Citrus Sinensis ID: 033196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVPIPKQSMTAMETQKA
Secondary Structure (PSIPRED)
ccccccEEEEcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHEEEccHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccHccccccccccccccccEEEEcccccccccccccccccccccEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
mqkrgpvfvtaFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKeyeenkietipepikscgehghtlAIIDDIEANNHTQLQKIesetnkpavtisvpipkqsmtamETQKA
Flexible Loop (DISEMBL)
MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKiesetnkpavtisvpipkqsmtametqka
Low Complexity Region (SEG)
MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYvggalgavviviglYAVLWGKYKEYEENKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVPIPKQSMTAMETQKA
Disordered region (IsUnstruct)
******VFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENKIETIPEPIKSCGEHGHTLAIIDDIEA*************************************
Disordered Region (DISOPRED)
***RGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG************************************************************************
Disordered Region (DISEMBL)
MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVPIPKQ**********
Disordered Region (DISPRO)
***RGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE*********************TLAIIDDIE***************KPAVTISVPIPKQ**********
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVPIPKQSMTAMETQKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q9FL41	402	WAT1-related protein At5g	yes	no	0.824	0.256	0.548	2e-23
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.488	0.160	0.672	3e-17
F4IQX1	336	WAT1-related protein At2g	no	no	0.472	0.175	0.661	1e-16
O80638	374	WAT1-related protein At2g	no	no	0.456	0.152	0.684	1e-16
F4IJ08	394	WAT1-related protein At2g	no	no	0.64	0.203	0.493	2e-16
Q9FNA5	377	WAT1-related protein At5g	no	no	0.824	0.273	0.409	5e-16
Q9SUF1	384	WAT1-related protein At4g	no	no	0.68	0.221	0.451	3e-15
Q9LPF1	370	WAT1-related protein At1g	no	no	0.504	0.170	0.546	2e-14
Q501F8	373	WAT1-related protein At4g	no	no	0.456	0.152	0.561	1e-13
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.888	0.270	0.381	8e-13

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 10/113 (8%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           M+KRGPVF TAFSPLMM+IVA+MGSF+LAEKI++GG +GAV+IVIGLYAVLWGK K   E
Sbjct: 287 MKKRGPVFATAFSPLMMVIVAVMGSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQK---E 343

Query: 61  NKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVPIP 113
           N++ TI E  K       T    +D+EAN      KI    N    TI + +P
Sbjct: 344 NQV-TICELAKIDSNSKVT----EDVEANGSK--MKISEGDNSMLSTIVISVP 389

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 49/61 (80%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           M+ RGPVFVTAFSPL MIIVAIM + I AE++Y+G  LGAVVI  GLY V+WGK K+Y+ 
Sbjct: 275 MKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKY 334

Query: 61  N 61
           N
Sbjct: 335 N 335

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQX1|WTR12_ARATH WAT1-related protein At2g37450 OS=Arabidopsis thaliana GN=At2g37450 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYE 59
           M+ RGPVFVTAF PL MI+VAIM S I  E++Y+G ALGA VI +GLY V+WGK K+YE
Sbjct: 248 MKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYLVIWGKAKDYE 306

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 50/57 (87%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57
           M+ RGPVFVTAF+PL M+IVAI+GS ILAE +++G  LGA+VIV+GLY+VLWGK K+
Sbjct: 270 MKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKD 326

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 62/83 (74%), Gaps = 3/83 (3%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKY--KEY 58
           MQ++GPVFVTAF+PL+++IV+IM  F+L + IY+GG +G VV+++G+YAVLWGK+   + 
Sbjct: 267 MQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGIYLGGVIGVVVLMVGVYAVLWGKHVDDDG 326

Query: 59  EENKIETIPEPIKSC-GEHGHTL 80
           EE + E     +K C G +G T+
Sbjct: 327 EETRHEDNVVAVKCCSGNNGLTI 349

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 19/122 (15%)

Query: 2   QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEEN 61
           ++RGPVFV+AF+PL M++VAI+ +F+  EK+YVG  +G+VVIVIG+Y VLWGK K+    
Sbjct: 273 KERGPVFVSAFNPLSMVLVAILSTFVFLEKVYVGRVIGSVVIVIGIYLVLWGKSKDKGG- 331

Query: 62  KIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTIS--VPIPKQSMTA 119
               + +P   C E   T+  ID          QK+ +  N   V+IS  + IPK +  +
Sbjct: 332 ----MLQPNAGCAE---TVVKIDQ---------QKVPTPDNNQVVSISYHLMIPKAAARS 375

Query: 120 ME 121
            E
Sbjct: 376 QE 377

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 8/93 (8%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEY-- 58
           M+ RGPVFVTAF+PL MI+VA++ SFIL E+I+ G  +G  VI  GLY V+WGK K+Y  
Sbjct: 276 MKTRGPVFVTAFNPLCMILVALIASFILHEQIHFGCVIGGAVIAAGLYMVVWGKGKDYEV 335

Query: 59  ------EENKIETIPEPIKSCGEHGHTLAIIDD 85
                 E+N ++ +P   KS  ++    +I D+
Sbjct: 336 SGLDILEKNSLQELPITTKSEDDNKLVSSISDN 368

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 52/64 (81%), Gaps = 1/64 (1%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           +++RGPVF T+FSP+ MII A +G+ +LAEKI++G  +GAV IV+GLY+V+WGK K+ E 
Sbjct: 272 IKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKD-EV 330

Query: 61  NKIE 64
           N ++
Sbjct: 331 NPLD 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 46/57 (80%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE 57
           +++RGPVF T+FSP+ MII A +G  +LAEKI++G  +GA+ IV GLY+V+WGK K+
Sbjct: 275 IRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVWGKAKD 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 7/118 (5%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYE- 59
           + + GPVFV  + P+  I VAIM S IL E+ Y+GG  GA++I+IGLY VLWGK +E   
Sbjct: 287 IDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRL 346

Query: 60  ---ENKIETIPEPIKSCGEHGHTLAI--IDDIEANNHTQL-QKIESETNKPAVTISVP 111
              + K   +PE      +   TL I   + I+ N  + L Q +  +T+   V I  P
Sbjct: 347 GLLQAKSSMVPENQPDNMDQSATLIINSSNGIKPNTSSSLTQPLLLDTSYKTVNIPSP 404

Pinus taeda (taxid: 3352)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
224089909	375	predicted protein [Populus trichocarpa]	0.808	0.269	0.732	3e-36
225440165	396	PREDICTED: auxin-induced protein 5NG4 is	0.896	0.282	0.635	4e-33
296087806	362	unnamed protein product [Vitis vinifera]	0.984	0.339	0.587	8e-31
225464037	403	PREDICTED: auxin-induced protein 5NG4 is	0.984	0.305	0.587	9e-31
359487123	412	PREDICTED: auxin-induced protein 5NG4 [V	0.984	0.298	0.587	9e-31
356571882	392	PREDICTED: auxin-induced protein 5NG4-li	0.88	0.280	0.594	2e-30
363806702	393	uncharacterized protein LOC100811617 [Gl	0.88	0.279	0.589	3e-29
224057224	407	predicted protein [Populus trichocarpa]	0.984	0.302	0.544	3e-28
52851168	216	nodulin-like protein [Plantago major]	1.0	0.578	0.619	4e-28
255569157	415	Auxin-induced protein 5NG4, putative [Ri	0.984	0.296	0.541	5e-28

>gi|224089909|ref|XP_002308862.1| predicted protein [Populus trichocarpa] gi|222854838|gb|EEE92385.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 85/101 (84%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           MQKRGPVFVTAFSPLMMIIVAIMGSFILAE IYVGG LGA++IV GLYAVLWGKYKE++E
Sbjct: 272 MQKRGPVFVTAFSPLMMIIVAIMGSFILAENIYVGGILGAILIVAGLYAVLWGKYKEHKE 331

Query: 61  NKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESET 101
            + ETIPEPIK  GE+GHT  +I DIEANN  + Q+ ++  
Sbjct: 332 KEAETIPEPIKENGENGHTAGMIQDIEANNDIERQRNQANN 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440165|ref|XP_002283348.1| PREDICTED: auxin-induced protein 5NG4 isoform 1 [Vitis vinifera] gi|297741692|emb|CBI32824.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 6/118 (5%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKI++GG +GAV+IV GLY+VLWGKYKE++E
Sbjct: 280 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIFLGGVIGAVLIVAGLYSVLWGKYKEFKE 339

Query: 61  NKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNK---PAVTI-SVPIPK 114
            + ETIPE IK  GE+G    ++++ E +N  ++QK  S+ NK   PAV + SV  PK
Sbjct: 340 KEAETIPEAIKGAGENGGMKTVMEETEEDNDIEMQK--SQANKLSTPAVAVQSVEAPK 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087806|emb|CBI35062.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 96/126 (76%), Gaps = 3/126 (2%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE-YE 59
           ++ RGPVF TAFSPLMMIIVAIMGSFILAEKI++GG LGA++IV GLY+VLWGKYKE  E
Sbjct: 239 IKSRGPVFATAFSPLMMIIVAIMGSFILAEKIFLGGVLGAILIVAGLYSVLWGKYKENLE 298

Query: 60  ENKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVPIPKQSMTA 119
           + + E IPE IK    +G+ L+IIDDI+ N+  ++QK E++    +V IS+PIP+  M A
Sbjct: 299 KKQEEEIPEAIKGAQGNGNGLSIIDDIQTND-IEMQKAEAK-KLSSVAISMPIPEPPMKA 356

Query: 120 METQKA 125
            +  KA
Sbjct: 357 NQDPKA 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464037|ref|XP_002267371.1| PREDICTED: auxin-induced protein 5NG4 isoform 1 [Vitis vinifera]

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 96/126 (76%), Gaps = 3/126 (2%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE-YE 59
           ++ RGPVF TAFSPLMMIIVAIMGSFILAEKI++GG LGA++IV GLY+VLWGKYKE  E
Sbjct: 280 IKSRGPVFATAFSPLMMIIVAIMGSFILAEKIFLGGVLGAILIVAGLYSVLWGKYKENLE 339

Query: 60  ENKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVPIPKQSMTA 119
           + + E IPE IK    +G+ L+IIDDI+ N+  ++QK E++    +V IS+PIP+  M A
Sbjct: 340 KKQEEEIPEAIKGAQGNGNGLSIIDDIQTND-IEMQKAEAK-KLSSVAISMPIPEPPMKA 397

Query: 120 METQKA 125
            +  KA
Sbjct: 398 NQDPKA 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487123|ref|XP_003633520.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 96/126 (76%), Gaps = 3/126 (2%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE-YE 59
           ++ RGPVF TAFSPLMMIIVAIMGSFILAEKI++GG LGA++IV GLY+VLWGKYKE  E
Sbjct: 289 IKSRGPVFATAFSPLMMIIVAIMGSFILAEKIFLGGVLGAILIVAGLYSVLWGKYKENLE 348

Query: 60  ENKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVPIPKQSMTA 119
           + + E IPE IK    +G+ L+IIDDI+ N+  ++QK E++    +V IS+PIP+  M A
Sbjct: 349 KKQEEEIPEAIKGAQGNGNGLSIIDDIQTND-IEMQKAEAK-KLSSVAISMPIPEPPMKA 406

Query: 120 METQKA 125
            +  KA
Sbjct: 407 NQDPKA 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571882|ref|XP_003554100.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 87/111 (78%), Gaps = 1/111 (0%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           MQK+GPVFVTAFSPLMMIIVAIMG+FILAEKIY+GG +GA++IV+GLY+VLWGK+KE +E
Sbjct: 281 MQKKGPVFVTAFSPLMMIIVAIMGAFILAEKIYLGGVVGAILIVMGLYSVLWGKHKENKE 340

Query: 61  NKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVP 111
            + ET  E +K C E+G    +++D E NN  ++QK E+ + +  V IS P
Sbjct: 341 KEAETTMEVMKCCSENGRLETVVEDAETNNDIEMQKGEA-SRELRVVISAP 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806702|ref|NP_001242267.1| uncharacterized protein LOC100811617 [Glycine max] gi|255639299|gb|ACU19947.1| unknown [Glycine max]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 2/112 (1%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           MQK+GPVFVTAFSPLMMIIVAIMG+FILAEKIY+GG +GA++IV+GLY+VLWGK+KE +E
Sbjct: 281 MQKKGPVFVTAFSPLMMIIVAIMGTFILAEKIYLGGVIGAILIVMGLYSVLWGKHKENKE 340

Query: 61  NKIETIPEPIKSCGEHGHTL-AIIDDIEANNHTQLQKIESETNKPAVTISVP 111
            + E   E +K C E+G  L  +++D E NN  ++QK E+ + +  V I VP
Sbjct: 341 KEAEITIEVLKCCSENGMRLETVVEDAETNNDIEMQKGEA-SRELRVAIGVP 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057224|ref|XP_002299181.1| predicted protein [Populus trichocarpa] gi|222846439|gb|EEE83986.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 93/125 (74%), Gaps = 2/125 (1%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           ++K+GPVF TAFSPLMMIIVAIMGSFILAEKI++GG +G+V+IVIGLY+VLWGK+KE  E
Sbjct: 281 IKKKGPVFATAFSPLMMIIVAIMGSFILAEKIFLGGIVGSVLIVIGLYSVLWGKHKEKME 340

Query: 61  NKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESE-TNKPAVTISVPIPKQSMTA 119
              E IPEP+K    +G+++ +I+DIEA N  +LQK +   +N  A  +S+P+    +  
Sbjct: 341 IDPEEIPEPVKGVQGNGNSMLVIEDIEA-NEVKLQKAKPAISNFSATAMSMPMALPGLPI 399

Query: 120 METQK 124
            E Q+
Sbjct: 400 KENQE 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851168|emb|CAH58632.1| nodulin-like protein [Plantago major]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 92/126 (73%), Gaps = 1/126 (0%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           MQKRGPVFVTAFSPLMMIIVAIMGSFILAE IY+GG LGAV+IVIGLY+VLWGKYKEY+E
Sbjct: 91  MQKRGPVFVTAFSPLMMIIVAIMGSFILAENIYLGGVLGAVLIVIGLYSVLWGKYKEYKE 150

Query: 61  NKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIES-ETNKPAVTISVPIPKQSMTA 119
            + E IPEP+K    + +   I +DIEAN   + +K E    + PA+ IS P+P   M A
Sbjct: 151 KEAEEIPEPMKGISGNNNMGTIDEDIEANIIVECEKHECRRMSFPAIAISSPMPNPPMLA 210

Query: 120 METQKA 125
               KA
Sbjct: 211 KLAPKA 216

Source: Plantago major

Species: Plantago major

Genus: Plantago

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569157|ref|XP_002525547.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223535126|gb|EEF36806.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 95/131 (72%), Gaps = 8/131 (6%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYE- 59
           ++KRGPVF TAFSPLMMI+VAIMGSFILAEKI++GG +GAV+IVIGLYAVLWGK+KE   
Sbjct: 287 IKKRGPVFATAFSPLMMIVVAIMGSFILAEKIFLGGVIGAVLIVIGLYAVLWGKHKERMV 346

Query: 60  ENKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKP-----AVTISVPIPK 114
           ++  E I +P+K    +G+++A I DIEA N   LQK+E+  N       A+T+ +PIP+
Sbjct: 347 QDSDEEILDPVKGVQGNGNSVA-IQDIEA-NEVDLQKVEANNNNNKLSAMAITMPMPIPE 404

Query: 115 QSMTAMETQKA 125
             +   +  KA
Sbjct: 405 LPIKVSQDPKA 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.824	0.256	0.451	1.1e-15
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.88	0.279	0.373	2.7e-12
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.488	0.160	0.524	1.1e-10
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.528	0.171	0.454	3.1e-10
TAIR|locus:2049837	336	UMAMIT13 "Usually multiple aci	0.472	0.175	0.508	3.7e-10
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.456	0.152	0.526	7.9e-10
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.504	0.170	0.421	7.5e-09
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.68	0.227	0.352	1.3e-08
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.448	0.148	0.446	1.3e-08
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.752	0.252	0.343	2.7e-08

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 51/113 (45%), Positives = 63/113 (55%)

Query:     1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKEYEE 60
             M+KRGPVF TAFSPLMM+IVA+MGSF+LAEKI+              YAVLWGK KE   
Sbjct:   287 MKKRGPVFATAFSPLMMVIVAVMGSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQKE--- 343

Query:    61 NKIETIPEPIKSCGEHGHTLAIIDDIEANNHTQLQKIESETNKPAVTISVPIP 113
             N++ TI E  K          + +D+EAN      KI    N    TI + +P
Sbjct:   344 NQV-TICELAKIDSNS----KVTEDVEANGSKM--KISEGDNSMLSTIVISVP 389

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 43/115 (37%), Positives = 64/115 (55%)

Query:     1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKY--KEY 58
             MQ++GPVFVTAF+PL+++IV+IM  F+L + IY              YAVLWGK+   + 
Sbjct:   267 MQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGIYLGGVIGVVVLMVGVYAVLWGKHVDDDG 326

Query:    59 EENKIETIPEPIKSC-GEHGHTLAI-IDDIEANN-HTQLQKIESETNKPAVTISV 110
             EE + E     +K C G +G T+   ID+ +  +  T     E E++ P V + V
Sbjct:   327 EETRHEDNVVAVKCCSGNNGLTIMPKIDEADEEDVETGKATSEKESSVPEVVVVV 381

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query:     1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKEYEE 60
             M+ RGPVFVTAFSPL MIIVAIM + I AE++Y              Y V+WGK K+Y+ 
Sbjct:   275 MKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKY 334

Query:    61 N 61
             N
Sbjct:   335 N 335

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 30/66 (45%), Positives = 43/66 (65%)

Query:     1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKEYEE 60
             M+ RGPVFVTAF+PL MI+VA++ SFIL E+I+              Y V+WGK K+YE 
Sbjct:   276 MKTRGPVFVTAFNPLCMILVALIASFILHEQIHFGCVIGGAVIAAGLYMVVWGKGKDYEV 335

Query:    61 NKIETI 66
             + ++ +
Sbjct:   336 SGLDIL 341

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049837 UMAMIT13 "Usually multiple acids move in and out Transporters 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 30/59 (50%), Positives = 36/59 (61%)

Query:     1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKEYE 59
             M+ RGPVFVTAF PL MI+VAIM S I  E++Y              Y V+WGK K+YE
Sbjct:   248 MKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYLVIWGKAKDYE 306

GO:0016020 "membrane" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 30/57 (52%), Positives = 38/57 (66%)

Query:     1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKE 57
             M+ RGPVFVTAF+PL M+IVAI+GS ILAE ++              Y+VLWGK K+
Sbjct:   270 MKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKD 326

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 7.5e-09, P = 7.5e-09
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query:     1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKEYEE 60
             +++RGPVF T+FSP+ MII A +G+ +LAEKI+              Y+V+WGK K+ E 
Sbjct:   272 IKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKD-EV 330

Query:    61 NKIE 64
             N ++
Sbjct:   331 NPLD 334

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 31/88 (35%), Positives = 47/88 (53%)

Query:     1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKEYEE 60
             MQ++GP++V+ FSPL++++VAI    +L EK+Y              Y VLWGK +E  E
Sbjct:   273 MQRKGPLYVSVFSPLLLVVVAIFSWALLEEKLYTGTFMGSALVVIGLYGVLWGKDREVSE 332

Query:    61 NKIETIPEPIKSCGEHGHTLAIIDDIEA 88
              + E   E +K    H       +DIE+
Sbjct:   333 KEEER--EKVKQ-QNHKVKSESNEDIES 357

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query:     2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKE 57
             ++RGPVFV+AF+PL M++VAI+ +F+  EK+Y              Y VLWGK K+
Sbjct:   273 KERGPVFVSAFNPLSMVLVAILSTFVFLEKVYVGRVIGSVVIVIGIYLVLWGKSKD 328

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 34/99 (34%), Positives = 50/99 (50%)

Query:     1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKEYE- 59
             +++RGPVF T+FSP+ MII A +G  +LAEKI+              Y+V+WGK K+   
Sbjct:   275 IRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVWGKAKDEVI 334

Query:    60 --ENKIETIPEPIKSCGEHGHTLAIIDDIE--ANNHTQL 94
               E KI     PI +         I  ++     N+TQ+
Sbjct:   335 SVEEKIGMQELPITNTSTKVEGGGITSEVNEGVTNNTQV 373

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	1e-10
pfam00892	126	pfam00892, EamA, EamA-like transporter family	2e-04

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 23/72 (31%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEE 60
           ++ +GP+++  F PL ++I  +MG+  L + +Y+G  +G ++I +G YAV+WGK  E E+
Sbjct: 277 VRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE-EK 335

Query: 61  NKIETIPEPIKS 72
           +++ +     K+
Sbjct: 336 DQLLSFSGKEKT 347

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 1   MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW 52
           ++       +  + L  +   I+   +L EK+ +   LG V+I++G+  +L 
Sbjct: 75  LKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PLN00411	358	nodulin MtN21 family protein; Provisional	99.16
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.06
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.05
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.97
PRK11689	295	aromatic amino acid exporter; Provisional	97.93
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.79
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.68
PRK11272	292	putative DMT superfamily transporter inner membran	97.65
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.46
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.37
PRK15430	296	putative chloramphenical resistance permease RarD;	97.35
COG2510	140	Predicted membrane protein [Function unknown]	97.34
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.18
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.95
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.79
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.56
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.32
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.22
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.18
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.17
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	95.92
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.43
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.35
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.11
PRK15430	296	putative chloramphenical resistance permease RarD;	95.06
PRK10650	109	multidrug efflux system protein MdtI; Provisional	94.86
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	94.84
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	94.8
PRK11431	105	multidrug efflux system protein; Provisional	94.45
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.17
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	94.01
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	93.96
PRK11689	295	aromatic amino acid exporter; Provisional	93.86
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	93.66
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	93.63
PLN00411	358	nodulin MtN21 family protein; Provisional	93.18
COG2076	106	EmrE Membrane transporters of cations and cationic	93.08
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	92.61
PRK11272	292	putative DMT superfamily transporter inner membran	92.3
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.02
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	91.97
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	91.38
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	91.08
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	90.75
KOG1580	337	consensus UDP-galactose transporter related protei	87.95
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	87.56
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	85.23
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	85.07
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	84.0
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	82.9
KOG4510	346	consensus Permease of the drug/metabolite transpor	80.47

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.16  E-value=1.1e-11  Score=104.25  Aligned_cols=62  Identities=34%  Similarity=0.902  Sum_probs=58.1

Q ss_pred             CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhhh
Q 033196            1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENK   62 (125)
Q Consensus         1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~   62 (125)
                      ++++||+.+|+|.++.|++++++++++|||++++.+++|+++|+.|+|++.|+|.||.+.++
T Consensus       277 v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~  338 (358)
T PLN00411        277 VRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQL  338 (358)
T ss_pred             HhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence            57899999999999999999999999999999999999999999999999999998865543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.06  E-value=3.9e-07  Score=72.79  Aligned_cols=58  Identities=12%  Similarity=0.211  Sum_probs=53.0

Q ss_pred             CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhh
Q 033196            1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEY   58 (125)
Q Consensus         1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~   58 (125)
                      +++.||+..+++.-+.++++++++++++||++++.+++|+++++.|+++..+.|.++.
T Consensus       242 l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~  299 (302)
T TIGR00817       242 LGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP  299 (302)
T ss_pred             HccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence            4688999999999999999999999999999999999999999999999887665443

specificities overlap.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.05  E-value=1.2e-06  Score=70.38  Aligned_cols=61  Identities=11%  Similarity=0.065  Sum_probs=54.1

Q ss_pred             CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhh
Q 033196            1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEEN   61 (125)
Q Consensus         1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~   61 (125)
                      +++.||..+|+|.-+.+++++++++++|||+++.-+++|+++|+.|.....|...+|.+-+
T Consensus       230 ~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~  290 (293)
T PRK10532        230 LTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIK  290 (293)
T ss_pred             HHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            3678999999999999999999999999999999999999999999998877766654443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.97  E-value=2.2e-06  Score=68.84  Aligned_cols=54  Identities=26%  Similarity=0.341  Sum_probs=51.4

Q ss_pred             cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecch
Q 033196            2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKY   55 (125)
Q Consensus         2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~   55 (125)
                      ++.||..++.+.-+.|++++++++++|||++++.+++|+++|+.|+++..|+++
T Consensus       237 ~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        237 GRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            567899999999999999999999999999999999999999999999999886

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.93  E-value=2.8e-06  Score=68.23  Aligned_cols=54  Identities=9%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196            1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK   54 (125)
Q Consensus         1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK   54 (125)
                      +++.||..+++|.-+.|++++++++++|||+++..+++|+++|+.|+++..|..
T Consensus       236 l~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        236 ILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            367899999999999999999999999999999999999999999999986644

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.79  E-value=8.1e-06  Score=55.05  Aligned_cols=50  Identities=22%  Similarity=0.357  Sum_probs=46.9

Q ss_pred             cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhee
Q 033196            2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVL   51 (125)
Q Consensus         2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl   51 (125)
                      ++.+|..++++..+.+++++++++++++|+++..+++|.++++.|+++++
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.68  E-value=2.8e-05  Score=61.83  Aligned_cols=49  Identities=22%  Similarity=0.451  Sum_probs=46.2

Q ss_pred             cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196            2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV   50 (125)
Q Consensus         2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv   50 (125)
                      ++.||..++.+.-+.+++++++++++|||+++..+++|+++|+.|+++.
T Consensus       233 ~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       233 TRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             hhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            5778999999999999999999999999999999999999999999863

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.65  E-value=1.3e-05  Score=64.11  Aligned_cols=54  Identities=22%  Similarity=0.319  Sum_probs=50.5

Q ss_pred             cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecch
Q 033196            2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKY   55 (125)
Q Consensus         2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~   55 (125)
                      ++.||..++++.-+.+++++++++++++|+++..+++|+++|+.|+++..|.+.
T Consensus       235 ~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        235 RNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            577899999999999999999999999999999999999999999999887654

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.46  E-value=5e-05  Score=56.25  Aligned_cols=54  Identities=15%  Similarity=0.174  Sum_probs=41.9

Q ss_pred             ccCceeeechhhHHHHHHHHHHHH--Hhhhhhhhhhhcchhhhhhhhhheeecchh
Q 033196            3 KRGPVFVTAFSPLMMIIVAIMGSF--ILAEKIYVGGALGAVVIVIGLYAVLWGKYK   56 (125)
Q Consensus         3 kkGPvfvs~F~PL~~V~~aIl~~l--fLgE~L~lGsiiGavLIi~GlYlvlwgK~k   56 (125)
                      +.++..+..+.-+..++++++++.  +|+|++++.+++|.++|++|++++.+++.+
T Consensus        71 ~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         71 YLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            445555555555555667777774  899999999999999999999999876665

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.37  E-value=6e-05  Score=62.72  Aligned_cols=53  Identities=17%  Similarity=0.230  Sum_probs=49.4

Q ss_pred             CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196            1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG   53 (125)
Q Consensus         1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg   53 (125)
                      +++.+|+-.++++.+.++++++++++++||++++-+++|.++++.|++++.+-
T Consensus       297 l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        297 LGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            46789999999999999999999999999999999999999999999987654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.35  E-value=6.7e-05  Score=60.35  Aligned_cols=51  Identities=10%  Similarity=0.027  Sum_probs=46.6

Q ss_pred             CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhee
Q 033196            1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVL   51 (125)
Q Consensus         1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl   51 (125)
                      +++.||..+|.|.-+.++++++++++++||++++.+++|.++|+.|+-+..
T Consensus       234 ~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        234 ATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999999999987776654

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.34  E-value=0.00012  Score=56.05  Aligned_cols=47  Identities=21%  Similarity=0.359  Sum_probs=42.5

Q ss_pred             ceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196            6 PVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW   52 (125)
Q Consensus         6 Pvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw   52 (125)
                      .+.+..-+.++++++++++++||+|++++-..+|.+||++|..++..
T Consensus        93 as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          93 ASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             cceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            45667778899999999999999999999999999999999988764

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.18  E-value=0.00015  Score=50.88  Aligned_cols=51  Identities=24%  Similarity=0.459  Sum_probs=45.4

Q ss_pred             ceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchh
Q 033196            6 PVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYK   56 (125)
Q Consensus         6 Pvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~k   56 (125)
                      |..+++-..+.++|++++++++++|.++...++|.+++.+|+.++.|.+..
T Consensus        60 ~~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   60 PALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            345666677899999999999999999999999999999999999997754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.95  E-value=0.00042  Score=53.24  Aligned_cols=47  Identities=15%  Similarity=0.338  Sum_probs=44.2

Q ss_pred             CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhh
Q 033196            1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGL   47 (125)
Q Consensus         1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~Gl   47 (125)
                      +++.||..++.+.-+.+++++++++++++|+++..+++|.++++.|+
T Consensus       213 ~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       213 LTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            36778999999999999999999999999999999999999999986

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.79  E-value=0.00067  Score=48.44  Aligned_cols=52  Identities=15%  Similarity=0.335  Sum_probs=48.3

Q ss_pred             CcccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196            1 MQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW   52 (125)
Q Consensus         1 I~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw   52 (125)
                      +++.+|+..++-..+-.+++.++++++++|+++..+++|.++.+.|.++..|
T Consensus       102 i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen  102 IKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             hhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            4678899999999999999999999999999999999999999999998765

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.56  E-value=0.0017  Score=46.54  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhee
Q 033196           15 LMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVL   51 (125)
Q Consensus        15 L~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl   51 (125)
                      ++.++++++++++++|++++.+++|.++|++|+.++.
T Consensus        72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999997653

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.32  E-value=0.0016  Score=49.44  Aligned_cols=52  Identities=25%  Similarity=0.415  Sum_probs=47.3

Q ss_pred             cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196            2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG   53 (125)
Q Consensus         2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg   53 (125)
                      ++.++...+++.-+.+++++++++++++|.++..+++|+++|+.|.++....
T Consensus       237 ~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         237 RLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            4567888888888999999999999999999999999999999999998876

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.22  E-value=0.0042  Score=52.72  Aligned_cols=67  Identities=18%  Similarity=0.098  Sum_probs=53.0

Q ss_pred             ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhhhccCCCcC
Q 033196            3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENKIETIPEP   69 (125)
Q Consensus         3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~~~~~~~~   69 (125)
                      ..+|.+..+=.-.+..++.+++.++.|+.+++-.++|-++|++|+.+..+...++.++.+++..+..
T Consensus       256 ~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~~~~~~~~~  322 (334)
T PF06027_consen  256 MSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEARRNERKQEL  322 (334)
T ss_pred             hCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccchhhccccc
Confidence            4566666666666678889999999999999999999999999999999988877665554333333

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.18  E-value=0.0037  Score=46.18  Aligned_cols=44  Identities=11%  Similarity=0.325  Sum_probs=38.2

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196           11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK   54 (125)
Q Consensus        11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK   54 (125)
                      ++.-+..+.+++++.++++|++++.+++|-++|++|+..+-...
T Consensus        62 vw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         62 LWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            35567889999999999999999999999999999998874433

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.17  E-value=0.003  Score=50.26  Aligned_cols=49  Identities=22%  Similarity=0.287  Sum_probs=43.9

Q ss_pred             CceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196            5 GPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG   53 (125)
Q Consensus         5 GPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg   53 (125)
                      ....++.+....+++++++++++++|.++..+++|.++++.|++++.+.
T Consensus        88 ~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        88 DVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             ChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            4455677788899999999999999999999999999999999998874

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=95.92  E-value=0.0038  Score=47.97  Aligned_cols=51  Identities=16%  Similarity=0.035  Sum_probs=45.5

Q ss_pred             ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196            3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG   53 (125)
Q Consensus         3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg   53 (125)
                      ..++..+++..-+.|++++++++++++|+++..+++|.++.+.|+.++.+.
T Consensus        70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            345667788888999999999999999999999999999999999998754

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.43  E-value=0.011  Score=42.77  Aligned_cols=42  Identities=10%  Similarity=0.312  Sum_probs=36.9

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196           12 FSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG   53 (125)
Q Consensus        12 F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg   53 (125)
                      +.=+..+.++++++++++|++++.+++|..+|++|+..+=..
T Consensus        63 w~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         63 WSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            444678889999999999999999999999999999987443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.35  E-value=0.0069  Score=48.98  Aligned_cols=56  Identities=16%  Similarity=0.281  Sum_probs=51.9

Q ss_pred             cccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196            2 QKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE   57 (125)
Q Consensus         2 ~kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE   57 (125)
                      ++-||...++-..+.-+++.+++.+++++++++.+++|.++++.|+.+..+.|.|.
T Consensus       247 ~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  247 KKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            56789999999999999999999999999999999999999999999999888765

; GO: 0055085 transmembrane transport

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.11  E-value=0.013  Score=44.57  Aligned_cols=57  Identities=16%  Similarity=0.255  Sum_probs=48.3

Q ss_pred             ccCceeeechhhHHHHHHHHHHH-HHhhhhhhhhhhcchhhhhhhhhheeecchhhhh
Q 033196            3 KRGPVFVTAFSPLMMIIVAIMGS-FILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYE   59 (125)
Q Consensus         3 kkGPvfvs~F~PL~~V~~aIl~~-lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~   59 (125)
                      ..++..+++..-..+++++++++ ++++|.++...++|.++.+.|++++.+.......
T Consensus        93 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~  150 (292)
T COG0697          93 YTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI  150 (292)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh
Confidence            34556667777889999999997 7779999999999999999999999998776543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=95.06  E-value=0.0092  Score=48.00  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=43.3

Q ss_pred             cCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196            4 RGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW   52 (125)
Q Consensus         4 kGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw   52 (125)
                      .+..-+++..-..|++++++++++++|.++..+++|.++.+.|+.++++
T Consensus        97 ~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         97 HHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            3445566777789999999999999999999999999999999999875

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=94.86  E-value=0.021  Score=41.50  Aligned_cols=40  Identities=13%  Similarity=0.344  Sum_probs=35.5

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196           11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV   50 (125)
Q Consensus        11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv   50 (125)
                      ++.=+..+.+++++.++++|++++.+++|-++|+.|+..+
T Consensus        67 vW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         67 LWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            4555778889999999999999999999999999998764

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=94.84  E-value=0.014  Score=48.61  Aligned_cols=51  Identities=14%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196            3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG   53 (125)
Q Consensus         3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg   53 (125)
                      ...+.+..+..-+.|++++++++++++|.++...++|-++++.|+.+...+
T Consensus       137 ~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~  187 (350)
T PTZ00343        137 LGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK  187 (350)
T ss_pred             hccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc
Confidence            345677888888999999999999999999999999999999999998753

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=94.80  E-value=0.019  Score=46.12  Aligned_cols=48  Identities=10%  Similarity=0.261  Sum_probs=42.8

Q ss_pred             eeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196            7 VFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK   54 (125)
Q Consensus         7 vfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK   54 (125)
                      ..+++...+.++++.++++++++|.++..+++|.++.++|+++++++.
T Consensus        87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~  134 (299)
T PRK11453         87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDS  134 (299)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcccc
Confidence            355666778899999999999999999999999999999999999763

>PRK11431 multidrug efflux system protein; Provisional

Probab=94.45  E-value=0.032  Score=40.23  Aligned_cols=40  Identities=23%  Similarity=0.327  Sum_probs=35.8

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196           11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV   50 (125)
Q Consensus        11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv   50 (125)
                      ++.=+..+.+++++.++++|++++.+++|-.+|+.|+..+
T Consensus        61 vW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         61 VWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            4555778889999999999999999999999999998765

>TIGR00803 nst UDP-galactose transporter

Probab=94.17  E-value=0.016  Score=44.64  Aligned_cols=48  Identities=15%  Similarity=0.208  Sum_probs=40.6

Q ss_pred             ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196            3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV   50 (125)
Q Consensus         3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv   50 (125)
                      ..||+..++-.-+..+++++++++++++++++...+|+.+++.|+|+.
T Consensus       175 ~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       175 YADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            345555566667788999999999999999999999999999998863

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00688 rarD rarD protein

Probab=94.01  E-value=0.021  Score=44.51  Aligned_cols=45  Identities=13%  Similarity=0.191  Sum_probs=39.3

Q ss_pred             eeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196            8 FVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW   52 (125)
Q Consensus         8 fvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw   52 (125)
                      -+++..-..|++++++++++++|+++..+++|.++.++|+.++..
T Consensus        98 ~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        98 EVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            344556679999999999999999999999999999999987764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=93.96  E-value=0.035  Score=45.05  Aligned_cols=51  Identities=29%  Similarity=0.339  Sum_probs=45.6

Q ss_pred             ccCceeeechhhHHHHHHHHHHHHHhhhhhhhhhh----cchhhhhhhhhheeec
Q 033196            3 KRGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGA----LGAVVIVIGLYAVLWG   53 (125)
Q Consensus         3 kkGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsi----iGavLIi~GlYlvlwg   53 (125)
                      ..|+...++..-+.+++++++++++|+|..+..++    +|.++|+.|..+.-.+
T Consensus       235 ~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       235 KVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            56788888889999999999999999999999999    9999999998876443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=93.86  E-value=0.044  Score=44.05  Aligned_cols=46  Identities=17%  Similarity=0.112  Sum_probs=40.9

Q ss_pred             eechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196            9 VTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK   54 (125)
Q Consensus         9 vs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK   54 (125)
                      +++..-+.|++++++++++++|.++..+++|.++-++|++++++..
T Consensus        94 a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~  139 (295)
T PRK11689         94 VGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGD  139 (295)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCC
Confidence            3455567899999999999999999999999999999999999764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=93.66  E-value=0.024  Score=45.34  Aligned_cols=49  Identities=14%  Similarity=0.127  Sum_probs=43.1

Q ss_pred             cCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196            4 RGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW   52 (125)
Q Consensus         4 kGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw   52 (125)
                      ..+.+.++..-++|++++++++++++|+++...++|.+++++|+.+...
T Consensus        89 ~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~  137 (302)
T TIGR00817        89 VAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD  137 (302)
T ss_pred             ccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC
Confidence            3456677788889999999999999999999999999999999987653

specificities overlap.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=93.63  E-value=0.055  Score=39.85  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=36.2

Q ss_pred             eechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhe
Q 033196            9 VTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAV   50 (125)
Q Consensus         9 vs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlv   50 (125)
                      +.+.|-+..+||++.++++.+|......++|.++|+.|+.++
T Consensus        71 vPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   71 VPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             ehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            345677889999999988888888888999999999999876

Many members are annotated as potential transmembrane proteins.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=93.18  E-value=0.032  Score=47.22  Aligned_cols=53  Identities=19%  Similarity=0.347  Sum_probs=47.0

Q ss_pred             ccCceeeechhhHHHHHHHHHHHHH------hhhhhhhhhhcchhhhhhhhhheeecch
Q 033196            3 KRGPVFVTAFSPLMMIIVAIMGSFI------LAEKIYVGGALGAVVIVIGLYAVLWGKY   55 (125)
Q Consensus         3 kkGPvfvs~F~PL~~V~~aIl~~lf------LgE~L~lGsiiGavLIi~GlYlvlwgK~   55 (125)
                      -..|..+++.....|+++++++++|      ++|.++...++|.++-++|+.++++.++
T Consensus       101 ~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g  159 (358)
T PLN00411        101 YSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHG  159 (358)
T ss_pred             hccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccC
Confidence            3467788899999999999999999      6999999999999999999998886554

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=93.08  E-value=0.072  Score=39.03  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=36.1

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196           11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW   52 (125)
Q Consensus        11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw   52 (125)
                      ++.=+..+.+++.++++++|++++..++|-.+|++|+...=+
T Consensus        62 iW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          62 IWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            445567788899999999999999999999999999876543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=92.61  E-value=0.12  Score=43.98  Aligned_cols=47  Identities=15%  Similarity=0.145  Sum_probs=41.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhh
Q 033196           12 FSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEY   58 (125)
Q Consensus        12 F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~   58 (125)
                      -+-...+++.+++++||++..++.+++|.++.++|+.++.+......
T Consensus       111 L~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~  157 (334)
T PF06027_consen  111 LDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSG  157 (334)
T ss_pred             hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccccc
Confidence            34467889999999999999999999999999999999999986543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=92.30  E-value=0.074  Score=42.61  Aligned_cols=47  Identities=9%  Similarity=0.072  Sum_probs=40.9

Q ss_pred             ceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeec
Q 033196            6 PVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWG   53 (125)
Q Consensus         6 Pvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwg   53 (125)
                      +..+++..-+.++++++++.+ ++|+++..+++|.++.++|++++.|+
T Consensus        96 a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         96 SGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            334567778899999999986 79999999999999999999999875

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.02  E-value=0.076  Score=45.76  Aligned_cols=53  Identities=38%  Similarity=0.515  Sum_probs=45.0

Q ss_pred             echhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhhh
Q 033196           10 TAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENK   62 (125)
Q Consensus        10 s~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~   62 (125)
                      +.---+++++.++++++||.|.+++-.++|-++.++|-++...--.+|++...
T Consensus        94 tPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t  146 (335)
T KOG2922|consen   94 TPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIES  146 (335)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccccc
Confidence            33445788999999999999999999999999999999988877777665544

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=91.97  E-value=0.078  Score=44.03  Aligned_cols=49  Identities=22%  Similarity=0.392  Sum_probs=39.9

Q ss_pred             echhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhh
Q 033196           10 TAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEY   58 (125)
Q Consensus        10 s~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~   58 (125)
                      +.+.-++.++.++++.++|+|+++.-.++|.++++.|..++..--.+++
T Consensus        80 ~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~  128 (300)
T PF05653_consen   80 APLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEE  128 (300)
T ss_pred             HHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCC
Confidence            3344567788999999999999999999999999999987665444443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=91.38  E-value=0.17  Score=40.91  Aligned_cols=53  Identities=21%  Similarity=0.268  Sum_probs=45.8

Q ss_pred             echhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhhhhhhh
Q 033196           10 TAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKEYEENK   62 (125)
Q Consensus        10 s~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE~~~~~   62 (125)
                      .++.-..++++++++.++++++.+...+++.+++.+|+.++..++.++.+...
T Consensus        94 ~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~  146 (303)
T PF08449_consen   94 IVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN  146 (303)
T ss_pred             HHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence            35666778999999999999999999999999999999999998876655443

; GO: 0055085 transmembrane transport

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=91.08  E-value=0.21  Score=40.59  Aligned_cols=43  Identities=19%  Similarity=0.283  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhh----hcchhhhhhhhhheeecch
Q 033196           13 SPLMMIIVAIMGSFILAEKIYVGG----ALGAVVIVIGLYAVLWGKY   55 (125)
Q Consensus        13 ~PL~~V~~aIl~~lfLgE~L~lGs----iiGavLIi~GlYlvlwgK~   55 (125)
                      +-++++++++++.++++|..+..+    ++|.++++.|.+++.+.+.
T Consensus        93 ~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~  139 (290)
T TIGR00776        93 TGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKD  139 (290)
T ss_pred             HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccc
Confidence            447778999999999999999999    9999999999999977753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=90.75  E-value=0.21  Score=34.56  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=20.4

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhh
Q 033196           11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVI   43 (125)
Q Consensus        11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLI   43 (125)
                      ++.=+.++.+++++.++++|++++.+++|-.+|
T Consensus        61 vw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   61 VWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            455577889999999999999999999997765

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=87.95  E-value=0.46  Score=40.42  Aligned_cols=52  Identities=19%  Similarity=0.282  Sum_probs=45.9

Q ss_pred             cCceeeechhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhh-eeecch
Q 033196            4 RGPVFVTAFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYA-VLWGKY   55 (125)
Q Consensus         4 kGPvfvs~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYl-vlwgK~   55 (125)
                      -||+-+|+-.--.-.|+++.++++++.+++-.+++|.++++.|+.. +..||.
T Consensus       265 FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~  317 (337)
T KOG1580|consen  265 FGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK  317 (337)
T ss_pred             hCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence            4888899888888899999999999999999999999999999876 445654

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=87.56  E-value=0.34  Score=35.85  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=28.6

Q ss_pred             HHHHHHHhhhhhhhhhhcchhhhhhhhhhee
Q 033196           21 AIMGSFILAEKIYVGGALGAVVIVIGLYAVL   51 (125)
Q Consensus        21 aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl   51 (125)
                      +.++.++++|++.+..+.|.++++.++|.+.
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            7788999999999999999999999999764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=85.23  E-value=0.75  Score=38.37  Aligned_cols=48  Identities=19%  Similarity=0.297  Sum_probs=37.4

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhh----hcchhhhhhhhhheeecchhhhhh
Q 033196           13 SPLMMIIVAIMGSFILAEKIYVGG----ALGAVVIVIGLYAVLWGKYKEYEE   60 (125)
Q Consensus        13 ~PL~~V~~aIl~~lfLgE~L~lGs----iiGavLIi~GlYlvlwgK~kE~~~   60 (125)
                      .-++.+.+++++.++|||--+...    +++-++|++|.++..|.+.++.+.
T Consensus        79 tg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~  130 (269)
T PF06800_consen   79 TGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKS  130 (269)
T ss_pred             hhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            346788899999999999554443    336688999999999988877654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.07  E-value=0.89  Score=33.79  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=29.8

Q ss_pred             HHHHHHHHhhhhhhhhhhcchhhhhhhhhheee
Q 033196           20 VAIMGSFILAEKIYVGGALGAVVIVIGLYAVLW   52 (125)
Q Consensus        20 ~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlw   52 (125)
                      -+.++.++|+|++.|..+.|+.+|..|+|+...
T Consensus        83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            367899999999999999999999999998764

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=84.00  E-value=1.1  Score=36.10  Aligned_cols=47  Identities=15%  Similarity=0.257  Sum_probs=41.8

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196           11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE   57 (125)
Q Consensus        11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE   57 (125)
                      +..-+-+++++++++++|+.+++..++++-++++.|+.++-.+....
T Consensus        48 vl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   48 VLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            44457789999999999999999999999999999999998887765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=82.90  E-value=0.81  Score=38.84  Aligned_cols=47  Identities=15%  Similarity=0.123  Sum_probs=38.4

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecchhh
Q 033196           11 AFSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGKYKE   57 (125)
Q Consensus        11 ~F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK~kE   57 (125)
                      .-.-+-+.+.++.|+++|||.+++.+.+|-++|+.+.-=..|.-+|+
T Consensus       241 ~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         241 TLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             HHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence            34457899999999999999999999999999998876555544443

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=80.47  E-value=0.98  Score=38.92  Aligned_cols=47  Identities=21%  Similarity=0.332  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhhee-----ecchhhhhhh
Q 033196           15 LMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVL-----WGKYKEYEEN   61 (125)
Q Consensus        15 L~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvl-----wgK~kE~~~~   61 (125)
                      .+++|+++++++||+|+.+.-..+|..+-+.|+.+..     .|...+.++.
T Consensus       132 ssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~  183 (346)
T KOG4510|consen  132 SSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDS  183 (346)
T ss_pred             cChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccc
Confidence            3689999999999999999999999999999988754     4544444333

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.03
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.25

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.03  E-value=1e-06  Score=64.79  Aligned_cols=53  Identities=9%  Similarity=0.177  Sum_probs=36.9

Q ss_pred             cccCceeeech-hhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196            2 QKRGPVFVTAF-SPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK   54 (125)
Q Consensus         2 ~kkGPvfvs~F-~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK   54 (125)
                      ++.++..+..+ .-+.+++++++++++|+|++++.+++|.++|++|++++.+.+
T Consensus        52 k~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           52 AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             C-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44566667666 789999999999999999999999999999999999987654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.25  E-value=0.00012  Score=51.20  Aligned_cols=43  Identities=9%  Similarity=0.299  Sum_probs=39.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhcchhhhhhhhhheeecc
Q 033196           12 FSPLMMIIVAIMGSFILAEKIYVGGALGAVVIVIGLYAVLWGK   54 (125)
Q Consensus        12 F~PL~~V~~aIl~~lfLgE~L~lGsiiGavLIi~GlYlvlwgK   54 (125)
                      +.-+.+++++++++++++|++++.+++|.++|+.|++++-+..
T Consensus        63 ~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           63 WSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3667899999999999999999999999999999999986643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00