Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 125
cd00293 130
cd00293, USP_Like, Usp: Universal stress protein f
1e-08 pfam00582 139
pfam00582, Usp, Universal stress protein family
6e-07 cd01989 146
cd01989, STK_N, The N-terminal domain of Eukaryoti
0.002
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family
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Score = 49.3 bits (118), Expect = 1e-08
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 29/135 (21%)
Query: 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLP 67
++V +D SE S AL+W +LV++H P + E
Sbjct: 1 RILVAVDGSEESERALRWAARLARRLGA-----ELVLLHVVDPPPSSAAELAELLEEEAR 55
Query: 68 HVDSDLKKIAAR-----------------LVEEAKEICSSKSVM-------ISLAVLGSV 103
+ L++ A ++E A+E+ + VM + +LGSV
Sbjct: 56 ALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSV 115
Query: 104 SDYCAHHAHCTVMIV 118
++ HA C V++V
Sbjct: 116 AERVLRHAPCPVLVV 130
The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family
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Score = 45.2 bits (107), Expect = 6e-07
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 34/142 (23%)
Query: 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS-------------- 52
+ ++V +D SE S AL+W L+ +L+++H
Sbjct: 3 KRILVAVDGSEESERALEWALE-----LAKRRGAELILLHVIDPEPSGAASEALEEEEEE 57
Query: 53 --------AVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKE-------ICSSKSVMISL 97
A A A V+ V A ++E A+E + S +
Sbjct: 58 ELEEEEAEAEALAAAAEAGGVVVEVVVRGGDPAEAILEVAEEEDADLIVMGSRGRSGLRR 117
Query: 98 AVLGSVSDYCAHHAHCTVMIVK 119
+LGSV++ HA C V++V+
Sbjct: 118 LLLGSVAEKVLRHAPCPVLVVR 139
The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity. Length = 139
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases
Back Show alignment and domain information
Score = 35.7 bits (83), Expect = 0.002
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLP 67
++ V +D + S AL+W LD+ T LV VH P S
Sbjct: 1 SVAVAVDKDKKSKNALKWALDNLA---TKGQTIVLVHVH-PPITSIPSSSGKLEVASAYK 56
Query: 68 HVDSDLKKIAARLVEEAKEICSSKSVMISLAVL 100
+ K A L+ + CS K V VL
Sbjct: 57 Q---EEDKEAKELLLPYRCFCSRKGVQCEDVVL 86
The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
125
PRK15456 142
universal stress protein UspG; Provisional
99.85 PRK15005 144
universal stress protein F; Provisional
99.84 PRK09982 142
universal stress protein UspD; Provisional
99.83 cd01989 146
STK_N The N-terminal domain of Eukaryotic Serine T
99.8 PRK15118 144
universal stress global response regulator UspA; P
99.79 PF00582 140
Usp: Universal stress protein family; InterPro: IP
99.75 PRK10116 142
universal stress protein UspC; Provisional
99.74 PRK11175 305
universal stress protein UspE; Provisional
99.74 cd01988 132
Na_H_Antiporter_C The C-terminal domain of a subfa
99.71 cd01987 124
USP_OKCHK USP domain is located between the N-term
99.66 PRK11175 305
universal stress protein UspE; Provisional
99.56 COG0589 154
UspA Universal stress protein UspA and related nuc
99.52 cd00293 130
USP_Like Usp: Universal stress protein family. The
99.47 PRK12652 357
putative monovalent cation/H+ antiporter subunit E
99.26 PRK10490 895
sensor protein KdpD; Provisional
98.17 cd01984 86
AANH_like Adenine nucleotide alpha hydrolases supe
97.87 COG2205 890
KdpD Osmosensitive K+ channel histidine kinase [Si
97.82 PF01171 182
ATP_bind_3: PP-loop family; InterPro: IPR011063 Th
86.08 TIGR02432 189
lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t
85.91 PLN03159 832
cation/H(+) antiporter 15; Provisional
85.14 PLN03159 832
cation/H(+) antiporter 15; Provisional
82.17 PRK06029 185
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Prov
81.61
>PRK15456 universal stress protein UspG; Provisional
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Probab=99.85 E-value=3.9e-20 Score=118.59 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCCh--HHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSE--HSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE 82 (125)
Q Consensus 5 ~~~~IlvavD~s~--~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (125)
||++||+|+|||+ .+.+|+++|..+++.. + +++++||+++..... ..... ...+.+.+...+..++.++
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~----~--~l~llhv~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~ 71 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD----G--VIHLLHVLPGSASLS-LHRFA--ADVRRFEEHLQHEAEERLQ 71 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcC----C--eEEEEEEecCccccc-ccccc--cchhhHHHHHHHHHHHHHH
Confidence 5899999999994 8999999999999864 5 999999998753211 11100 1112233444444445555
Q ss_pred HHHHHhhhcCc------------------------c----------cceeeeCcchHHHhccCCccEEEEc
Q 033189 83 EAKEICSSKSV------------------------M----------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 83 ~~~~~~~~~~~------------------------~----------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
.+.+.+...+. + +.++++||++++|+++++||||+||
T Consensus 72 ~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 72 TMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred HHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEEEeC
Confidence 44433321111 0 6678999999999999999999996
>PRK15005 universal stress protein F; Provisional
Back Show alignment and domain information
Probab=99.84 E-value=5.6e-20 Score=117.80 Aligned_cols=108 Identities=24% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCCeEEEEeCCChH--HHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSEH--STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE 82 (125)
Q Consensus 5 ~~~~IlvavD~s~~--s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (125)
||++||+|+|+|+. +.+|++||..+|+.. + + +++++||+++...+.......... ... .+..++..++.++
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~-~--~--~l~ll~v~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ 73 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKID-D--A--EVHFLTVIPSLPYYASLGLAYSAE-LPA-MDDLKAEAKSQLE 73 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhcc-C--C--eEEEEEEEccCccccccccccccc-chH-HHHHHHHHHHHHH
Confidence 58999999999997 579999999999987 7 7 999999998644322111000000 011 1122222233333
Q ss_pred HHHHHhhhcC------------------------cc----------cceeeeCcchHHHhccCCccEEEEc
Q 033189 83 EAKEICSSKS------------------------VM----------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 83 ~~~~~~~~~~------------------------~~----------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
.+.+.+...+ ++ +.++++||++++|+++++||||+||
T Consensus 74 ~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 74 EIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCCCCEEEeC
Confidence 3322221111 11 7788999999999999999999996
>PRK09982 universal stress protein UspD; Provisional
Back Show alignment and domain information
Probab=99.83 E-value=8.2e-20 Score=117.31 Aligned_cols=110 Identities=12% Similarity=0.017 Sum_probs=74.4
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
|+|++||||+|+|+.|..|+++|..+|+.. + + +|+++||.++.+.... .... . ..+...+..++.+++.+++
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~-~--a--~l~llhV~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHN-D--A--HLTLIHIDDGLSELYP-GIYF-P-ATEDILQLLKNKSDNKLYK 72 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHh-C--C--eEEEEEEccCcchhch-hhhc-c-chHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999987 7 7 9999999876442211 0000 0 1122333444444445544
Q ss_pred HHHHhhhcC----------------------cc----------cceeeeCcchHHHhccCCccEEEEcCCCC
Q 033189 84 AKEICSSKS----------------------VM----------ISLAVLGSVSDYCAHHAHCTVMIVKRPKT 123 (125)
Q Consensus 84 ~~~~~~~~~----------------------~~----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~~ 123 (125)
..+.+...+ .+ +++++ | ++++|+++++||||+||...+
T Consensus 73 ~~~~~~~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~-~-va~~V~~~s~~pVLvv~~~~~ 142 (142)
T PRK09982 73 LTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLM-P-AYRGMINKMSADLLIVPFIDK 142 (142)
T ss_pred HHHhcCCCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCChhHHHHHH-H-HHHHHHhcCCCCEEEecCCCC
Confidence 443322111 11 55555 5 999999999999999998653
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases
Back Show alignment and domain information
Probab=99.80 E-value=1.1e-18 Score=112.07 Aligned_cols=106 Identities=27% Similarity=0.468 Sum_probs=75.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEI 87 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (125)
+||||+|+|+.|.+|++||+.+++.. + + +++++||.++........ ......+.+.++.++..+..++++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~-~--~--~l~ll~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATK-G--Q--TIVLVHVHPPITSIPSSS--GKLEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCC-C--C--cEEEEEeccCcccCCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999987 7 7 999999987643221111 100112233344445566666666655
Q ss_pred hhhcCcc------------------------------------cceeeeC-cchHHHhccCC--ccEEEEcC
Q 033189 88 CSSKSVM------------------------------------ISLAVLG-SVSDYCAHHAH--CTVMIVKR 120 (125)
Q Consensus 88 ~~~~~~~------------------------------------~~~~~~G-s~s~~vl~~a~--~pVlvV~~ 120 (125)
+...++. +.++++| |++++|+++++ ||||+|++
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeC
Confidence 5433221 6677887 69999999999 99999986
The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
>PRK15118 universal stress global response regulator UspA; Provisional
Back Show alignment and domain information
Probab=99.79 E-value=7.6e-19 Score=112.70 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=37.9
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
|+|++||+|+|+|+.+..|+++|..+|+.. + + +|+++||.+
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~-~--a--~l~ll~v~~ 41 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPY-N--A--KVSLIHVDV 41 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhh-C--C--EEEEEEEcc
Confidence 579999999999999999999999999986 7 7 999999953
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents
Back Show alignment and domain information
Probab=99.75 E-value=7.3e-18 Score=105.89 Aligned_cols=45 Identities=27% Similarity=0.435 Sum_probs=40.8
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcc
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAV 54 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~ 54 (125)
|||+||||+|+++.+..+++||+.+++.. + + +++++||.+.....
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~-~--~--~i~~l~v~~~~~~~ 45 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRS-G--A--EITLLHVIPPPPQY 45 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHH-T--C--EEEEEEEEESCHCH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhh-C--C--eEEEEEeecccccc
Confidence 68999999999999999999999999997 7 7 99999999986644
UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
>PRK10116 universal stress protein UspC; Provisional
Back Show alignment and domain information
Probab=99.74 E-value=1.6e-17 Score=106.16 Aligned_cols=109 Identities=11% Similarity=0.114 Sum_probs=72.1
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
|+|++|||++|+|+.+..|+++|+.+|+.. + + +|+++|+++.+..+.... ....+...+...+..++.+++
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~-~--a--~l~ll~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ 71 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPV-N--G--KISLITLASDPEMYNQFA----APMLEDLRSVMQEETQSFLDK 71 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHh-C--C--EEEEEEEccCcccchhhh----HHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999996 7 7 999999987643221111 111122333333333344443
Q ss_pred HHHHhh----------------------hcCcc-----------cceeeeCcchHHHhccCCccEEEEcCCCC
Q 033189 84 AKEICS----------------------SKSVM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRPKT 123 (125)
Q Consensus 84 ~~~~~~----------------------~~~~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~~ 123 (125)
...... +.+++ +.++ +|++++++++++||||+||.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~--~s~a~~v~~~~~~pVLvv~~~~~ 142 (142)
T PRK10116 72 LIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA--SCSAKRVIASSEVDVLLVPLTGD 142 (142)
T ss_pred HHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH--HHHHHHHHhcCCCCEEEEeCCCC
Confidence 322211 00111 4443 38999999999999999998753
>PRK11175 universal stress protein UspE; Provisional
Back Show alignment and domain information
Probab=99.74 E-value=2.5e-17 Score=117.26 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=72.9
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
|+|++||||+|+|+.+..|+++|+.+|+.. + + +|+++|+.+...... ..... ........+...+.....++.
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~-~--a--~l~ll~v~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~ 73 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRN-G--G--KITAFLPIYDFSYEM-TTLLS-PDEREAMRQGVISQRTAWIRE 73 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhc-C--C--CEEEEEeccCchhhh-hcccc-hhHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999997 7 7 999999986533211 11000 111111111111222233333
Q ss_pred HHHHhhhcCc-------------------------c-----------cceeeeCcchHHHhccCCccEEEEcCC
Q 033189 84 AKEICSSKSV-------------------------M-----------ISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 84 ~~~~~~~~~~-------------------------~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
..+.+...++ + +.++++||++++|+++++||||+||..
T Consensus 74 ~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 74 QAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred HHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 3222222111 1 778899999999999999999999974
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea
Back Show alignment and domain information
Probab=99.71 E-value=3.1e-16 Score=98.62 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=66.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEI 87 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (125)
+||||+|+++.+.+++++|..+++.. + + +++++|+++.+..... . ... ...+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~-~--~--~v~ll~v~~~~~~~~~-~------~~~----~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQ-N--G--EIIPLNVIEVPNHSSP-S------QLE----VNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcC-C--C--eEEEEEEEecCCCCCc-c------hhH----HHHHHHHHHHHHHHHH
Confidence 59999999999999999999999986 6 7 9999999987543211 0 001 1112222333333222
Q ss_pred hhhcC-------------------------cc-----------cceeeeCcchHHHhccCCccEEEEc
Q 033189 88 CSSKS-------------------------VM-----------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 88 ~~~~~-------------------------~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
+...+ ++ +.++++||++.+|+++++||||+|+
T Consensus 65 ~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 65 AASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred hhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 22211 11 5578899999999999999999986
Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family
Back Show alignment and domain information
Probab=99.66 E-value=3.7e-16 Score=97.72 Aligned_cols=93 Identities=15% Similarity=0.067 Sum_probs=64.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHH--
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAK-- 85 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 85 (125)
+||||+|+|+.+.++++||+.+++.. + + +|+++||.+..... . . + +.++..+.+.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~-~--~--~l~ll~v~~~~~~~------~-~---~----~~~~~l~~~~~~~~~~ 61 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL-K--A--PWYVVYVETPRLNR------L-S---E----AERRRLAEALRLAEEL 61 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh-C--C--CEEEEEEecCcccc------C-C---H----HHHHHHHHHHHHHHHc
Confidence 59999999999999999999999997 7 7 99999998754321 0 0 0 11111111111111
Q ss_pred -----------------HHhhhcCcc-----------cceeeeCcchHHHhccC-CccEEEEc
Q 033189 86 -----------------EICSSKSVM-----------ISLAVLGSVSDYCAHHA-HCTVMIVK 119 (125)
Q Consensus 86 -----------------~~~~~~~~~-----------~~~~~~Gs~s~~vl~~a-~~pVlvV~ 119 (125)
+.+.+.+++ +.++++||++++|++++ +|||||++
T Consensus 62 ~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 62 GAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 111111221 78889999999999999 99999986
The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
>PRK11175 universal stress protein UspE; Provisional
Back Show alignment and domain information
Probab=99.56 E-value=7.5e-14 Score=99.37 Aligned_cols=114 Identities=13% Similarity=0.189 Sum_probs=67.8
Q ss_pred CCCeEEEEeCCChH-------HHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCccccc--CCCCCcccchhHHHHHHH
Q 033189 5 ETQTMVVGIDDSEH-------STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGL--AGHGAVEVLPHVDSDLKK 75 (125)
Q Consensus 5 ~~~~IlvavD~s~~-------s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 75 (125)
.+++||+|+|+|+. +..++++|..+++..-+ + +++++||++........ ......+..+...+...+
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~--a--~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNH--A--EVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLL 226 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcC--C--ceEEEEEecCcchhccccccccchhhHHHHHHHHHHH
Confidence 47899999999975 36899999999987303 5 99999998754322111 000001111111111111
Q ss_pred HHHHHHHHH------------------HHHhhhcCcc-----------cceeeeCcchHHHhccCCccEEEEcCCC
Q 033189 76 IAARLVEEA------------------KEICSSKSVM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRPK 122 (125)
Q Consensus 76 ~~~~~l~~~------------------~~~~~~~~~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~ 122 (125)
..+++.+.. .+.+.+.+++ +.++++||++++|+++++||||+||++.
T Consensus 227 ~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 227 AMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCCC
Confidence 122221110 0001111111 7789999999999999999999998754
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=99.52 E-value=8.2e-13 Score=84.56 Aligned_cols=113 Identities=23% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCCCeEEEEeC-CChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGID-DSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE 82 (125)
Q Consensus 4 ~~~~~IlvavD-~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (125)
.++++|++++| +++.+..+++++..++... + . .+.+++|.+.............................+.++
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~-~--~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRL-G--A--PLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLA 77 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhc-C--C--eEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHH
Confidence 47899999999 9999999999999999997 7 6 999999987755432111100000000111111122222222
Q ss_pred HHHHHhhhcC--------------------------cc-----------cceeeeCcchHHHhccCCccEEEEcCC
Q 033189 83 EAKEICSSKS--------------------------VM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 83 ~~~~~~~~~~--------------------------~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
.+.+.....+ .+ ++++++||++++|+++++||||++|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~~~ 153 (154)
T COG0589 78 EAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVRSE 153 (154)
T ss_pred HHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEccC
Confidence 2222211111 00 677899999999999999999999975
>cd00293 USP_Like Usp: Universal stress protein family
Back Show alignment and domain information
Probab=99.47 E-value=1.8e-12 Score=80.39 Aligned_cols=95 Identities=28% Similarity=0.435 Sum_probs=65.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEI 87 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (125)
+||||+|+++.+..++++|..+++.. + + +++++|+.+....... ...+......++.++.....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~-~--~--~i~~l~v~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL-G--A--ELVLLHVVDPPPSSAA-----------ELAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc-C--C--EEEEEEEecCCCCcch-----------hHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999997 7 7 9999999876443211 11122222223333333322
Q ss_pred hhhcCc------------------------c-----------cceeeeCcchHHHhccCCccEEEE
Q 033189 88 CSSKSV------------------------M-----------ISLAVLGSVSDYCAHHAHCTVMIV 118 (125)
Q Consensus 88 ~~~~~~------------------------~-----------~~~~~~Gs~s~~vl~~a~~pVlvV 118 (125)
+...++ + +.++++|+++.+++++++||||++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 65 LAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 211111 1 556799999999999999999985
The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Back Show alignment and domain information
Probab=99.26 E-value=1.8e-10 Score=83.99 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHHhhhc-CCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHH
Q 033189 3 TAETQTMVVGIDDSEHSTYALQWTLDHFFAN-STVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLV 81 (125)
Q Consensus 3 ~~~~~~IlvavD~s~~s~~a~~~a~~la~~~-~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (125)
.++|+|||||+|||+.|++|+++|+.+|+.. ++ + +|+++||.+....... .+ ...+..++++
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~--A--eL~lL~Vv~~~~~~~~---------~~----~~~~~~eell 64 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAET--P--TVHLVAAASGRAVDPE---------GQ----DELAAAEELL 64 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCC--C--EEEEEEEecCcccccc---------hh----HHHHHHHHHH
Confidence 4689999999999999999999999999983 04 5 9999999985432110 01 1112233344
Q ss_pred HHHHHHhhh------cCcccceee---------eCcchHHHhccC---CccEEEEcCC
Q 033189 82 EEAKEICSS------KSVMISLAV---------LGSVSDYCAHHA---HCTVMIVKRP 121 (125)
Q Consensus 82 ~~~~~~~~~------~~~~~~~~~---------~Gs~s~~vl~~a---~~pVlvV~~~ 121 (125)
+++++.+.. .++.....+ .|..++.|+..+ +|..+|+-++
T Consensus 65 e~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 65 ERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred HHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 444443332 355533222 289999998877 5898888764
>PRK10490 sensor protein KdpD; Provisional
Back Show alignment and domain information
Probab=98.17 E-value=1.7e-05 Score=64.44 Aligned_cols=41 Identities=7% Similarity=-0.053 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
...+|||||++++.+++++++|.++|.+. + + +++++||.++
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~-~--a--~~~~l~V~~~ 289 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARL-G--S--VWHAVYVETP 289 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhc-C--C--CEEEEEEecC
Confidence 34679999999999999999999999997 8 7 9999999865
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)
Back Show alignment and domain information
Probab=97.87 E-value=0.00011 Score=42.85 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=51.3
Q ss_pred EEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHh
Q 033189 9 MVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEIC 88 (125)
Q Consensus 9 IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (125)
||++++++..|..++.++.+.+... . +++.+|+. .......+.+
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~----~--~~~~~~~~------------------------------~~~~~~~~~a 44 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGG----P--EVVALVVV------------------------------AFVRILKRLA 44 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcC----C--CEEEEEeH------------------------------HHHHHHHHHH
Confidence 6899999999999999999988443 5 88888886 1122222222
Q ss_pred hhcCcc-----------cceeeeC-cchHHHhccCCccEEE
Q 033189 89 SSKSVM-----------ISLAVLG-SVSDYCAHHAHCTVMI 117 (125)
Q Consensus 89 ~~~~~~-----------~~~~~~G-s~s~~vl~~a~~pVlv 117 (125)
.+.+++ ....+.| +++..++..++|||+.
T Consensus 45 ~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 45 AEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred HHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 222322 4445556 8999999999999974
The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=97.82 E-value=0.00018 Score=57.33 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=66.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAK 85 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (125)
..+||||+++++.+.+.+++|.++|.+. + + +++.+||..+.....+ +..++..+..+.-++
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~-~--a--~~~av~v~~~~~~~~~--------------~~~~~~l~~~~~Lae 308 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRL-H--A--KWTAVYVETPELHRLS--------------EKEARRLHENLRLAE 308 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHh-C--C--CeEEEEEecccccccc--------------HHHHHHHHHHHHHHH
Confidence 3689999999999999999999999997 7 7 9999999876542210 011111111111111
Q ss_pred -------------------HHhhhcCcc-----------cceeeeCcchHHHhccCC-ccEEEEcCCC
Q 033189 86 -------------------EICSSKSVM-----------ISLAVLGSVSDYCAHHAH-CTVMIVKRPK 122 (125)
Q Consensus 86 -------------------~~~~~~~~~-----------~~~~~~Gs~s~~vl~~a~-~pVlvV~~~~ 122 (125)
+.+...++. +.+++.||..++++++.+ +.|-+|+.+.
T Consensus 309 ~lGae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~~ 376 (890)
T COG2205 309 ELGAEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALDA 376 (890)
T ss_pred HhCCeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCCC
Confidence 112222221 555667999999999985 8999998754
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]
Back Show alignment and domain information
Probab=86.08 E-value=3.3 Score=27.37 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=30.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+|+||+.|...|...+.....+.+.. + - ++.++||-..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~-~--~--~~~~~~vdh~ 38 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN-G--I--KLIAVHVDHG 38 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT-T--T--EEEEEEEE-S
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc-C--C--CeEEEEEecC
Confidence 69999999999999998888888876 6 5 9999999654
The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain
Back Show alignment and domain information
Probab=85.91 E-value=2.6 Score=27.86 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=31.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+|+|++.|...|.-++..+...++.. + . ++.++|+-..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~-~--~--~v~~v~vd~g 38 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL-K--I--RLIAAHVDHG 38 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc-C--C--CEEEEEeCCC
Confidence 58999999999999998888877775 6 5 8888888543
The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
>PLN03159 cation/H(+) antiporter 15; Provisional
Back Show alignment and domain information
Probab=85.14 E-value=4.5 Score=33.47 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=30.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCC
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~ 52 (125)
-|||+|+...+.....+..+-..-... . .+..++++|.++...
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t~-~--sp~~vy~lhLveL~~ 501 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPTK-R--SPICIYVLHLVELTG 501 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCCC-C--CCceEEEEEEEeecC
Confidence 379999998888877776655533322 2 334899999998654
>PLN03159 cation/H(+) antiporter 15; Provisional
Back Show alignment and domain information
Probab=82.17 E-value=17 Score=30.25 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=35.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
..+|.+..=|.+..+.|+.||.+++++. + . .++++|..+..
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p-~--v--~lTVirf~~~~ 670 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHP-G--I--TLTVMRFIPGE 670 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCC-C--e--EEEEEEEEccc
Confidence 3478888888899999999999999987 6 6 99999998753
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Back Show alignment and domain information
Probab=81.61 E-value=4.6 Score=27.14 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=29.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
.++|+++|-||-.+..+.+..-.+.+.. | . ++.++-.
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~-g--~--~V~vv~T 37 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVG-E--I--ETHLVIS 37 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhc-C--C--eEEEEEC
Confidence 3689999999999999999998887754 5 5 7655544
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 125
d2gm3a1 171
c.26.2.4 (A:5-175) Putative ethylene-responsive pr
9e-10 d1mjha_ 160
c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa
2e-05 d1tq8a_ 147
c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobac
2e-05 d2z3va1 135
c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {
4e-04 d1jmva_ 140
c.26.2.4 (A:) Universal stress protein A, UspA {Ha
6e-04
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 51.4 bits (122), Expect = 9e-10
Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 48/158 (30%)
Query: 10 VVGIDDSE---------HSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAG- 59
+V ++ S A +WTL+ ++T FK++++H +
Sbjct: 5 MVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNT--SDFKILLLHVQVVDEDGFDDVDS 62
Query: 60 -HGAVEVLPHVDSDLKKIAARLVEEAKEIC------------------------------ 88
+ + E + K L+E C
Sbjct: 63 IYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPD 122
Query: 89 -----SSKSVMISLAVLGSVSDYCAHHAHCTVMIVKRP 121
S +G+VS +C HA C VM +KR
Sbjct: 123 FLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRN 160
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 39.6 bits (91), Expect = 2e-05
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 40/157 (25%)
Query: 7 QTMVVGIDDSEHSTYALQWTLD---HFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAV 63
+ ++ D SE + AL+ + + R S ++G+AG
Sbjct: 4 KKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS 63
Query: 64 --EVLPHVDSDLKKIAARLVEEAKEICSSKSVMISLAV---------------------- 99
E + + L + A +E K+ + +
Sbjct: 64 VEEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIII 123
Query: 100 -------------LGSVSDYCAHHAHCTVMIVKRPKT 123
LGSV++ ++ V++VKR +
Sbjct: 124 MGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRKNS 160
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 147
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (91), Expect = 2e-05
Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 37/145 (25%)
Query: 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVL 66
+T+VVG D S+ S A+ A++ + ++ P
Sbjct: 6 KTVVVGTDGSDSSMRAVDRAAQIAGADAKL-----IIASAYLPQHEDARAADILKDESYK 60
Query: 67 PHVDSDLKKIAARLVEEAKEICSSKSVMISLA---------------------------- 98
+ + +I E A + +
Sbjct: 61 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 120
Query: 99 ----VLGSVSDYCAHHAHCTVMIVK 119
+LGSV + A V+IV
Sbjct: 121 IAGRLLGSVPANVSRRAKVDVLIVH 145
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]
Score = 35.6 bits (81), Expect = 4e-04
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 22/134 (16%)
Query: 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVL 66
+T+++ D SEH+ A + A+ A +E
Sbjct: 2 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERA 61
Query: 67 PHVDSDLKKIAARLVEEAKEICSSKSVMISLA----------------------VLGSVS 104
V + + + E+A + + I A LGS S
Sbjct: 62 EGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQS 121
Query: 105 DYCAHHAHCTVMIV 118
A C V++V
Sbjct: 122 QRVVAEAPCPVLLV 135
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]
Score = 35.4 bits (80), Expect = 6e-04
Identities = 14/136 (10%), Positives = 39/136 (28%), Gaps = 22/136 (16%)
Query: 7 QTMVVGIDDSEHSTYALQWTLDHFFAN-------STVNPPFKLVIVHARPSPSAVIGLAG 59
+ ++V +D SE S L+ + + L + S++
Sbjct: 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRIS 62
Query: 60 HGAVEVLPHVDSDLKKI----------AARLVEEAKEICSSKSVMI-----SLAVLGSVS 104
+ L + + +++ +A E ++ + L S +
Sbjct: 63 TETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSST 122
Query: 105 DYCAHHAHCTVMIVKR 120
+ +++V
Sbjct: 123 RQVMNTIKIDMLVVPL 138
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 125
d1mjha_ 160
"Hypothetical" protein MJ0577 {Archaeon Methanococ
99.91 d2z3va1 135
Hypothetical protein TTHA0895 {Thermus thermophilu
99.86 d1jmva_ 140
Universal stress protein A, UspA {Haemophilus infl
99.83 d2gm3a1 171
Putative ethylene-responsive protein AT3g01520/F4P
99.82 d1tq8a_ 147
Hypothetical protein Rv1636 {Mycobacterium tubercu
99.82 d1q77a_ 138
Hypothetical protein Aq_178 {Aquifex aeolicus [Tax
99.66 d1ni5a1 227
tRNA-Ile-lysidine synthetase, TilS, N-terminal dom
83.36
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=2.8e-24 Score=137.47 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCccccc--C----CCC----CcccchhHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGL--A----GHG----AVEVLPHVDSDL 73 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~--~----~~~----~~~~~~~~~~~~ 73 (125)
+||||||||+|+|+.|++|++||+.+|+.. + + +|+++||+++....... . ... ..+....+.+..
T Consensus 1 ~m~~~ILvavD~s~~s~~al~~a~~la~~~-~--a--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (160)
T d1mjha_ 1 VMYKKILYPTDFSETAEIALKHVKAFKTLK-A--E--EVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKL 75 (160)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHTCCSS-C--C--EEEEEEEEEGGGTC-----------------CHHHHHHHHHHH
T ss_pred CCcCeEEEEECCCHHHHHHHHHHHHHHHhc-C--C--EEEEEEecccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 589999999999999999999999999997 7 7 99999998765432211 0 001 111222333444
Q ss_pred HHHHHHHHHHHHHHhhhcCcc-----------------------------------cceeeeCcchHHHhccCCccEEEE
Q 033189 74 KKIAARLVEEAKEICSSKSVM-----------------------------------ISLAVLGSVSDYCAHHAHCTVMIV 118 (125)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~-----------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV 118 (125)
.+.+++.++.+.+.+...++. +.++++||++++|+++++||||+|
T Consensus 76 ~~~~~~~l~~~~~~~~~~gv~~~~~~~~G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~~pVlvV 155 (160)
T d1mjha_ 76 TEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVV 155 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEEeccHHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCCCCEEEE
Confidence 555566666666655554432 788999999999999999999999
Q ss_pred cCCC
Q 033189 119 KRPK 122 (125)
Q Consensus 119 ~~~~ 122 (125)
|++.
T Consensus 156 ~~~~ 159 (160)
T d1mjha_ 156 KRKN 159 (160)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9864
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=3.5e-21 Score=119.66 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=72.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAK 85 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (125)
||+||||+|+|+.|+.|++||+.+|+.. + + +|+++||+++.+.+.+. ...+...+...+.++..++++.
T Consensus 1 yk~Ilv~~D~s~~s~~a~~~a~~~a~~~-~--~--~l~ll~V~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~ 69 (135)
T d2z3va1 1 FKTILLAYDGSEHARRAAEVAKAEAEAH-G--A--RLIVVHAYEPVPDYLGE------PFFEEALRRRLERAEGVLEEAR 69 (135)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHH-T--C--EEEEEEEECCCCTTCCT------THHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHc-C--C--EEEEEEEecCCcccccc------chhHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999997 7 7 99999999865533211 1112222233334444444443
Q ss_pred HHhhh----------------------cCcc-----------cceeeeCcchHHHhccCCccEEEE
Q 033189 86 EICSS----------------------KSVM-----------ISLAVLGSVSDYCAHHAHCTVMIV 118 (125)
Q Consensus 86 ~~~~~----------------------~~~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV 118 (125)
..... .+++ +.++++||++++|+++++||||+|
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~ll~~~~~pVlvV 135 (135)
T d2z3va1 70 ALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV 135 (135)
T ss_dssp HHHCCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEESSCSSSCBCSSCBHHHHHHHHHCSSCEEEE
T ss_pred HhcCCCeEEEEEEcCChHHHHHHHhhhhheeeEEeccCCCCcccccccCcHHHHHHHhCCCCEEeC
Confidence 32111 1111 788999999999999999999997
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]
Probab=99.83 E-value=2.8e-21 Score=120.64 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=71.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEA 84 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (125)
||||||||+|+|+.++.|++||+.+|+.. + + +|+++||++.++......... ..+...++..+...+.++..
T Consensus 1 myk~ILv~vD~s~~s~~al~~A~~~a~~~-~--~--~v~~lhv~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 72 (140)
T d1jmva_ 1 MYKHILVAVDLSEESPILLKKAVGIAKRH-D--A--KLSIIHVDVNFSDLYTGLIDV---NMSSMQDRISTETQKALLDL 72 (140)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHH-T--C--EEEEEEEEECCGGGCCCCEEH---HHHHHTTCCCCHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHHc-C--C--eEEEEEEeeeccccccccccc---chHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999997 7 7 999999998765432211100 01111111111122222221
Q ss_pred HH----------------------HhhhcCcc--------cceeeeCcchHHHhccCCccEEEEcCCC
Q 033189 85 KE----------------------ICSSKSVM--------ISLAVLGSVSDYCAHHAHCTVMIVKRPK 122 (125)
Q Consensus 85 ~~----------------------~~~~~~~~--------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~ 122 (125)
.. .+.+.+++ -....+||++++++++++||||+||..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~I~~~a~~~~~dliV~G~~~~~~~~lgs~~~~li~~~~~pVliVp~~d 140 (140)
T d1jmva_ 73 AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPLRD 140 (140)
T ss_dssp HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEECCCCHHHHHHHHHHHHTTCCSEEEEEECCC
T ss_pred HHhcCCceEEEEEEecCHHHHHHHhhhhchhhEEEeccCCCCCCCcccHHHHHHhccCCCEEEEecCC
Confidence 11 11122221 2234589999999999999999999864
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.82 E-value=1.6e-20 Score=121.28 Aligned_cols=115 Identities=23% Similarity=0.409 Sum_probs=69.4
Q ss_pred CCeEEEEeCCCh---------HHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCC--CCCcccchhHHHHHH
Q 033189 6 TQTMVVGIDDSE---------HSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAG--HGAVEVLPHVDSDLK 74 (125)
Q Consensus 6 ~~~IlvavD~s~---------~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 74 (125)
.+|||||||+|. .|++|++||+.++.+. + +....|+++||.+.......... ....+......+...
T Consensus 1 p~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~-~-~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (171)
T d2gm3a1 1 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRS-N-TSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNK 78 (171)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTT-C-TTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHH
T ss_pred CCEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHC-C-CCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHH
Confidence 368999999986 8999999999998875 4 12236999999876543322111 111112222233344
Q ss_pred HHHHHHHHHHHHHhhhcCcc-----------------------------------cceeeeCcchHHHhccCCccEEEEc
Q 033189 75 KIAARLVEEAKEICSSKSVM-----------------------------------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~-----------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
+...++++.+...+...++. +.++++||++++|+++++||||+||
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~lGSv~~~vi~~~~cpVlvV~ 158 (171)
T d2gm3a1 79 AKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 158 (171)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHHHHHHhhcCCcEEEeccCCccccccCccCcHHHHHHhCCCCCEEEEe
Confidence 45566666666666544422 7888999999999999999999999
Q ss_pred CCC
Q 033189 120 RPK 122 (125)
Q Consensus 120 ~~~ 122 (125)
+..
T Consensus 159 ~~~ 161 (171)
T d2gm3a1 159 RNA 161 (171)
T ss_dssp CCG
T ss_pred CCC
Confidence 863
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=2e-20 Score=117.58 Aligned_cols=108 Identities=24% Similarity=0.188 Sum_probs=65.6
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEA 84 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (125)
.||+||||+|+|+.++.|++||+.+++.. + .+.++|++.+........... ..+.......+..++.++.+
T Consensus 4 ~yk~ILv~vD~s~~s~~al~~A~~la~~~-~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 74 (147)
T d1tq8a_ 4 AYKTVVVGTDGSDSSMRAVDRAAQIAGAD-A-----KLIIASAYLPQHEDARAADIL---KDESYKVTGTAPIYEILHDA 74 (147)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHTTT-S-----EEEEEEECCC-----------------------CCTHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHhcC-C-----CEEEEEEEecccccccccccc---hhhhHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999875 4 555555544433222111111 01111222222334444444
Q ss_pred HHHhhhcCcc------------------------------------cceeeeCcchHHHhccCCccEEEEcCC
Q 033189 85 KEICSSKSVM------------------------------------ISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 85 ~~~~~~~~~~------------------------------------~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
++.+.+.++. +.++++||++++|+++++||||+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~G~~~~~i~~~a~~~~~dlIv~g~~~~~~~~~~l~Gs~~~~ll~~~~~pVlvV~~~ 147 (147)
T d1tq8a_ 75 KERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT 147 (147)
T ss_dssp HHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHcCCCcEEEEEEecChHHHHHHhhhccceeEEEecCCCCCcccccccccHHHHHHHhCCCCEEEEecC
Confidence 4443332211 678899999999999999999999863
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]
Probab=99.66 E-value=5e-17 Score=100.55 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=71.8
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH
Q 033189 3 TAETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE 82 (125)
Q Consensus 3 ~~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (125)
+.++|+||||+|+|+.|++|++||..+|+.. + + +|+++||+++....................+...+...+.++
T Consensus 1 ~~~mk~ILv~~D~S~~s~~al~~A~~~a~~~-~--a--~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~ 75 (138)
T d1q77a_ 1 SNAMKVLLVLTDAYSDCEKAITYAVNFSEKL-G--A--ELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLR 75 (138)
T ss_dssp CCCCEEEEEEESTTCCCHHHHHHHHHHHTTT-C--C--EEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeCCHHHHHHHHHHHHhhhhc-c--c--eEEEEEEccCcccccccccccccchhhhhhhhhhhhccccch
Confidence 3578999999999999999999999999997 8 7 999999987543221110000011223334444444455555
Q ss_pred HHHHHhhhcCcc----------------------cceeeeC----cchHHHhccCCccEEEEc
Q 033189 83 EAKEICSSKSVM----------------------ISLAVLG----SVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 83 ~~~~~~~~~~~~----------------------~~~~~~G----s~s~~vl~~a~~pVlvV~ 119 (125)
.+.+.+...+.. ..=.++| |...+++..++||+|+|+
T Consensus 76 ~~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~Gs~g~~~l~r~l~g~~~~~livk 138 (138)
T d1q77a_ 76 EVWEKLTGSTEIPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPSAYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHHHHHHSCCCCCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCGGGTHHHHHHSSSEEEECC
T ss_pred hhcccccccceeEEEeeecchhHHHHHHhhhhccCCEEEEecCCCcHHHHHhcCCCCCEEEeC
Confidence 544433332221 2223333 667789999999999986
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=83.36 E-value=1.8 Score=27.04 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..++|+||+.|...|...+.....+.....+ . ++.++|+-.
T Consensus 12 ~~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~--~--~l~~~~vdh 52 (227)
T d1ni5a1 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPG--V--ALRAIHVHH 52 (227)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTT--C--EEEEEEECC
T ss_pred CCCcEEEEecCcHHHHHHHHHHHHHHHhCCC--c--eEEEEEeCC
Confidence 3589999999999999888877777654313 5 999999853
