 (125)
Q Consensus         2 ~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~   65 (125)
                      +|..+.+|+.                +|.++.++|++++|+..|++++.++|+++.+++++|.++..+|++++|+..   
T Consensus        34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~---  110 (208)
T 3urz_A           34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRM---  110 (208)
T ss_dssp             CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH---
T ss_pred             CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH---
Confidence            4566677777                999999999999999999999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           66 LMIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        66 ~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                          |+++++++|++..++..++.++...++.
T Consensus       111 ----~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A          111 ----YEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             ----HHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence                9999999999999999999987655443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.57  E-value=2.3e-14  Score=91.75  Aligned_cols=93  Identities=17%  Similarity=0.159  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH-
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN-   81 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~-   81 (125)
                      +..+.++.++|..+++.|+|++|+..|++++.++|+++.+|.++|.++..+|+|++|+..       ++++++++|++. 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~-------~~~al~~~~~~~~   77 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF-------CEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHH-------HHHHHHhCcccch
Confidence            345678999999999999999999999999999999999999999999999999999999       999999988764 


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 ------QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ------~~~~~l~~~~~~~~~~~~~~~  102 (125)
                            .++..++.++..+++..++..
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~  104 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAVQ  104 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                  355666666666665555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.56  E-value=1.4e-13  Score=87.50  Aligned_cols=89  Identities=13%  Similarity=0.116  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      ..++++|..+.+.|++++|+..+++++..+|+++.+|+.+|.++..+|++++|+..       |+++++++|++..++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~l~P~~~~~~~~   90 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA-------LNHARMLDPKDIAVHAA   90 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999       99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           87 ILRLQPLAEEKLEKMK  102 (125)
Q Consensus        87 l~~~~~~~~~~~~~~~  102 (125)
                      ++.++...++..++..
T Consensus        91 la~~~~~~g~~~~A~~  106 (121)
T 1hxi_A           91 LAVSHTNEHNANAALA  106 (121)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            9999998888766654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.55  E-value=2.8e-13  Score=93.58  Aligned_cols=93  Identities=16%  Similarity=0.147  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.+++++|.++.+.|++++|+..|++++.++|+++.+++++|.++..+|++++|+..       |+++++++|++..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~~~P~~~~   74 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN-------GKTLVARTPRYLG   74 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcHH
Confidence            456789999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHH-----------HHHHHHHH
Q 033182           83 AKRTILRLQPLA-----------EEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~-----------~~~~~~~~  102 (125)
                      ++..++.++...           ++..++..
T Consensus        75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~  105 (217)
T 2pl2_A           75 GYMVLSEAYVALYRQAEDRERGKGYLEQALS  105 (217)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence            999999999888           77766654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.55  E-value=1.7e-13  Score=90.37  Aligned_cols=93  Identities=17%  Similarity=0.085  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +..+..|+++|.++++.|+|++|+..|++++.++|+++.+++++|.++..+|++++|+..       |+++++++|++..
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~~   80 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED-------AELATVVDPKYSK   80 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCCHH
Confidence            456788999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus        81 ~~~~lg~~~~~~g~~~~A~~  100 (164)
T 3sz7_A           81 AWSRLGLARFDMADYKGAKE  100 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHH
Confidence            99999999888877766654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.55  E-value=9.2e-14  Score=93.26  Aligned_cols=98  Identities=17%  Similarity=0.167  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------ChH-----HHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT-------YMK-----ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   72 (125)
                      .+..+.++|..+++.|+|++|+..|++++.++|+       +..     +|+++|.++..+|+|++|+..+.+++.+|.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3567899999999999999999999999999999       444     9999999999999999999996666666666


Q ss_pred             HHhhCCCcHHHH----HHHHHHHHHHHHHHHHHH
Q 033182           73 ILEFDPSNNQAK----RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        73 a~~l~p~~~~~~----~~l~~~~~~~~~~~~~~~  102 (125)
                      ..+++|++..++    ..++.+...+++..++..
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~  123 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMP  123 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence            666699999999    999999998887776655

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.54  E-value=2e-13  Score=83.61  Aligned_cols=84  Identities=15%  Similarity=0.189  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc----
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN----   80 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~----   80 (125)
                      .+..|+++|.++...|+|++|+..|++++.++|.++.+++++|.++..+|++++|+..       ++++++++|++    
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~~   75 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM-------CQQGLRYTSTAEHVA   75 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTSCSSTTSHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCccHHH
Confidence            4678999999999999999999999999999999999999999999999999999999       99999999998    


Q ss_pred             --HHHHHHHHHHHHHHH
Q 033182           81 --NQAKRTILRLQPLAE   95 (125)
Q Consensus        81 --~~~~~~l~~~~~~~~   95 (125)
                        ..++..++.+...++
T Consensus        76 ~~~~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           76 IRSKLQYRLELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence              667777776665554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.54  E-value=6.1e-14  Score=93.03  Aligned_cols=73  Identities=7%  Similarity=0.054  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.++..+|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+..       |++++++.|+.+
T Consensus        66 ~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~-------~~~al~l~~~~~  138 (151)
T 3gyz_A           66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKEC-------FELVIQHSNDEK  138 (151)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCHH
Confidence            5788999999999999999999999999999999999999999999999999999999999       999999999865

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.54  E-value=2e-13  Score=80.89  Aligned_cols=83  Identities=31%  Similarity=0.414  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+.+++++|.++...|++++|+..+++++..+|.++.+++++|.++...|++++|+..       ++++++++|++..+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~p~~~~~   79 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPNNAEA   79 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCCHHH
Confidence            46788999999999999999999999999999999999999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHH
Q 033182           84 KRTILRLQPL   93 (125)
Q Consensus        84 ~~~l~~~~~~   93 (125)
                      +..++.++..
T Consensus        80 ~~~l~~~~~~   89 (91)
T 1na3_A           80 KQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998887654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.54  E-value=6.9e-14  Score=106.91  Aligned_cols=93  Identities=32%  Similarity=0.500  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +....+|+|+|.||.++|+|++|+.+|++++.++|+++++++++|.++..+|+|++|+..       |+++++++|++..
T Consensus       314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~-------~~~al~l~P~~~~  386 (457)
T 1kt0_A          314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD-------FEKVLEVNPQNKA  386 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTC----C
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCCHH
Confidence            455789999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..+..++..+++..++.+
T Consensus       387 a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          387 ARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999998887766554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.53  E-value=5.7e-14  Score=92.67  Aligned_cols=89  Identities=24%  Similarity=0.284  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.+|...|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+..       |+++++++|++.
T Consensus        41 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~  113 (164)
T 3sz7_A           41 APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEA-------YEKGIEAEGNGG  113 (164)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHSSSC
T ss_pred             CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCch
Confidence            4667889999999999999999999999999999999999999999999999999999999       999999999988


Q ss_pred             H--HHHHHHHHHHHHHHH
Q 033182           82 Q--AKRTILRLQPLAEEK   97 (125)
Q Consensus        82 ~--~~~~l~~~~~~~~~~   97 (125)
                      .  ....+..+...+++.
T Consensus       114 ~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A          114 SDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            7  555555555555544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.53  E-value=3.6e-13  Score=89.70  Aligned_cols=90  Identities=18%  Similarity=0.255  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+++|+++|.+|.++|+|++|+..|+++++++|+++.+++.+|.++..+|++++|+..       +.+++..+|++..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~~~   76 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIES-------LKKFVVLDTTSAEAY   76 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCchhHHHH
Confidence            4689999999999999999999999999999999999999999999999999999999       888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKM  101 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~  101 (125)
                      ..++.+....++.....
T Consensus        77 ~~~~~~~~~~~~~~~a~   93 (184)
T 3vtx_A           77 YILGSANFMIDEKQAAI   93 (184)
T ss_dssp             HHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHH
Confidence            87777776655544333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.53  E-value=5.7e-14  Score=90.97  Aligned_cols=88  Identities=15%  Similarity=0.204  Sum_probs=79.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.++...|+|++|+..|++++.++|+++.+++++|.++..+|++++|+..       |+++++++|+++
T Consensus        48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~  120 (142)
T 2xcb_A           48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESG-------FYSARALAAAQP  120 (142)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHTCG
T ss_pred             CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCc
Confidence            4678899999999999999999999999999999999999999999999999999999999       999999999888


Q ss_pred             HHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEE   96 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~   96 (125)
                      ........+...++.
T Consensus       121 ~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A          121 AHEALAARAGAMLEA  135 (142)
T ss_dssp             GGHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH
Confidence            776666666555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.53  E-value=4.9e-14  Score=92.51  Aligned_cols=87  Identities=15%  Similarity=0.144  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.++...|+|++|+..|++++.++|+++.+++++|.++..+|++++|+..       |+++++++|+++
T Consensus        51 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~  123 (148)
T 2vgx_A           51 DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESG-------LFLAQELIANXP  123 (148)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHTTCG
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCCC
Confidence            4678899999999999999999999999999999999999999999999999999999999       999999999887


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAE   95 (125)
Q Consensus        82 ~~~~~l~~~~~~~~   95 (125)
                      ........+...+.
T Consensus       124 ~~~~~~~~~~~~l~  137 (148)
T 2vgx_A          124 EFXELSTRVSSMLE  137 (148)
T ss_dssp             GGHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHH
Confidence            76555555554444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.53  E-value=1.3e-14  Score=95.37  Aligned_cols=85  Identities=15%  Similarity=0.147  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.+|.++|++++|+..|+++++++|+++.+++++|.++..+|++++|...      .++++++++|+++
T Consensus        61 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~------~~~~al~l~P~~~  134 (150)
T 4ga2_A           61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY------WVERAAKLFPGSP  134 (150)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH------HHHHHHHHSTTCH
T ss_pred             CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH------HHHHHHHhCcCCH
Confidence            5778999999999999999999999999999999999999999999999999999887764      0589999999999


Q ss_pred             HHHHHHHHHHH
Q 033182           82 QAKRTILRLQP   92 (125)
Q Consensus        82 ~~~~~l~~~~~   92 (125)
                      .++.....+..
T Consensus       135 ~~~~l~~~ll~  145 (150)
T 4ga2_A          135 AVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99888877654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.53  E-value=1.6e-13  Score=110.58  Aligned_cols=94  Identities=17%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .|..+.+|+|+|.++.++|++++|+..|+++++++|+++.+++++|.++..+|++++|+..       |+++++++|++.
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~-------~~~Al~l~P~~~   77 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH-------YKEAIRISPTFA   77 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCH
Confidence            3667788888888888888888888888888888888888888888888888888888888       888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++..+++..++..
T Consensus        78 ~a~~nLg~~l~~~g~~~~A~~   98 (723)
T 4gyw_A           78 DAYSNMGNTLKEMQDVQGALQ   98 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHH
Confidence            888888888877776665544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.52  E-value=3.1e-13  Score=101.03  Aligned_cols=94  Identities=29%  Similarity=0.560  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ++....+|.++|.++.++|+|++|+.++++++.++|+++++++++|.++..+|++++|+..       |+++++++|++.
T Consensus       269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~-------l~~Al~l~P~~~  341 (370)
T 1ihg_A          269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD-------LKKAQEIAPEDK  341 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCCH
Confidence            4667899999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..+..+...+++..++.+
T Consensus       342 ~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          342 AIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988887766554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.52  E-value=2.9e-13  Score=93.53  Aligned_cols=94  Identities=16%  Similarity=0.116  Sum_probs=87.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----------hhHHHHHHhHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-----------EHFEEAIAGIQDLMIVM   70 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~~~~   70 (125)
                      +|..+.+++++|.++.+.|++++|+..+++++.++|+++.+++++|.++..+           |++++|+..       |
T Consensus        35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~-------~  107 (217)
T 2pl2_A           35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV-------L  107 (217)
T ss_dssp             SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH-------H
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH-------H
Confidence            5778899999999999999999999999999999999999999999999999           999999999       9


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           71 KKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        71 ~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +++++++|++..++..++.++...++..++..
T Consensus       108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~  139 (217)
T 2pl2_A          108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEA  139 (217)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence            99999999999999999999888777665544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.52  E-value=7.5e-14  Score=93.59  Aligned_cols=86  Identities=19%  Similarity=0.247  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-----------hHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKF----------EESIKECTKALELNPTYMKALIRRAEAHEKLE-----------HFEEAI   60 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-----------~~~~A~   60 (125)
                      +|.++.+|.++|.++.+.+++          ++|+..|+++++++|++..+|+++|.+|..+|           ++++|+
T Consensus        32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~  111 (158)
T 1zu2_A           32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  111 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence            578899999999999999876          59999999999999999999999999999985           899999


Q ss_pred             HhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182           61 AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA   94 (125)
Q Consensus        61 ~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~   94 (125)
                      .+       |++|++++|++......+..+.+..
T Consensus       112 ~~-------~~kAl~l~P~~~~y~~al~~~~ka~  138 (158)
T 1zu2_A          112 QF-------FQQAVDEQPDNTHYLKSLEMTAKAP  138 (158)
T ss_dssp             HH-------HHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HH-------HHHHHHhCCCCHHHHHHHHHHHhCH
Confidence            99       9999999999988777666554433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.51  E-value=2.1e-13  Score=86.58  Aligned_cols=94  Identities=20%  Similarity=0.142  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ++..+..++++|.+++..|+|++|+..|++++.++|+++.+++++|.++..+|++++|+..       ++++++++|++.
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~p~~~   77 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD-------CRRALELDGQSV   77 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCchhH
Confidence            3556889999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++...+..
T Consensus        78 ~~~~~l~~~~~~~~~~~~A~~   98 (137)
T 3q49_B           78 KAHFFLGQCQLEMESYDEAIA   98 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHH
Confidence            999999999988887766554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.50  E-value=2.8e-13  Score=84.93  Aligned_cols=79  Identities=14%  Similarity=0.164  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.++.++|.++..+|+|++|+..+++++.++|+++.+++++|.++..+|++++|+..       ++++++.+|+++
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~   95 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL-------LLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHCCCH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcH
Confidence            5788999999999999999999999999999999999999999999999999999999999       999999999998


Q ss_pred             HHHHHH
Q 033182           82 QAKRTI   87 (125)
Q Consensus        82 ~~~~~l   87 (125)
                      .+....
T Consensus        96 ~~~~~~  101 (117)
T 3k9i_A           96 TIQSYK  101 (117)
T ss_dssp             HHHHTH
T ss_pred             HHHHHH
Confidence            765433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.50  E-value=4.4e-13  Score=90.86  Aligned_cols=89  Identities=21%  Similarity=0.296  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      ..++.++|.++..+|+|++|+..+++++.++|+++.+++++|.++..+|++++|+..       |+++++++|++..++.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~  160 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN-------LYKAASLNPNNLDIRN  160 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH-------HHHHHHHCCCcHHHHH
Confidence            489999999999999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKLEKM  101 (125)
Q Consensus        86 ~l~~~~~~~~~~~~~~  101 (125)
                      .+..+...+++..+..
T Consensus       161 ~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          161 SYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998888776555

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.48  E-value=2.8e-13  Score=109.19  Aligned_cols=94  Identities=15%  Similarity=0.280  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+|+|.++.++|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..       |+++++++|++.
T Consensus        39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~-------~~kAl~l~P~~~  111 (723)
T 4gyw_A           39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQC-------YTRAIQINPAFA  111 (723)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCH
Confidence            4566788999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus       112 ~a~~~Lg~~~~~~g~~~eAi~  132 (723)
T 4gyw_A          112 DAHSNLASIHKDSGNIPEAIA  132 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHH
Confidence            999999999888877766654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.48  E-value=4.7e-13  Score=82.16  Aligned_cols=82  Identities=12%  Similarity=0.145  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS--   79 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--   79 (125)
                      +|..+.+++++|.++...|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+..       |++++++.|.  
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~l~~~~~   75 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT-------YAQGIEVAREEG   75 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHHS
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhhhcCC
Confidence            5778899999999999999999999999999999999999999999999999999999999       9999988764  


Q ss_pred             cHHHHHHHHHH
Q 033182           80 NNQAKRTILRL   90 (125)
Q Consensus        80 ~~~~~~~l~~~   90 (125)
                      +......+..+
T Consensus        76 ~~~~~~~l~~~   86 (100)
T 3ma5_A           76 TQKDLSELQDA   86 (100)
T ss_dssp             CHHHHHHHHHH
T ss_pred             chhHHHHHHHH
Confidence            33343344333

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.46  E-value=1e-13  Score=84.29  Aligned_cols=95  Identities=20%  Similarity=0.225  Sum_probs=86.9

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC-
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS-   79 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~-   79 (125)
                      ++|..+.+++++|.++...|++++|+..+++++.++|.+..+++++|.++..+|++++|+..       ++++++.+|+ 
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~a~~~~~~~   73 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC-------YNYVINVIEDE   73 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTSCCT
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCccc
Confidence            45677888999999999999999999999999999999999999999999999999999999       9999999999 


Q ss_pred             -cHHHHHHHHHHHHHH-HHHHHHHH
Q 033182           80 -NNQAKRTILRLQPLA-EEKLEKMK  102 (125)
Q Consensus        80 -~~~~~~~l~~~~~~~-~~~~~~~~  102 (125)
                       +..++..++.++... ++..++..
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~A~~   98 (112)
T 2kck_A           74 YNKDVWAAKADALRYIEGKEVEAEI   98 (112)
T ss_dssp             TCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCHHHHHH
Confidence             999999999998877 66554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.46  E-value=3.8e-12  Score=77.75  Aligned_cols=91  Identities=14%  Similarity=0.184  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+..++.+|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..       ++++++.+|++..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~   75 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED-------GCKTVDLKPDWGKGY   75 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHH-------HHHHHHhCcccHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++.++...++..++..
T Consensus        76 ~~~a~~~~~~~~~~~A~~   93 (118)
T 1elw_A           76 SRKAAALEFLNRFEEAKR   93 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHH
Confidence            999999888877665554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.46  E-value=3.7e-13  Score=85.42  Aligned_cols=89  Identities=21%  Similarity=0.412  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS--   79 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--   79 (125)
                      +|..+.+|+++|.++..+|++++|+..+++++.++|+++.+++++|.++..+|++++|+..       |+++++++|+  
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~p~~~  111 (137)
T 3q49_B           39 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN-------LQRAYSLAKEQR  111 (137)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHTT
T ss_pred             CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHChhHH
Confidence            3567889999999999999999999999999999999999999999999999999999999       9999999988  


Q ss_pred             ---cHHHHHHHHHHHHHHHHH
Q 033182           80 ---NNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        80 ---~~~~~~~l~~~~~~~~~~   97 (125)
                         +..+...+..+.......
T Consensus       112 ~~~~~~~~~~l~~~~~~~~~~  132 (137)
T 3q49_B          112 LNFGDDIPSALRIAKKKRWNS  132 (137)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence               777888888776655544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.46  E-value=1.7e-12  Score=85.33  Aligned_cols=91  Identities=13%  Similarity=0.097  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------CCCChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALEL------------------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDL   66 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~   66 (125)
                      .+..+.++|..+++.|+|++|+..|++++.+                  +|.+..+|+++|.++..+|+|++|+..    
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~----   85 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET----   85 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH----
Confidence            4678999999999999999999999999999                  788889999999999999999999999    


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           67 MIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                         +.++++++|++..++..++.++..+++..++..
T Consensus        86 ---~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  118 (162)
T 3rkv_A           86 ---SSEVLKREETNEKALFRRAKARIAAWKLDEAEE  118 (162)
T ss_dssp             ---HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ---HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence               999999999999999999999999988776655

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.45  E-value=3.1e-13  Score=101.62  Aligned_cols=91  Identities=16%  Similarity=0.070  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            2 AELRSICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +|....+|+++|.++..+|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+..       |+++++++|++
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~-------~~kal~ldP~~  199 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF-------IADILNQDAKN  199 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH-------HHHHHHHCTTC
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCccC
Confidence            35556677777777777775 77777777777777777777777777777777777777777       77777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLE   99 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~   99 (125)
                      ..++..++.+...+++..+
T Consensus       200 ~~a~~~lg~~~~~~g~~~e  218 (382)
T 2h6f_A          200 YHAWQHRQWVIQEFKLWDN  218 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHHHcCChHH
Confidence            7777777777666654443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.44  E-value=3.2e-12  Score=79.92  Aligned_cols=93  Identities=18%  Similarity=0.249  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +..+..|+++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..       ++++++.+|++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~   85 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD-------CEECIQLEPTFIK   85 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCCchH
Confidence            567789999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus        86 ~~~~la~~~~~~~~~~~A~~  105 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMD  105 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHH
Confidence            99999999988877766654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.44  E-value=4e-13  Score=85.31  Aligned_cols=74  Identities=19%  Similarity=0.135  Sum_probs=65.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.++...|++++|+..+++++.++|+++.+++++|.++..+|++++|+..       ++++++++|++.
T Consensus        47 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~P~~~  119 (121)
T 1hxi_A           47 EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS-------LRAWLLSQPQYE  119 (121)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHC------
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcCCC
Confidence            4778899999999999999999999999999999999999999999999999999999999       999999999875


Q ss_pred             H
Q 033182           82 Q   82 (125)
Q Consensus        82 ~   82 (125)
                      .
T Consensus       120 ~  120 (121)
T 1hxi_A          120 Q  120 (121)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.44  E-value=4.2e-13  Score=85.84  Aligned_cols=80  Identities=19%  Similarity=0.249  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      +|..+.+|.|+|.+|.++|+|++|+.++++++.++|++       +.+++++|.++..+|++++|+..       |++++
T Consensus        38 ~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~-------~~kal  110 (127)
T 4gcn_A           38 DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW-------FHRSL  110 (127)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHH
T ss_pred             CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHH
Confidence            57788999999999999999999999999999999876       46899999999999999999999       99999


Q ss_pred             hhCCCcHHHHHHHHH
Q 033182           75 EFDPSNNQAKRTILR   89 (125)
Q Consensus        75 ~l~p~~~~~~~~l~~   89 (125)
                      +.+|+ ++....+..
T Consensus       111 ~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A          111 SEFRD-PELVKKVKE  124 (127)
T ss_dssp             HHSCC-HHHHHHHHH
T ss_pred             hhCcC-HHHHHHHHH
Confidence            98886 444444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.44  E-value=2.8e-12  Score=87.98  Aligned_cols=90  Identities=13%  Similarity=0.122  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH----------------HHHHHHHchhHHHHHHhHHHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR----------------RAEAHEKLEHFEEAIAGIQDLMIV   69 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~~~~   69 (125)
                      +..+..+|..++..|+|++|+..|++++.++|+++.+++.                +|.++..+|++++|+..       
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------   76 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF-------   76 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH-------
Confidence            4568899999999999999999999999999999999999                99999999999999999       


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           70 MKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        70 ~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      |+++++++|++..++..++.++...++..++..
T Consensus        77 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  109 (208)
T 3urz_A           77 YKELLQKAPNNVDCLEACAEMQVCRGQEKDALR  109 (208)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999998887776655

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.43  E-value=1.1e-11  Score=76.86  Aligned_cols=94  Identities=21%  Similarity=0.264  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ++..+..+..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..       ++++++.+|++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~   80 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD-------CERAICIDPAYS   80 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHH-------HHHHHhcCccCH
Confidence            4677889999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~A~~  101 (131)
T 2vyi_A           81 KAYGRMGLALSSLNKHVEAVA  101 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHH
Confidence            999999999888877766655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.43  E-value=2.8e-12  Score=78.35  Aligned_cols=82  Identities=27%  Similarity=0.414  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.++.++|.++...|++++|+..+++++..+|+++.+++++|.++..+|++++|...       ++++++.+|+++.
T Consensus        35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~  107 (118)
T 1elw_A           35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT-------YEEGLKHEANNPQ  107 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTCTTCHH
T ss_pred             CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHcCCCCHH
Confidence            556789999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHH
Q 033182           83 AKRTILRLQ   91 (125)
Q Consensus        83 ~~~~l~~~~   91 (125)
                      ++..++.+.
T Consensus       108 ~~~~l~~~~  116 (118)
T 1elw_A          108 LKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            988888765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.43  E-value=2.5e-12  Score=79.97  Aligned_cols=89  Identities=13%  Similarity=0.129  Sum_probs=76.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS--   79 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--   79 (125)
                      +|..+.+++++|.++...|++++|+..|++++.++|.++.+++++|.++..+|++++|+..       |+++++++|+  
T Consensus        15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~~~~~   87 (115)
T 2kat_A           15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQA-------WESGLAAAQSRG   87 (115)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhccccc
Confidence            4667889999999999999999999999999999999999999999999999999999999       9999998874  


Q ss_pred             cHHHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~   97 (125)
                      +......+......++..
T Consensus        88 ~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           88 DQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccc
Confidence            445555555555544433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.43  E-value=2.2e-12  Score=88.61  Aligned_cols=92  Identities=18%  Similarity=0.151  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH--
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN--   81 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~--   81 (125)
                      ....+++++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..       ++++++++|++.  
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~  112 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIAT-------LTEGIKAVPGNATI  112 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTCHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHH-------HHHHHHHCCCcHHH
Confidence            55678889999999999999999999999999999999999999999999999999999       999999999999  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 -----QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 -----~~~~~l~~~~~~~~~~~~~~~  102 (125)
                           .++..++.+....++..++..
T Consensus       113 ~~~~~~~~~~~g~~~~~~~~~~~A~~  138 (228)
T 4i17_A          113 EKLYAIYYLKEGQKFQQAGNIEKAEE  138 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHhccHHHHHH
Confidence                 557777777766665555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.42  E-value=5.6e-12  Score=79.07  Aligned_cols=89  Identities=20%  Similarity=0.144  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc---
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN---   80 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~---   80 (125)
                      ..++++|.+++..|+|++|+..+++++..+|+++   .+++.+|.++..+|++++|+..       |+++++.+|++   
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~~~~~~p~~~~~   75 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQ-------FRDLVSRYPTHDKA   75 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTSTTH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHHCCCCccc
Confidence            3577889999999999999999999999999887   7999999999999999999999       99999999988   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +.++..++.++...++..++..
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~   97 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQ   97 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888888777666554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.41  E-value=6.1e-12  Score=92.51  Aligned_cols=94  Identities=20%  Similarity=0.225  Sum_probs=87.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---------------MKALIRRAEAHEKLEHFEEAIAGIQDL   66 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~   66 (125)
                      +|..+.++.++|.++++.|+|++|+..|++++.++|.+               ..+++++|.++..+|+|++|+..    
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~----  218 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES----  218 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH----
Confidence            45678899999999999999999999999999999998               69999999999999999999999    


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           67 MIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                         |+++++++|++..++..++.++..+++..++..
T Consensus       219 ---~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  251 (336)
T 1p5q_A          219 ---CNKALELDSNNEKGLSRRGEAHLAVNDFELARA  251 (336)
T ss_dssp             ---HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ---HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence               999999999999999999999988887766654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.41  E-value=3.9e-12  Score=78.93  Aligned_cols=86  Identities=29%  Similarity=0.459  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.++.++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|...       ++++++++|++..
T Consensus        43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~~~~~~p~~~~  115 (131)
T 2vyi_A           43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAY-------YKKALELDPDNET  115 (131)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTCHH
T ss_pred             CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHhcCccchH
Confidence            456788999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAE   95 (125)
Q Consensus        83 ~~~~l~~~~~~~~   95 (125)
                      ++..++.+...++
T Consensus       116 ~~~~l~~~~~~~~  128 (131)
T 2vyi_A          116 YKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888876554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.41  E-value=1.9e-12  Score=81.01  Aligned_cols=86  Identities=28%  Similarity=0.479  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|....+++++|.++...|++++|+..+++++..+|.++.+++++|.++..+|++++|+..       |+++++++|++.
T Consensus        46 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~p~~~  118 (133)
T 2lni_A           46 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV-------YQKALDLDSSCK  118 (133)
T ss_dssp             CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCGGGT
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHhCCCch
Confidence            3556789999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLA   94 (125)
Q Consensus        82 ~~~~~l~~~~~~~   94 (125)
                      .++..++.++...
T Consensus       119 ~~~~~l~~~~~~~  131 (133)
T 2lni_A          119 EAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9998888877543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.40  E-value=1.6e-11  Score=75.45  Aligned_cols=90  Identities=29%  Similarity=0.344  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      +.+++++|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..       ++++++.+|++..++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~~   81 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPNNAEAWY   81 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHhCCccHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKLEKMK  102 (125)
Q Consensus        86 ~l~~~~~~~~~~~~~~~  102 (125)
                      .++.++...++...+..
T Consensus        82 ~la~~~~~~~~~~~A~~   98 (125)
T 1na0_A           82 NLGNAYYKQGDYDEAIE   98 (125)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHH
Confidence            99999887776665554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=3.5e-12  Score=95.90  Aligned_cols=95  Identities=16%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-HHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      ++|....+|.++|.++...|++++|+..|++++.++|++..+|+++|.++..+|+ +++|+..       |+++++++|+
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~-------~~~al~l~P~  164 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNY-------ITAIIEEQPK  164 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHCTT
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHH-------HHHHHHHCCC
Confidence            3577889999999999999999999999999999999999999999999999997 9999999       9999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..++..++.++..+++..++..
T Consensus       165 ~~~a~~~~g~~~~~~g~~~eAl~  187 (382)
T 2h6f_A          165 NYQVWHHRRVLVEWLRDPSQELE  187 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHH
Confidence            99999999999988876655543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.39  E-value=1.3e-11  Score=79.99  Aligned_cols=80  Identities=24%  Similarity=0.451  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+.++.++|.++...|++++|+..+++++.++|.++.+++++|.++..+|++++|+..       |+++++++|++..+
T Consensus        45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~a~~~~p~~~~~  117 (166)
T 1a17_A           45 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD-------YETVVKVKPHDKDA  117 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTCHHH
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCCCHHH
Confidence            34455666666666666666666666666666666666666666666666666666666       66666666665555


Q ss_pred             HHHHHHH
Q 033182           84 KRTILRL   90 (125)
Q Consensus        84 ~~~l~~~   90 (125)
                      +..+..+
T Consensus       118 ~~~~~~~  124 (166)
T 1a17_A          118 KMKYQEC  124 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5443333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=9.6e-12  Score=79.21  Aligned_cols=78  Identities=29%  Similarity=0.559  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      ..+|.++|.++...|++++|+..+++++.++|+++.+++++|.++..+|++++|...       |+++++++|++..+..
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~  137 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLD-------LQRCVSLEPKNKVFQE  137 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCCcHHHHH
Confidence            455555566665556666666666666655555555556666666666666666555       5555555555555555


Q ss_pred             HHHHH
Q 033182           86 TILRL   90 (125)
Q Consensus        86 ~l~~~   90 (125)
                      .+..+
T Consensus       138 ~l~~~  142 (148)
T 2dba_A          138 ALRNI  142 (148)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.38  E-value=7.1e-12  Score=83.33  Aligned_cols=93  Identities=16%  Similarity=0.153  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.++.++|.++...++++.|...+.+++.++|.+..++..+|.++..+|++++|+..       |+++++++|++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~~l~~~p~~~~  142 (184)
T 3vtx_A           70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEA-------YEKTISIKPGFIR  142 (184)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHH-------HHHHHHhcchhhh
Confidence            334556667777777777777777777777777777888888888888888888888888       8888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus       143 ~~~~lg~~~~~~g~~~~A~~  162 (184)
T 3vtx_A          143 AYQSIGLAYEGKGLRDEAVK  162 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHH
Confidence            88888888877776665554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.38  E-value=4.4e-12  Score=87.13  Aligned_cols=92  Identities=10%  Similarity=0.018  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      .++..++++|.+++..|+|++|+..|++++.++| .+..+++++|.++..+|++++|+..       |+++++++|++..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~al~~~p~~~~   77 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADY-------FDIAIKKNYNLAN   77 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTCSHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHH-------HHHHHHhCcchHH
Confidence            4568999999999999999999999999999999 9999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus        78 ~~~~l~~~~~~~~~~~~A~~   97 (228)
T 4i17_A           78 AYIGKSAAYRDMKNNQEYIA   97 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHH
Confidence            99999999988887766655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.37  E-value=1e-11  Score=75.02  Aligned_cols=69  Identities=16%  Similarity=0.268  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTYMK-ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+++|.++...|++++|+..+++++..+|+++. +++++|.++..+|++++|+..       |+++++++|++..++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN-------YQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCcHHHH
Confidence            367899999999999999999999999999999 999999999999999999999       999999999999887

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.9e-11  Score=77.80  Aligned_cols=93  Identities=20%  Similarity=0.153  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      +.....++.+|.++...|+|++|+..|++++..+|++   ..+++++|.++..+|++++|+..       ++++++++|+
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~   97 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETE-------ASKAIEKDGG   97 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHTSC
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHH-------HHHHHhhCcc
Confidence            4567889999999999999999999999999999998   99999999999999999999999       9999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..++..++.++...++..++..
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~  120 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVL  120 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999988887766654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.36  E-value=4.7e-11  Score=80.72  Aligned_cols=93  Identities=18%  Similarity=0.126  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----------------HHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM----------------KALIRRAEAHEKLEHFEEAIAGIQDL   66 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~~   66 (125)
                      +..+..+.++|.+++..|+|++|+..|++++.+.|.++                .+++++|.++..+|+|++|+..    
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~----  110 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH----  110 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH----
Confidence            34567899999999999999999999999999999887                8999999999999999999999    


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           67 MIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                         ++++++++|++..++..++.++...++...+..
T Consensus       111 ---~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~  143 (198)
T 2fbn_A          111 ---ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE  143 (198)
T ss_dssp             ---HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ---HHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence               999999999999999999999988887766654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.36  E-value=1.9e-11  Score=79.23  Aligned_cols=92  Identities=17%  Similarity=0.152  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+..+.++|.++...|++++|+..+++++..+|.++.+++++|.++..+|++++|+..       ++++++++|++..+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~~   83 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD-------ATRAIELDKKYIKG   83 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcccHHH
Confidence            45778999999999999999999999999999999999999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..++.++...++..++..
T Consensus        84 ~~~~a~~~~~~~~~~~A~~  102 (166)
T 1a17_A           84 YYRRAASNMALGKFRAALR  102 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHH
Confidence            9999999988877766554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.35  E-value=1.3e-12  Score=96.34  Aligned_cols=84  Identities=26%  Similarity=0.503  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      .+|+|+|.||.++|+|++|+..|++++.++|++.++++++|.++..+|++++|+..       |+++++++|++..++..
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~-------l~~al~l~p~~~~a~~~  303 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDD-------FRKAQKYAPDDKAIRRE  303 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH-------HHHTTC-----------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCCHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999       99999999999999999


Q ss_pred             HHHHHHHHHHH
Q 033182           87 ILRLQPLAEEK   97 (125)
Q Consensus        87 l~~~~~~~~~~   97 (125)
                      +..+.......
T Consensus       304 L~~l~~~~~~~  314 (338)
T 2if4_A          304 LRALAEQEKAL  314 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHH
Confidence            99886555433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.35  E-value=6.9e-12  Score=90.00  Aligned_cols=92  Identities=21%  Similarity=0.146  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+..+.++|..++..|+|++|+..|++++.++|+++.+++++|.++..+|++++|+..       ++++++++|++..+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~   74 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD-------CRRALELDGQSVKA   74 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHTTSCTTCHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCCHHH
Confidence            35678899999999999999999999999999999999999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..++.++...++..++..
T Consensus        75 ~~~lg~~~~~~g~~~~A~~   93 (281)
T 2c2l_A           75 HFFLGQCQLEMESYDEAIA   93 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHH
Confidence            9999988888776665554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.35  E-value=1.8e-11  Score=76.73  Aligned_cols=80  Identities=15%  Similarity=0.121  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +.+++++|.++...|+|++|+..+++++..+|++   +.+++.+|.++..+|++++|+..       |+++++..|++..
T Consensus        39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~~~~~~p~~~~  111 (129)
T 2xev_A           39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQT-------LQQVATQYPGSDA  111 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTSHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCChH
Confidence            3789999999999999999999999999999999   89999999999999999999999       9999999999988


Q ss_pred             HHHHHHHHHH
Q 033182           83 AKRTILRLQP   92 (125)
Q Consensus        83 ~~~~l~~~~~   92 (125)
                      +......+..
T Consensus       112 ~~~a~~~l~~  121 (129)
T 2xev_A          112 ARVAQERLQS  121 (129)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8777666554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.34  E-value=1.6e-11  Score=93.80  Aligned_cols=93  Identities=18%  Similarity=0.186  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---------------MKALIRRAEAHEKLEHFEEAIAGIQDLM   67 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~   67 (125)
                      +..+..|.++|.++++.|+|++|+..|++++.++|.+               ..+|+++|.|+..+|+|++|+.+     
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~-----  339 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC-----  339 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-----
Confidence            5677899999999999999999999999999999998               69999999999999999999999     


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           68 IVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        68 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                        |+++++++|++..++..++.++..+++..++..
T Consensus       340 --~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~  372 (457)
T 1kt0_A          340 --CDKALGLDSANEKGLYRRGEAQLLMNEFESAKG  372 (457)
T ss_dssp             --HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --HHHHHhcCCccHHHHHHHHHHHHHccCHHHHHH
Confidence              999999999999999999999988887766654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.9e-11  Score=84.00  Aligned_cols=94  Identities=22%  Similarity=0.226  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.++.++|.++...|++++|+..+++++..+|.++.+++++|.++..+|++++|+..       ++++++.+|++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~~~~~  207 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD-------CNKAIEKDPNFV  207 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHhCHHHH
Confidence            4677889999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus       208 ~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          208 RAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHH
Confidence            999999999988887765554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.34  E-value=1.5e-11  Score=85.59  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.+++++|.++...|++++|+..|++++.++|.++.+++.+|.++...|++++|+..       |+++++++|++..
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~al~~~~~~~~  112 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA-------FDSVLELDPTYNY  112 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCTH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH-------HHHHHhcCccccH
Confidence            567888999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus       113 ~~~~la~~~~~~g~~~~A~~  132 (275)
T 1xnf_A          113 AHLNRGIALYYGGRDKLAQD  132 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHH
Confidence            99999988887776665554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=1.4e-11  Score=83.45  Aligned_cols=91  Identities=20%  Similarity=0.150  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH---
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN---   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~---   81 (125)
                      .+.+|+++|.++...|++++|+..|++++.++|+++.+++++|.++..+|++++|+..       |++++++.|++.   
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~~~~~~~~  108 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD-------LKEALIQLRGNQLID  108 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTTTCSEEE
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH-------HHHHHHhCCCccHHH
Confidence            4678999999999999999999999999999999999999999999999999999999       999999888876   


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 -------------QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 -------------~~~~~l~~~~~~~~~~~~~~~  102 (125)
                                   .++..++.++...++...+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  142 (213)
T 1hh8_A          109 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  142 (213)
T ss_dssp             CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence                         899999999988887766554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.33  E-value=2.4e-11  Score=74.67  Aligned_cols=84  Identities=31%  Similarity=0.409  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |....++.++|.++...|++++|+..+++++..+|.++..++.+|.++...|++++|...       ++++++.+|++..
T Consensus        40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~  112 (125)
T 1na0_A           40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPNNAE  112 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCcHH
Confidence            445778999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHH
Q 033182           83 AKRTILRLQPL   93 (125)
Q Consensus        83 ~~~~l~~~~~~   93 (125)
                      +...++.+...
T Consensus       113 ~~~~l~~~~~~  123 (125)
T 1na0_A          113 AKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99888877643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.32  E-value=1.4e-11  Score=76.45  Aligned_cols=92  Identities=20%  Similarity=0.178  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc---
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN---   80 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~---   80 (125)
                      ..+..++++|.++...|++++|+..+++++..+|.++.+++++|.++...|++++|+..       +++++++.|.+   
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~   74 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL-------CEKAIEVGRENRED   74 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHHHSTTC
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHH-------HHHHHhhccccchh
Confidence            45778999999999999999999999999999999999999999999999999999999       99999988876   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 ----NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ----~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                          ..++..++.++...++...+..
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~  100 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIH  100 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHH
Confidence                8888899998888777665554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.32  E-value=1.2e-11  Score=82.03  Aligned_cols=93  Identities=14%  Similarity=0.084  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH-HHHchhH--HHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA-HEKLEHF--EEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      |..+.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.+ +...|++  ++|+..       ++++++.+|+
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~-------~~~al~~~p~  113 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM-------IDKALALDSN  113 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH-------HHHHHHHCTT
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH-------HHHHHHhCCC
Confidence            55678999999999999999999999999999999999999999999 8899999  999999       9999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..++..++.++...++..++..
T Consensus       114 ~~~~~~~la~~~~~~g~~~~A~~  136 (177)
T 2e2e_A          114 EITALMLLASDAFMQANYAQAIE  136 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcccHHHHHH
Confidence            99999999999888877766554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.32  E-value=1.6e-11  Score=76.25  Aligned_cols=87  Identities=18%  Similarity=0.256  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE   75 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~   75 (125)
                      |..+.+++++|.++...|++++|+..+++++.++|.+       +.+++++|.++..+|++++|...       |+++++
T Consensus        35 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~  107 (131)
T 1elr_A           35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF-------YNKSLA  107 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHH
T ss_pred             CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH-------HHHHHH
Confidence            5567889999999999999999999999999999887       99999999999999999999999       999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHHHH
Q 033182           76 FDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        76 l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      ++| ++.+...+..+...+++.
T Consensus       108 ~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A          108 EHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hCC-CHHHHHHHHHHHHHHHHh
Confidence            999 588888888887766543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.29  E-value=2.8e-11  Score=92.67  Aligned_cols=94  Identities=16%  Similarity=0.221  Sum_probs=87.9

Q ss_pred             hhHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKL--------GKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM   70 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~l~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~   70 (125)
                      +|..+.+|+++|.++...        |++++|+..|++++.++|   .++.+|+++|.++..+|++++|+..       |
T Consensus       209 ~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~  281 (474)
T 4abn_A          209 DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG-------F  281 (474)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHH-------H
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHH-------H
Confidence            466788999999999999        999999999999999999   9999999999999999999999999       9


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           71 KKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        71 ~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +++++++|++..++..++.+...+++..++..
T Consensus       282 ~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          282 SQAAALDPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998887766553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.29  E-value=5.5e-11  Score=92.22  Aligned_cols=94  Identities=12%  Similarity=0.018  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|....+|+++|.++...|++++|+..+++++.++|++..+++++|.++..+|++++|+..       |+++++++|++.
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~   91 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL-------LQQASDAAPEHP   91 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCH
Confidence            3556778888888888888888888888888888888888888888888888888888888       888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus        92 ~~~~~la~~~~~~g~~~~A~~  112 (568)
T 2vsy_A           92 GIALWLGHALEDAGQAEAAAA  112 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHH
Confidence            888888888877776655544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=9.2e-11  Score=89.81  Aligned_cols=93  Identities=11%  Similarity=0.046  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc---------hhHHHHHHhHHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL---------EHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~   72 (125)
                      +|..+.+|+++|.+|...|++++|+..|++++.++|+ ..++.++|.++..+         |++++|+..       |++
T Consensus       133 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~-------~~~  204 (474)
T 4abn_A          133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ-------AKL  204 (474)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH-------HHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHH-------HHH
Confidence            4667889999999999999999999999999999999 79999999999999         999999999       999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHH--------HHHHHHHH
Q 033182           73 ILEFDPSNNQAKRTILRLQPLA--------EEKLEKMK  102 (125)
Q Consensus        73 a~~l~p~~~~~~~~l~~~~~~~--------~~~~~~~~  102 (125)
                      +++++|++..++..++.++...        ++..++..
T Consensus       205 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            9999999999999999999887        76665554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.28  E-value=1.2e-10  Score=81.64  Aligned_cols=94  Identities=13%  Similarity=0.091  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ++..+..++++|..+++.|+|++|+..|++++..+|.+   +.+++.+|.++..+|+|++|+..       |++++++.|
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~~l~~~p   83 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASE-------YERFIQIYQ   83 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCT
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHH-------HHHHHHHCC
Confidence            35567889999999999999999999999999999998   99999999999999999999999       999999988


Q ss_pred             Cc---HHHHHHHHHHHHH--------HHHHHHHHH
Q 033182           79 SN---NQAKRTILRLQPL--------AEEKLEKMK  102 (125)
Q Consensus        79 ~~---~~~~~~l~~~~~~--------~~~~~~~~~  102 (125)
                      ++   ..++..++.++..        .++..++..
T Consensus        84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~  118 (261)
T 3qky_A           84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIE  118 (261)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence            54   6678888888877        666665554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.27  E-value=1.4e-11  Score=94.77  Aligned_cols=83  Identities=23%  Similarity=0.434  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.++.++|++++|+..++++++++|+++.+++++|.++..+|++++|+..       |+++++++|++.
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~-------~~~al~~~p~~~  108 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD-------YETVVKVKPHDK  108 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHSTTCT
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCH
Confidence            3566788999999999999999999999999999999999999999999999999999999       999999999988


Q ss_pred             HHHHHHHHHH
Q 033182           82 QAKRTILRLQ   91 (125)
Q Consensus        82 ~~~~~l~~~~   91 (125)
                      .++..++.+.
T Consensus       109 ~~~~~l~~~~  118 (477)
T 1wao_1          109 DAKMKYQECN  118 (477)
T ss_dssp             THHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888773

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.26  E-value=2e-10  Score=74.95  Aligned_cols=87  Identities=14%  Similarity=0.112  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|...       ++++++.+|++..++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~  113 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL-------LIKVAEANPINFNVR  113 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHhcCcHhHHHH
Confidence            3445555555555555555555555555555555555555555555555555555555       555555555555555


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKL   98 (125)
Q Consensus        85 ~~l~~~~~~~~~~~   98 (125)
                      ..++.++...++..
T Consensus       114 ~~~a~~~~~~~~~~  127 (186)
T 3as5_A          114 FRLGVALDNLGRFD  127 (186)
T ss_dssp             HHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCcHH
Confidence            55555554444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.26  E-value=1.5e-10  Score=83.71  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+.++.++|.++...|++++|+..+++++.++|+++.+++++|.++...|++++|+..       |+++++++|++..++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~~~~~~~~  288 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA-------YRRALELQPGYIRSR  288 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcHHHH
Confidence            5788999999999999999999999999999999999999999999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++.++...++..++..
T Consensus       289 ~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          289 YNLGISCINLGAHREAVE  306 (368)
T ss_dssp             HHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHH
Confidence            999999988887766655

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.26  E-value=3.5e-11  Score=87.56  Aligned_cols=91  Identities=18%  Similarity=0.177  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+.++.++|.++...|++++|+..+++++.++|+++.++.++|.++..+|++++|+..       |+++++++|++..++
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~~  284 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA-------YTRALEIQPGFIRSR  284 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCchHHH
Confidence            6788999999999999999999999999999999999999999999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++.++...++..++..
T Consensus       285 ~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          285 YNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHH
Confidence            999999988886665544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.26  E-value=5.6e-11  Score=87.24  Aligned_cols=90  Identities=18%  Similarity=0.256  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.++.++|.++...|++++|+..+++++.++|+++.++.++|.++...|++++|+..       |+++++++|++..
T Consensus       234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~~  306 (388)
T 1w3b_A          234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC-------YNTALRLCPTHAD  306 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCcccHH
Confidence            334555666666666666666666666666666666666666666666666666666666       6666666666666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLE   99 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~   99 (125)
                      ++..++.++...++..+
T Consensus       307 ~~~~l~~~~~~~g~~~~  323 (388)
T 1w3b_A          307 SLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHH
Confidence            66666655555444433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.26  E-value=1.2e-11  Score=98.56  Aligned_cols=89  Identities=15%  Similarity=0.067  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |....+++++|.++.++|++++|+..|+++++++|++..+|+++|.++..+|++++|+..       |+++++++|++..
T Consensus       430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~l~P~~~~  502 (681)
T 2pzi_A          430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKH-------FTEVLDTFPGELA  502 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHSTTCSH
T ss_pred             ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCChH
Confidence            445567777777777777777777777777777777777777777777777777777777       7777777777777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKL   98 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~   98 (125)
                      ++..++.++...++..
T Consensus       503 ~~~~lg~~~~~~g~~~  518 (681)
T 2pzi_A          503 PKLALAATAELAGNTD  518 (681)
T ss_dssp             HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHcCChH
Confidence            7777777666655443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.26  E-value=4.1e-11  Score=87.99  Aligned_cols=92  Identities=22%  Similarity=0.283  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.+|.++|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|+..       |+++++.+|++..
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~~  136 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA-------YVSALQYNPDLYC  136 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH-------HHHHHHHCTTCTH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcHH
Confidence            445667777777777777777777777777777777777777777777777777777777       7777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~  101 (125)
                      ++..++.+....++..++.
T Consensus       137 ~~~~l~~~~~~~g~~~~A~  155 (388)
T 1w3b_A          137 VRSDLGNLLKALGRLEEAK  155 (388)
T ss_dssp             HHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHH
Confidence            7766666666555444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.24  E-value=2e-10  Score=77.33  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|...       ++++++.+|++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~~~~~   76 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES-------FRQALSIKPDSA   76 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHH-------HHHHHHhCCCCh
Confidence            3567788888888888888888888888888888888888888888888888888888888       888888888888


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHH
Q 033182           82 QAKRTILRLQPLA-EEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~-~~~~~~~~  102 (125)
                      .++..++.++... ++..++..
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~   98 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMA   98 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHH
Confidence            8888888887777 65554444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.24  E-value=9.9e-12  Score=99.14  Aligned_cols=93  Identities=14%  Similarity=0.127  Sum_probs=86.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|....+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++ +..       |+++++++|++.
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~-------~~~al~~~P~~~  534 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKF-------YQTVWSTNDGVI  534 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCH-------HHHHHHHCTTCH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHH-------HHHHHHhCCchH
Confidence            466788999999999999999999999999999999999999999999999999999 999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHH
Confidence            999999999988887766554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.24  E-value=1.3e-10  Score=75.83  Aligned_cols=93  Identities=20%  Similarity=0.280  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |....++.++|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|...       ++++++.+|++..
T Consensus        73 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~  145 (186)
T 3as5_A           73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS-------FKIALGLRPNEGK  145 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH-------HHHHHhcCccchH
Confidence            456788999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus       146 ~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A          146 VHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            99999999988876665554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.24  E-value=2.3e-10  Score=81.85  Aligned_cols=85  Identities=27%  Similarity=0.362  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      ..++.++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|...       |+++++++|++..+..
T Consensus       272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~-------~~~a~~~~p~~~~~~~  344 (359)
T 3ieg_A          272 VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD-------YEAAQEHNENDQQIRE  344 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCChHHHH
Confidence            356788999999999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEK   97 (125)
Q Consensus        86 ~l~~~~~~~~~~   97 (125)
                      .+..+...+++.
T Consensus       345 ~l~~~~~~~~~~  356 (359)
T 3ieg_A          345 GLEKAQRLLKQS  356 (359)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999988777654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.24  E-value=2.8e-10  Score=77.74  Aligned_cols=91  Identities=18%  Similarity=0.070  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.++..+|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|...       ++++++.+|.+..
T Consensus        54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~  126 (243)
T 2q7f_A           54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDM-------FEKALRAGMENGD  126 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHTCCSHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCCCHH
Confidence            344566666666666666666666666666666666666666666666666666666666       6666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~  100 (125)
                      ++..++.++...++..++
T Consensus       127 ~~~~~a~~~~~~~~~~~A  144 (243)
T 2q7f_A          127 LFYMLGTVLVKLEQPKLA  144 (243)
T ss_dssp             HHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHhccHHHH
Confidence            666666666555544443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.23  E-value=3.8e-10  Score=69.72  Aligned_cols=87  Identities=29%  Similarity=0.317  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      .+|+++|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|...       ++++++.+|++..++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~~~   74 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPRSAEAWYN   74 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHH-------HHHHHHHCCCchHHHHH
Confidence            35667777777777777777777777777777777777777777777777777777       77777777777777666


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           87 ILRLQPLAEEKLEK  100 (125)
Q Consensus        87 l~~~~~~~~~~~~~  100 (125)
                      ++.+....++...+
T Consensus        75 l~~~~~~~~~~~~A   88 (136)
T 2fo7_A           75 LGNAYYKQGDYDEA   88 (136)
T ss_dssp             HHHHHHTTTCHHHH
T ss_pred             HHHHHHHhcCHHHH
Confidence            66666555544443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.23  E-value=1.5e-10  Score=71.59  Aligned_cols=92  Identities=27%  Similarity=0.303  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |....++.++|.++...|++++|+..+++++..+|.++..++.+|.++...|++++|...       ++++++..|.+..
T Consensus        32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~  104 (136)
T 2fo7_A           32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPRSAE  104 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCChH
Confidence            445678999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~  101 (125)
                      ++..++.++...++...+.
T Consensus       105 ~~~~la~~~~~~~~~~~A~  123 (136)
T 2fo7_A          105 AWYNLGNAYYKQGDYDEAI  123 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHH
Confidence            9999988887666555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.23  E-value=1e-10  Score=90.76  Aligned_cols=94  Identities=12%  Similarity=-0.007  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.++.++|.++..+|++++|+..+++++.++|+++.+++++|.++..+|++++|+..       |+++++++|++.
T Consensus        53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~~~  125 (568)
T 2vsy_A           53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA-------YTRAHQLLPEEP  125 (568)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCH
Confidence            4667889999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHH---HHHHHHHH
Q 033182           82 QAKRTILRLQPLA---EEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~---~~~~~~~~  102 (125)
                      .++..++.++...   ++..++..
T Consensus       126 ~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A          126 YITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHH
Confidence            9999999999888   65554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.21  E-value=5e-10  Score=80.39  Aligned_cols=99  Identities=10%  Similarity=0.073  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH------------------
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD------------------   65 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~------------------   65 (125)
                      .....+..+|..+...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++                  
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999987555                  


Q ss_pred             ---------HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           66 ---------LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        66 ---------~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                               +...++++++.+|++..++..++.++...++..++..
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~  240 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE  240 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence                     3455788889999999999999999888887766655

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.21  E-value=2.5e-10  Score=81.60  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ++..++.+|.+++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..       ++++++++|++..++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~   74 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVIALKMDFTAAR   74 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCcchHH
Confidence            4677889999999999999999999999999999999999999999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++.++...++..++..
T Consensus        75 ~~l~~~~~~~~~~~~A~~   92 (359)
T 3ieg_A           75 LQRGHLLLKQGKLDEAED   92 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHH
Confidence            999988888876665554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.20  E-value=4.5e-10  Score=76.72  Aligned_cols=93  Identities=13%  Similarity=0.065  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |....++.++|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|...       ++++++.+|++..
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~  160 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPY-------LQRAVELNENDTE  160 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCccHH
Confidence            445677788888888888888888888888888888888888888888888888888888       8888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          161 ARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            88777777776665544433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.20  E-value=1.9e-10  Score=85.87  Aligned_cols=91  Identities=25%  Similarity=0.275  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----------------cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALE----------------LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI   68 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~   68 (125)
                      .+..+.++|..+++.|+|++|+..|++++.                ++|.+..+++++|.++..+|+|++|+..      
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~------  295 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS------  295 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH------
Confidence            456799999999999999999999999999                8889999999999999999999999999      


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           69 VMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        69 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                       ++++++++|++..++..++.++..+++..++..
T Consensus       296 -~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~  328 (370)
T 1ihg_A          296 -CLEALEIDPSNTKALYRRAQGWQGLKEYDQALA  328 (370)
T ss_dssp             -HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHH
Confidence             999999999999999999999988887766655

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.20  E-value=1.4e-10  Score=76.73  Aligned_cols=83  Identities=12%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGIC-FLKLGKF--EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|..+.++.++|.+ +...|++  ++|+..+++++..+|+++.+++.+|.++..+|++++|...       |+++++++|
T Consensus        74 ~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p  146 (177)
T 2e2e_A           74 RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIEL-------WQKVMDLNS  146 (177)
T ss_dssp             HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHH-------HHHHHhhCC
Confidence            35567899999999 8899999  9999999999999999999999999999999999999999       999999999


Q ss_pred             CcHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQ   91 (125)
Q Consensus        79 ~~~~~~~~l~~~~   91 (125)
                      ++......+..+.
T Consensus       147 ~~~~~~~~~~~i~  159 (177)
T 2e2e_A          147 PRINRTQLVESIN  159 (177)
T ss_dssp             TTSCHHHHHHHHH
T ss_pred             CCccHHHHHHHHH
Confidence            9876655555444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.19  E-value=4.7e-10  Score=76.98  Aligned_cols=90  Identities=14%  Similarity=0.183  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHHHHHHchhHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALE--------------------------LNPTYMKALIRRAEAHEKLEHFEEA   59 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--------------------------l~p~~~~~~~~~~~~~~~~~~~~~A   59 (125)
                      +.++.++|.++...|++++|+..+++++.                          .+|.++.+++.+|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            78999999999999999999999999999                          7788899999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           60 IAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        60 ~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..       ++++++.+|++..++..++.++...++..++..
T Consensus       159 ~~~-------~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  194 (258)
T 3uq3_A          159 VKA-------YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA  194 (258)
T ss_dssp             HHH-------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHH-------HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence            999       999999999999999999999988887766655

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.19  E-value=2.1e-11  Score=76.28  Aligned_cols=78  Identities=10%  Similarity=0.053  Sum_probs=69.1

Q ss_pred             HhcCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182           18 KLGKFEESIKECTKALEL---NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA   94 (125)
Q Consensus        18 ~~~~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~   94 (125)
                      .+|++++|+..|++++.+   +|+++.+++++|.++..+|++++|+..       |+++++++|++..++..++.++...
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~~l~~~~~~~   74 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAV-------LANGVKQFPNHQALRVFYAMVLYNL   74 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCchHHHHHHHHHHHHc
Confidence            468999999999999999   699999999999999999999999999       9999999999999999999999998


Q ss_pred             HHHHHHHH
Q 033182           95 EEKLEKMK  102 (125)
Q Consensus        95 ~~~~~~~~  102 (125)
                      ++..++..
T Consensus        75 g~~~~A~~   82 (117)
T 3k9i_A           75 GRYEQGVE   82 (117)
T ss_dssp             TCHHHHHH
T ss_pred             CCHHHHHH
Confidence            88776665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.19  E-value=6.5e-11  Score=85.69  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--   80 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--   80 (125)
                      |..+.++.++|.++...|++++|+..+++++.++|+++.+++++|.++..+|++++|...       |+++++++|++  
T Consensus       248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~~~~~~  320 (368)
T 1fch_A          248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH-------FLEALNMQRKSRG  320 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHHTC--
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCCC
Confidence            556789999999999999999999999999999999999999999999999999999999       99999999988  


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 ---------NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ---------~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                               ..++..++.++..+++...+..
T Consensus       321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence                     8899999999988886655543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.19  E-value=1.2e-10  Score=88.17  Aligned_cols=92  Identities=22%  Similarity=0.191  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+..|..+|..+.+.|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..       |+++++++|++..+
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~   95 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF-------TTKALEIKPDHSKA   95 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCchHHH
Confidence            35688999999999999999999999999999999999999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..++.++...++..++..
T Consensus        96 ~~~la~~~~~~g~~~~A~~  114 (537)
T 3fp2_A           96 LLRRASANESLGNFTDAMF  114 (537)
T ss_dssp             HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHH
Confidence            9999999988887766654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.18  E-value=4.1e-10  Score=77.70  Aligned_cols=90  Identities=19%  Similarity=0.110  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      +.+|+.+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|...       ++++++.+|++..++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~~~~  109 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE-------YRKALASDSRNARVLN  109 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCcHHHHH
Confidence            667777777777777777777777777777777777777777777777777777777       7777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKLEKMK  102 (125)
Q Consensus        86 ~l~~~~~~~~~~~~~~~  102 (125)
                      .++.++...++..++..
T Consensus       110 ~la~~~~~~g~~~~A~~  126 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQ  126 (252)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHH
Confidence            77777766665554443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.18  E-value=1.1e-10  Score=83.69  Aligned_cols=72  Identities=26%  Similarity=0.537  Sum_probs=68.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +|..+.+|+++|.+|..+|++++|+..+++++.++|++..+++++|.++..+|++++|+..       |+++++++|++
T Consensus        34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~l~p~~  105 (281)
T 2c2l_A           34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN-------LQRAYSLAKEQ  105 (281)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHT
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCccc
Confidence            3567889999999999999999999999999999999999999999999999999999999       99999988865

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.18  E-value=5.9e-10  Score=74.58  Aligned_cols=72  Identities=22%  Similarity=0.251  Sum_probs=66.1

Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHH----------HHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182           17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE----------EAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus        17 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      -+.+.|++|+..++++++++|+++.+|+++|.++..+++++          +|+..       |+++++++|++.+++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~-------le~AL~ldP~~~~A~~~   85 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK-------FEEALLIDPKKDEAVWC   85 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-------HHHHHHHCTTCHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHH-------HHHHHHhCcCcHHHHHH
Confidence            46788999999999999999999999999999999998864          77777       99999999999999999


Q ss_pred             HHHHHHHHH
Q 033182           87 ILRLQPLAE   95 (125)
Q Consensus        87 l~~~~~~~~   95 (125)
                      ++.++..++
T Consensus        86 LG~ay~~lg   94 (158)
T 1zu2_A           86 IGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.18  E-value=9e-10  Score=78.02  Aligned_cols=93  Identities=12%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..       ++++++.+|++..
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~  241 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDA-------YNRALDINPGYVR  241 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCCCHH
Confidence            446788999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus       242 ~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          242 VMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHH
Confidence            99999999988877766554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=6.6e-10  Score=77.81  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHhcCCCChHHH-----------------HHHHHHHHHchhHHH
Q 033182            4 LRSICHSNRGICFLK--------LGKFEESIKECTKALELNPTYMKAL-----------------IRRAEAHEKLEHFEE   58 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~l~p~~~~~~-----------------~~~~~~~~~~~~~~~   58 (125)
                      ..+.+++++|.++..        .|++++|+..|++++..+|++..+.                 +.+|.++...|++++
T Consensus        87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  166 (261)
T 3qky_A           87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA  166 (261)
T ss_dssp             THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            456789999999999        9999999999999999999887666                 899999999999999


Q ss_pred             HHHhHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHH
Q 033182           59 AIAGIQDLMIVMKKILEFDPS---NNQAKRTILRLQPLA   94 (125)
Q Consensus        59 A~~~~~~~~~~~~~a~~l~p~---~~~~~~~l~~~~~~~   94 (125)
                      |+..       |+++++..|+   ...++..++.++..+
T Consensus       167 A~~~-------~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          167 AAVT-------YEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHH-------HHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHH-------HHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            9999       9999999998   567888999888776

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.17  E-value=3.2e-10  Score=84.16  Aligned_cols=94  Identities=16%  Similarity=0.159  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+..++.+|.++.+.|++++|+..|++++..+|.++.+++.+|.++..+|++++|+..       |+++++++|++.
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~   94 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVIQLKMDFT   94 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCcH
Confidence            4677888999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus        95 ~~~~~l~~~~~~~g~~~~A~~  115 (450)
T 2y4t_A           95 AARLQRGHLLLKQGKLDEAED  115 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHH
Confidence            999999998888776665544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.17  E-value=3.8e-11  Score=92.32  Aligned_cols=93  Identities=17%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +..+..+.++|.++.+.|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..       ++++++++|++..
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~l~p~~~~   75 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD-------ATRAIELDKKYIK   75 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHSCTTCHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCCHH
Confidence            345667888999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++..+++..++..
T Consensus        76 ~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           76 GYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             HHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            99999999999888776665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.17  E-value=3e-10  Score=82.56  Aligned_cols=90  Identities=18%  Similarity=0.129  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      ...++++|.++.+.|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..       |+++++++|++..++.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~~~  137 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA-------LQRCLELQPNNLKALM  137 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCHHHHH
Confidence            445899999999999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKLEKMK  102 (125)
Q Consensus        86 ~l~~~~~~~~~~~~~~~  102 (125)
                      .++.++...++..++..
T Consensus       138 ~l~~~~~~~g~~~~A~~  154 (365)
T 4eqf_A          138 ALAVSYTNTSHQQDACE  154 (365)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHccccHHHHHH
Confidence            99999988877665554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.17  E-value=8.7e-11  Score=71.05  Aligned_cols=71  Identities=13%  Similarity=0.074  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      |....++.++|.++...|++++|+..+++++..+|.  +..+++++|.++..+ |++++|+..       +++++..+|+
T Consensus        37 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~-------~~~~~~~~p~  109 (112)
T 2kck_A           37 PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIA-------EARAKLEHHH  109 (112)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHH-------HHHHGGGCCC
T ss_pred             cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHhhcccC
Confidence            456778999999999999999999999999999999  999999999999999 999999999       9999999997


Q ss_pred             c
Q 033182           80 N   80 (125)
Q Consensus        80 ~   80 (125)
                      +
T Consensus       110 ~  110 (112)
T 2kck_A          110 H  110 (112)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.16  E-value=4.5e-10  Score=79.70  Aligned_cols=91  Identities=18%  Similarity=0.103  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            3 ELRSICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      |..+.+|+.+|.++...| ++++|+..+++++.++|.++.+++.+|.++...|++++|+..       ++++++..|++.
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~~~~~  159 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA-------YFTAAQLMKGCH  159 (330)
T ss_dssp             TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHTTTCS
T ss_pred             cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhccccH
Confidence            334555666666666666 566666666666666666666666666666666666666666       666666666655


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~  100 (125)
                      .++..++.++...++..++
T Consensus       160 ~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B          160 LPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHH
Confidence            5555555555555444333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.16  E-value=4.6e-10  Score=78.12  Aligned_cols=80  Identities=15%  Similarity=0.073  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      +.+|.++|.++...|++++|+..+++++.++|.++.++..+|.++..+|++++|+..       |+++++++|.+..++.
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~~~~~~~~~  146 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQY-------MEKQIRPTTTDPKVFY  146 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH-------HGGGCCSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHH-------HHHHhhcCCCcHHHHH
Confidence            456788888888888888888888888888888888888888888888888888888       8888888888888887


Q ss_pred             HHH-HHHH
Q 033182           86 TIL-RLQP   92 (125)
Q Consensus        86 ~l~-~~~~   92 (125)
                      .++ .++.
T Consensus       147 ~l~~~~~~  154 (272)
T 3u4t_A          147 ELGQAYYY  154 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            777 5443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.15  E-value=6.2e-10  Score=76.77  Aligned_cols=89  Identities=19%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ....++.++|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|...       ++++++.+|++..+
T Consensus       139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~~~~~~~~~~~~  211 (252)
T 2ho1_A          139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY-------YDLFAQGGGQNARS  211 (252)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTSCCCHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcCcHHH
Confidence            34455556666666666666666666666666666666666666666666666666666       66666666666555


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLE   99 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~   99 (125)
                      +..+..++...++..+
T Consensus       212 ~~~~~~~~~~~g~~~~  227 (252)
T 2ho1_A          212 LLLGIRLAKVFEDRDT  227 (252)
T ss_dssp             HHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHccCHHH
Confidence            5555555554444433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.15  E-value=3.7e-10  Score=80.12  Aligned_cols=94  Identities=10%  Similarity=-0.029  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|.++|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|...       ++++++.+|++.
T Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~~~~~  193 (330)
T 3hym_B          121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF-------FSQALSIAPEDP  193 (330)
T ss_dssp             CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTCTTCH
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHhCCCCh
Confidence            4566788999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHH
Confidence            999999999988877666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.15  E-value=1.1e-09  Score=67.84  Aligned_cols=83  Identities=16%  Similarity=0.086  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELN-------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      .+.-++.+|..+++.++|..|+.+++.++...       +..+..+..+|.++.++|+++.|+..       ++++++++
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~-------~~~al~l~   76 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLL-------TKKLLELD   76 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHH-------HHHHHhcC
Confidence            35567899999999999999999999999863       45688999999999999999999999       99999999


Q ss_pred             CCcHHHHHHHHHHHHHH
Q 033182           78 PSNNQAKRTILRLQPLA   94 (125)
Q Consensus        78 p~~~~~~~~l~~~~~~~   94 (125)
                      |++..+...+..+...+
T Consensus        77 P~~~~~~~n~~~~~~~~   93 (104)
T 2v5f_A           77 PEHQRANGNLKYFEYIM   93 (104)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHhhHHHHHHHH
Confidence            99999988877554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.14  E-value=6.7e-10  Score=77.15  Aligned_cols=81  Identities=20%  Similarity=0.168  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.+|.++|.++...|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..       ++++++++|++..
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~a~~~~~~~~~  146 (275)
T 1xnf_A           74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD-------LLAFYQDDPNDPF  146 (275)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCCChH
Confidence            556789999999999999999999999999999999999999999999999999999999       9999999999987


Q ss_pred             HHHHHHHH
Q 033182           83 AKRTILRL   90 (125)
Q Consensus        83 ~~~~l~~~   90 (125)
                      ....+..+
T Consensus       147 ~~~~~~~~  154 (275)
T 1xnf_A          147 RSLWLYLA  154 (275)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.14  E-value=3.1e-10  Score=75.45  Aligned_cols=85  Identities=16%  Similarity=0.219  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            4 LRSICHSNRGICFLKLG---KFEESIKECTKALELN-P-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ......++.|+++.+.+   ++.+++..++.+++.+ | ++.+++|++|..++++|+|++|.++       ++++++.+|
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y-------~~~lL~ieP  102 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY-------VRGLLQTEP  102 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH-------HHHHHHHCT
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH-------HHHHHhcCC
Confidence            35678899999999988   6779999999999999 7 6799999999999999999999999       999999999


Q ss_pred             CcHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAE   95 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~   95 (125)
                      +|..+......+.+.+.
T Consensus       103 ~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A          103 QNNQAKELERLIDKAMK  119 (152)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999888777765553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.14  E-value=1.2e-09  Score=73.42  Aligned_cols=87  Identities=13%  Similarity=-0.025  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHh--hCCCcH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILE--FDPSNN   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~--l~p~~~   81 (125)
                      .+.++..+|.++...|++++|+..+++++..+|.+..+++.+|.++... |++++|+..       ++++++  .+|.+.
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~  113 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY-------FDKALADPTYPTPY  113 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH-------HHHHHTSTTCSCHH
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH-------HHHHHcCcCCcchH
Confidence            3445555555555555555555555555555555555555555555555 555555555       555555  344444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKL   98 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~   98 (125)
                      .++..++.++...++..
T Consensus       114 ~~~~~l~~~~~~~~~~~  130 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFG  130 (225)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHcCCHH
Confidence            55555555544444333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.13  E-value=3.9e-10  Score=79.93  Aligned_cols=93  Identities=11%  Similarity=0.135  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC---
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS---   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~---   79 (125)
                      |..+.++.++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|...       ++++++++|+   
T Consensus       203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~a~~~~~~~~~  275 (327)
T 3cv0_A          203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQ-------LVRAIYMQVGGTT  275 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHTTSCC
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCcccc
Confidence            556788999999999999999999999999999999999999999999999999999999       9999999999   


Q ss_pred             ---------cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           80 ---------NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        80 ---------~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                               +..++..++.++...++...+..
T Consensus       276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  307 (327)
T 3cv0_A          276 PTGEASREATRSMWDFFRMLLNVMNRPDLVEL  307 (327)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence                     78899999999888877665543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.13  E-value=1e-10  Score=86.14  Aligned_cols=93  Identities=16%  Similarity=0.090  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-----------------HHHHHHHHHHHHchhHHHHHHhHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM-----------------KALIRRAEAHEKLEHFEEAIAGIQD   65 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~   65 (125)
                      +..+..+.++|.++++.|+|++|+..|++++.++|.+.                 .+|+++|.++..+|+|++|+..   
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~---  252 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH---  252 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH---
Confidence            34677899999999999999999999999999999887                 4999999999999999999999   


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           66 LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        66 ~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                          |+++++++|++..++..++.++..+++..++..
T Consensus       253 ----~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~  285 (338)
T 2if4_A          253 ----CNIVLTEEEKNPKALFRRGKAKAELGQMDSARD  285 (338)
T ss_dssp             ----HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                999999999999999999999988887766654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.13  E-value=5.2e-10  Score=68.41  Aligned_cols=74  Identities=23%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLGK---FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|.++.++..+|.+++..++   .++|...+++++.+||+++++++.+|..+...|+|++|+..       |+++++.+|
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~-------w~~~l~~~p   74 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDT-------WVLLLDSND   74 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTCCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCC
Confidence            35678899999999987666   79999999999999999999999999999999999999999       999999999


Q ss_pred             CcHH
Q 033182           79 SNNQ   82 (125)
Q Consensus        79 ~~~~   82 (125)
                      ..+.
T Consensus        75 ~~~~   78 (93)
T 3bee_A           75 PNLD   78 (93)
T ss_dssp             TTCC
T ss_pred             CCcc
Confidence            8433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.12  E-value=7.8e-10  Score=82.99  Aligned_cols=92  Identities=15%  Similarity=0.148  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ...+..+..+|.++++.|+|++|+..|++++..+| ++.+++.+|.++..+|++++|+..       ++++++++|++..
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~~~~   74 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEM-------STKALELKPDYSK   74 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCSCCHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHH-------HHHHhccChHHHH
Confidence            34678899999999999999999999999999999 699999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus        75 ~~~~l~~~~~~~g~~~~A~~   94 (514)
T 2gw1_A           75 VLLRRASANEGLGKFADAMF   94 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHH
Confidence            99999999988887766554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.12  E-value=1.2e-10  Score=77.59  Aligned_cols=100  Identities=10%  Similarity=0.036  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH-----------------
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD-----------------   65 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~-----------------   65 (125)
                      +.....+..+|..+...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..+++                 
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~   82 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL   82 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence            344456778888888888888888888888888888888888888888888888888876211                 


Q ss_pred             ----------HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           66 ----------LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        66 ----------~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                                +...++++++++|++..++..++.++...++..++..
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  129 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE  129 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence                      1333555566666666666666666666555544443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.11  E-value=6.7e-10  Score=75.00  Aligned_cols=91  Identities=13%  Similarity=0.053  Sum_probs=82.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .......++++|.++...|+|++|+..|++++  +| ++.+++++|.++..+|++++|+..       |+++++++|++.
T Consensus         2 s~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~~~~~   71 (213)
T 1hh8_A            2 SLVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKA-------FTRSINRDKHLA   71 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCccch
Confidence            34567789999999999999999999999995  44 789999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus        72 ~~~~~lg~~~~~~~~~~~A~~   92 (213)
T 1hh8_A           72 VAYFQRGMLYYQTEKYDLAIK   92 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHH
Confidence            999999999988887766655

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.11  E-value=1.5e-09  Score=80.59  Aligned_cols=84  Identities=27%  Similarity=0.371  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      ..++.++|.++.+.|++++|+..+++++.++|+++.+++.+|.++...|++++|+..       |+++++++|++..++.
T Consensus       295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~  367 (450)
T 2y4t_A          295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD-------YETAQEHNENDQQIRE  367 (450)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTSSSCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCcchHHHHH
Confidence            458999999999999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             HHHHHHHHHHH
Q 033182           86 TILRLQPLAEE   96 (125)
Q Consensus        86 ~l~~~~~~~~~   96 (125)
                      .++.+....+.
T Consensus       368 ~l~~~~~~~~~  378 (450)
T 2y4t_A          368 GLEKAQRLLKQ  378 (450)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99977665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.10  E-value=2e-09  Score=74.28  Aligned_cols=82  Identities=11%  Similarity=-0.004  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .+..++++|..+++.|+|++|+..|++++...|.+   ..+++.+|.++..+|+|++|+..       |+++++.+|++.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~~l~~~P~~~   75 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAA-------IDRFIRLNPTHP   75 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHCcCCC
Confidence            35679999999999999999999999999999876   47999999999999999999999       999999999986


Q ss_pred             H---HHHHHHHHHHH
Q 033182           82 Q---AKRTILRLQPL   93 (125)
Q Consensus        82 ~---~~~~l~~~~~~   93 (125)
                      .   ++..++.++..
T Consensus        76 ~~~~a~~~~g~~~~~   90 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMA   90 (225)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHh
Confidence            5   67777776654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.10  E-value=9.6e-10  Score=73.09  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHH----------------------------------HHHHHHhcCCCChHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIK----------------------------------ECTKALELNPTYMKALIRRA   47 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~----------------------------------~~~~al~l~p~~~~~~~~~~   47 (125)
                      +|..+.+++++|.++...|++++|+.                                  .+++++.++|+++.+++++|
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la  115 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA  115 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35566677777777777776665544                                  44555667899999999999


Q ss_pred             HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHHHHH
Q 033182           48 EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--NQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        48 ~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~~~~~  100 (125)
                      .++...|++++|+..       |+++++.+|++  ..++..++.+....++..+.
T Consensus       116 ~~~~~~g~~~~A~~~-------~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A          116 VQYNQVGRDEEALEL-------LWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHHTTCHHHHHHH-------HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHcccHHHHHHH-------HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            999999999999999       99999999986  55899999888877655433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.09  E-value=5.9e-10  Score=80.38  Aligned_cols=75  Identities=15%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHH-HHhHHHHHHHHHHHHhhCCCcH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA-IAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      |..+.+|+++|.++.++|++++|+..+++++.++|+++.+++++|.++..+|+++++ ...       ++++++++|+++
T Consensus       197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~-------~~~~~~~~P~~~  269 (291)
T 3mkr_A          197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY-------LSQLKDAHRSHP  269 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH-------HHHHHHhCCCCh
Confidence            345566777777777777777777777777777777777777777777777777553 456       667777777766


Q ss_pred             HHH
Q 033182           82 QAK   84 (125)
Q Consensus        82 ~~~   84 (125)
                      .+.
T Consensus       270 ~~~  272 (291)
T 3mkr_A          270 FIK  272 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.09  E-value=2.7e-10  Score=79.30  Aligned_cols=92  Identities=11%  Similarity=0.038  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      |..+.++.++|.++...|++++|+..+++++. .|.+    ..+++.+|.++..+|++++|+..       |+++++++|
T Consensus        34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~a~~~~~  105 (272)
T 3u4t_A           34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQ-------YQAAVDRDT  105 (272)
T ss_dssp             CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHST
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHH-------HHHHHhcCc
Confidence            44556778888888888888888888888887 3333    44578888888888888888888       888888888


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++..++.++...++..++..
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~~A~~  129 (272)
T 3u4t_A          106 TRLDMYGQIGSYFYNKGNFPLAIQ  129 (272)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHH
Confidence            888888888888877776655543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.06  E-value=8.6e-10  Score=83.46  Aligned_cols=93  Identities=17%  Similarity=0.106  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.++.++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..       ++++++.+|++..
T Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~~~~~~~~~~~  379 (537)
T 3fp2_A          307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF-------FNETKLKFPTLPE  379 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCTH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCChH
Confidence            556788999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus       380 ~~~~l~~~~~~~g~~~~A~~  399 (537)
T 3fp2_A          380 VPTFFAEILTDRGDFDTAIK  399 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHH
Confidence            99999998887776665554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.04  E-value=1e-09  Score=78.74  Aligned_cols=90  Identities=13%  Similarity=0.065  Sum_probs=76.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHH----------------------------------HHHHHHHhcCCCChHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESI----------------------------------KECTKALELNPTYMKALIRRA   47 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~----------------------------------~~~~~al~l~p~~~~~~~~~~   47 (125)
                      +|..+.+++++|.++...|++++|+                                  ..+++++..+|+++.+++++|
T Consensus       147 ~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la  226 (287)
T 3qou_A          147 SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA  226 (287)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence            4556777888888888888777765                                  445556778999999999999


Q ss_pred             HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHHH
Q 033182           48 EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--NQAKRTILRLQPLAEEKL   98 (125)
Q Consensus        48 ~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~~~   98 (125)
                      .++...|++++|+..       |+++++.+|++  ..++..+..+...+++..
T Consensus       227 ~~l~~~g~~~~A~~~-------l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          227 LQLHQVGRNEEALEL-------LFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHTTCHHHHHHH-------HHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHcccHHHHHHH-------HHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            999999999999999       99999999998  889999999988877543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.04  E-value=8.1e-09  Score=71.16  Aligned_cols=74  Identities=12%  Similarity=0.134  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHH------------------chhHHHHHHhH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK---ALIRRAEAHEK------------------LEHFEEAIAGI   63 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~~~~~~~~~~------------------~~~~~~A~~~~   63 (125)
                      ...+++++|.++.+.|+|++|+..|++++..+|++..   +++.+|.++..                  +|++++|+.. 
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-  118 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD-  118 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH-
Confidence            3578999999999999999999999999999998864   89999999986                  6899999999 


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHH
Q 033182           64 QDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus        64 ~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                            |+++++..|+++.+..
T Consensus       119 ------~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A          119 ------FSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             ------HHHHHTTCTTCTTHHH
T ss_pred             ------HHHHHHHCcCChhHHH
Confidence                  9999999999876553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.03  E-value=1.1e-09  Score=75.73  Aligned_cols=93  Identities=22%  Similarity=0.238  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      +....++.++|.++...|++++|+..+++++.+        +|....++.++|.++..+|++++|...       +++++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al  154 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYY-------YRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH-------HHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHH
Confidence            567889999999999999999999999999998        578899999999999999999999999       66666


Q ss_pred             hh--------CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           75 EF--------DPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        75 ~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++        +|....++..++.++...++..++..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  190 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET  190 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            66        66677888899999888887766554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.02  E-value=3.4e-09  Score=81.40  Aligned_cols=93  Identities=14%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCC-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL------NPTY-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE   75 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~   75 (125)
                      |..+.+|.++|.++.+.|++++|+..|++++..      +|++ ..+|..+|.++...|++++|...       ++++++
T Consensus       472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~  544 (597)
T 2xpi_A          472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA-------LNQGLL  544 (597)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHH
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHH
Confidence            345678899999999999999999999999888      6664 78999999999999999999999       999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           76 FDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        76 l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++|++..++..++.++...++..++..
T Consensus       545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~  571 (597)
T 2xpi_A          545 LSTNDANVHTAIALVYLHKKIPGLAIT  571 (597)
T ss_dssp             HSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            999999999999999988887776665

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.99  E-value=4.6e-09  Score=64.90  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           24 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        24 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .|+..|++++..+|+++.+++++|.++...|++++|+..       |+++++++|++..++..++.++...++..++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPH-------LRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            578899999999999999999999999999999999999       999999999999999999999988887766654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.98  E-value=5.4e-09  Score=75.21  Aligned_cols=92  Identities=12%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHHHh-cCCCChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182            2 AELRSICHSNRGICFLK-------LGKF-------EESIKECTKALE-LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL   66 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~-------~~~~-------~~A~~~~~~al~-l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~   66 (125)
                      +|..+.+|+++|..+..       .|++       ++|...|++++. ++|++..+|..+|..+...|++++|...    
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~----  121 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI----  121 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH----
Confidence            46677888888888764       4775       889999999998 6898888999999999999999999888    


Q ss_pred             HHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHHHHH
Q 033182           67 MIVMKKILEFDPSNNQ-AKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~~-~~~~l~~~~~~~~~~~~~  100 (125)
                         |+++++++|++.. ++..++.+....++..++
T Consensus       122 ---~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A  153 (308)
T 2ond_A          122 ---YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             ---HHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred             ---HHHHHhccccCccHHHHHHHHHHHHhcCHHHH
Confidence               8888888888876 788888777666655444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.98  E-value=8.1e-09  Score=79.28  Aligned_cols=92  Identities=14%  Similarity=0.116  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ....+|..+|.+|.+.|++++|+..|++++.++|.+..+|..+|.++...|++++|+..       |+++++..|++..+
T Consensus       371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~~~~~~~~~  443 (597)
T 2xpi_A          371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA-------YTTAARLFQGTHLP  443 (597)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHTTTTCSHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCccchHH
Confidence            34566677777777777777777777777777777777777777777777777777777       77777777777666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..++.++...++..++..
T Consensus       444 ~~~l~~~~~~~g~~~~A~~  462 (597)
T 2xpi_A          444 YLFLGMQHMQLGNILLANE  462 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHH
Confidence            6666666666555544433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.96  E-value=6.6e-09  Score=71.82  Aligned_cols=100  Identities=15%  Similarity=0.098  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      +..+.++.++|.++...|++++|+..+++++.+        +|..+.++.++|.++..+|++++|+..+++++.++++..
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            667889999999999999999999999999988        477789999999999999999999999444444443332


Q ss_pred             hh-CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           75 EF-DPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        75 ~l-~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .. +|....++..++.++...++..++..
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~  148 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEY  148 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            22 46677788888888877776655544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.92  E-value=2.4e-08  Score=71.77  Aligned_cols=80  Identities=11%  Similarity=-0.042  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK-ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +|....+|.++|..+...|++++|...|++++.++|.++. +|.++|.++...|++++|...       |+++++.+|.+
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~a~~~~p~~  167 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI-------FKKAREDARTR  167 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH-------HHHHHTSTTCC
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHH-------HHHHHhcCCCC
Confidence            5667789999999999999999999999999999999987 999999999999999999999       88888888877


Q ss_pred             HHHHHHHH
Q 033182           81 NQAKRTIL   88 (125)
Q Consensus        81 ~~~~~~l~   88 (125)
                      ..++....
T Consensus       168 ~~~~~~~a  175 (308)
T 2ond_A          168 HHVYVTAA  175 (308)
T ss_dssp             THHHHHHH
T ss_pred             HHHHHHHH
Confidence            66554433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.92  E-value=2.7e-08  Score=71.64  Aligned_cols=74  Identities=14%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 033182           19 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKL   98 (125)
Q Consensus        19 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~   98 (125)
                      .|++++|+..|++++..+|+++.+++++|.++..+|++++|...       |+++++++|++++++..++.+....++..
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~-------l~~al~~~p~~~~~l~~l~~~~~~~g~~~  251 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV-------LQEALDKDSGHPETLINLVVLSQHLGKPP  251 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence            47788888888888888888888888899999999999999999       88888999999998888888887777654


Q ss_pred             H
Q 033182           99 E   99 (125)
Q Consensus        99 ~   99 (125)
                      +
T Consensus       252 e  252 (291)
T 3mkr_A          252 E  252 (291)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.91  E-value=4.2e-09  Score=75.47  Aligned_cols=91  Identities=14%  Similarity=0.118  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      .+.+|.++|.+|..+|++++|+..|++++.+.|..      +.++.++|.+|... |++++|+..       |++++++.
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~-------~~~Al~~~  148 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC-------YELAGEWY  148 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH-------HHHHHHHH
Confidence            36789999999999999999999999999998754      56899999999996 999999999       88888887


Q ss_pred             CCc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182           78 PSN------NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        78 p~~------~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      |++      ..++..++.++...++..++..
T Consensus       149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  179 (292)
T 1qqe_A          149 AQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            753      4567778888877777666554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.91  E-value=7.2e-09  Score=74.22  Aligned_cols=89  Identities=15%  Similarity=-0.003  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            6 SICHSNRGICFLKL-GKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ..++.++|.+|... |++++|+..|++++.+.|..      ..++.++|.++..+|+|++|+..       |++++++.|
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~~  189 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI-------YSKLIKSSM  189 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHh
Confidence            56899999999996 99999999999999998854      57899999999999999999999       999999998


Q ss_pred             CcHH-------HHHHHHHHHHHHHHHHHHH
Q 033182           79 SNNQ-------AKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        79 ~~~~-------~~~~l~~~~~~~~~~~~~~  101 (125)
                      ++..       ++..++.++...++..++.
T Consensus       190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  219 (292)
T 1qqe_A          190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAA  219 (292)
T ss_dssp             SCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            7654       4566777776666554443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.90  E-value=3.9e-09  Score=79.18  Aligned_cols=94  Identities=16%  Similarity=0.138  Sum_probs=82.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.++.++|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..       ++++++.+|++.
T Consensus       300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~  372 (514)
T 2gw1_A          300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL-------FSEAKRKFPEAP  372 (514)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHH-------HHHHHHHSTTCS
T ss_pred             CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHcccCH
Confidence            3556778899999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++..++..
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~  393 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALK  393 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHH
Confidence            999999988887776665544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.88  E-value=2.8e-08  Score=74.29  Aligned_cols=86  Identities=13%  Similarity=0.049  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHc--hhHHHHHHhHHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKL--EHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~   72 (125)
                      +.....|.|+|.+|..+|++++|+..+++++.+.        +..+..+.++|.++...  ++|++|+..       |++
T Consensus        91 ~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~-------~~k  163 (472)
T 4g1t_A           91 IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC-------FEK  163 (472)
T ss_dssp             TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHH-------HHH
T ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHH-------HHH
Confidence            3456789999999999999999999999999873        45678999999888765  579999999       999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHHH
Q 033182           73 ILEFDPSNNQAKRTILRLQPLAE   95 (125)
Q Consensus        73 a~~l~p~~~~~~~~l~~~~~~~~   95 (125)
                      +++++|++++++..++.+...++
T Consensus       164 al~~~p~~~~~~~~~~~~~~~l~  186 (472)
T 4g1t_A          164 ALEKKPKNPEFTSGLAIASYRLD  186 (472)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhc
Confidence            99999999999988887765544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.85  E-value=1.4e-08  Score=74.74  Aligned_cols=93  Identities=22%  Similarity=0.205  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh-
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE-   75 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~-   75 (125)
                      +..+.++.++|.+|..+|+|++|+..+++++.+.|..      +.+++++|.++..+|++++|+..       ++++++ 
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~-------~~~al~~  253 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY-------FKRAIAV  253 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHH
Confidence            4567889999999999999999999999999886543      36999999999999999999999       777776 


Q ss_pred             ----hC-CCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           76 ----FD-PSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        76 ----l~-p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                          .+ |....++..++.++...++..++..
T Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  285 (383)
T 3ulq_A          254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHE  285 (383)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence                45 7788899999999888877665554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.82  E-value=2e-08  Score=70.55  Aligned_cols=66  Identities=21%  Similarity=0.190  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI   68 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~   68 (125)
                      +....++.++|.++...|++++|+..+++++.+        +|....++..+|.++..+|++++|...++.++.
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            566788999999999999999999999999998        788889999999999999999999999444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.81  E-value=4.7e-08  Score=75.74  Aligned_cols=96  Identities=11%  Similarity=-0.006  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-----NPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      |.-...+.|+|.+|..+|+|++|+..+++++.+     +|+   -+..+.++|.+|..+|+|++|...+++|+.++++.+
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l  427 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH  427 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            556788999999999999999999999999866     444   467899999999999999999999999999977666


Q ss_pred             hhCCCcHH---HHHHHHHHHHHHHHHHHH
Q 033182           75 EFDPSNNQ---AKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        75 ~l~p~~~~---~~~~l~~~~~~~~~~~~~  100 (125)
                      -  |+++.   +...+..++..++...++
T Consensus       428 G--~~Hp~~~~~~~~l~~~~~e~~~~~~a  454 (490)
T 3n71_A          428 G--PSHPITKDLEAMRMQTEMELRMFRQN  454 (490)
T ss_dssp             C--TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--CCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            5  55554   444555555444444333

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.80  E-value=1.7e-08  Score=70.96  Aligned_cols=93  Identities=22%  Similarity=0.248  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      +....++.++|.++...|++++|+..+++++.+.        |....++.++|.++...|++++|+..       +++++
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~a~  180 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY-------YQRAL  180 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH-------HHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHH
Confidence            5667889999999999999999999999999884        67788999999999999999999999       77776


Q ss_pred             hh--------CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           75 EF--------DPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        75 ~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++        +|....++..++.++...++..++..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  216 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET  216 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            66        66677788889998888877766654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.76  E-value=1.6e-09  Score=65.78  Aligned_cols=61  Identities=20%  Similarity=0.344  Sum_probs=57.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHh
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      +|..+.+|+++|.++..+|++++|+..+++++.++|++      ..+++++|.++..+|+++.|+..
T Consensus        34 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           34 QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhH
Confidence            46678899999999999999999999999999999999      99999999999999999888877

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.75  E-value=1.6e-07  Score=68.92  Aligned_cols=93  Identities=10%  Similarity=0.014  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM----KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF--   76 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l--   76 (125)
                      +.....+..+|.++...|++++|+..|++++.++|++.    .+++.+|.++..+|++++|+..       +++++++  
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~~  117 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQY-------HKHDLTLAK  117 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHH
Confidence            45667788999999999999999999999999999986    6899999999999999999999       6666665  


Q ss_pred             ----CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           77 ----DPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        77 ----~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                          +|....++..++.++...++..++..
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  147 (411)
T 4a1s_A          118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAI  147 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HccCchHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                56667788888888877776655544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.75  E-value=9.5e-08  Score=66.90  Aligned_cols=80  Identities=13%  Similarity=-0.026  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      |..+.+++.+|.++...|++++|+..|++++.  |.++.+++++|.++..    .+++++|+..       |+++++.+ 
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~-------~~~a~~~~-   72 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASF-------YAKACDLN-   72 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHTT-
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHH-------HHHHHHCC-
Confidence            45666777777777777777777777777777  6667777777777777    7777777777       77776654 


Q ss_pred             CcHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPL   93 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~   93 (125)
                       ++.+...++.++..
T Consensus        73 -~~~a~~~lg~~~~~   86 (273)
T 1ouv_A           73 -YSNGCHLLGNLYYS   86 (273)
T ss_dssp             -CHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHhC
Confidence             56667777766655

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.75  E-value=4.5e-08  Score=65.09  Aligned_cols=92  Identities=10%  Similarity=0.037  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALE------LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-   76 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-   76 (125)
                      ..+.++.++|.++...|++++|+..+++++.      ..|..+.++.++|.++..+|++++|...       +++++++ 
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~   96 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC-------FLEERELL   96 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHH
Confidence            4678899999999999999999999999998      4566788999999999999999999999       6666665 


Q ss_pred             --CCC----cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           77 --DPS----NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        77 --~p~----~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                        .|+    ...++..++.++...++..++..
T Consensus        97 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  128 (203)
T 3gw4_A           97 ASLPEDPLAASANAYEVATVALHFGDLAGARQ  128 (203)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence              342    34567778888777776655544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.75  E-value=2.6e-08  Score=71.04  Aligned_cols=84  Identities=14%  Similarity=0.030  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ..++.++|.+|..+|+|++|+..|++++..       .+..+.+++++|.+|..+|+|++|+..       +++++++.+
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~-------~~~al~~~~  227 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ-------VNKAIEISC  227 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHH
Confidence            557999999999999999999999999942       244567999999999999999999999       666666543


Q ss_pred             C------cHHHHHHHHHHHHHHHH
Q 033182           79 S------NNQAKRTILRLQPLAEE   96 (125)
Q Consensus        79 ~------~~~~~~~l~~~~~~~~~   96 (125)
                      .      ...++..++.++..+++
T Consensus       228 ~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          228 RINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             HcCcHHHHHHHHHHHHHHHHHhCC
Confidence            3      37789999999988873

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.74  E-value=1e-07  Score=72.85  Aligned_cols=83  Identities=8%  Similarity=-0.008  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CC---CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-----NP---TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      |.-...+.|+|.+|..+|+|++|+..+++++.+     +|   +-+..+.++|.+|..+|+|++|...+++|+.+++..+
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l  416 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH  416 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence            556788999999999999999999999999865     44   4467899999999999999999999999999976554


Q ss_pred             hhCCCcHHHHHHH
Q 033182           75 EFDPSNNQAKRTI   87 (125)
Q Consensus        75 ~l~p~~~~~~~~l   87 (125)
                        -|+++.+....
T Consensus       417 --G~~Hp~~~~l~  427 (433)
T 3qww_A          417 --GKDHPYISEIK  427 (433)
T ss_dssp             --CTTCHHHHHHH
T ss_pred             --CCCChHHHHHH
Confidence              47777765433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.74  E-value=6.4e-08  Score=71.10  Aligned_cols=93  Identities=11%  Similarity=0.071  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNP-------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE   75 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~   75 (125)
                      +..+.+++++|.+|..+|+++.|+..+.+++.+.+       ..+.++.++|.++..+|++++|...       ++++++
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~  212 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH-------FQKAYS  212 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHH
Confidence            34678999999999999999999999999999843       3457999999999999999999999       666666


Q ss_pred             hCCCc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182           76 FDPSN------NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        76 l~p~~------~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +.|..      ..++..++.++...++..++..
T Consensus       213 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  245 (383)
T 3ulq_A          213 MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP  245 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            54322      2478888888887777666554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.73  E-value=4.2e-08  Score=69.97  Aligned_cols=89  Identities=15%  Similarity=0.035  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKAL---ELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      ...++.++|.+|...|+|++|+..|++++   ...|++    ..+++++|.++..+|+|++|+..       +++++++.
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~-------~~kal~~~  226 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ-------VNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH-------HHHHHHHH
Confidence            35689999999999999999999999999   445553    36999999999999999999999       55555543


Q ss_pred             CC------cHHHHHHHHHHHHHHHHHHHH
Q 033182           78 PS------NNQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        78 p~------~~~~~~~l~~~~~~~~~~~~~  100 (125)
                      +.      ...++..++.++..+++..++
T Consensus       227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          227 CRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            22      367888899988887765554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.72  E-value=7.1e-08  Score=61.08  Aligned_cols=56  Identities=27%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHh
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      .++.++|.++...|++++|+..+++++.+.+..      ..+++++|.++..+|++++|...
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  111 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  111 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            466666777777777777777776666654332      45666667777777777777766

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.72  E-value=4.9e-08  Score=61.83  Aligned_cols=93  Identities=18%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      +..+.++.++|.++...|++++|+..+++++.+.+..      ..++.++|.++..+|++++|...       +++++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~a~~~   78 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEY-------YKKTLLL   78 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHH
Confidence            4567889999999999999999999999999886543      25899999999999999999999       6666655


Q ss_pred             CCC------cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           77 DPS------NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        77 ~p~------~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .+.      ...++..++.++...++..++..
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  110 (164)
T 3ro3_A           79 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  110 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            432      14466677777766665554443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.72  E-value=1.1e-07  Score=71.03  Aligned_cols=86  Identities=21%  Similarity=0.085  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            2 AELRSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      +|..+.++.++|..+..    .+++++|+..+++++..+|.++.++.++|.++...|++++|+..       ++++++.+
T Consensus       205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~  277 (472)
T 4g1t_A          205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIEL-------LKKALEYI  277 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHS
T ss_pred             CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHH-------HHHHHHhC
Confidence            34556777788877655    46788999999999999999999999999999999999999999       99999999


Q ss_pred             CCcHHHHHHHHHHHHHH
Q 033182           78 PSNNQAKRTILRLQPLA   94 (125)
Q Consensus        78 p~~~~~~~~l~~~~~~~   94 (125)
                      |++..++..++.++...
T Consensus       278 p~~~~~~~~lg~~y~~~  294 (472)
T 4g1t_A          278 PNNAYLHCQIGCCYRAK  294 (472)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHH
Confidence            99999999999887544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.71  E-value=7.6e-08  Score=75.65  Aligned_cols=87  Identities=14%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch--hHHHHHHhHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGK----------FEESIKECTKALELNPTYMKALIRRAEAHEKLE--HFEEAIAGIQDLMIV   69 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~   69 (125)
                      +|...++|+.|+.+....++          +++++..+++++..+|++..+|++++-++..++  +|++|+..       
T Consensus        59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~-------  131 (567)
T 1dce_A           59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL-------  131 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHH-------
T ss_pred             CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHH-------
Confidence            56778899999999999988          999999999999999999999999999999999  77999999       


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182           70 MKKILEFDPSNNQAKRTILRLQPLAE   95 (125)
Q Consensus        70 ~~~a~~l~p~~~~~~~~l~~~~~~~~   95 (125)
                      +.++++++|.+..++....-+...++
T Consensus       132 ~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A          132 CARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhccccccHHHHHHHHHHHcC
Confidence            99999999999999988887776665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.71  E-value=1.4e-07  Score=74.22  Aligned_cols=86  Identities=14%  Similarity=0.069  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|....+|++|+.+..+.+  +|++++..+++++++||.+..+|..++.++..+| .+++++++       +.++++.+|
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~-------~~~~I~~~p  175 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF-------TDSLITRNF  175 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH-------HHTTTTTTC
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH-------HHHHHHHCC
Confidence            4667789999999999999  7799999999999999999999999999999999 99999999       999999999


Q ss_pred             CcHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLA   94 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~   94 (125)
                      ++..++...+.+...+
T Consensus       176 ~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          176 SNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhh
Confidence            9999999999987765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.70  E-value=6e-08  Score=71.33  Aligned_cols=92  Identities=10%  Similarity=-0.003  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh--
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE--   75 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~--   75 (125)
                      ..+.++.++|.+|...|+|++|+..+++++.+.+      ..+.++.++|.++..+|++++|+..       ++++++  
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~-------~~~al~~~  252 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH-------FQKAAKVS  252 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHH
Confidence            4577888999999999999999999999988743      2356888999999999999999999       666666  


Q ss_pred             ---hCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           76 ---FDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        76 ---l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                         .+|....+...++.++...++..++..
T Consensus       253 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  282 (378)
T 3q15_A          253 REKVPDLLPKVLFGLSWTLCKAGQTQKAFQ  282 (378)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence               667778888888888887776665554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.69  E-value=1.1e-07  Score=69.68  Aligned_cols=88  Identities=13%  Similarity=0.046  Sum_probs=81.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHHchh------HHHHHHhHHHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFE--ESIKECTKALELNPTYMKALIRRAEAHEKLEH------FEEAIAGIQDLMIVMKKI   73 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~------~~~A~~~~~~~~~~~~~a   73 (125)
                      +|.+..+|+.|+.+....+.++  +++..+++++..||.|..+|+.++.++..++.      ++++++.       +.++
T Consensus       140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~-------~~~a  212 (306)
T 3dra_A          140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNY-------VKDK  212 (306)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH-------HHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHH-------HHHH
Confidence            4677889999999999999998  99999999999999999999999999999998      9999999       9999


Q ss_pred             HhhCCCcHHHHHHHHHHHHHHHH
Q 033182           74 LEFDPSNNQAKRTILRLQPLAEE   96 (125)
Q Consensus        74 ~~l~p~~~~~~~~l~~~~~~~~~   96 (125)
                      +..+|+|..++..+.-+....+.
T Consensus       213 I~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          213 IVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCCccHHHHHHHHHHhcCC
Confidence            99999999999999988877654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.69  E-value=3e-07  Score=70.07  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-----NPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      +.....+.|+|.+|..+|+|++|+..+++++..     +|+   -+..++++|.+|..+|++++|...+++|+.+++..+
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l  405 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH  405 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            556788999999999999999999999999865     444   466899999999999999999999999999977665


Q ss_pred             hhCCCcHHHHHHHHHH
Q 033182           75 EFDPSNNQAKRTILRL   90 (125)
Q Consensus        75 ~l~p~~~~~~~~l~~~   90 (125)
                      -  |+++.+...+..+
T Consensus       406 G--~~Hp~~~~~~~~l  419 (429)
T 3qwp_A          406 G--REHSLIEDLILLL  419 (429)
T ss_dssp             C--TTSHHHHHHHHHH
T ss_pred             C--CCChHHHHHHHHH
Confidence            4  6666655544433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.68  E-value=9.7e-08  Score=70.06  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF--   76 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l--   76 (125)
                      ...++.++|.++...|++++|+..+++++.+      +|....++..+|.++..+|++++|...       +++++++  
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~~  157 (411)
T 4a1s_A           85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC-------CERHLTLAR  157 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHH
Confidence            3578999999999999999999999999998      678899999999999999999999999       6666555  


Q ss_pred             ----CCCcHHHHHHHHHHHHHHHH
Q 033182           77 ----DPSNNQAKRTILRLQPLAEE   96 (125)
Q Consensus        77 ----~p~~~~~~~~l~~~~~~~~~   96 (125)
                          .|....++..++.++...++
T Consensus       158 ~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          158 QLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhchHHHHHHHHHHHHHHHHcCc
Confidence                45566788888888888877

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.67  E-value=5.8e-08  Score=58.99  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=54.2

Q ss_pred             cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           35 LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        35 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .+|+++.+++++|.++..+|++++|+..       |+++++++|++..++..++.++...++..++..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~   62 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALAL-------FEELVETDPDYVGTYYHLGKLYERLDRTDDAID   62 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            4799999999999999999999999999       999999999999999999999988887766554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.66  E-value=2.9e-07  Score=59.24  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhcC-C-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            5 RSICHSNRGICFLKLGKFEE---SIKECTKALELN-P-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      ....-++.|+++.+..+...   ++..++..+.-+ | ...+++|.+|..++++|+|+.|...       ++.+++.+|+
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~-------~~~lL~~eP~  106 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY-------VRGLLQTEPQ  106 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHhCCC
Confidence            35667889999999877655   999999999988 6 6788999999999999999999999       9999999999


Q ss_pred             cHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAE   95 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~   95 (125)
                      |..+......+.+++.
T Consensus       107 n~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A          107 NNQAKELERLIDKAMK  122 (126)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999887777766554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.66  E-value=2.9e-07  Score=66.79  Aligned_cols=76  Identities=14%  Similarity=0.090  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CC-ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELN--PT-YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ..+++++|.++..+|++++|+..|++++.-.  |. .+.+++++|.++.++|+.++|...       |++++..+|+ ..
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~-------l~~a~a~~P~-~~  242 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL-------LEWLQTTHPE-PK  242 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHSCC-HH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCc-HH
Confidence            4589999999999999999999999998654  55 678999999999999999999999       9999999999 77


Q ss_pred             HHHHHHH
Q 033182           83 AKRTILR   89 (125)
Q Consensus        83 ~~~~l~~   89 (125)
                      +...|..
T Consensus       243 ~~~aL~~  249 (282)
T 4f3v_A          243 VAAALKD  249 (282)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            7766643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.65  E-value=7.3e-08  Score=64.05  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL------NP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE   75 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~   75 (125)
                      +..+.++.++|.++..+|++++|+..+++++.+      +| ....++.++|.++..+|++++|...       ++++++
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~  135 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE-------YEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHH
Confidence            456788999999999999999999999999998      33 3467899999999999999999999       666655


Q ss_pred             hCC--Cc----HHHHHHHHHHHHHHHHHHHHHH
Q 033182           76 FDP--SN----NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        76 l~p--~~----~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +.+  ++    ..+...++.++...++..++..
T Consensus       136 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  168 (203)
T 3gw4_A          136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ  168 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            422  22    2245677777777766655543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.65  E-value=1.2e-07  Score=68.93  Aligned_cols=91  Identities=20%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      .+.++.++|.++...|++++|+..+++++.+.|..      ..++.++|.++..+|++++|...       +++++++.+
T Consensus       226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~a~~~~~  298 (406)
T 3sf4_A          226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY-------HLKHLAIAQ  298 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH-------HHHHHHHHH
Confidence            44578888888888888888888888888877655      67888888888888888888888       666666543


Q ss_pred             Cc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182           79 SN------NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        79 ~~------~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..      ..++..++.++...++..++..
T Consensus       299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          299 ELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            22      4566777777777766555544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.65  E-value=6.3e-08  Score=70.37  Aligned_cols=93  Identities=18%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM------KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      +..+.++.++|.++...|++++|+..+++++.+.|...      .++.++|.++..+|++++|...       +++++++
T Consensus       184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~  256 (406)
T 3sf4_A          184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY-------YKKTLLL  256 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH-------HHHHHHH
Confidence            45567899999999999999999999999999876543      4999999999999999999999       7777776


Q ss_pred             CCCc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182           77 DPSN------NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        77 ~p~~------~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .|..      ..++..++.++...++..++..
T Consensus       257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  288 (406)
T 3sf4_A          257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  288 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            6544      5577778887777666655544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.65  E-value=2.8e-07  Score=67.69  Aligned_cols=68  Identities=15%  Similarity=0.067  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALE-----LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ..+.++.++|.+|..+|++++|+..+++++.     .+|..+.+++++|.++..+|++++|...       +++++++.+
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~~  292 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQF-------IEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHH
Confidence            4567899999999999999999999999999     7888899999999999999999999999       888888743

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.64  E-value=1.2e-07  Score=69.37  Aligned_cols=90  Identities=12%  Similarity=-0.048  Sum_probs=81.5

Q ss_pred             ChhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCChHHHHHHHHHH----HHc---hhHHHHHHhHHHHHHHHH
Q 033182            1 MAELRSICHSNRGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAH----EKL---EHFEEAIAGIQDLMIVMK   71 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~~~~~~~----~~~---~~~~~A~~~~~~~~~~~~   71 (125)
                      ++|...++|+.|+.+....+  ++++++..++.++..+|++..+|+.++.++    ...   +.+++++..       +.
T Consensus        62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~-------~~  134 (306)
T 3dra_A           62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDI-------LE  134 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHH-------HH
T ss_pred             HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHH-------HH
Confidence            36778899999999999999  999999999999999999999999999999    766   788999999       99


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           72 KILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        72 ~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      ++++.+|.+-.++....-+...++..
T Consensus       135 ~~l~~~pkny~aW~~R~~vl~~l~~~  160 (306)
T 3dra_A          135 AMLSSDPKNHHVWSYRKWLVDTFDLH  160 (306)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            99999999999998888777766543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.64  E-value=1.9e-06  Score=63.72  Aligned_cols=86  Identities=14%  Similarity=0.066  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-HHHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLGK--FEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|....+|+.|+.+....++  +++++..+++++..||.|..+|..++.++...|. +++++++       +.++++.+|
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~-------~~~~I~~~p  176 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF-------TDSLITRNF  176 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHCS
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH-------HHHHHHHCC
Confidence            46778999999999999994  9999999999999999999999999999999999 6999999       999999999


Q ss_pred             CcHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLA   94 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~   94 (125)
                      +|..++.....+...+
T Consensus       177 ~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          177 SNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999998887766

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.63  E-value=2.3e-07  Score=65.16  Aligned_cols=98  Identities=10%  Similarity=0.028  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      .....+...|.++...|++++|+..+++++..+|++    ..++..+|.++...|++++|+..++.++.+.... ...|.
T Consensus         3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~   81 (338)
T 3ro2_A            3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLG   81 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-cccHH
Confidence            445678889999999999999999999999999998    5789999999999999999999944333332211 11344


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ...++..++.++...++..++..
T Consensus        82 ~~~~~~~l~~~~~~~g~~~~A~~  104 (338)
T 3ro2_A           82 EAKASGNLGNTLKVLGNFDEAIV  104 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHH
Confidence            56677777777776665555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.62  E-value=2.1e-08  Score=60.07  Aligned_cols=64  Identities=17%  Similarity=0.197  Sum_probs=55.9

Q ss_pred             hHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            3 ELRSI-CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         3 ~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      |..+. +++++|.++..+|++++|+..|++++.++|++..++.+        +.+.++...       |+++...+|++.
T Consensus        31 p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~-------~~~~~~~~p~~~   95 (99)
T 2kc7_A           31 PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNF-------YNKDMYNQLEHH   95 (99)
T ss_dssp             SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHH-------HCCTTHHHHCCS
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHH-------HHHHhccCcccc
Confidence            45667 99999999999999999999999999999999998865        777888888       888888877653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.61  E-value=5.8e-07  Score=68.93  Aligned_cols=92  Identities=12%  Similarity=0.083  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHHHHHH-------hcCHH-------HHHHHHHHHHh-cCCCChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182            2 AELRSICHSNRGICFLK-------LGKFE-------ESIKECTKALE-LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL   66 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~al~-l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~   66 (125)
                      .|..+.+|+++|..+.+       .|+++       +|...+++++. ++|++...|+.+|..+...|++++|...    
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~----  343 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI----  343 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH----
Confidence            35677889999998886       68876       89999999997 7999999999999999999999999999    


Q ss_pred             HHHHHHHHhhCCCcH-HHHHHHHHHHHHHHHHHHH
Q 033182           67 MIVMKKILEFDPSNN-QAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~-~~~~~l~~~~~~~~~~~~~  100 (125)
                         |+++++++|.+. .++.....+....+....+
T Consensus       344 ---~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A  375 (530)
T 2ooe_A          344 ---YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG  375 (530)
T ss_dssp             ---HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHhCccccCchHHHHHHHHHHHHhcCHHHH
Confidence               999999999875 5777777776665554443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.61  E-value=1e-07  Score=68.62  Aligned_cols=65  Identities=11%  Similarity=0.113  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ..++.++|.+|.. |++++|+..|++++.+.|..      ..++.++|.++..+|+|++|+..       |++++++.|
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~~  186 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAAS-------LQKEKSMYK  186 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHH
Confidence            4556667777766 77777777777776665532      45666677777777777777777       555555543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.59  E-value=4.9e-07  Score=66.92  Aligned_cols=83  Identities=13%  Similarity=0.035  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc--------------hhHHHHHHhHHHH
Q 033182            2 AELRSICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKL--------------EHFEEAIAGIQDL   66 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------------~~~~~A~~~~~~~   66 (125)
                      +|.+..+|..|+.+....|. +++++..+++++..+|.|..+|+.++.++..+              +.++++++.    
T Consensus       140 dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~----  215 (331)
T 3dss_A          140 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL----  215 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHH----
Confidence            57788999999999999998 69999999999999999999999999999988              778999999    


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182           67 MIVMKKILEFDPSNNQAKRTILRLQ   91 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~~~~~~l~~~~   91 (125)
                         +.+++..+|++..++..+.-+.
T Consensus       216 ---~~~ai~~~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          216 ---VQNAFFTDPNDQSAWFYHRWLL  237 (331)
T ss_dssp             ---HHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ---HHHHHHhCCCCHHHHHHHHHHH
Confidence               9999999999999997654443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.58  E-value=2.5e-07  Score=63.32  Aligned_cols=82  Identities=9%  Similarity=-0.138  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHH
Q 033182            4 LRSICHSNRGICFLK----LGKFEESIKECTKALELNP--TYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKI   73 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a   73 (125)
                      ..+.+++++|.+|..    .+++++|+..|++++..+|  .++.+++++|.+|..    .+++++|+.+       |+++
T Consensus        83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~-------~~~A  155 (212)
T 3rjv_A           83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY-------FKGS  155 (212)
T ss_dssp             TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH-------HHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHH
Confidence            456778889999887    7889999999999999888  468899999999998    8889999999       8888


Q ss_pred             HhhCCCcHHHHHHHHHHHHH
Q 033182           74 LEFDPSNNQAKRTILRLQPL   93 (125)
Q Consensus        74 ~~l~p~~~~~~~~l~~~~~~   93 (125)
                      .++ |+++.+...|+.++..
T Consensus       156 ~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          156 SSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHT-SCTTHHHHHHHHHHHH
T ss_pred             HHc-CCCHHHHHHHHHHHHc
Confidence            887 6777788888887754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.58  E-value=2.3e-07  Score=65.18  Aligned_cols=85  Identities=18%  Similarity=0.157  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ...++.++|.++...|++++|+..+++++.+      .|..+.++..+|.++..+|++++|...       +++++++.|
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~~  114 (338)
T 3ro2_A           42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC-------CQRHLDISR  114 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHHHH
Confidence            3678999999999999999999999999988      566788999999999999999999999       666666544


Q ss_pred             Cc------HHHHHHHHHHHHHHHH
Q 033182           79 SN------NQAKRTILRLQPLAEE   96 (125)
Q Consensus        79 ~~------~~~~~~l~~~~~~~~~   96 (125)
                      ..      ..++..++.++...++
T Consensus       115 ~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A          115 ELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCchHHHHHHHHHHHHHHHcCc
Confidence            32      3377778888777776

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.57  E-value=5.7e-07  Score=62.88  Aligned_cols=78  Identities=12%  Similarity=0.073  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182            5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      .+.+++++|.++..    .+++++|+..|++++..+  ++.+++++|.++..    .+++++|+..       |+++++.
T Consensus        37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~-------~~~a~~~  107 (273)
T 1ouv_A           37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQY-------YSKACDL  107 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHH-------HHHHHHc
Confidence            34566777777777    777777777777777665  66777777777777    7777777777       6666665


Q ss_pred             CCCcHHHHHHHHHHHHH
Q 033182           77 DPSNNQAKRTILRLQPL   93 (125)
Q Consensus        77 ~p~~~~~~~~l~~~~~~   93 (125)
                        +++.+...++.++..
T Consensus       108 --~~~~a~~~lg~~~~~  122 (273)
T 1ouv_A          108 --KYAEGCASLGGIYHD  122 (273)
T ss_dssp             --TCHHHHHHHHHHHHH
T ss_pred             --CCccHHHHHHHHHHc
Confidence              356666666666655

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.56  E-value=2.3e-07  Score=66.14  Aligned_cols=69  Identities=20%  Similarity=0.230  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMK   71 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~   71 (125)
                      +..+.+++|+|.+|.++|+|++|+..+++++.+.+..      +.+++++|.++..+| .+++|...+++|+.+++
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            4566799999999999999999999999999987543      889999999999999 57999999555555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.55  E-value=1.4e-06  Score=62.02  Aligned_cols=90  Identities=18%  Similarity=0.039  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH---hh
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL---EF   76 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~---~l   76 (125)
                      ...++.+|.++...|++++|+..+++++...+..      ..++.++|.+|..+|+|++|+..       |++++   +.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~-------~~kal~~~~~  187 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL-------FEQILKQLEA  187 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHh
Confidence            3456789999999999999999999999876543      67999999999999999999999       66666   44


Q ss_pred             CCCcH----HHHHHHHHHHHHHHHHHHHHH
Q 033182           77 DPSNN----QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        77 ~p~~~----~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .|++.    .++..++.++...++..++..
T Consensus       188 ~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~  217 (293)
T 2qfc_A          188 LHDNEEFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence            56543    577888888877777666654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.53  E-value=3.3e-06  Score=54.67  Aligned_cols=84  Identities=13%  Similarity=0.027  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            6 SICHSNRGICFLKLGK---FEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +..-++.|+++++..+   ...++..++..++-+| ...+++|.+|..+.++|+|+.|..+       .+.+++.+|+|.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y-------~d~lL~~eP~N~  112 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY-------VDTLFEHERNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHTTCTTCH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHhhCCCCH
Confidence            3456788888888654   5679999999999999 4588999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEE   96 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~   96 (125)
                      .+......+.+++..
T Consensus       113 QA~~Lk~~Ie~ki~k  127 (134)
T 3o48_A          113 QVGALKSMVEDKIQK  127 (134)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            998887777766653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.53  E-value=7e-07  Score=66.55  Aligned_cols=90  Identities=12%  Similarity=-0.000  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-h-hHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKL-E-HFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|...++|+.|+.+....+ .+++++..+++++..+|++..+|+.++.++..+ + ++++++..       +.++++.+|
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~-------~~k~L~~dp  156 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY-------IHGSLLPDP  156 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH-------HHHHTSSCT
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH-------HHHHHHhCC
Confidence            5778899999999999999 599999999999999999999999999999998 7 88999999       999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAEEKL   98 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~   98 (125)
                      .|-.++....-+...++...
T Consensus       157 kNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          157 KNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             TCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhcccc
Confidence            99999988888877766543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.52  E-value=2.2e-07  Score=54.15  Aligned_cols=52  Identities=29%  Similarity=0.368  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE   54 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~   54 (125)
                      |..+.+++++|.++...|++++|+..+++++.++|.++.++.++|.++..+|
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            5567889999999999999999999999999999999999999999987764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.50  E-value=1.8e-07  Score=67.36  Aligned_cols=90  Identities=14%  Similarity=0.074  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ...+|.++|.+|..+|++++|+..|++++.+.+.      ...++.++|.+|.. |++++|+..       |++++++.|
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~-------~~~Al~~~~  146 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL-------YQQAAAVFE  146 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH-------HHHHHHHHH
Confidence            3568999999999999999999999999988532      25789999999999 999999999       666666655


Q ss_pred             Cc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182           79 SN------NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        79 ~~------~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..      ..++..++.++..+++..++..
T Consensus       147 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A          147 NEERLRQAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            32      4567778888777776655544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.50  E-value=6.7e-07  Score=66.67  Aligned_cols=88  Identities=9%  Similarity=0.008  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-------HHHHHHhHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFE--------ESIKECTKALELNPTYMKALIRRAEAHEKLEH-------FEEAIAGIQDL   66 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~   66 (125)
                      +|.+..+|..|+.+..+.+.++        +++..+++++..+|.|..+|+.++.++..++.       ++++++.    
T Consensus       155 dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~----  230 (349)
T 3q7a_A          155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY----  230 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH----
Confidence            5778889999999999999888        99999999999999999999999999999987       7888888    


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 033182           67 MIVMKKILEFDPSNNQAKRTILRLQPLAEE   96 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~   96 (125)
                         +.+++.++|+|..++..+.-+....+.
T Consensus       231 ---~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          231 ---ILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             ---HHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence               999999999999999998887765543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.46  E-value=5.7e-06  Score=54.18  Aligned_cols=82  Identities=13%  Similarity=0.016  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            6 SICHSNRGICFLKLGK---FEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ...-++.|+++.+..+   -..++..++..+.-+| ...+++|.+|..+.++|+|++|..+       .+.+++.+|+|.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y-------~d~lL~~eP~n~  111 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY-------VDTLFEHERNNK  111 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH-------HHHHHHTCCCCH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHH-------HHHHHhcCCCcH
Confidence            4567888889888765   4689999999999888 4678999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLA   94 (125)
Q Consensus        82 ~~~~~l~~~~~~~   94 (125)
                      .+......+.+++
T Consensus       112 QA~~Lk~~Ie~~i  124 (144)
T 1y8m_A          112 QVGALKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9887777666544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.44  E-value=3.9e-06  Score=64.30  Aligned_cols=77  Identities=10%  Similarity=-0.056  Sum_probs=66.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .|....+|.+++..+.+.|++++|...|++++.++|.++ .+|..+|.++...|++++|...       |+++++..|.+
T Consensus       317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~Al~~~~~~  389 (530)
T 2ooe_A          317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI-------FKKAREDARTR  389 (530)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHTCTTCC
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH-------HHHHHhccCCc
Confidence            356678999999999999999999999999999999985 6999999999999999999998       88888877765


Q ss_pred             HHHHH
Q 033182           81 NQAKR   85 (125)
Q Consensus        81 ~~~~~   85 (125)
                      ...+.
T Consensus       390 ~~~~~  394 (530)
T 2ooe_A          390 HHVYV  394 (530)
T ss_dssp             THHHH
T ss_pred             hHHHH
Confidence            55443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.40  E-value=1.9e-06  Score=62.49  Aligned_cols=92  Identities=9%  Similarity=0.026  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-C-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC--C
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT-Y-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD--P   78 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~--p   78 (125)
                      |... ..+.+|..+++.++|++|+..++.+....+. . ..+++.+|.++..+|++++|+.+       |++++.-.  |
T Consensus       133 p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~-------l~~a~~g~~~P  204 (282)
T 4f3v_A          133 SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR-------LTEANDSPAGE  204 (282)
T ss_dssp             CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTSTTTT
T ss_pred             CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHhcCCCCc
Confidence            4455 8899999999999999999999988776422 2 45899999999999999999999       99998654  6


Q ss_pred             C-cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           79 S-NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        79 ~-~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      . ..++...++.+...+++..++..
T Consensus       205 ~~~~da~~~~glaL~~lGr~deA~~  229 (282)
T 4f3v_A          205 ACARAIAWYLAMARRSQGNESAAVA  229 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHH
Confidence            6 66788999999988887766654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.37  E-value=2.3e-06  Score=58.48  Aligned_cols=76  Identities=13%  Similarity=0.086  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch----hHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE----HFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++.+++++|.+|...+++++|+..|++++..  .++.+++++|.+|.. +    ++++|+.+       |+++.+  +++
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~-------~~~A~~--~g~   84 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQL-------AEKAVE--AGS   84 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHH-------HHHHHH--TTC
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHH-------HHHHHH--CCC
Confidence            4556667777777777777777777776554  456666666666666 5    66666666       555533  455


Q ss_pred             HHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQP   92 (125)
Q Consensus        81 ~~~~~~l~~~~~   92 (125)
                      +.+...++.++.
T Consensus        85 ~~a~~~Lg~~y~   96 (212)
T 3rjv_A           85 KSGEIVLARVLV   96 (212)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            566666655553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.35  E-value=2.9e-06  Score=63.67  Aligned_cols=78  Identities=18%  Similarity=0.124  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.++.-.+..+...|++++|+..+++++.++|+ ..+|..+|.++.-.|++++|++.       |++|+.++|..+
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~-------~~~AlrL~P~~~  344 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADA-------YLTAFNLRPGAN  344 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSCSHH
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCcC
Confidence            3556778888888888899999999999999999985 67889999999999999999999       999999999876


Q ss_pred             HHHHHHH
Q 033182           82 QAKRTIL   88 (125)
Q Consensus        82 ~~~~~l~   88 (125)
                       ++.++.
T Consensus       345 -t~~~~~  350 (372)
T 3ly7_A          345 -TLYWIE  350 (372)
T ss_dssp             -HHHHHH
T ss_pred             -hHHHHh
Confidence             455443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.31  E-value=6.8e-06  Score=59.72  Aligned_cols=90  Identities=14%  Similarity=0.048  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      ..++.++|.++...|++++|+..+++++.+.        |....++.++|.++...|++++|...       +++++.+.
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~  165 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS-------ARSGIEVL  165 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHHh
Confidence            4567899999999999999999999999875        44567888999999999999999999       88888877


Q ss_pred             CC-----cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           78 PS-----NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        78 p~-----~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      |.     ...++..++.++...++..++..
T Consensus       166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  195 (373)
T 1hz4_A          166 SSYQPQQQLQCLAMLIQCSLARGDLDNARS  195 (373)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            64     23466777777777766655543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.27  E-value=8.2e-06  Score=52.36  Aligned_cols=72  Identities=10%  Similarity=0.045  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182            5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      .+.+++++|.+|..    .+++++|+..|+++...  .++.+++++|.+|..    .+++++|..+       |+++.+.
T Consensus        56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~-------~~~Aa~~  126 (138)
T 1klx_A           56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKT-------FEKACRL  126 (138)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHH-------HHHHHHC
Confidence            45678888888887    78888888888888776  568888888888888    8888888888       8877775


Q ss_pred             CCCcHHHHHHH
Q 033182           77 DPSNNQAKRTI   87 (125)
Q Consensus        77 ~p~~~~~~~~l   87 (125)
                        +++.+...+
T Consensus       127 --g~~~A~~~l  135 (138)
T 1klx_A          127 --GSEDACGIL  135 (138)
T ss_dssp             --TCHHHHHHC
T ss_pred             --CCHHHHHHH
Confidence              444444433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.24  E-value=7.8e-06  Score=62.04  Aligned_cols=80  Identities=16%  Similarity=0.043  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182            5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      .+.+++++|.+|..    .+++++|+..|++++..+  ++.+++++|.+|..    .+++++|..+       |+++++.
T Consensus       362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~-------~~~A~~~  432 (490)
T 2xm6_A          362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAW-------FDTASTN  432 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHHHHC
Confidence            46789999999999    899999999999998865  68899999999998    8999999999       9999999


Q ss_pred             CCC---cHHHHHHHHHHHHH
Q 033182           77 DPS---NNQAKRTILRLQPL   93 (125)
Q Consensus        77 ~p~---~~~~~~~l~~~~~~   93 (125)
                      +|+   ++.+...++.+...
T Consensus       433 ~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          433 DMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             HCCHHHHHHHHHHHTTSCHH
T ss_pred             CCCCcCCHHHHHHHHhcCHh
Confidence            854   88888888777654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.21  E-value=4.3e-06  Score=64.75  Aligned_cols=93  Identities=17%  Similarity=0.048  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-CCCc
Q 033182           10 SNRGICFLKLGKFEESIKECTKALEL-----NPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-DPSN   80 (125)
Q Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~al~l-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-~p~~   80 (125)
                      .+.+..+..+|+|++|+..+++++.+     +|+   -+..+.++|.+|..+|+|++|...+++++.++++.+-- +|+.
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            34556677899999999999999876     344   46789999999999999999999999999888776653 3455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++..|+.++..+++..++..
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~  414 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHG  414 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHH
Confidence            5577788888887777766655

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.09  E-value=1e-05  Score=58.79  Aligned_cols=91  Identities=15%  Similarity=0.080  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC-
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD-   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~-   77 (125)
                      ...++.++|.++...|++++|...+++++.+.|..      ..++.++|.++..+|++++|...       +++++++. 
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~-------~~~al~~~~  124 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET-------QEKAFQLIN  124 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHH
Confidence            34578899999999999999999999999886543      34578899999999999999999       55555543 


Q ss_pred             -------CCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           78 -------PSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        78 -------p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                             |....+...++.++...++..++..
T Consensus       125 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (373)
T 1hz4_A          125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA  156 (373)
T ss_dssp             HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence                   3344566677777766665555443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.06  E-value=8e-06  Score=62.35  Aligned_cols=85  Identities=14%  Similarity=0.060  Sum_probs=69.1

Q ss_pred             HhcCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-CCCcHHHHHHHH
Q 033182           18 KLGKFEESIKECTKALEL-----NPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-DPSNNQAKRTIL   88 (125)
Q Consensus        18 ~~~~~~~A~~~~~~al~l-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-~p~~~~~~~~l~   88 (125)
                      ..|+|++|+..+++++.+     +|++   +..+.++|.+|..+|+|++|...+++++.++++.+-- +|+...++..|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357899999999999875     4555   5789999999999999999999999999988877653 355566777888


Q ss_pred             HHHHHHHHHHHHHH
Q 033182           89 RLQPLAEEKLEKMK  102 (125)
Q Consensus        89 ~~~~~~~~~~~~~~  102 (125)
                      .++..+++..++..
T Consensus       390 ~~~~~qg~~~eA~~  403 (433)
T 3qww_A          390 RLYMGLENKAAGEK  403 (433)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHhccCHHHHHH
Confidence            88888887766655

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.04  E-value=1.1e-05  Score=58.77  Aligned_cols=69  Identities=12%  Similarity=0.056  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKL-----GKFEESIKECTKALELNPTY-MKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      ...+|.-+|..|.+.     |+.+.|..+|+++++++|+. ...++..|..++.. |+++.|.+.       ++++++.+
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~-------L~kAL~a~  270 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA-------LDRALAID  270 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH-------HHHHHHCC
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH-------HHHHHcCC
Confidence            678999999999995     99999999999999999975 99999999999884 999999999       99999988


Q ss_pred             CCc
Q 033182           78 PSN   80 (125)
Q Consensus        78 p~~   80 (125)
                      |..
T Consensus       271 p~~  273 (301)
T 3u64_A          271 PES  273 (301)
T ss_dssp             GGG
T ss_pred             CCC
Confidence            763

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.00  E-value=1.7e-05  Score=60.23  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc----hhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKLG---KFEESIKECTKALELNPTYMKALIRRAEAHEKL----EHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      .+.+++++|.+|...|   ++++|+..|+++...+|..+..++++|.+|...    +++++|+.+       |+++.   
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~-------~~~aa---  244 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL-------LEKIA---  244 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH-------HHHHG---
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH-------HHHHc---
Confidence            3457888999999988   899999999999999999999889999998766    688889888       88887   


Q ss_pred             CCcHHHHHHHHHH
Q 033182           78 PSNNQAKRTILRL   90 (125)
Q Consensus        78 p~~~~~~~~l~~~   90 (125)
                      |+++.+...++.+
T Consensus       245 ~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          245 PGYPASWVSLAQL  257 (452)
T ss_dssp             GGSTHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            8888888888887

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.95  E-value=3.4e-05  Score=58.70  Aligned_cols=91  Identities=18%  Similarity=0.075  Sum_probs=72.3

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh-hCCCcHH
Q 033182           12 RGICFLKLGKFEESIKECTKALEL-----NPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE-FDPSNNQ   82 (125)
Q Consensus        12 ~~~~~~~~~~~~~A~~~~~~al~l-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~-l~p~~~~   82 (125)
                      ...-+..+|+|++|+..+++++..     +|++   ...+.++|.+|..+|+|++|...+++++.++++.+- .+|+...
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            344455789999999999999975     3544   678999999999999999999999999999887765 2355555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .+..|+.++..+++..++..
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~  392 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMK  392 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHH
Confidence            77788888888777666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.87  E-value=7e-05  Score=56.78  Aligned_cols=76  Identities=12%  Similarity=0.011  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHH-H--HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-----hHHHHHHhHHHHHHHHHHHHhh
Q 033182            5 RSICHSNRGIC-F--LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-----HFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         5 ~~~~~~~~~~~-~--~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      .+.+++++|.+ +  ...+++++|+..|+++...+  ++.+++++|.+|. .|     ++++|+.+       |+++.  
T Consensus       247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~-------~~~Aa--  314 (452)
T 3e4b_A          247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAH-------FEKAV--  314 (452)
T ss_dssp             STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHH-------HHTTT--
T ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHH-------HHHHh--
Confidence            45667777777 3  35677777777777776543  6777777777777 45     77777777       77777  


Q ss_pred             CCCcHHHHHHHHHHHHH
Q 033182           77 DPSNNQAKRTILRLQPL   93 (125)
Q Consensus        77 ~p~~~~~~~~l~~~~~~   93 (125)
                       |+++.+...++.++..
T Consensus       315 -~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          315 -GREVAADYYLGQIYRR  330 (452)
T ss_dssp             -TTCHHHHHHHHHHHHT
T ss_pred             -CCCHHHHHHHHHHHHC
Confidence             7777777777776643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.86  E-value=0.00032  Score=53.08  Aligned_cols=78  Identities=13%  Similarity=0.064  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182            5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      ++.+++.+|.+|..    .++++.|+..|+++...  .++.+++.+|.+|..    .+++++|+.+       |+++.+.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~-------~~~a~~~  108 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW-------YKKAALK  108 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHHHHC
Confidence            45566667777666    66777777777776654  456677777777776    6677777777       6666553


Q ss_pred             CCCcHHHHHHHHHHHHH
Q 033182           77 DPSNNQAKRTILRLQPL   93 (125)
Q Consensus        77 ~p~~~~~~~~l~~~~~~   93 (125)
                        +++.+...++.++..
T Consensus       109 --~~~~a~~~Lg~~y~~  123 (490)
T 2xm6_A          109 --GLPQAQQNLGVMYHE  123 (490)
T ss_dssp             --TCHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHc
Confidence              455666666665543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.86  E-value=9.1e-05  Score=47.37  Aligned_cols=71  Identities=11%  Similarity=-0.071  Sum_probs=64.1

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182           12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI   87 (125)
Q Consensus        12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l   87 (125)
                      +|.+|...+.++.|+..|+++...  .++.+++++|.+|..    .+++++|+.+       |+++.+.  +++.+...|
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~-------~~~Aa~~--g~~~a~~~L   99 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY-------YSKACGL--NDQDGCLIL   99 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH-------HHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH-------HHHHHcC--CCHHHHHHH
Confidence            888888888899999999999987  689999999999999    8999999999       9988875  788999999


Q ss_pred             HHHHHH
Q 033182           88 LRLQPL   93 (125)
Q Consensus        88 ~~~~~~   93 (125)
                      +.++..
T Consensus       100 g~~y~~  105 (138)
T 1klx_A          100 GYKQYA  105 (138)
T ss_dssp             HHHHHH
T ss_pred             HHHHHC
Confidence            998865

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=4.4e-05  Score=56.25  Aligned_cols=67  Identities=10%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      ....++.++|.+|...|+|.+|+..+.+++..      .|....++...|.+|..+|+|++|...       +++++...
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~al~~~  205 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKAS-------LTAARTAA  205 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHH-------HHHHHHHh
Confidence            45678999999999999999999999998766      345578999999999999999999999       66555543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.78  E-value=0.00029  Score=51.63  Aligned_cols=78  Identities=10%  Similarity=0.067  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC----
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNP--TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS----   79 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~----   79 (125)
                      ...+..+|.++...|++++|++.+.+.+..+|  .+.+++...+.++..+|+.+.|.+.       ++++.+.+|+    
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~-------l~~~~~~~~d~~~~  172 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI-------FDNYTNAIEDTVSG  172 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSCHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCcccccc
Confidence            34567899999999999999999999999997  8999999999999999999999999       9999999984    


Q ss_pred             cHHHHHHHHHH
Q 033182           80 NNQAKRTILRL   90 (125)
Q Consensus        80 ~~~~~~~l~~~   90 (125)
                      +..+...+...
T Consensus       173 ~d~~l~~Laea  183 (310)
T 3mv2_B          173 DNEMILNLAES  183 (310)
T ss_dssp             HHHHHHHHHHH
T ss_pred             chHHHHHHHHH
Confidence            34444555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.78  E-value=0.00011  Score=44.41  Aligned_cols=60  Identities=18%  Similarity=0.152  Sum_probs=54.3

Q ss_pred             CCCChHHHHHHHHHHHHchh---HHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           36 NPTYMKALIRRAEAHEKLEH---FEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        36 ~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +|+++..+..+|.+++..++   .++|...       ++++++++|+++.+...++.++-..++..++..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~-------l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~   64 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLL-------LEQALQLEPYNEAALSLIANDHFISFRFQEAID   64 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHH-------HHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            68999999999999987776   7999999       999999999999999999999988887777665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.71  E-value=0.00017  Score=62.20  Aligned_cols=63  Identities=16%  Similarity=0.133  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      .+.+|+++|.++...|++++|+..|.++     +++..|.+.|.++.+.|+|++|+++       |..+.+.++.
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIey-------L~mArk~~~e 1166 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY-------LQMARKKARE 1166 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhccc
Confidence            4788999999999999999999999886     8999999999999999999999999       8888887744

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.71  E-value=0.00033  Score=53.74  Aligned_cols=79  Identities=13%  Similarity=0.144  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH------------------------------HHHHHHHchhH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR------------------------------RAEAHEKLEHF   56 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~------------------------------~~~~~~~~~~~   56 (125)
                      ..|.++|.|+.++|+|++|++.++++     .++++|..                              +...|.+.|++
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF  223 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCH
Confidence            45788999999999999999999998     24444444                              33566777777


Q ss_pred             HHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           57 EEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        57 ~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      ++|+..       ++.++.++|.+..+...++-++...+-.
T Consensus       224 eEai~l-------Le~aL~le~ah~~~ftel~il~~ky~p~  257 (449)
T 1b89_A          224 EELITM-------LEAALGLERAHMGMFTELAILYSKFKPQ  257 (449)
T ss_dssp             HHHHHH-------HHHHTTSTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHH-------HHHHhCCcHHHHHHHHHHHHHHHhcCHH
Confidence            777777       9999999999999888888777555433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.68  E-value=0.00021  Score=43.50  Aligned_cols=44  Identities=16%  Similarity=0.139  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA   47 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~   47 (125)
                      .++.++.++|.++.++|+++.|+..+++++.++|++..+..+++
T Consensus        44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            46788999999999999999999999999999999999988887

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.66  E-value=0.00042  Score=50.51  Aligned_cols=66  Identities=9%  Similarity=0.038  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHc-----hhHHHHHHhHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHH
Q 033182           21 KFEESIKECTKALELNPT--YMKALIRRAEAHEKL-----EHFEEAIAGIQDLMIVMKKILEFDPSN-NQAKRTILRLQP   92 (125)
Q Consensus        21 ~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~a~~l~p~~-~~~~~~l~~~~~   92 (125)
                      ....|....++++++||+  +..+|..+|..|...     |+.+.|..+       |+++++++|+. ..++...++...
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~-------ferAL~LnP~~~id~~v~YA~~l~  250 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA-------FEHLTRYCSAHDPDHHITYADALC  250 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH-------HHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH-------HHHHHHhCCCCCchHHHHHHHHHH
Confidence            457899999999999999  577999999999995     999999999       99999999974 898988888764


Q ss_pred             H
Q 033182           93 L   93 (125)
Q Consensus        93 ~   93 (125)
                      .
T Consensus       251 ~  251 (301)
T 3u64_A          251 I  251 (301)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.58  E-value=0.00035  Score=51.22  Aligned_cols=69  Identities=10%  Similarity=-0.044  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALEL----------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE   75 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~   75 (125)
                      +..++|   +++++|+|++|...++.+++.          +|+++.++.|+..+...+|+  +|.+.       ++++.+
T Consensus       214 ~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l-------~~qL~~  281 (310)
T 3mv2_B          214 QLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDL-------TNQLVK  281 (310)
T ss_dssp             HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHH-------HHHHHH
T ss_pred             HHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHH-------HHHHHH
Confidence            345555   899999999999999988887          58999999999999999998  88889       999999


Q ss_pred             hCCCcHHHHHH
Q 033182           76 FDPSNNQAKRT   86 (125)
Q Consensus        76 l~p~~~~~~~~   86 (125)
                      .+|+++-+...
T Consensus       282 ~~P~hp~i~d~  292 (310)
T 3mv2_B          282 LDHEHAFIKHH  292 (310)
T ss_dssp             TTCCCHHHHHH
T ss_pred             hCCCChHHHHH
Confidence            99999886543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.56  E-value=0.00035  Score=46.17  Aligned_cols=46  Identities=13%  Similarity=0.041  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA   49 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~   49 (125)
                      .+..++|++|..|+++++|++|.+.++++++.+|+|..+...+-.+
T Consensus        69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            5688999999999999999999999999999999999887665544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.50  E-value=0.0015  Score=49.00  Aligned_cols=86  Identities=9%  Similarity=0.068  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHH-----------------------------------
Q 033182            9 HSNRGICFLKLG---KFEESIKECTKALELNPTYMKALIRRAEAH-----------------------------------   50 (125)
Q Consensus         9 ~~~~~~~~~~~~---~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-----------------------------------   50 (125)
                      ++-+|..++..+   ++.+|+..|+++++++|+++.++..++.+|                                   
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~  278 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI  278 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence            445555555543   357788888888888888877776555544                                   


Q ss_pred             ---------HHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           51 ---------EKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        51 ---------~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                               ...|++++|+..       +++++.++|+ ..++..++.++...++..++..
T Consensus       279 ~~~alal~~l~~gd~d~A~~~-------l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e  331 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQA-------INTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD  331 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHH-------HHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence                     335667777777       9999999876 5567778888777776665554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.46  E-value=0.00095  Score=44.68  Aligned_cols=80  Identities=14%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CC----------------------ChHHHHHHHHHHHHchhHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELN---PT----------------------YMKALIRRAEAHEKLEHFEEA   59 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~---p~----------------------~~~~~~~~~~~~~~~~~~~~A   59 (125)
                      ...++...|..++..++|..|...|++++...   ++                      ..+..|..+.||.+++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            45578899999999999999999999987553   11                      126889999999999999999


Q ss_pred             HHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 033182           60 IAGIQDLMIVMKKILEFDPSNNQAKRTILRLQP   92 (125)
Q Consensus        60 ~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~   92 (125)
                      +..       ++.+-. --..+.+...|++++.
T Consensus       142 i~~-------Le~Ip~-k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          142 IAI-------LDGIPS-RQRTPKINMLLANLYK  166 (167)
T ss_dssp             HHH-------HHTSCG-GGCCHHHHHHHHHHCC
T ss_pred             HHH-------HhcCCc-hhcCHHHHHHHHHHhc
Confidence            988       653322 2246778888887753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.45  E-value=0.001  Score=57.55  Aligned_cols=85  Identities=13%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------------------------CChHHHHHHHHHHHHchhHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNP-------------------------TYMKALIRRAEAHEKLEHFEEAI   60 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-------------------------~~~~~~~~~~~~~~~~~~~~~A~   60 (125)
                      +..|..++.++.++|++++|++.++++...++                         .+++.+..++..|...|.|++|+
T Consensus      1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A         1221 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence            45688888999999999999998888843332                         13444556677788888888888


Q ss_pred             HhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182           61 AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK   97 (125)
Q Consensus        61 ~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~   97 (125)
                      ..       ++.++.++|.+......++.++....-.
T Consensus      1301 ~L-------lE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A         1301 TM-------LEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred             HH-------HHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence            88       9999999999988888888777555433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.40  E-value=0.00013  Score=56.04  Aligned_cols=73  Identities=11%  Similarity=0.057  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      ...|.++|.++...|+|++|...|.++        ..|.++|.|+.++|+|++|++.       ++++     +++.++.
T Consensus       122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea-------~~KA-----~~~~~Wk  181 (449)
T 1b89_A          122 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG-------ARKA-----NSTRTWK  181 (449)
T ss_dssp             ---------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHH-------HHHH-----TCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHH-------HHHc-----CCchhHH
Confidence            358999999999999999999999877        5789999999999999999999       8877     3455555


Q ss_pred             HHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKL   98 (125)
Q Consensus        86 ~l~~~~~~~~~~~   98 (125)
                      ....+....++.+
T Consensus       182 ~v~~aCv~~~ef~  194 (449)
T 1b89_A          182 EVCFACVDGKEFR  194 (449)
T ss_dssp             HHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCcHH
Confidence            5555544444333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.33  E-value=0.0022  Score=48.02  Aligned_cols=78  Identities=14%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .....+...++.++...|++.+++..+..++..+|-+-..|..+..++...|+..+|+..|++....+..-+-++|+.
T Consensus       168 ~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~  245 (388)
T 2ff4_A          168 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  245 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            345566778888999999999999999999999999999999999999999999999999888888888888888873

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.16  E-value=0.0011  Score=44.35  Aligned_cols=95  Identities=11%  Similarity=0.052  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTY---------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF--   76 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l--   76 (125)
                      ++..-.......+.|+.|+..++.++.+..++         ......+|.++...++|..|...|..++.+.+.+.+.  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34445556667899999999999988775433         3488999999999999999999966666654422211  


Q ss_pred             ----------------CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           77 ----------------DPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        77 ----------------~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                                      .+.+.+..+.+..|+..+++.+++..
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~  143 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA  143 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence                            12234788999999999988876654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0025  Score=46.71  Aligned_cols=87  Identities=13%  Similarity=0.095  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-----
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELN------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-----   76 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-----   76 (125)
                      +..+++.++...|+++.|+..+++++...      +.....+.++|.++...|+|++|...       ++.++..     
T Consensus        97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------l~~~~~~~~~~~  169 (434)
T 4b4t_Q           97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLAL-------INDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHTTSS
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHH-------HHHHHHHHHhcc
Confidence            34444445444555555555555554432      23467889999999999999999999       5554443     


Q ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182           77 -DPSNNQAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        77 -~p~~~~~~~~l~~~~~~~~~~~~~~  101 (125)
                       .|...+++..++.++...++...+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~  195 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSK  195 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHH
Confidence             2334557777777777666554443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.004  Score=50.64  Aligned_cols=55  Identities=20%  Similarity=0.239  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG   62 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~   62 (125)
                      ++.--+.-.+..|+|+-|+....+++..-|....+|+.++.||..+|+|+.|+-.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt  393 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA  393 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence            3444455556689999999999999999999999999999999999999999987

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.89  E-value=0.014  Score=45.29  Aligned_cols=81  Identities=11%  Similarity=-0.031  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      .++..+|....-...+..|..+|.+|..+.|++...|..+|......|+.-+|+-+       |.+++.-..-.+.+..+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~-------y~rsl~~~~Pf~~a~~n  225 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY-------YCRSIAVKFPFPAASTN  225 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH-------HHHHHSSSBCCHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH-------HHHHHhcCCCChhHHHH
Confidence            36677888888888899999999999999999999999999999999999999999       88888776667888888


Q ss_pred             HHHHHHHH
Q 033182           87 ILRLQPLA   94 (125)
Q Consensus        87 l~~~~~~~   94 (125)
                      |..+....
T Consensus       226 L~~~f~~~  233 (497)
T 1ya0_A          226 LQKALSKA  233 (497)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.87  E-value=0.0061  Score=38.94  Aligned_cols=46  Identities=13%  Similarity=0.041  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA   49 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~   49 (125)
                      .+-.+.|.+|..++++|+|..|.+.++.+++.+|+|..+......+
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5678999999999999999999999999999999998886655443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.77  E-value=0.019  Score=41.19  Aligned_cols=67  Identities=13%  Similarity=0.097  Sum_probs=60.0

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182           15 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL   88 (125)
Q Consensus        15 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~   88 (125)
                      ..++.|+..+|+......++.+|.++.....+.+.++-.|+|+.|...       ++.+.+++|+.......+.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~Q-------L~~~a~l~p~~~~~a~~yr   72 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQ-------LMQSIKLFPEYLPGASQLR   72 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCGGGHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHhCchhhHHHHHHH
Confidence            355789999999999999999999999999999999999999999999       9999999999776554433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.52  E-value=0.016  Score=37.38  Aligned_cols=46  Identities=15%  Similarity=0.129  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA   49 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~   49 (125)
                      .+-.+++-+|..+.++|+|+.|.+..+.+++..|+|..+......+
T Consensus        76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999999998886655444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.43  E-value=0.02  Score=46.01  Aligned_cols=67  Identities=12%  Similarity=-0.123  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESI-KECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIV   69 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   69 (125)
                      |..+.+|+..+......|+.++|. ..+++++...|.+...|+..+......|+++.|...+++++..
T Consensus       340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            456788999999988899999997 9999999999999999999999999999999999994444443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.28  E-value=0.014  Score=38.12  Aligned_cols=46  Identities=15%  Similarity=0.129  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA   49 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~   49 (125)
                      .+-.+.|.+|..+.++|+|.+|.+..+.+++.+|+|..+......+
T Consensus        75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3567899999999999999999999999999999998876554433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.93  E-value=0.039  Score=44.32  Aligned_cols=78  Identities=6%  Similarity=-0.087  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh---HHHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH---FEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|.+...|........+.+.+..+-..|++++...|.....|......-...++   ++.+...       |++++...|
T Consensus        62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l-------feRal~~~~  134 (679)
T 4e6h_A           62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV-------LARCLSKEL  134 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH-------HHHHTCSSS
T ss_pred             CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH-------HHHHHHhcC
Confidence            477888999999999999999999999999999999999999999999999999   9999988       999999884


Q ss_pred             --CcHHHHHH
Q 033182           79 --SNNQAKRT   86 (125)
Q Consensus        79 --~~~~~~~~   86 (125)
                        .+.+.+..
T Consensus       135 ~~~sv~LW~~  144 (679)
T 4e6h_A          135 GNNDLSLWLS  144 (679)
T ss_dssp             CCCCHHHHHH
T ss_pred             CCCCHHHHHH
Confidence              34444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.57  E-value=0.11  Score=34.37  Aligned_cols=69  Identities=7%  Similarity=-0.066  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .|.+-+. +...++.+.|-..|..++.+...+++.|...|..-..+|+.+.|...       +.+++.+.|...+..
T Consensus        63 LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkI-------Lg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           63 IQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQL-------LQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTCBCHHHH
T ss_pred             HHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHH-------HHHHhccCCCcHHHH
Confidence            3444443 35678999999999999999889999999999999999999999999       999999999876643

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=94.66  E-value=0.25  Score=29.66  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      +-.+-+++..+...|+|++|+.+.++++..+..|.++. .+..+.
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmklt-qs~qa~   58 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLT-ESEQAH   58 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHH
Confidence            45677899999999999999999999999999999987 444433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.40  E-value=0.77  Score=35.28  Aligned_cols=89  Identities=7%  Similarity=-0.009  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--CCCcH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELN-PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF--DPSNN   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l--~p~~~   81 (125)
                      +...|..+-.+|.+.|++++|...+++....+ +.+...|..+-.++.+.|+.++|...       |+...+.  .|+ .
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l-------~~~M~~~G~~Pd-~  175 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV-------DAHMVESEVVPE-E  175 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTCCCC-H
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCC-H
Confidence            34567888889999999999999999988775 33688888999999999999999999       8887764  354 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~  101 (125)
                      .++..+-..+...++.+++.
T Consensus       176 ~ty~~Li~~~~~~g~~d~A~  195 (501)
T 4g26_A          176 PELAALLKVSMDTKNADKVY  195 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhhCCCHHHHH
Confidence            45666666655555544443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.33  E-value=0.21  Score=38.27  Aligned_cols=59  Identities=8%  Similarity=-0.178  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182           23 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR   89 (125)
Q Consensus        23 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~   89 (125)
                      ......|++++...|..+..|+..+..+...|+.+.|...       |++++.. |.+...+.....
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i-------~erAi~~-P~~~~l~~~y~~  254 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKV-------VERGIEM-SDGMFLSLYYGL  254 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH-CCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhC-CCcHHHHHHHHh
Confidence            4566799999999999999999999999999999999999       9999999 988766654443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.59  E-value=1.5  Score=33.52  Aligned_cols=77  Identities=13%  Similarity=-0.081  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ..+|...+....+.++.+.|...|+++ ...+.....|...+..-...+ +.+.|...       |+.+++.-|+.++.+
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~i-------fe~al~~~~~~~~~~  357 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNI-------FSSGLLKHPDSTLLK  357 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHH-------HHHHHHHCCCCHHHH
Confidence            356777777777888899999999999 443345566666666666666 48888888       999998888887755


Q ss_pred             HHHHHH
Q 033182           85 RTILRL   90 (125)
Q Consensus        85 ~~l~~~   90 (125)
                      ....+.
T Consensus       358 ~~yid~  363 (493)
T 2uy1_A          358 EEFFLF  363 (493)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=93.36  E-value=0.66  Score=27.11  Aligned_cols=40  Identities=18%  Similarity=0.201  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182           42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus        42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      .+...|.-.-..|+|++|+..|+.|+.+|..++...|+..
T Consensus        21 ~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~   60 (83)
T 2w2u_A           21 KYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGS   60 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSS
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            3445556667889999999999999999999999877644

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.30  E-value=0.41  Score=31.60  Aligned_cols=88  Identities=11%  Similarity=0.012  Sum_probs=64.3

Q ss_pred             ChhHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182            1 MAELRSICHSNRGICFLKLGKF------EESIKECTKALELNPT--------YMKALIRRAEAHEKLEHFEEAIAGIQDL   66 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~al~l~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~   66 (125)
                      |.|.+...|.+......+.|+.      +.-...|++|+..-|.        +...|.+.|.. ...++.++|.+.    
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v----   82 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDY----   82 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHH----
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHH----
Confidence            3567778888888888888888      8888999999987663        45667777755 566888888888    


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 033182           67 MIVMKKILEFDPSNNQAKRTILRLQPLAEE   96 (125)
Q Consensus        67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~   96 (125)
                         |+.++.++.....++...+....+.+.
T Consensus        83 ---y~~a~~~hKkFAKiwi~~AqFEiRqgn  109 (161)
T 4h7y_A           83 ---FQMARANCKKFAFVHISFAQFELSQGN  109 (161)
T ss_dssp             ---HHHHHHHCTTBHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHHhHHHHHHHHHHHHHHHHccc
Confidence               999988877776666655555544443

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=92.63  E-value=0.95  Score=26.95  Aligned_cols=41  Identities=15%  Similarity=0.277  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      .+...|.-.-..|+|++|+..|..++.+|..+++..|+...
T Consensus        17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~   57 (93)
T 1wfd_A           17 AVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSK   57 (93)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence            34556666678899999999999999999999998877554

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=92.47  E-value=0.92  Score=26.42  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           43 LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        43 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +...|.-.-..|+|++|+..|+.++.+|..+++..|+...
T Consensus        14 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~   53 (83)
T 2v6y_A           14 YAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVA   53 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence            3445556678899999999999999999999998876543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=92.04  E-value=1.4  Score=27.46  Aligned_cols=42  Identities=19%  Similarity=0.381  Sum_probs=32.7

Q ss_pred             HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182           44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus        44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      ...|.-.-..|+|++|+..|..++.+|..+++..|.+.....
T Consensus        22 v~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~   63 (117)
T 2cpt_A           22 ASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQ   63 (117)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence            444445567799999999999999999999998866655433

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=91.79  E-value=1.2  Score=26.18  Aligned_cols=41  Identities=15%  Similarity=0.273  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      .+...|.-.-..|+|++|+..|+.|+.+|..++...|+...
T Consensus        18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~   58 (86)
T 4a5x_A           18 TVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTK   58 (86)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence            34455566678899999999999999999999998887543

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=90.82  E-value=1.5  Score=25.48  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           43 LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        43 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +...|.-.-..|+|++|+..|..++.+|..+++..|+...
T Consensus        16 l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~   55 (85)
T 2v6x_A           16 LVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKS   55 (85)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            3445555677899999999999999999999998876443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.30  E-value=3.1  Score=28.32  Aligned_cols=70  Identities=13%  Similarity=0.098  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH--hc---------------CCCChH-HHHHHHHHHHHchhHHHHHHhHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKAL--EL---------------NPTYMK-ALIRRAEAHEKLEHFEEAIAGIQDLMI   68 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al--~l---------------~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~   68 (125)
                      +..+-.+.||.+..+|..|+...+..+  ..               ||.+-+ .+.-+|..++..|.-++|+.+      
T Consensus        63 Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y------  136 (242)
T 3kae_A           63 TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGH------  136 (242)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhH------
Confidence            445567899999999999999999998  22               234444 455689999999999999999      


Q ss_pred             HHHHHHhhCCCcHHH
Q 033182           69 VMKKILEFDPSNNQA   83 (125)
Q Consensus        69 ~~~~a~~l~p~~~~~   83 (125)
                       +.+.....|-.+.+
T Consensus       137 -~~~Sf~~~~lf~~v  150 (242)
T 3kae_A          137 -YVRSFGKSFLFSPV  150 (242)
T ss_dssp             -HHHHHHHCCCHHHH
T ss_pred             -hhhhcCCccccchH
Confidence             77776666654443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.33  E-value=0.92  Score=35.44  Aligned_cols=70  Identities=10%  Similarity=0.004  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP-----TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ..++++.-+-..|...+.|+.|....+++.--.+     .....+|..|.++.-+++|.+|..+       +..|++..|
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~-------L~~A~rkap  301 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEY-------IIAAIRKAP  301 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHTSSCS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCC
Confidence            4567788888889999999999999998852211     1256777889999999999999999       999999877


Q ss_pred             Cc
Q 033182           79 SN   80 (125)
Q Consensus        79 ~~   80 (125)
                      .+
T Consensus       302 ~~  303 (523)
T 4b4t_S          302 HN  303 (523)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.55  E-value=3.3  Score=31.70  Aligned_cols=77  Identities=9%  Similarity=0.060  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--CCCcH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF--DPSNN   81 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l--~p~~~   81 (125)
                      +...|..+-.+|.+.|++++|...++.....+- .+...|..+-.++.+.|+.++|...       +++..+.  .|+..
T Consensus       139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~l-------l~~Mr~~g~~ps~~  211 (501)
T 4g26_A          139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT-------LQRLRDLVRQVSKS  211 (501)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHTSSBCHH
T ss_pred             ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHH-------HHHHHHhCCCcCHH
Confidence            345677888889999999999999999888763 3578889999999999999999999       8877654  45533


Q ss_pred             HHHHHHHH
Q 033182           82 QAKRTILR   89 (125)
Q Consensus        82 ~~~~~l~~   89 (125)
                       ++..+..
T Consensus       212 -T~~~l~~  218 (501)
T 4g26_A          212 -TFDMIEE  218 (501)
T ss_dssp             -HHHHHHH
T ss_pred             -HHHHHHH
Confidence             3334433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=85.99  E-value=8.6  Score=28.36  Aligned_cols=84  Identities=18%  Similarity=0.242  Sum_probs=61.7

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcC--C------C--C------------hHHHHHHHHHHHHchhHHHHHHhHHHHHH
Q 033182           11 NRGICFLKLGKFEESIKECTKALELN--P------T--Y------------MKALIRRAEAHEKLEHFEEAIAGIQDLMI   68 (125)
Q Consensus        11 ~~~~~~~~~~~~~~A~~~~~~al~l~--p------~--~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~   68 (125)
                      ..|......|+.+.|...+++++.+=  |      .  +            ..+...++.++...|++.+|+..      
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~------  193 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE------  193 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH------
Confidence            33433444678999999999998873  1      1  1            12444577888899999999999      


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182           69 VMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        69 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  101 (125)
                       +.+++..+|-+...+..+-.++...++..++.
T Consensus       194 -l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al  225 (388)
T 2ff4_A          194 -LEALTFEHPYREPLWTQLITAYYLSDRQSDAL  225 (388)
T ss_dssp             -HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             -HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence             99999999999988888877776666554443

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=84.72  E-value=4.3  Score=27.44  Aligned_cols=39  Identities=13%  Similarity=-0.027  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK   41 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~   41 (125)
                      ....+..|-+|..++..++|.+|..++..|+..-|....
T Consensus        11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~   49 (203)
T 3t5x_A           11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ   49 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence            356788999999999999999999999999998776543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=84.71  E-value=6.8  Score=26.10  Aligned_cols=46  Identities=15%  Similarity=0.013  Sum_probs=38.7

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHH
Q 033182           14 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ   64 (125)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~   64 (125)
                      ...++.|+++.|...++..     ++...|..+|..-+..|+++-|..+|+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~   58 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQ   58 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3446789999998887765     678899999999999999999999933

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=82.76  E-value=4.1  Score=32.52  Aligned_cols=51  Identities=16%  Similarity=0.100  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA   59 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A   59 (125)
                      ...++...+..|+|..|....+.++..+|++..+...++.+|.++|.-.+.
T Consensus       452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~  502 (658)
T 2cfu_A          452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN  502 (658)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            456777778899999999999999999999999999999999998865443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=81.92  E-value=9.4  Score=29.92  Aligned_cols=44  Identities=16%  Similarity=0.122  Sum_probs=32.6

Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH
Q 033182           17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD   65 (125)
Q Consensus        17 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~   65 (125)
                      .+.|++++|.+.+     ...++...|..+|..+.+.++++.|...|++
T Consensus       663 l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~  706 (814)
T 3mkq_A          663 LKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTN  706 (814)
T ss_dssp             HHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4456666655543     2235688999999999999999999999443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.79  E-value=7.6  Score=29.09  Aligned_cols=61  Identities=8%  Similarity=0.119  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc----C-C-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALEL----N-P-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIV   69 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l----~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   69 (125)
                      -.++|..|+..|+|.+|...+.+...-    | + .-.+.+..-..+|..++++..+...++.+.-+
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            347899999999999999988887653    2 1 23678888899999999999999995555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	5e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.003
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.002
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	6e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	0.004

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.8 bits (110), Expect = 5e-08
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 1   MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
           + E + + H+ +    +  G+    I E       +P       +   A+   +   +A+
Sbjct: 62  LVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDAL 121

Query: 61  AGIQDLMIVMKKILEFDPSN--NQAKRTILRLQPL 93
              + +   +   L  DP          ILR QPL
Sbjct: 122 GAYRRVKTTLADDLGIDPGPTLRALNERILRQQPL 156

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 7e-08
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
             +N      + G  EE+++   KALE+ P +  A    A   ++    +EA+       
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM------ 360

Query: 68  IVMKKILEFDPSNNQA 83
              K+ +   P+   A
Sbjct: 361 -HYKEAIRISPTFADA 375

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 9e-07
 Identities = 13/63 (20%), Positives = 24/63 (38%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
            H N    + + G  + +I    +A+EL P +  A    A A ++     EA       +
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

Query: 68  IVM 70
            + 
Sbjct: 299 RLC 301

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 9e-07
 Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 7/73 (9%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
                 + G FE + + C +     P     L+  +  H +    + +           
Sbjct: 4  ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH-------FS 56

Query: 71 KKILEFDPSNNQA 83
             ++ +P   +A
Sbjct: 57 TLAIKQNPLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 1e-06
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 54
           HSN      + GK +E++    +A+ ++PT+  A        ++++
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 3e-05
 Identities = 6/48 (12%), Positives = 15/48 (31%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 56
                   +  + + S    T A++ NP   +A       +++    
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
           ++  SN G  F   G+   +I    KA+ L+P ++ A I      ++   F+ A+A
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
           + N G    +   F+ ++    +AL L+P +       A  + +    + AI        
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID------- 258

Query: 69  VMKKILEFDPSNNQA 83
             ++ +E  P    A
Sbjct: 259 TYRRAIELQPHFPDA 273

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.9 bits (103), Expect = 8e-07
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76
          L  G+ +++++   +A++ +P          E       FE A          + + ++ 
Sbjct: 7  LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE-------QLMQSIKL 59

Query: 77 DPSNNQAKRTILRL 90
           P        +  L
Sbjct: 60 FPEYLPGASQLRHL 73

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 8/57 (14%), Positives = 22/57 (38%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
           S+        G FE + ++  ++++L P Y+    +     +  +  ++   G   
Sbjct: 33 RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 89

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 6e-06
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
            G+  L+ G    ++     A++ +P +M+A         + E    AI+ ++
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 77

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 8/99 (8%)

Query: 5   RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
                         L    ES KE  +    N   +  +I    A + L + +E +    
Sbjct: 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ--- 297

Query: 65  DLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
                   +   DP         LR + L E  + KM+ 
Sbjct: 298 ----YFSTLKAVDPMRAAYLDD-LRSKFLLENSVLKMEY 331

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 9  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAI 60
          +        +  + E + K    A+ELN         R    + L+    E +
Sbjct: 46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 98

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 7/117 (5%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
           C  + G       +  ++      A +L P+  +   + A            I       
Sbjct: 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF------ 207

Query: 68  IVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKLGNDFLLRFHFLLIKK 124
               + +        A   + +    A E  +++K +          ++FH  +   
Sbjct: 208 -YYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLS 263

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.003
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 9/78 (11%)

Query: 6   SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
            +  S  GI   K       +K  + +      +   L+   +         +A +    
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAES---- 173

Query: 66  LMIVMKKILEFDPSNNQA 83
                +   +  PSN Q 
Sbjct: 174 ---YYRHAAQLVPSNGQP 188

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 7/100 (7%)

Query: 4   LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
           +   C  N G C LK+  ++ ++  C +ALE++P+  KAL RRA+  + L+ +++A+A  
Sbjct: 75  VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA-- 132

Query: 64  QDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
                 +KK  E  P +   +  +L+++   + + +K K 
Sbjct: 133 -----DLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 167

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 8   CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 59
               RG   L + +FE +  +  K LE+NP    A ++     +K +   E 
Sbjct: 100 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 3   ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
                   N  +C+LKL ++ ++++ C KAL L+    K L RR EA   +  FE A   
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 63  IQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKE 103
            +       K+LE +P N  A+  I   Q  A+E  E+ + 
Sbjct: 121 FE-------KVLEVNPQNKAARLQIFMCQKKAKEHNERDRR 154

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 6e-04
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 9   HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
             N G  +  L    E+ K  T+++  +     A  +R   + + E ++ AI        
Sbjct: 39  CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK------- 91

Query: 69  VMKKILEFDPSNNQAKRTILRLQ 91
            +K+ L     N      IL LQ
Sbjct: 92  DLKEALIQLRGNQLIDYKILGLQ 114

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 7   ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66
           I + NR + +L+   +  ++ + T+A+EL+  Y+K   RRA ++  L  F  A+      
Sbjct: 45  IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR----- 99

Query: 67  MIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97
               + +++  P +  AK        + ++K
Sbjct: 100 --DYETVVKVKPHDKDAKMKYQECNKIVKQK 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.66
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.62
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.61
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.57
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.53
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.52
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.49
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.45
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.41
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.36
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.35
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.33
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.33
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.32
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.31
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.28
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.25
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.22
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.13
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.13
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.07
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	99.02
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.9
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.8
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.66
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.65
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.65
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.51
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.27
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.27
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.14
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.11
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.97
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.85
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.81
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.64
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.04
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.7
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	96.42
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.04
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	93.31
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	91.78
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.29
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	86.33
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	80.24

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=4e-17  Score=108.01  Aligned_cols=93  Identities=28%  Similarity=0.555  Sum_probs=87.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|....+|.|+|.||+++|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..       |+++++++|++.
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~-------~~~al~l~p~n~  145 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD-------LKKAQEIAPEDK  145 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHH-------HHHHHHhCCCCH
Confidence            5778899999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~  101 (125)
                      .+...+..+...+....+.+
T Consensus       146 ~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         146 AIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999988887666554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.72  E-value=2.2e-16  Score=104.51  Aligned_cols=93  Identities=32%  Similarity=0.515  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +....+|.|+|.||.++|+|.+|+.++++++.++|.+.++++++|.++..+|+|++|+.+       |+++++++|+++.
T Consensus        61 ~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~-------~~~al~l~P~n~~  133 (168)
T d1kt1a1          61 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD-------FEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHSCTTCHH
T ss_pred             hhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCHH
Confidence            456788999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +...+..+...+.+..+..+
T Consensus       134 ~~~~l~~~~~~~~~~~e~~k  153 (168)
T d1kt1a1         134 ARLQIFMCQKKAKEHNERDR  153 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHH
Confidence            99999999888876655443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.71  E-value=1e-16  Score=104.77  Aligned_cols=88  Identities=20%  Similarity=0.317  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +....++.|+|.||+++|+|.+|+.+|++++.++|.++++|+++|.++..+|++++|+..       |+++++++|++.+
T Consensus        64 ~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~-------~~~al~l~P~n~~  136 (153)
T d2fbna1          64 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN-------LYKAASLNPNNLD  136 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHSTTCHH
T ss_pred             hHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHH-------HHHHHHhCCCCHH
Confidence            456678999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEK   97 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~   97 (125)
                      +...+..+...+++.
T Consensus       137 ~~~~l~~~~~kl~~~  151 (153)
T d2fbna1         137 IRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988877654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.3e-16  Score=104.79  Aligned_cols=93  Identities=39%  Similarity=0.562  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +....+|.|+|.||+++|+|++|+.++++++.++|+++.+++++|.++..+|+|++|+..       |+++++++|+++.
T Consensus        59 ~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~-------~~~al~l~P~n~~  131 (170)
T d1p5qa1          59 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD-------FQKVLQLYPNNKA  131 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCSSCHH
T ss_pred             hhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHH-------HHHHHHhCCCCHH
Confidence            456778999999999999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +...+..+...+.+....++
T Consensus       132 ~~~~l~~~~~~~~~~~~~e~  151 (170)
T d1p5qa1         132 AKTQLAVCQQRIRRQLAREK  151 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999888877665544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.2e-16  Score=98.97  Aligned_cols=83  Identities=27%  Similarity=0.408  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|.++|.+|.++|++++|+..+++++.++|+++.+|+++|.++..+|++++|+..       |+++++++|+++
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~-------~~~a~~~~p~~~  105 (117)
T d1elwa_          33 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT-------YEEGLKHEANNP  105 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTCTTCH
T ss_pred             CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCCH
Confidence            5778889999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHH
Q 033182           82 QAKRTILRLQ   91 (125)
Q Consensus        82 ~~~~~l~~~~   91 (125)
                      .+...+..+.
T Consensus       106 ~~~~~l~~l~  115 (117)
T d1elwa_         106 QLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988888765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.3e-15  Score=104.86  Aligned_cols=94  Identities=17%  Similarity=0.171  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      ++.++.+|+++|.+|.+.|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..       |+++++++|++.
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~  105 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA-------FDSVLELDPTYN  105 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCT
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh-------hhHHHHHHhhhh
Confidence            4678889999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++..++.++...++...+..
T Consensus       106 ~a~~~lg~~~~~~g~~~~A~~  126 (259)
T d1xnfa_         106 YAHLNRGIALYYGGRDKLAQD  126 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHH
Confidence            999999999988877665554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.63  E-value=5.3e-15  Score=91.88  Aligned_cols=89  Identities=13%  Similarity=0.116  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      ..++++|.++++.|++.+|+..+++++..+|+++.+|+.+|.++...|++++|+..       |+++++++|++.+++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~~a~~~   89 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA-------LNHARMLDPKDIAVHAA   89 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcc-------cccccccccccccchHH
Confidence            34678999999999999999999999999999999999999999999999999999       99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           87 ILRLQPLAEEKLEKMK  102 (125)
Q Consensus        87 l~~~~~~~~~~~~~~~  102 (125)
                      ++.++...++..++..
T Consensus        90 la~~y~~~g~~~~A~~  105 (112)
T d1hxia_          90 LAVSHTNEHNANAALA  105 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHH
Confidence            9999999988876654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.9e-15  Score=97.21  Aligned_cols=88  Identities=22%  Similarity=0.429  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.+++.+|++++|+.+|+++++++|++..+|+++|.++..+|++++|+.+       ++++++++|++.
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~-------~~~a~~~~p~~~  112 (159)
T d1a17a_          40 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD-------YETVVKVKPHDK  112 (159)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTCH
T ss_pred             chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCCCH
Confidence            5778889999999999999999999999999999999999999999999999999999999       999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEE   96 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~   96 (125)
                      .+...+..+....++
T Consensus       113 ~~~~~l~~~~~~~~~  127 (159)
T d1a17a_         113 DAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988888777655443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.4e-15  Score=99.44  Aligned_cols=90  Identities=21%  Similarity=0.159  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      +.-+.+.|..+++.|+|++|+..|++++.++|.++.+|+++|.+|..+|+|++|+..       |+++++++|++..++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~-------~~~al~l~p~~~~a~~   76 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD-------CRRALELDGQSVKAHF   76 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHTTSCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHH-------HHHHHHhCCCcHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKLEKMK  102 (125)
Q Consensus        86 ~l~~~~~~~~~~~~~~~  102 (125)
                      .++.++..+++..++..
T Consensus        77 ~lg~~~~~l~~~~~A~~   93 (201)
T d2c2la1          77 FLGQCQLEMESYDEAIA   93 (201)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHH
Confidence            99999998887776654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3e-14  Score=88.95  Aligned_cols=89  Identities=15%  Similarity=0.187  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT   86 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~   86 (125)
                      .-+.+.|..+++.|+|++|+..|++++..+|+++.+|.++|.++..+|++++|+..       +.++++++|+++.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~~   76 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED-------GCKTVDLKPDWGKGYSR   76 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchh-------hhhHHHhccchhhHHHH
Confidence            34678999999999999999999999999999999999999999999999999999       99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           87 ILRLQPLAEEKLEKMK  102 (125)
Q Consensus        87 l~~~~~~~~~~~~~~~  102 (125)
                      ++.++..+++..++..
T Consensus        77 ~g~~~~~~~~~~~A~~   92 (117)
T d1elwa_          77 KAAALEFLNRFEEAKR   92 (117)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHccCHHHHHH
Confidence            9999999998877765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5e-14  Score=91.84  Aligned_cols=91  Identities=18%  Similarity=0.162  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      ++.-+...|+.+++.|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+..       |+++++++|++..++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-------~~kal~~~p~~~~a~   81 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD-------ATRAIELDKKYIKGY   81 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHH-------HHHHHHHcccchHHH
Confidence            3456788999999999999999999999999999999999999999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++.++..+++..++..
T Consensus        82 ~~~g~~~~~~g~~~eA~~   99 (159)
T d1a17a_          82 YRRAASNMALGKFRAALR   99 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHH
Confidence            999999999888777655

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.2e-14  Score=85.99  Aligned_cols=83  Identities=16%  Similarity=0.098  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPT-------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +.-++++|..+.+.|+|.+|+..|++++++.|.       .+.++.++|.++.++|++++|+..       ++++++++|
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~-------y~~aL~l~P   77 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLL-------TKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHH-------HHHHHHhCc
Confidence            455789999999999999999999999998654       368999999999999999999999       999999999


Q ss_pred             CcHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAE   95 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~   95 (125)
                      +++.+..++..+.+.+.
T Consensus        78 ~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          78 EHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999988776553

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.4e-15  Score=99.43  Aligned_cols=72  Identities=26%  Similarity=0.537  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +|..+.+|+++|.||.+.|+|++|+.+|++++.++|+++.+|+++|.++..+|+|++|+..       |+++++++|++
T Consensus        34 ~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~-------~~~al~l~p~~  105 (201)
T d2c2la1          34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN-------LQRAYSLAKEQ  105 (201)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHT
T ss_pred             CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCccc
Confidence            5788999999999999999999999999999999999999999999999999999999999       99999888753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6e-14  Score=94.55  Aligned_cols=93  Identities=19%  Similarity=0.139  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--   80 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--   80 (125)
                      +..+.+|+|+|.+|..+|+|++|+.+|+++++++|+++.+|+++|.++..+|+|++|+..       |++++...|++  
T Consensus        33 ~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~-------~~kAl~~~~~n~~  105 (192)
T d1hh8a_          33 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD-------LKEALIQLRGNQL  105 (192)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTTTCSE
T ss_pred             CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHH-------HHHHHHhCccCch
Confidence            445778999999999999999999999999999999999999999999999999999999       99998876543  


Q ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 --------------NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 --------------~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                                    .+++..++.++..+++...+..
T Consensus       106 ~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_         106 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence                          3567778887777776665554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5e-14  Score=89.22  Aligned_cols=84  Identities=20%  Similarity=0.229  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+..+-++|.+++..|+|++|+.+|++++.++|+++.+++++|.++..+|+|++|+.+       ++++++++|++..++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~al~l~~~~~~~~   75 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL-------CEKAIEVGRENREDY   75 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHH-------HHHHHHhCcccHHHH
Confidence            3556789999999999999999999999999999999999999999999999999999       999999999887766


Q ss_pred             HHHHHHHHHHH
Q 033182           85 RTILRLQPLAE   95 (125)
Q Consensus        85 ~~l~~~~~~~~   95 (125)
                      ..++.++..++
T Consensus        76 ~~~a~~~~~lg   86 (128)
T d1elra_          76 RQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66555554444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.4e-14  Score=89.79  Aligned_cols=87  Identities=16%  Similarity=0.219  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182            2 AELRSICHSNRGICFLK---LGKFEESIKECTKALELNPTY--MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      +|..+.+++|+|.++++   .+++.+|+..+++++..+|.+  +.+++++|.+|..+|+|++|+.+       |++++++
T Consensus        29 ~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~-------~~~aL~~  101 (122)
T d1nzna_          29 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY-------VRGLLQT  101 (122)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHh
Confidence            46778999999999987   456778999999999999865  55999999999999999999999       9999999


Q ss_pred             CCCcHHHHHHHHHHHHHHH
Q 033182           77 DPSNNQAKRTILRLQPLAE   95 (125)
Q Consensus        77 ~p~~~~~~~~l~~~~~~~~   95 (125)
                      +|++..+...+..+..++.
T Consensus       102 ~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_         102 EPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             CTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHc
Confidence            9999999999888877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=1.7e-13  Score=88.60  Aligned_cols=92  Identities=17%  Similarity=0.195  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-----------HHHHH
Q 033182            2 AELRSICHSNRGICFLKL----------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-----------FEEAI   60 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-----------~~~A~   60 (125)
                      +|.++.+++++|.++...          +.+++|+..|+++++++|+++.+|+++|.+|..+|+           |++|.
T Consensus        27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~  106 (145)
T d1zu2a1          27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  106 (145)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhh
Confidence            688999999999999864          456889999999999999999999999999998875           56666


Q ss_pred             HhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182           61 AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEK  100 (125)
Q Consensus        61 ~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  100 (125)
                      .+       |+++++++|++..++..|+...+..+...+.
T Consensus       107 ~~-------~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         107 QF-------FQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HH-------HHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hh-------hhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            66       9999999999999999999988777655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.6e-13  Score=92.30  Aligned_cols=89  Identities=20%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      +|..+.+|+++|.+|.++|++++|+..|++++.++|+++.+++++|.++..+|++++|+..       |+++++.+|++.
T Consensus        67 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~  139 (259)
T d1xnfa_          67 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD-------LLAFYQDDPNDP  139 (259)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred             CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHH-------HHHHHhhccccH
Confidence            5778899999999999999999999999999999999999999999999999999999999       999999999998


Q ss_pred             HHHHHHHHHHHHHHHH
Q 033182           82 QAKRTILRLQPLAEEK   97 (125)
Q Consensus        82 ~~~~~l~~~~~~~~~~   97 (125)
                      .....+.......+..
T Consensus       140 ~~~~~~~~~~~~~~~~  155 (259)
T d1xnfa_         140 FRSLWLYLAEQKLDEK  155 (259)
T ss_dssp             HHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHhhhH
Confidence            8877777665555433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3e-13  Score=95.67  Aligned_cols=85  Identities=19%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |....++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..       |+++++++|++++
T Consensus       302 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~l~P~~~~  374 (388)
T d1w3ba_         302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH-------YKEAIRISPTFAD  374 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH-------HHHHHTTCTTCHH
T ss_pred             CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCHH
Confidence            344566677777777777777777777777777777777777777777777777777777       7777777777777


Q ss_pred             HHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLA   94 (125)
Q Consensus        83 ~~~~l~~~~~~~   94 (125)
                      ++..++.++..+
T Consensus       375 a~~~lg~~~~~~  386 (388)
T d1w3ba_         375 AYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            777777666543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=93.74  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=79.5

Q ss_pred             ChhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182            1 MAELRSICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS   79 (125)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~   79 (125)
                      ++|...++|++||.++...|+ +++|+..+++++..+|++..+|+++|.++..+|++++|+..       +.++++++|+
T Consensus        72 lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~-------~~kal~~dp~  144 (315)
T d2h6fa1          72 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF-------IADILNQDAK  144 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH-------HHHHHHHCTT
T ss_pred             HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHH-------Hhhhhhhhhc
Confidence            357788888999988888774 88899999999999999999999999999999999988888       8888888999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           80 NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..++..++.+...+++..++..
T Consensus       145 n~~a~~~~~~~~~~~~~~~~Al~  167 (315)
T d2h6fa1         145 NYHAWQHRQWVIQEFKLWDNELQ  167 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             chHHHHHHHHHHHHHHhhHHHHH
Confidence            88888888888887776544433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5e-12  Score=89.02  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK   84 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~   84 (125)
                      .+.++.++|.++...|++++|+..+++++..+|+++.+|+++|.++..+|++++|+..       |+++++++|+++.++
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~~a~  243 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA-------YRRALELQPGYIRSR  243 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHH-------HHHHHHHhhccHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999       999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++.++...++..++..
T Consensus       244 ~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         244 YNLGISCINLGAHREAVE  261 (323)
T ss_dssp             HHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHH
Confidence            999999988887766654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-12  Score=82.02  Aligned_cols=86  Identities=17%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM-------KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      +|..+.++.++|.+|.++|+|++|+.++++++.++|.+.       .+|+++|.++..++++++|+.+       |++++
T Consensus        34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~-------~~kal  106 (128)
T d1elra_          34 DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF-------YNKSL  106 (128)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHH
T ss_pred             CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHH
Confidence            577889999999999999999999999999999998775       4667777777788888888888       99999


Q ss_pred             hhCCCcHHHHHHHHHHHHHHH
Q 033182           75 EFDPSNNQAKRTILRLQPLAE   95 (125)
Q Consensus        75 ~l~p~~~~~~~~l~~~~~~~~   95 (125)
                      ..+|+ +++...+..+.+.+.
T Consensus       107 ~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_         107 AEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHCCC-HHHHHHHHHHHHHHH
T ss_pred             hcCCC-HHHHHHHHHHHHHHh
Confidence            98875 566666666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.7e-12  Score=88.37  Aligned_cols=88  Identities=17%  Similarity=0.174  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI   87 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l   87 (125)
                      ..+++|..+++.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..       |.++++++|++..++..+
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~~l   93 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA-------LRRCLELKPDNQTALMAL   93 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH-------HHhhhccccccccccccc
Confidence            3578999999999999999999999999999999999999999999999999999       999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 033182           88 LRLQPLAEEKLEKMK  102 (125)
Q Consensus        88 ~~~~~~~~~~~~~~~  102 (125)
                      +.++...++..++..
T Consensus        94 a~~~~~~~~~~~A~~  108 (323)
T d1fcha_          94 AVSFTNESLQRQACE  108 (323)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             ccccccccccccccc
Confidence            998877776655443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.8e-12  Score=83.96  Aligned_cols=87  Identities=13%  Similarity=0.029  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      +.-+++.|..+...|+|+.|+..|++   +.|.++++|+++|.+|..+|++++|+.+       |+++++++|+++.++.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~-------~~kAl~ldp~~~~a~~   74 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKA-------FTRSINRDKHLAVAYF   74 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHH-------HHHHHHHhhhhhhhHH
Confidence            34566889999999999999999975   4677899999999999999999999999       9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKLEKMK  102 (125)
Q Consensus        86 ~l~~~~~~~~~~~~~~~  102 (125)
                      .++.++..+++..++..
T Consensus        75 ~~g~~~~~~g~~~~A~~   91 (192)
T d1hh8a_          75 QRGMLYYQTEKYDLAIK   91 (192)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhccHHHHHH
Confidence            99999998888776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.7e-11  Score=79.75  Aligned_cols=90  Identities=21%  Similarity=0.251  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---------------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVM   70 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~   70 (125)
                      +..+.+.|..+++.|+|++|+..|++++...|..               ..++.++|.||+++|+|++|+..       +
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~-------~   85 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES-------C   85 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-------H
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccch-------h
Confidence            4567799999999999999999999999997743               36788999999999999999999       9


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           71 KKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        71 ~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +++++++|++..++..++.++..+++..++..
T Consensus        86 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  117 (170)
T d1p5qa1          86 NKALELDSNNEKGLSRRGEAHLAVNDFELARA  117 (170)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhccccchhhhHHHHHHHHHhhhHHHHHH
Confidence            99999999999999999999999987776655

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.31  E-value=5.6e-12  Score=77.82  Aligned_cols=66  Identities=18%  Similarity=0.125  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL   74 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~   74 (125)
                      +|..+.+|.++|.++.+.|++++|+..++++++++|+++.+++++|.+|..+|++++|++.       +++.+
T Consensus        46 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~-------l~~~l  111 (112)
T d1hxia_          46 EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS-------LRAWL  111 (112)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred             ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHH-------HHHHh
Confidence            5778899999999999999999999999999999999999999999999999999999999       77654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-11  Score=86.49  Aligned_cols=93  Identities=20%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      |..+.++.++|.++...|++.+|+..+++++...|.+...+..+|.++..+|++++|+..       |+++++++|++..
T Consensus       268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~p~~~~  340 (388)
T d1w3ba_         268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL-------YRKALEVFPEFAA  340 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH-------HHHHTTSCTTCHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCHH
Confidence            444555666666666666666666666666666666666666666666666666666666       8888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..++.++...++..++..
T Consensus       341 ~~~~la~~~~~~g~~~~A~~  360 (388)
T d1w3ba_         341 AHSNLASVLQQQGKLQEALM  360 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            88888887777766555444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.26  E-value=1.8e-10  Score=74.49  Aligned_cols=90  Identities=19%  Similarity=0.160  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------------hHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY----------------MKALIRRAEAHEKLEHFEEAIAGIQDLMIV   69 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   69 (125)
                      +.-+...|..+++.|+|.+|+..|++++..-|..                ...+.++|.||.++|++++|+.+       
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~-------   89 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH-------   89 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhh-------
Confidence            3457789999999999999999999999875422                24788999999999999999999       


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           70 MKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        70 ~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +.++++++|++..++..++.++..+++...+..
T Consensus        90 ~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~  122 (153)
T d2fbna1          90 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE  122 (153)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hhccccccchhhhhhHHhHHHHHHcCCHHHHHH
Confidence            999999999999999999999999998877765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.9e-11  Score=85.86  Aligned_cols=94  Identities=16%  Similarity=0.115  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-HHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      +|.-..++.++|.++.+.+.+++|+..+++++.++|.+..+|+++|.++..+|. +++|+..       ++++++++|++
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~-------~~~al~~~p~~  111 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNY-------ITAIIEEQPKN  111 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHH-------HHHHHHHHHhh
Confidence            456678899999999999999999999999999999999999999999999885 9999999       99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++..++.+...+++..++..
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~  133 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELE  133 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHH
T ss_pred             hhHHHHHhHHHHhhccHHHHHH
Confidence            9999999999988886655544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.25  E-value=1.2e-10  Score=74.88  Aligned_cols=76  Identities=22%  Similarity=0.242  Sum_probs=66.3

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH----------HHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182           14 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF----------EEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      ..+.+++.|++|+..|+++++++|+++.+++++|.++..++++          ++|+..       |+++++++|++..+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~-------~~kAl~l~P~~~~a   77 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK-------FEEALLIDPKKDEA   77 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-------HHHHHHHCTTCHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-------HHHHHHhcchhhHH
Confidence            3456788999999999999999999999999999999866555          556666       99999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 033182           84 KRTILRLQPLAEE   96 (125)
Q Consensus        84 ~~~l~~~~~~~~~   96 (125)
                      +..++.++..+++
T Consensus        78 ~~~lG~~y~~~g~   90 (145)
T d1zu2a1          78 VWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHccc
Confidence            9999999877653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=9.8e-11  Score=76.55  Aligned_cols=89  Identities=24%  Similarity=0.267  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALEL----------------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM   70 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l----------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~   70 (125)
                      ..+...|..++..|+|.+|+..|++++.+                +|.+...+.++|.++.++|+|++|+..       +
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~-------~  100 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS-------C  100 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH-------H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhh-------h
Confidence            44678899999999999999999999854                467788999999999999999999999       9


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           71 KKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        71 ~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      .++++++|++..++..++.++..+++...+..
T Consensus       101 ~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~  132 (169)
T d1ihga1         101 LEALEIDPSNTKALYRRAQGWQGLKEYDQALA  132 (169)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhhhhhhhhHHHhHHHHHHHccCHHHHHH
Confidence            99999999999999999999999887766654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.16  E-value=1.1e-10  Score=76.47  Aligned_cols=91  Identities=19%  Similarity=0.221  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---------------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT---------------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIV   69 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   69 (125)
                      .+..+...|..+++.|+|.+|+..|++++..-|.               ....+.++|.||..+|+|++|+.+       
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~-------   86 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC-------   86 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhh-------
Confidence            3566889999999999999999999999975432               245788999999999999999999       


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           70 MKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        70 ~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++++++++|++..++..++.++..+++..++..
T Consensus        87 ~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~  119 (168)
T d1kt1a1          87 CDKALGLDSANEKGLYRRGEAQLLMNEFESAKG  119 (168)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhhcccchHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999987766655

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.1e-10  Score=71.16  Aligned_cols=86  Identities=7%  Similarity=-0.063  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH---chhHHHHHHhHHHHHHHHHHHHhhCCCc--HHHH
Q 033182           10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK---LEHFEEAIAGIQDLMIVMKKILEFDPSN--NQAK   84 (125)
Q Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~~a~~l~p~~--~~~~   84 (125)
                      .++...+...+++++|++.|++++.++|+++.+++++|.++.+   .+++++|+..       |+++++.+|.+  .+++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~-------l~~~l~~~~~~~~~~~~   75 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVL-------LEELLPKGSKEEQRDYV   75 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHH-------HHHHTTTSCHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHH-------HHHHHhccCCchHHHHH
Confidence            4677888899999999999999999999999999999999986   5566779999       99999998865  4588


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033182           85 RTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~  102 (125)
                      ..++.++..+++..++..
T Consensus        76 ~~Lg~~y~~~g~~~~A~~   93 (122)
T d1nzna_          76 FYLAVGNYRLKEYEKALK   93 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHH
Confidence            999999999998877766

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.13  E-value=3.1e-11  Score=78.17  Aligned_cols=70  Identities=26%  Similarity=0.393  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP-----------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK   72 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   72 (125)
                      ..+.+|.|+|.+|..+|+|++|+.++++++.+.|           ....+++++|.+|..+|++++|+..       |++
T Consensus        53 ~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~-------~~~  125 (156)
T d2hr2a1          53 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE-------FKK  125 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHH
T ss_pred             hHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHH-------HHH
Confidence            4568899999999999999999999999998754           2356899999999999999999999       877


Q ss_pred             HHhhCCCc
Q 033182           73 ILEFDPSN   80 (125)
Q Consensus        73 a~~l~p~~   80 (125)
                      ++++.|..
T Consensus       126 Al~l~~~~  133 (156)
T d2hr2a1         126 VVEMIEER  133 (156)
T ss_dssp             HHHHHHHC
T ss_pred             HHHhhHHh
Confidence            77776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.07  E-value=9.4e-10  Score=70.97  Aligned_cols=94  Identities=19%  Similarity=0.197  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182            9 HSNRGICFLKLGKFEESIKECTKALELNPTY------------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      +...|..++..|+|++|+..|++++.++|+.            +.+|.++|.+|..+|+|++|+..++.++-++.+....
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            3445888889999999999999999998764            4689999999999999999999977777776666666


Q ss_pred             CCCcH----HHHHHHHHHHHHHHHHHHHHH
Q 033182           77 DPSNN----QAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        77 ~p~~~----~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++...    .++..++.++..+++..++..
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~  121 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMP  121 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHH
Confidence            65533    356777888888887766554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=8.1e-10  Score=83.37  Aligned_cols=83  Identities=11%  Similarity=-0.040  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      ..++.++|.++..+|+|++|+.+|.+++.++|+++.+|+++|.++...|++.+|+.+       |.+++..+|.++.++.
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~-------y~ral~~~~~~~~a~~  224 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY-------YCRSIAVKFPFPAAST  224 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH-------HHHHHSSSBCCHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhCCCCCHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             HHHHHHHHHH
Q 033182           86 TILRLQPLAE   95 (125)
Q Consensus        86 ~l~~~~~~~~   95 (125)
                      +|..+.....
T Consensus       225 nL~~~~~~~~  234 (497)
T d1ya0a1         225 NLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9998876554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=2.9e-09  Score=66.89  Aligned_cols=82  Identities=13%  Similarity=0.043  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            7 ICHSNRGICFLKL---GKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         7 ~~~~~~~~~~~~~---~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      ...++.|++..+.   ++..+|+..++.+++.+|.. ..++|++|.+|.++|+|+.|..+       ++++++++|+|..
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~-------~~~~L~ieP~n~q  108 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY-------VDTLFEHERNNKQ  108 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHccCCCcHH
Confidence            3567888888865   45689999999999999976 47999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAE   95 (125)
Q Consensus        83 ~~~~l~~~~~~~~   95 (125)
                      +......+.+++.
T Consensus       109 A~~L~~~Ie~~~~  121 (124)
T d2pqrb1         109 VGALKSMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9888777766554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=4.3e-09  Score=69.84  Aligned_cols=79  Identities=14%  Similarity=0.125  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      .+....++.+++.++...|++++|+..+++++.++|.+..+|.+++.++..+|++.+|+..|++...++.+-+.++|+.
T Consensus        63 ~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          63 VEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            3556788999999999999999999999999999999999999999999999999999999888877777778899973

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.90  E-value=7e-09  Score=72.76  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=69.8

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182           15 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA   94 (125)
Q Consensus        15 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~   94 (125)
                      -.++.|++++|+..++++++.+|+++.++..+|.+++..|++++|...       |+++++++|++..+...+..+....
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~-------l~~a~~l~P~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQ-------LMQSIKLFPEYLPGASQLRHLVKAA   77 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            456789999999999999999999999999999999999999999999       9999999999999998888877655


Q ss_pred             HHHH
Q 033182           95 EEKL   98 (125)
Q Consensus        95 ~~~~   98 (125)
                      ....
T Consensus        78 ~~~~   81 (264)
T d1zbpa1          78 QARK   81 (264)
T ss_dssp             HHHH
T ss_pred             cccH
Confidence            5443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=4.8e-08  Score=64.59  Aligned_cols=94  Identities=16%  Similarity=0.145  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------------------hHHHHHHHHHHHHchhHHHH
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----------------------MKALIRRAEAHEKLEHFEEA   59 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----------------------~~~~~~~~~~~~~~~~~~~A   59 (125)
                      |-..+..+.+.|......|++++|+..|.+++.+.+..                      ..++.+++.++..+|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            34567788999999999999999999999999986532                      26789999999999999999


Q ss_pred             HHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182           60 IAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        60 ~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +..       ++++++++|.+..++..+..++...++..++..
T Consensus        87 l~~-------~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          87 IAE-------LEALTFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHH-------HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHH-------HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            999       999999999999999999999988887766654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.6e-08  Score=58.53  Aligned_cols=51  Identities=14%  Similarity=0.077  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE   54 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~   54 (125)
                      ..+.++.++|.++.++|++++|+..|+++++++|+++.++.+++.....++
T Consensus        44 ~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            356789999999999999999999999999999999999999987765443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=8.4e-09  Score=73.08  Aligned_cols=79  Identities=16%  Similarity=-0.041  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI   87 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l   87 (125)
                      .+.++|.++...+++.+|+..+.+++..+|.+..+++.+|.++..+|++++|+.+       |+++++++|.....+..+
T Consensus       244 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~-------~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         244 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-------FSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-------HHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHCcccHHHHHHH
Confidence            3456788889999999999999999999999999999999999999999999999       999999999998888877


Q ss_pred             HHHHHH
Q 033182           88 LRLQPL   93 (125)
Q Consensus        88 ~~~~~~   93 (125)
                      ......
T Consensus       317 ~~~~~~  322 (334)
T d1dcea1         317 RSKFLL  322 (334)
T ss_dssp             HHHHHH
T ss_pred             HHHHhH
Confidence            665543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=6.3e-08  Score=68.43  Aligned_cols=88  Identities=16%  Similarity=0.107  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCChHHH-HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            2 AELRSICHSNRGICFLKLGK--FEESIKECTKALELNPTYMKAL-IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~l~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      +|....+|+++|.++...++  +++|+..+.+++.++|.+..++ +..|.++...+.+++|+..       ++++++++|
T Consensus       103 ~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~-------~~~~i~~~p  175 (334)
T d1dcea1         103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF-------TDSLITRNF  175 (334)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH-------HHTTTTTTC
T ss_pred             CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHH-------HHHHHHcCC
Confidence            46678899999999988775  8999999999999999998886 5788999999999999999       999999999


Q ss_pred             CcHHHHHHHHHHHHHHHH
Q 033182           79 SNNQAKRTILRLQPLAEE   96 (125)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~   96 (125)
                      ++..++..++.+...+++
T Consensus       176 ~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         176 SNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             CCHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence            999999999999887754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.8e-08  Score=74.72  Aligned_cols=91  Identities=14%  Similarity=0.075  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      +.....+.++|..+.+.|++..|+..+.+++..+|.  .++.++|.++...|+|++|+.+       |++|++++|++..
T Consensus       117 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~-------y~~A~~l~P~~~~  187 (497)
T d1ya0a1         117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESY-------YRHAAQLVPSNGQ  187 (497)
T ss_dssp             --------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTBSH
T ss_pred             hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHH-------HHHHHHHCCCchH
Confidence            445667889999999999999999999999887764  6899999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033182           83 AKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~  102 (125)
                      ++..|+.++...++..++..
T Consensus       188 ~~~~Lg~~~~~~~~~~~A~~  207 (497)
T d1ya0a1         188 PYNQLAILASSKGDHLTTIF  207 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            99999999988776665544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=4.7e-07  Score=62.14  Aligned_cols=69  Identities=16%  Similarity=0.094  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      +..+.+..-+|.+++..|++++|+..+++++...|.+     ..++..+|.++..+|++++|+..       |++++++.
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~a~~~~   81 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL-------MQQTEQMA   81 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHH
Confidence            5677888889999999999999999999999999976     45888999999999999999999       88877765


Q ss_pred             C
Q 033182           78 P   78 (125)
Q Consensus        78 p   78 (125)
                      |
T Consensus        82 ~   82 (366)
T d1hz4a_          82 R   82 (366)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=1.3e-06  Score=60.70  Aligned_cols=91  Identities=16%  Similarity=0.150  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHH-chhHHHHHHhHHHHHHHHHHHHhhC
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEK-LEHFEEAIAGIQDLMIVMKKILEFD   77 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~a~~l~   77 (125)
                      .+.+|.++|.||.++|++++|+..+++++.+.+..      ..++.++|.++.. .|++++|+..       |++++++.
T Consensus        76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~-------~~~A~~l~  148 (290)
T d1qqea_          76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC-------YELAGEWY  148 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHH-------HHHHHHHH
Confidence            45788999999999999999999999988886544      6678888888865 6899999999       55555442


Q ss_pred             C---C---cHHHHHHHHHHHHHHHHHHHHHH
Q 033182           78 P---S---NNQAKRTILRLQPLAEEKLEKMK  102 (125)
Q Consensus        78 p---~---~~~~~~~l~~~~~~~~~~~~~~~  102 (125)
                      +   .   ...++..++.++...++..++..
T Consensus       149 ~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~  179 (290)
T d1qqea_         149 AQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (290)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence            2   1   23456667777766666655544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=7.8e-07  Score=61.87  Aligned_cols=66  Identities=5%  Similarity=-0.020  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182            6 SICHSNRGICFLKLGKFEESIKECTKALELN------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP   78 (125)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p   78 (125)
                      ..+|.+.|.+|..+++|++|+..|++++.+.      +..+.++.++|.+|..+|++++|+..       +++++++.+
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~-------~~~a~~~~~  108 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS-------LENAIQIFT  108 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH-------HHHhhHHhh
Confidence            4679999999999999999999999999873      34568999999999999999999999       665555543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=3.1e-06  Score=57.88  Aligned_cols=69  Identities=13%  Similarity=0.003  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      +.....+.++|.++...|++++|+..+++++..      .|....++..+|.++..+|++++|...       +++++++
T Consensus       248 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------l~~Al~l  320 (366)
T d1hz4a_         248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV-------LLDALKL  320 (366)
T ss_dssp             GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHH
Confidence            345667889999999999999999999999843      467788999999999999999999999       7777665


Q ss_pred             CC
Q 033182           77 DP   78 (125)
Q Consensus        77 ~p   78 (125)
                      .+
T Consensus       321 ~~  322 (366)
T d1hz4a_         321 AN  322 (366)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.11  E-value=1.6e-06  Score=60.38  Aligned_cols=93  Identities=10%  Similarity=0.068  Sum_probs=72.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-CCCc
Q 033182            2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-DPSN   80 (125)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-~p~~   80 (125)
                      +|.++.++.+++.+++..|++++|+..++++++++|++..++..++.++...+..+++...       ..+...+ +|..
T Consensus        26 ~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~-------~~~~~~~~~p~~   98 (264)
T d1zbpa1          26 SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG-------AATAKVLGENEE   98 (264)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS-------CCCEECCCSCHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH-------hhhhhcccCchH
Confidence            5888999999999999999999999999999999999999999999999999998888776       5443333 4444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 033182           81 NQAKRTILRLQPLAEEKLEKM  101 (125)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~  101 (125)
                      .........+....++..++.
T Consensus        99 ~~~~l~~a~~~~~~gd~~~A~  119 (264)
T d1zbpa1          99 LTKSLVSFNLSMVSQDYEQVS  119 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHH
Confidence            444444455444444444433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.97  E-value=6.5e-05  Score=50.62  Aligned_cols=76  Identities=13%  Similarity=-0.011  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEFDPSN   80 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l~p~~   80 (125)
                      ++..++++|..+.+.+++++|+..|+++...  .++.+++++|.+|..    ..++..|..+       ++.+..  +++
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~-------~~~a~~--~~~   69 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASF-------YAKACD--LNY   69 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHH--TTC
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHh-------hccccc--ccc
Confidence            3678999999999999999999999999765  588999999999997    6788899888       777665  345


Q ss_pred             HHHHHHHHHHH
Q 033182           81 NQAKRTILRLQ   91 (125)
Q Consensus        81 ~~~~~~l~~~~   91 (125)
                      +.+...++.+.
T Consensus        70 ~~a~~~l~~~~   80 (265)
T d1ouva_          70 SNGCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cchhhcccccc
Confidence            56555555544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=3.9e-05  Score=47.53  Aligned_cols=48  Identities=15%  Similarity=0.145  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 033182            4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE   51 (125)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~   51 (125)
                      ..-.+++++|.+|.++|+|+.|...+++++.++|++..+....-.+-.
T Consensus        71 ~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1          71 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED  118 (124)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence            345899999999999999999999999999999999998766655543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=0.00012  Score=50.72  Aligned_cols=81  Identities=11%  Similarity=-0.036  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182            3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN   81 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~   81 (125)
                      |....+|...+......|+++.|...|++++...|.+ ...|...+......|+++.|...       |.++++..|.+.
T Consensus        96 p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i-------~~~al~~~~~~~  168 (308)
T d2onda1          96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI-------FKKAREDARTRH  168 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH-------HHHHHTSTTCCT
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH-------HHHHHHhCCCcH
Confidence            3445567777777777888888888888888887765 34677778888888888888777       777777777776


Q ss_pred             HHHHHHHHH
Q 033182           82 QAKRTILRL   90 (125)
Q Consensus        82 ~~~~~l~~~   90 (125)
                      ..+...+.+
T Consensus       169 ~~~~~~a~~  177 (308)
T d2onda1         169 HVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=0.00022  Score=49.30  Aligned_cols=85  Identities=9%  Similarity=-0.157  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182            7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE-KLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR   85 (125)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~   85 (125)
                      .+|...+....+.|+++.|...|++++...|.....+...+.... ..|+.+.|...       |++++...|+++..+.
T Consensus       135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i-------~e~~l~~~p~~~~~w~  207 (308)
T d2onda1         135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI-------FELGLKKYGDIPEYVL  207 (308)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH-------HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH-------HHHHHHhhhhhHHHHH
Confidence            356777777777777888888888888888877777777776543 34677777777       7777777777777777


Q ss_pred             HHHHHHHHHHHHH
Q 033182           86 TILRLQPLAEEKL   98 (125)
Q Consensus        86 ~l~~~~~~~~~~~   98 (125)
                      ...+.....++..
T Consensus       208 ~y~~~~~~~g~~~  220 (308)
T d2onda1         208 AYIDYLSHLNEDN  220 (308)
T ss_dssp             HHHHHHHTTCCHH
T ss_pred             HHHHHHHHcCChH
Confidence            6666665555443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.04  E-value=0.00094  Score=44.64  Aligned_cols=73  Identities=19%  Similarity=0.152  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182            5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      .+.+++++|.+|..    ..+++.|+..|+++...+  ++.+.+++|.+|..    ..+++.|..+       |+++...
T Consensus       177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~-------~~kAa~~  247 (265)
T d1ouva_         177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIEN-------FKKGCKL  247 (265)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHH-------HHHHHHH
T ss_pred             ccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHH-------HHHHHHC
Confidence            46778899988887    568999999999998874  68899999999986    4478889999       8888776


Q ss_pred             CCCcHHHHHHHH
Q 033182           77 DPSNNQAKRTIL   88 (125)
Q Consensus        77 ~p~~~~~~~~l~   88 (125)
                      .+  ..+...+.
T Consensus       248 g~--~~A~~~l~  257 (265)
T d1ouva_         248 GA--KGACDILK  257 (265)
T ss_dssp             TC--HHHHHHHH
T ss_pred             cC--HHHHHHHH
Confidence            43  34444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.70  E-value=0.0082  Score=36.28  Aligned_cols=63  Identities=10%  Similarity=0.030  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182            5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF   76 (125)
Q Consensus         5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l   76 (125)
                      .+.+.+++|..|..    ..+++.|+..|+++...  .++.+.+++|.+|..    ..++++|..+       |+++.+.
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~-------~~~Aa~~  124 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKT-------FEKACRL  124 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHT
T ss_pred             chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHH-------HHHHHHC
Confidence            34566777777765    34577788888777654  456777777777776    4567777777       6666664

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.011  Score=33.24  Aligned_cols=47  Identities=19%  Similarity=0.264  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI   87 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l   87 (125)
                      +-.+-+++.-+...|+|++|+++.+++++.+..|+++ |.+..+...|
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~kl-t~s~~~l~SL   54 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL-TESEQAHLSL   54 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            3466789999999999999999999999999999998 5556555433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.04  E-value=0.16  Score=30.18  Aligned_cols=64  Identities=13%  Similarity=-0.055  Sum_probs=51.7

Q ss_pred             hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 033182           19 LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPL   93 (125)
Q Consensus        19 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~   93 (125)
                      ..++++|+..++++...  .++.+.+++|..|..    ..++++|..+       |+++.+.  +++.+...|+.++..
T Consensus        36 ~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~-------~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY-------YSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH-------HHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH-------Hhhhhcc--CcchHHHHHHHHHHc
Confidence            45789999999998765  578999999999986    5678889999       9888774  677888888887653

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.34  Score=27.46  Aligned_cols=41  Identities=15%  Similarity=0.277  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182           42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ   82 (125)
Q Consensus        42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~   82 (125)
                      .....|.-+-..|+|++|+..|+.++.+|..++..+|+...
T Consensus        17 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~   57 (93)
T d1wfda_          17 AVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSK   57 (93)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence            44566777778899999999999999999999998876543

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.24  Score=27.10  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182           42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA   83 (125)
Q Consensus        42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~   83 (125)
                      .+...|.-.-..|+|++|+..|..|+.+|..+++.+|+++..
T Consensus        13 ~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~   54 (77)
T d1wr0a1          13 DLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKA   54 (77)
T ss_dssp             HHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGG
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence            345566667788999999999999999999999988776553

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.29  E-value=0.7  Score=25.62  Aligned_cols=29  Identities=34%  Similarity=0.331  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033182            5 RSICHSNRGICFLKLGKFEESIKECTKAL   33 (125)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al   33 (125)
                      .+-.+..++..+.+.|+|++|+.+.+++.
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45567889999999999999999988875

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.33  E-value=1.1  Score=32.78  Aligned_cols=53  Identities=15%  Similarity=0.077  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHH
Q 033182            8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI   60 (125)
Q Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~   60 (125)
                      ....++...+..|+|..|....+.++..+|++.++...++.++..+|.-.+..
T Consensus       432 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~~  484 (505)
T d2cfua2         432 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENA  484 (505)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcCH
Confidence            34567888888999999999999999999999999999999999888765533

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.24  E-value=3.7  Score=29.93  Aligned_cols=53  Identities=13%  Similarity=0.142  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 033182           40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLE   99 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~   99 (125)
                      .......+......|+|..|...       ...++..+|+|.+++..+.++++++..+.+
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l-------~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~  482 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEV-------VNRLVFAEPDNRAARELQADALEQLGYQAE  482 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCHHHHHHHHHHHHHHHHhCc
Confidence            55667788888899999999999       999999999999999999999998886643