Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 35/111 (31%), Positives = 56/111 (50%)
Query: 12 SSFIMSRVACVLMLMMVMDGRVK----RVSGEGLSPSQCNEERRLGLNACKPIVYGQPPS 67
S I + V + L M+ V +V G LS NE +R NA P QPPS
Sbjct: 3 SGMIRTLVILAIALFMIGSDNVHVAKAQVCGANLS-GLMNECQRYVSNA-GP--NSQPPS 58
Query: 68 PACCQRIRVQHFECICPSITPKLASLVDINKAILLLKTCGRRVPRHFKCGS 118
+CC IR C C ++ + + +D++K + + ++CG+++P +KCGS
Sbjct: 59 RSCCALIRPIDVPCACRYVSRDVTNYIDMDKVVYVARSCGKKIPSGYKCGS 109
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 32/114 (28%), Positives = 52/114 (45%)
Query: 15 IMSRVACVLMLMMVMDGRVKRVSGEGLSPSQCNEERRLGLNACKPIVYGQPPSP------ 68
I SR L +++V+ G + V G+G C + + C VY Q P P
Sbjct: 3 IGSRALIGLTMILVISGTLP-VPGQGT----CQGDIEGLMKECA--VYVQRPGPKVNPSE 55
Query: 69 ACCQRIRVQHFECICPSITPKLASLVDINKAILLLKTCGRRVPRHFKCGSLHFP 122
ACC+ ++ C C IT + ++D++K + + CG+ + KCGS P
Sbjct: 56 ACCRVVKRSDIPCACGRITASVQQMIDMDKVVHVTAFCGKPLAHGTKCGSYVVP 109
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 31/94 (32%), Positives = 44/94 (46%)
Query: 25 LMMVMDGRVKRVSGEGLSPSQCNEERRLGLNACKPIVYGQ---PPSPACCQRIRVQHFEC 81
L MV+ + + E S CN + L C+P V G PP P CC RV + +C
Sbjct: 15 LAMVLTAAI--MVKEATSIPVCNIDTN-DLAKCRPAVTGNNPPPPGPDCCAVARVANLQC 71
Query: 82 ICPSITPKLASL-VDINKAILLLKTCGRRVPRHF 114
+CP P L ++ +D ++ LL CG P F
Sbjct: 72 LCP-YKPYLPTVGIDPSRVRPLLANCGVNSPSCF 104
Score = 42.9 bits (101), Expect = 1e-06
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 36 VSGEGLSPSQCNEERRLGLNACKPIVYGQ---PPSPACCQRIR---VQHFECICPSITPK 89
S + C + L C Y PSPACC ++ C+C +T
Sbjct: 12 APPAPASAASCADS----LLPCLGYCYVNGTAAPSPACCAALKAAVKADVPCLCDLVTSP 67
Query: 90 LASLVDIN--KAILLLKTCGRRVPRHFKC 116
LA+ IN +A+ L K CG P KC
Sbjct: 68 LAAGFGINLTRAVALPKACGLTSPP-SKC 95
The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95
>gnl|CDD|240018 cd04660, nsLTP_like, nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3
Score = 42.4 bits (100), Expect = 1e-06
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 53 GLNACKPIVYG----QPPSPACCQRIRVQHFECICPSITPKLASLVDINKAILLLKTCGR 108
L C+P V G PPS CC +R C+C T + ++D +KA+ L CG
Sbjct: 7 LLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGL 66
Query: 109 RVPRHFKC 116
+P C
Sbjct: 67 PLP-PSSC 73
Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes. Length = 73
>gnl|CDD|238925 cd01959, nsLTP2, nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes
Score = 34.6 bits (80), Expect = 0.001
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 54 LNACKP-IVYGQPPSPACCQRIRVQHFECICPSI-TPKLASLVDINKAILLLKTCGRRVP 111
L+ C P I+ G PPS ACC +++ Q C+C P L V+ A +L CG P
Sbjct: 6 LSPCLPAILGGSPPSAACCAKLKEQQ-SCLCQYAKNPSLKQYVNSPNARKVLAACGVPYP 64
Query: 112 R 112
Sbjct: 65 N 65
In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene expression has been observed in barley and rice developing seeds, during Zinnia elegans cell differentiation, and under abiotic stress conditions in barley roots. The nsLTP2 of Brassica rapa has also been identified as a potent allergen. Length = 66
RCR: Chitin synthesis regulation, resistance to Co
91.29
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3
Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes
In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes
In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins
Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family
Probab=99.02 E-value=3.3e-10 Score=71.77 Aligned_cols=69 Identities=29% Similarity=0.668 Sum_probs=53.6
Q ss_pred CchhhhccccCCcccccC----CCCCHhHHHHHHhc-CccccccCCCCCCcCC-----CCHHHHHHHHhhcCCCCCCCCC
Q 033313 46 CNEERRLGLNACKPIVYG----QPPSPACCQRIRVQ-HFECICPSITPKLASL-----VDINKAILLLKTCGRRVPRHFK 115 (122)
Q Consensus 46 C~~~~~~~L~pC~~yv~g----~~Ps~~CC~~vk~~-d~~ClC~~~~~~~~~~-----in~~~a~~Lp~~Cgv~~p~~~~ 115 (122)
|... ...+.+|.+|+.+ ..|+++||++++.+ +..|+|..+....... ++..++.+||+.||+..+. ++
T Consensus 1 C~~~-~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~-~~ 78 (79)
T smart00499 1 CGQV-LLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPY-TD 78 (79)
T ss_pred Chhh-hhhHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCC-CC
Confidence 4444 2356699999864 36889999999999 9999999995333222 4899999999999999875 45
Q ss_pred C
Q 033313 116 C 116 (122)
Q Consensus 116 C 116 (122)
|
T Consensus 79 C 79 (79)
T smart00499 79 C 79 (79)
T ss_pred C
Confidence 4
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]
The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins
In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls
Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Score = 37.5 bits (87), Expect = 5e-05
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 54 LNACKP-IVYGQPPSPACCQRIRVQHFECICPSI-TPKLASLVDINKAILLLKTCGRRVP 111
L C I+ G PS CC +R Q C C P + A L +CG VP
Sbjct: 7 LAVCASAILSGAKPSGECCGNLRAQQ-GCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP 65
Query: 112 R 112
Sbjct: 66 H 66
class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]
Score = 36.7 bits (85), Expect = 4e-05
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 54 LNACKP-IVYGQPPSPACCQRIRVQHFECICPSIT-PKLASLVDINKAILLLKTCGRRVP 111
L C I+ G PS CC +R Q C C P + A L +CG VP
Sbjct: 7 LAVCASAILSGAKPSGECCGNLRAQQ-GCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP 65
Query: 112 R 112
Sbjct: 66 H 66
