Citrus Sinensis ID: 033333

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS
Secondary Structure (PSIPRED)
cEEEcccccccccHHHHHHHHHHHHccEEEEEcccccEEEEEEEccccccEEEEEEEEEEHHHccccccccEEEEEEEcHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHcccEEEEEccccEEEEEccccccccEEEEEEEEEEHHHHHcccHHccccEEEEcHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccEEEcc
Coil and Loop (DISEMBL)
mlfpkggweIDESIQEAALRETIEEAGVTGIVECELlgewnfksrahntdyqgymfplLVQDQlaewpeknvrsrKWMSVAEARKVCQHWWMKEALDRLVMRLTSqqlhgkedsvgtcsls
Flexible Loop (DISEMBL)
mlfpkggweIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLtsqqlhgkedsvgtcsls
Low Complexity Region (SEG)
MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS
Disordered region (IsUnstruct)
*******WEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT*****************
Disordered Region (DISOPRED)
MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR***********************
Disordered Region (DISEMBL)
MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP**********SVAEARKVCQHWWMKEALDRLVMRLTSQQ**************
Disordered Region (DISPRO)
*LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q9ZU95	182	Nudix hydrolase 17, mitoc	yes	no	0.983	0.653	0.558	1e-32
Q9LQU5	176	Nudix hydrolase 18, mitoc	no	no	0.925	0.636	0.557	2e-31
Q9LE73	207	Nudix hydrolase 4 OS=Arab	no	no	0.818	0.478	0.61	5e-31
Q8VY81	198	Nudix hydrolase 21, chlor	no	no	0.834	0.510	0.607	3e-30
Q52K88	202	Nudix hydrolase 13, mitoc	no	no	0.991	0.594	0.426	2e-24
Q93ZY7	203	Nudix hydrolase 12, mitoc	no	no	0.983	0.586	0.412	9e-22
Q9LHK1	180	Nudix hydrolase 16, mitoc	no	no	0.785	0.527	0.480	7e-17
Q566C7	168	Diphosphoinositol polypho	yes	no	0.685	0.494	0.377	1e-06
O95989	172	Diphosphoinositol polypho	yes	no	0.685	0.482	0.366	2e-06
Q9JI46	168	Diphosphoinositol polypho	yes	no	0.677	0.488	0.370	5e-06

>sp|Q9ZU95|NUD17_ARATH Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 90/120 (75%), Gaps = 1/120 (0%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           ++FPKGGWE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV
Sbjct: 60  LMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLV 118

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 120
            +QL  WPE++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct: 119 TEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9LQU5|NUD18_ARATH Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 87/113 (76%), Gaps = 1/113 (0%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           ++FPKGGWE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV
Sbjct: 55  LMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLV 113

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 113
           +++L  WPE+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct: 114 KEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LE73|NUDT4_ARATH Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 79/100 (79%), Gaps = 1/100 (1%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           MLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LLV
Sbjct: 96  MLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLV 154

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 100
             +   WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct: 155 SQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q8VY81|NUD21_ARATH Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 1/102 (0%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           ML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H   + G+MFPLLV
Sbjct: 93  MLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLV 151

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 102
             Q   WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R
Sbjct: 152 SQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINR 193

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q52K88|NUD13_ARATH Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 89/129 (68%), Gaps = 9/129 (6%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY--------Q 52
           ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +
Sbjct: 60  LVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCK 119

Query: 53  GYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKE 112
           GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   KE
Sbjct: 120 GYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKE 178

Query: 113 DSVGTCSLS 121
           DS+   S+S
Sbjct: 179 DSLAISSIS 187

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(6) hexaphosphate (Ap(6)A), diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) and adenosine tetraphosphate (p(4)A) as substrates, but not diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A), diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A), deoxyribonucleoside triphosphates, ribonucleoside triphosphates, diphosphoinositol pentakisphosphate (PP-InsP(5)) and 5-phospho-alpha-D-ribosyl diphosphate (PRPP).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q93ZY7|NUD12_ARATH Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 82/126 (65%), Gaps = 7/126 (5%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD------YQGY 54
           ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   +       +GY
Sbjct: 61  LVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGY 120

Query: 55  MFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ-QLHGKED 113
           MF L V ++L +WPE+  R R+W++V EA ++C++ WM+ AL+  +  +  + +L  +E+
Sbjct: 121 MFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEE 180

Query: 114 SVGTCS 119
           +V   S
Sbjct: 181 TVHDSS 186

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LHK1|NUD16_ARATH Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 73/102 (71%), Gaps = 7/102 (6%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGY 54
           +LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  
Sbjct: 58  LLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAA 116

Query: 55  MFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 96
           M+ L V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct: 117 MYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q566C7|NUDT3_RAT Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Rattus norvegicus GN=Nudt3 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 2   LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
           + P GG E +E    AA+RE  EEAGV G +   L+G +  + R H T    Y++ L+V 
Sbjct: 47  IVPGGGMEPEEEPSVAAVREVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVT 101

Query: 62  DQLAEWPEK-NV-RSRKWMSVAEARKVCQH 89
           + L +W +  N+ R R+W  + EA KV Q+
Sbjct: 102 EVLEDWEDSVNIGRKREWFKIEEAVKVLQY 131

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|O95989|NUDT3_HUMAN Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Homo sapiens GN=NUDT3 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 2   LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
           + P GG E +E    AA+RE  EEAGV G +   L+G +  + R H T    Y++ L+V 
Sbjct: 47  IVPGGGMEPEEEPSVAAVREVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVT 101

Query: 62  DQLAEWPEK-NV-RSRKWMSVAEARKVCQH 89
           + L +W +  N+ R R+W  + +A KV Q+
Sbjct: 102 EVLEDWEDSVNIGRKREWFKIEDAIKVLQY 131

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9JI46|NUDT3_MOUSE Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Mus musculus GN=Nudt3 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 2   LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
           + P GG E +E    AA+RE  EEAGV G +   L+G +  + R H T    Y++ L+V 
Sbjct: 47  IVPGGGMEPEEEPSVAAVREVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVT 101

Query: 62  DQLAEWPEK-NV-RSRKWMSVAEARKVCQ 88
           + L +W +  N+ R R+W  + +A KV Q
Sbjct: 102 EVLEDWEDSVNIGRKREWFKIEDAIKVLQ 130

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate (By similarity). Acts as a negative regulator of the ERK1/2 pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
255580361	193	diphosphoinositol polyphosphate phosphoh	0.876	0.549	0.775	3e-43
356569788	199	PREDICTED: nudix hydrolase 17, mitochond	0.900	0.547	0.727	1e-39
357460851	195	Nudix hydrolase [Medicago truncatula] gi	0.933	0.579	0.695	2e-39
217075388	195	unknown [Medicago truncatula]	0.933	0.579	0.695	2e-39
224079516	188	predicted protein [Populus trichocarpa]	0.983	0.632	0.669	2e-39
388504680	207	unknown [Lotus japonicus]	0.958	0.560	0.686	3e-39
351726568	211	uncharacterized protein LOC100500105 [Gl	0.900	0.516	0.718	3e-39
359488225	182	PREDICTED: nudix hydrolase 18, mitochond	0.975	0.648	0.696	4e-39
449445094	185	PREDICTED: nudix hydrolase 18, mitochond	0.983	0.643	0.685	8e-39
357521283	164	Nudix hydrolase [Medicago truncatula] gi	0.876	0.646	0.691	8e-39

>gi|255580361|ref|XP_002531008.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis] gi|223529406|gb|EEF31368.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 97/107 (90%), Gaps = 1/107 (0%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           +LFPKGGWE+DE+I+EAA RET+EEAGV GIVECEL G+W+FKS+ H+T Y+GYMFPLLV
Sbjct: 68  LLFPKGGWELDETIKEAASRETLEEAGVRGIVECEL-GKWSFKSKTHDTFYEGYMFPLLV 126

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ 107
           Q+QL  WPEKNVR RKWMSVA+AR+ CQHWWMKEALDRLV RL+SQQ
Sbjct: 127 QEQLEFWPEKNVRERKWMSVADARECCQHWWMKEALDRLVNRLSSQQ 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569788|ref|XP_003553078.1| PREDICTED: nudix hydrolase 17, mitochondrial-like [Glycine max]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 94/110 (85%), Gaps = 1/110 (0%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           MLFPKGGWE+DES +EAALRET+EEAGV GIV  +L G+W+FKS+ H+T Y+GYMFPLLV
Sbjct: 66  MLFPKGGWELDESKKEAALRETMEEAGVRGIVGGKL-GKWSFKSKTHDTFYEGYMFPLLV 124

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG 110
           Q+QL  WPE+NVR R WMSV EAR+VCQHWWMKEALDRLV RL+ Q+  G
Sbjct: 125 QEQLEFWPEQNVRQRIWMSVTEAREVCQHWWMKEALDRLVNRLSGQKQLG 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460851|ref|XP_003600707.1| Nudix hydrolase [Medicago truncatula] gi|355489755|gb|AES70958.1| Nudix hydrolase [Medicago truncatula] gi|388507980|gb|AFK42056.1| unknown [Medicago truncatula]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/115 (69%), Positives = 97/115 (84%), Gaps = 2/115 (1%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           MLFPKGGWE+DES +EAALRET+EEAGV GIVE +L G+W+FKS+ ++T Y GYMFPLLV
Sbjct: 66  MLFPKGGWELDESQKEAALRETMEEAGVRGIVEGKL-GKWSFKSKTYDTLYDGYMFPLLV 124

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSV 115
           Q++L  WPE+N+R R+WMS++EAR VCQHWWMKEALDRLV RL  Q+L G E  V
Sbjct: 125 QEELEFWPEQNLRQRRWMSISEARDVCQHWWMKEALDRLVNRLLGQKL-GSEKQV 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075388|gb|ACJ86054.1| unknown [Medicago truncatula]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/115 (69%), Positives = 97/115 (84%), Gaps = 2/115 (1%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           MLFPKGGWE+DES +EAALRET+EEAGV GIVE +L G+W+FKS+ ++T Y GYMFPLLV
Sbjct: 66  MLFPKGGWELDESQKEAALRETMEEAGVRGIVEGKL-GKWSFKSKTYDTLYDGYMFPLLV 124

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSV 115
           Q++L  WPE+N+R R+WMS++EAR VCQHWWMKEALDRLV RL  Q+L G E  V
Sbjct: 125 QEELEFWPEQNLRQRRWMSISEARDVCQHWWMKEALDRLVNRLLRQKL-GSEKQV 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079516|ref|XP_002305883.1| predicted protein [Populus trichocarpa] gi|222848847|gb|EEE86394.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 95/121 (78%), Gaps = 2/121 (1%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           MLFPKGGWE DE+I++ A+RET EEAGV G++E +L GEW F+SR H TDY+GYMFPL V
Sbjct: 63  MLFPKGGWESDETIKQGAVRETYEEAGVKGVLEPQL-GEWTFQSRTHGTDYEGYMFPLRV 121

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 120
           +++L  WPEK  R RKWMSV EAR+ CQHWWMKEALD LV RL  QQ    ED VG+CSL
Sbjct: 122 KEELDFWPEKTNRLRKWMSVTEARECCQHWWMKEALDVLVDRLAGQQ-QLDEDEVGSCSL 180

Query: 121 S 121
           S
Sbjct: 181 S 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504680|gb|AFK40406.1| unknown [Lotus japonicus]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 96/118 (81%), Gaps = 2/118 (1%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           +LFPKGGWE+DES +EAALRET+EEAGV GIV   L G+W+FKS+ H+  Y+GYMFPLLV
Sbjct: 66  LLFPKGGWELDESQKEAALRETLEEAGVRGIVGGRL-GKWSFKSKTHDALYEGYMFPLLV 124

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTC 118
           Q+QL  WPE+N+R R WMSV EAR+VCQHWWMKEALDRLV RLT Q+L G E  +  C
Sbjct: 125 QEQLEFWPEQNLRQRIWMSVTEAREVCQHWWMKEALDRLVNRLTGQKL-GLEKQIHLC 181

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726568|ref|NP_001236875.1| uncharacterized protein LOC100500105 [Glycine max] gi|255629193|gb|ACU14941.1| unknown [Glycine max]

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 93/110 (84%), Gaps = 1/110 (0%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           MLFPKGGWE+DES +EAALRET+EEAGV GIV  +L G+W+FKS+ H+T Y+GYMFPLLV
Sbjct: 67  MLFPKGGWELDESKKEAALRETMEEAGVRGIVGGKL-GKWSFKSKTHDTFYEGYMFPLLV 125

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG 110
           Q+QL  WPE+NVR R WMSV EAR+VCQHWWMKEALDRLV R + Q+  G
Sbjct: 126 QEQLEFWPEQNVRQRIWMSVTEAREVCQHWWMKEALDRLVNRPSGQKQLG 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488225|ref|XP_002263589.2| PREDICTED: nudix hydrolase 18, mitochondrial-like [Vitis vinifera] gi|296087091|emb|CBI33465.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 100/122 (81%), Gaps = 4/122 (3%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           MLFPKGGWE DES  EAALRET+EEAGVTGIVE EL G+W+FKS+ ++T  + +MFPLLV
Sbjct: 57  MLFPKGGWETDESKTEAALRETVEEAGVTGIVEREL-GKWSFKSKRNDTYCEAFMFPLLV 115

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED-SVGTCS 119
           +++L  WPEKNVR RKW+SVAEAR+VCQHWWMKEALDR V RLT   L  +ED  +G CS
Sbjct: 116 KEELELWPEKNVRERKWVSVAEAREVCQHWWMKEALDRFVRRLTF--LQQEEDLGLGPCS 173

Query: 120 LS 121
           LS
Sbjct: 174 LS 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445094|ref|XP_004140308.1| PREDICTED: nudix hydrolase 18, mitochondrial-like [Cucumis sativus] gi|449529539|ref|XP_004171757.1| PREDICTED: nudix hydrolase 18, mitochondrial-like [Cucumis sativus]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 96/121 (79%), Gaps = 2/121 (1%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           MLFPKGGWE DESI EAA RET+EEAGV GIV+ EL G W+FKS+ ++T Y+GYMFPLLV
Sbjct: 67  MLFPKGGWETDESITEAASRETLEEAGVRGIVQGEL-GSWSFKSKTYDTFYEGYMFPLLV 125

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 120
           ++QL  WPEKN R R WMS  EAR+VCQHWWMKEALD LV RL+SQ+    E+ V  CSL
Sbjct: 126 KEQLEFWPEKNFRQRVWMSAHEAREVCQHWWMKEALDILVGRLSSQKKQQMEE-VMPCSL 184

Query: 121 S 121
           S
Sbjct: 185 S 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521283|ref|XP_003630930.1| Nudix hydrolase [Medicago truncatula] gi|355524952|gb|AET05406.1| Nudix hydrolase [Medicago truncatula] gi|388498324|gb|AFK37228.1| unknown [Medicago truncatula]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 92/107 (85%), Gaps = 1/107 (0%)

Query: 1   MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
           ++FPKGGWE+DES++EAA RE++EEAGVTG+VECEL G+WNF S+ +   Y+GYMFPL V
Sbjct: 56  LMFPKGGWELDESVEEAACRESLEEAGVTGLVECEL-GQWNFISKRYGIYYEGYMFPLFV 114

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ 107
           ++QL +WPEKNVR R WM+VA+AR+VCQHWWMKEALD LV RL S Q
Sbjct: 115 KEQLDQWPEKNVRRRIWMTVAQAREVCQHWWMKEALDILVQRLVSSQ 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2065440	182	NUDT17 "nudix hydrolase homolo	0.983	0.653	0.558	4.1e-33
TAIR|locus:2006817	176	NUDT18 "nudix hydrolase homolo	0.925	0.636	0.557	6e-32
TAIR|locus:2014164	207	NUDT4 "nudix hydrolase homolog	0.818	0.478	0.61	9.8e-32
TAIR|locus:2206835	198	NUDT21 "nudix hydrolase homolo	0.876	0.535	0.588	1.8e-30
TAIR|locus:2090842	202	NUDX13 "nudix hydrolase homolo	0.991	0.594	0.426	1.2e-24
TAIR|locus:2091275	180	NUDT16 "nudix hydrolase homolo	0.785	0.527	0.490	2.3e-23
TAIR|locus:2010331	203	NUDT12 "nudix hydrolase homolo	0.942	0.561	0.430	7.8e-23
POMBASE|SPAC13G6.14	210	aps1 "diadenosine 5',5'''-p1,p	0.380	0.219	0.489	1.5e-10
UNIPROTKB|G4MKT5	168	MGG_06680 "Nudix/MutT family p	0.826	0.595	0.333	4.1e-10
RGD|1310183	168	Nudt3 "nudix (nucleoside dipho	0.685	0.494	0.377	2.2e-09

TAIR|locus:2065440 NUDT17 "nudix hydrolase homolog 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 67/120 (55%), Positives = 90/120 (75%)

Query:     1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
             ++FPKGGWE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV
Sbjct:    60 LMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLV 118

Query:    61 QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 120
              +QL  WPE++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct:   119 TEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2006817 NUDT18 "nudix hydrolase homolog 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 63/113 (55%), Positives = 87/113 (76%)

Query:     1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
             ++FPKGGWE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV
Sbjct:    55 LMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLV 113

Query:    61 QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 113
             +++L  WPE+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct:   114 KEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2014164 NUDT4 "nudix hydrolase homolog 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 61/100 (61%), Positives = 79/100 (79%)

Query:     1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
             MLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LLV
Sbjct:    96 MLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLV 154

Query:    61 QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 100
               +   WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct:   155 SQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2206835 NUDT21 "nudix hydrolase homolog 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 63/107 (58%), Positives = 79/107 (73%)

Query:     1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
             ML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H   + G+MFPLLV
Sbjct:    93 MLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLV 151

Query:    61 QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ 107
               Q   WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R    Q
Sbjct:   152 SQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2090842 NUDX13 "nudix hydrolase homolog 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/129 (42%), Positives = 89/129 (68%)

Query:     1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY--------Q 52
             ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +
Sbjct:    60 LVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCK 119

Query:    53 GYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKE 112
             GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   KE
Sbjct:   120 GYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKE 178

Query:   113 DSVGTCSLS 121
             DS+   S+S
Sbjct:   179 DSLAISSIS 187

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS;IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

TAIR|locus:2091275 NUDT16 "nudix hydrolase homolog 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 50/102 (49%), Positives = 74/102 (72%)

Query:     1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY--QGY---- 54
             +LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++  +G     
Sbjct:    58 LLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAA 116

Query:    55 MFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 96
             M+ L V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct:   117 MYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2010331 NUDT12 "nudix hydrolase homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 53/123 (43%), Positives = 83/123 (67%)

Query:     1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LGEWNFKSRAHNTDYQ------G 53
             ++FPKGGWE DE++ EAA RE IEEAGV GI+  EL LG W F+S++   + +      G
Sbjct:    61 LVFPKGGWEDDETVLEAASREAIEEAGVKGILR-ELPLGVWEFRSKSSTVEDECLGGCKG 119

Query:    54 YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ-LHGKE 112
             YMF L V ++L +WPE+  R R+W++V EA ++C++ WM+ AL+  +  +  ++ L  +E
Sbjct:   120 YMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEE 179

Query:   113 DSV 115
             ++V
Sbjct:   180 ETV 182

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

POMBASE|SPAC13G6.14 aps1 "diadenosine 5',5'''-p1,p6-hexaphosphate hydrolase Aps1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 106 (42.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 23/47 (48%), Positives = 28/47 (59%)

Query:     4 PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD 50
             PKGGWE DES+Q+AALRE  EE G+ G +    LG +  K      D
Sbjct:    72 PKGGWEADESVQQAALREGWEEGGLVGHIT-RSLGSFKDKRPTDTID 117

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

GO:0015959 "diadenosine polyphosphate metabolic process" evidence=IDA

GO:0034431 "bis(5'-adenosyl)-hexaphosphatase activity" evidence=IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0052840 "inositol diphosphate tetrakisphosphate diphosphatase activity" evidence=IEA

GO:0052843 "inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052844 "inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052845 "inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052846 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity" evidence=IEA

GO:0052847 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0052848 "inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0071544 "diphosphoinositol polyphosphate catabolic process" evidence=IDA

GO:1901907 "diadenosine pentaphosphate catabolic process" evidence=IDA

GO:1901909 "diadenosine hexaphosphate catabolic process" evidence=IDA

GO:1901911 "adenosine 5'-(hexahydrogen pentaphosphate) catabolic process" evidence=IDA

GO:0047710 "bis(5'-adenosyl)-triphosphatase activity" evidence=IDA

UNIPROTKB|G4MKT5 MGG_06680 "Nudix/MutT family protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 37/111 (33%), Positives = 58/111 (52%)

Query:     2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL--LGEWNFKSRAHNTDYQG------ 53
             + PKGGWE DE   EAA RE  EEAG+   ++ +L  + E   K+ + +    G      
Sbjct:    58 VLPKGGWETDEECTEAAEREAWEEAGIVVTIDYDLGQIEETRVKTSSKSAK-SGKREKAI 116

Query:    54 -YMFPLLVQDQLAEWPEKNVRSRKWMSVAEA-RKVCQHWWMKEALDRLVMR 102
              + +   V  +  +WPEK+ R RKWM+  +A   +     ++EAL+R  M+
Sbjct:   117 YHFYEATVTSEEQDWPEKDKRQRKWMTFVDAWESLKDRPELQEALNRSTMK 167

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1310183 Nudt3 "nudix (nucleoside diphosphate linked moiety X)-type motif 3" [Rattus norvegicus (taxid:10116)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 34/90 (37%), Positives = 51/90 (56%)

Query:     2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
             + P GG E +E    AA+RE  EEAGV G +   L+G +  + R H T    Y++ L+V 
Sbjct:    47 IVPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLVGIFENQERKHRT----YVYVLIVT 101

Query:    62 DQLAEWPEK-NV-RSRKWMSVAEARKVCQH 89
             + L +W +  N+ R R+W  + EA KV Q+
Sbjct:   102 EVLEDWEDSVNIGRKREWFKIEEAVKVLQY 131

GO:0000287 "magnesium ion binding" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=ISO;ISS

GO:0052840 "inositol diphosphate tetrakisphosphate diphosphatase activity" evidence=IEA

GO:0052843 "inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052844 "inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052845 "inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052846 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity" evidence=IEA

GO:0052847 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0052848 "inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0071544 "diphosphoinositol polyphosphate catabolic process" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZU95	NUD17_ARATH	3, ., 6, ., 1, ., -	0.5583	0.9834	0.6538	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0038010701 hypothetical protein (188 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	1e-31
pfam00293	133	pfam00293, NUDIX, NUDIX domain	5e-15
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	8e-09
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	7e-06
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	2e-05
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	6e-05
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	1e-04
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	1e-04
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	2e-04
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	6e-04
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	8e-04
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	0.001
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	0.001
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	0.002
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	0.002
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	0.004

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  107 bits (270), Expect = 1e-31
 Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN--TDYQGYMFPLLV 60
            PKGG E DES  EAA RE  EEAGV G +    LG + ++ R+ N     +  +FPL V
Sbjct: 30  VPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEV 89

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK 93
            ++L EWPE + R RKW S  EA  + +   +K
Sbjct: 90  TEELDEWPEMHQRKRKWFSPEEAALLVEEPELK 122

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 66.0 bits (161), Expect = 5e-15
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELL-GEWNFKSRAHNTDYQGYMFPLLVQ 61
            P G  E  ES +EAA+RE  EE G+  ++   L   E+    R        ++  LL  
Sbjct: 33  LPGGKVEPGESPEEAAVRELEEETGLRVLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGG 92

Query: 62  DQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 102
           +   +  E  V   +W+ + E  ++     ++E +  L+  
Sbjct: 93  EPEPQPNEDEVSEVRWVPLEELLELLLAGEIREVIALLLAL 133

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.4 bits (118), Expect = 8e-09
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
            P GG E  E+++EAA+RE  EE G+   V   LLG +  +S         ++F   +  
Sbjct: 29  LPGGGVEPGETLEEAAIREVREETGLDVDVL-RLLGVYEVESPDEGEHAVVFVFLARLVG 87

Query: 63  QLAEW-PEKNVRSRKWMSVAEAR 84
                 P   +   +W+++ E  
Sbjct: 88  GEPTLLPPDEISEVRWVTLDELP 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
            P G  E  ES+ EAA+RET+EE G   +    LLG + + +   +T Y  + F   + +
Sbjct: 28  QPAGHLEPGESLIEAAVRETLEETGWH-VEPTALLGIYQWTAPDSDTTYLRFAFAAELLE 86

Query: 63  QLAEWP-EKNVRSRKWMSVAE 82
            L + P +  +    W+++ E
Sbjct: 87  HLPDQPLDSGIVRAHWLTLEE 107

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVT 29
          FPKG  E  E   EAALRET EE G+T
Sbjct: 31 FPKGHVEPGEDDLEAALRETEEETGIT 57

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTG 30
           P G  +  E  +EAA RE  EE G   
Sbjct: 33 LPAGLIDPGEDPEEAARRELEEETGYEA 60

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 3   FPKGGWEIDESIQ-EAALRETIEEAGVTGIV-ECELLGEWNF---KSRAHNTDYQGYMFP 57
            P G  E  E +  EAA RE  EE G+       ELLGE+        +         F 
Sbjct: 40  LPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFV 99

Query: 58  LLVQDQLAEWPEKN------VRSRKWMSVAEARKV 86
             V D LA   E        +   +W+ + E   +
Sbjct: 100 AEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAAL 134

Length = 161

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 22/45 (48%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH 47
          FP GG E  E+ +EAA RE +EE G+   VE   L         H
Sbjct: 29 FPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQNGRTEH 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVT-------GIVECELLGEWNFKS 44
          FP G  E  E+I+EAA RE  EE G         G  + +L        
Sbjct: 25 FPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETL 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE---W-------NFKSRAHNTDYQ 52
          FP+GG +  E  ++AALRE  EE G+      E++ E   W         K +     Y+
Sbjct: 31 FPQGGIDEGEDPEQAALRELEEETGLDP-DSVEIIAEIPDWLRYDLPPELKLKIWGGRYR 89

Query: 53 G 53
          G
Sbjct: 90 G 90

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE---WNFKS--RAHNTDYQGYMFP 57
            PKG  E  E+  EAA+RE  EE G+   V    LG    W   S  R H T +   M  
Sbjct: 31  LPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGTIRYWFSSSGKRVHKTVHWWLMRA 89

Query: 58  LLVQDQLAEWPEKNVRSRKWMSVAEARK 85
           L    +    P++ V   +W+   EAR 
Sbjct: 90  L--GGEFTPQPDEEVDEVRWLPPDEARD 115

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYM-----FP 57
            P G  EI E+++EAA RE  EE G+   V  ELL  ++   R    D +G+      F 
Sbjct: 39  LPGGFVEIGETLEEAARRELKEETGLRVRVL-ELLAVFDDPGR----DPRGHHVSFLFFA 93

Query: 58  LLVQDQLAEWPEKNVRSRKWMSVAEAR 84
              + +L      +     W  + E  
Sbjct: 94  AEPEGELLAGDGDDAAEVGWFPLDELP 120

Length = 145

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 4  PKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 38
          P GG E  E+  EAA RE +EE G+   V  ELLG
Sbjct: 28 PGGGLERGETFAEAARRELLEELGIRLAVVAELLG 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 6  GGW-EIDESIQEAALRETIEEAGVTGIVE 33
          GGW ++  S  E  ++E  EE G+   V 
Sbjct: 30 GGWADVGLSPAENVVKEVKEETGLDVKVR 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQ-----GYMFP 57
           FP GG E  E   E  +RE  EE G T I   E  G +  +      D        Y + 
Sbjct: 26  FPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYYYL 85

Query: 58  LLVQD-----QLAEWPEKNVRSRKWMSVAEA 83
             V       QL ++  +      W+++ EA
Sbjct: 86  CEVDAELGAQQLEDYEAELGMKPIWINIHEA 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 38
           P G  E+ ES++E A RE  EE G+  + E ELLG
Sbjct: 34 LPGGAMELGESLEETARRELKEETGLE-VEELELLG 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.87
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.86
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.85
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.85
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.84
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.83
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.83
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.83
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.83
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.82
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.81
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.81
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.81
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.81
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.81
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.8
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.8
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.8
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.8
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.8
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.8
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.79
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.79
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.79
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.78
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.78
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.78
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.77
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.77
PLN02325	144	nudix hydrolase	99.77
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.77
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.77
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.77
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.76
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.76
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.76
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.76
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.76
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.76
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.76
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.75
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.75
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.74
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.74
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.73
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.73
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.73
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.73
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.73
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.72
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.72
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.71
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.71
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.7
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.7
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.7
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.7
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.7
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.68
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.67
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.66
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.66
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.66
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.65
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.65
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.64
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.63
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.63
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.63
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.61
PRK10707	190	putative NUDIX hydrolase; Provisional	99.61
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.61
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.61
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.59
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.58
PRK08999	312	hypothetical protein; Provisional	99.49
PLN02709	222	nudix hydrolase	99.47
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.47
PLN03143	291	nudix hydrolase; Provisional	99.46
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.42
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.37
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.22
PLN02791	770	Nudix hydrolase homolog	99.15
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.15
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.07
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.99
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.91
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.74
PLN02839	372	nudix hydrolase	98.67
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.65
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.5
KOG4195	275	consensus Transient receptor potential-related cha	97.97
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.7
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.51
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	97.33
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	97.09
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	96.92
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	96.43
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	95.2
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	94.78
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	94.54
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	91.15
PF03487	43	IL13: Interleukin-13; InterPro: IPR020470 Interleu	85.66
PRK10880	350	adenine DNA glycosylase; Provisional	83.54
PF14443	126	DBC1: DBC1	81.55

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.87  E-value=4.4e-21  Score=120.52  Aligned_cols=99  Identities=24%  Similarity=0.245  Sum_probs=77.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCC--CCeeEEEEEEeEeccccccc-ccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH--NTDYQGYMFPLLVQDQLAEW-PEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W   77 (121)
                      |.||||++++||++++||.||++||||+.+..... ++.+.+.....  ......++|.+......... ...|..+++|
T Consensus        29 w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W  107 (131)
T cd03673          29 WSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGTIRYWFSSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRW  107 (131)
T ss_pred             ccCCCCccCCCCCHHHHHHHHHhhhhCCceEecce-EEEEEEeccCCCCCcceEEEEEEEEEcCCCcccCCCCcEEEEEE
Confidence            89999999999999999999999999999988776 77766544431  23345566777665443322 3467788999


Q ss_pred             EeHHHHHHhcCchhHHHHHHHHH
Q 033333           78 MSVAEARKVCQHWWMKEALDRLV  100 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~~~  100 (121)
                      ++++++.++..++..+.++..+.
T Consensus       108 ~~~~el~~~~~~~~~~~~l~~~~  130 (131)
T cd03673         108 LPPDEARDRLSYPNDRELLRAAL  130 (131)
T ss_pred             cCHHHHHHHcCCHhHHHHHHHhh
Confidence            99999999998898888887764

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=5.2e-21  Score=119.67  Aligned_cols=91  Identities=42%  Similarity=0.653  Sum_probs=71.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeee-cceeeeeEeeeCCC--CCeeEEEEEEeEecccccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-CELLGEWNFKSRAH--NTDYQGYMFPLLVQDQLAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~-~~~l~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W   77 (121)
                      |.||||+++.||++.+||+||++||||+.+... .+ ++.+.+..+..  ......++|.+.........+..+..+++|
T Consensus        28 w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W  106 (122)
T cd04666          28 WIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRP-LGRFEYRKRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKW  106 (122)
T ss_pred             EECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceE-EEEEEeeecCCCCCceEEEEEEEEEEeccccCCcccCceEEEE
Confidence            899999999999999999999999999998776 66 88887665532  234556778777665443334456678999


Q ss_pred             EeHHHHHHhcCchhH
Q 033333           78 MSVAEARKVCQHWWM   92 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~   92 (121)
                      ++++++.+++.++.+
T Consensus       107 ~~~~ea~~~~~~~~~  121 (122)
T cd04666         107 FSPEEAALLVEEPEL  121 (122)
T ss_pred             ecHHHHHHhcCChhh
Confidence            999999999887743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.85  E-value=1.8e-20  Score=117.27  Aligned_cols=95  Identities=23%  Similarity=0.221  Sum_probs=71.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCC----CeeEEEEEEeEeccccc--ccccCCcce
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN----TDYQGYMFPLLVQDQLA--EWPEKNVRS   74 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~----~~~~~~~f~~~~~~~~~--~~~~~e~~~   74 (121)
                      |.+|||++++||++++||+||++||||+.+..... ++.+.+......    .....++|.+.......  ....++..+
T Consensus        27 w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~  105 (128)
T cd04684          27 WDLPGGGIEPGESPEEALHREVLEETGLTVEIGRR-LGSASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHG  105 (128)
T ss_pred             EECCCcccCCCCCHHHHHHHHHHHHhCcEeeccee-eeEEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCcee
Confidence            89999999999999999999999999999887776 777654332221    24456778777665443  234456778


Q ss_pred             eEEEeHHHHHHhcCchhHHHHH
Q 033333           75 RKWMSVAEARKVCQHWWMKEAL   96 (121)
Q Consensus        75 ~~W~~~~~l~~~~~~~~~~~~~   96 (121)
                      ++|++++++......+....++
T Consensus       106 ~~W~~~~~l~~~~~~~~~~~a~  127 (128)
T cd04684         106 AAWLPLDEAIERLLSPLVLWAV  127 (128)
T ss_pred             eEEECHHHhhccCCCHHHHHhh
Confidence            9999999999887777655443

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.85  E-value=1e-20  Score=121.74  Aligned_cols=101  Identities=23%  Similarity=0.314  Sum_probs=72.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceee--eecceee-----eeE------eeeCCCCCeeEEEEEEeEeccccccc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI--VECELLG-----EWN------FKSRAHNTDYQGYMFPLLVQDQLAEW   67 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~--~~~~~l~-----~~~------~~~~~~~~~~~~~~f~~~~~~~~~~~   67 (121)
                      |.+|||++++|||+.+||+||++||||+.+.  ...+ ++     .+.      +.+..+..+...++|.+........ 
T Consensus        33 W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-  110 (148)
T PRK09438         33 WQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTL-IDCQRSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPV-  110 (148)
T ss_pred             EeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceee-cccccccccccchhhhhccccccCCceeEEEEEecCCCCcc-
Confidence            8999999999999999999999999999973  2221 11     111      1111122234567788775543222 


Q ss_pred             ccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHh
Q 033333           68 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  103 (121)
Q Consensus        68 ~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~  103 (121)
                      ..+|..+++|++++++.++...+..+.++..+.+++
T Consensus       111 ~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  146 (148)
T PRK09438        111 VLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRL  146 (148)
T ss_pred             ccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHh
Confidence            224888899999999999988899999998877664

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.84  E-value=2.7e-20  Score=117.08  Aligned_cols=98  Identities=26%  Similarity=0.212  Sum_probs=73.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeee--CCCCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS--RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~   78 (121)
                      |.+|||++++||++.+||.||++||||+.+..... ++.+....  .......+.++|.+...........+|..+++|+
T Consensus        29 w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~  107 (130)
T cd03428          29 WDFPKGHVEPGEDDLEAALRETEEETGITAEQLFI-VLGFKETLNYQVRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWL  107 (130)
T ss_pred             CcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh-hccceeEEEccccCcceEEEEEEEEeCCCCccccccceeeEEee
Confidence            89999999999999999999999999999877665 43332211  1122334567788776633222233678889999


Q ss_pred             eHHHHHHhcCchhHHHHHHHH
Q 033333           79 SVAEARKVCQHWWMKEALDRL   99 (121)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~   99 (121)
                      +++++.++...+.++.++.++
T Consensus       108 ~~~e~~~~~~~~~~~~~~~~~  128 (130)
T cd03428         108 PYEEALKLLTYEDLKAVLDKA  128 (130)
T ss_pred             cHHHHHHHcCchhHHHHHHHh
Confidence            999999999888888877765

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=6.3e-20  Score=115.86  Aligned_cols=101  Identities=21%  Similarity=0.132  Sum_probs=72.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEe-eeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF-KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.+|||++++|||+.+||.||++||||+++..... .+.+.+ ............+|.+.........+.+|..+++|++
T Consensus        29 w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~  107 (131)
T cd04695          29 WCHVAGGVEAGETAWQAALRELKEETGISLPELYN-ADYLEQFYEANDNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCS  107 (131)
T ss_pred             EECCcccccCCCCHHHHHHHHHHHHhCCCcccccc-ccceeeEeecCCceEEEEEEEEEEecCCCccccCchhcccEecC
Confidence            89999999999999999999999999999765432 222111 1111222344556766654433333446788899999


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHH
Q 033333           80 VAEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      ++++.++...+..+.++..+.+.
T Consensus       108 ~~e~~~~~~~~~~~~~~~~~~~~  130 (131)
T cd04695         108 FAEALELAPFPGQRALYDHVWRY  130 (131)
T ss_pred             HHHHHHhcCChhHHHHHHHHHhh
Confidence            99999999999999888876654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=2.1e-20  Score=117.04  Aligned_cols=87  Identities=13%  Similarity=0.100  Sum_probs=66.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccc-cCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~   79 (121)
                      |.+|||++++||++++||+||++||||+.+..... ++.+.+.......+.+.++|.+.......... .+|..+++|++
T Consensus        30 w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~  108 (125)
T cd04679          30 WGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRL-LCVVDHIIEEPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFA  108 (125)
T ss_pred             EeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceE-EEEEeecccCCCCeEEEEEEEEeecCCccccCCCccccEEEEeC
Confidence            89999999999999999999999999999887776 77765544333345566778777654433222 35778899999


Q ss_pred             HHHHHHhcC
Q 033333           80 VAEARKVCQ   88 (121)
Q Consensus        80 ~~~l~~~~~   88 (121)
                      ++++++.+.
T Consensus       109 ~~~l~~~l~  117 (125)
T cd04679         109 LDALPQPLT  117 (125)
T ss_pred             HHHCCchhH
Confidence            999977544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.83  E-value=1.5e-19  Score=114.33  Aligned_cols=99  Identities=22%  Similarity=0.365  Sum_probs=71.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccc-cccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~   79 (121)
                      |.+|||++++||++.+||.||++||||+.+..... ++.+.+.........+.++|.+........ ...++..++.|++
T Consensus        26 w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~  104 (134)
T cd03675          26 FNQPAGHLEPGESLIEAAVRETLEETGWHVEPTAL-LGIYQWTAPDSDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLT  104 (134)
T ss_pred             EECCCccCCCCCCHHHHHHHHHHHHHCcccccceE-EEEEEeecCCCCeeEEEEEEEEEECCCCCCCCCCCCceeeEEEe
Confidence            88999999999999999999999999999877666 776665444323334556677776654332 2335677899999


Q ss_pred             HHHHHHhc---CchhHHHHHHHHH
Q 033333           80 VAEARKVC---QHWWMKEALDRLV  100 (121)
Q Consensus        80 ~~~l~~~~---~~~~~~~~~~~~~  100 (121)
                      ++++..+.   ..+.+...+...+
T Consensus       105 ~~el~~~~~~~~~~~~~~~i~~~l  128 (134)
T cd03675         105 LEEILALAARLRSPLVLRCIEDYL  128 (134)
T ss_pred             HHHHHhhhhhhcCchHHHHHHHHH
Confidence            99999885   3454445544433

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.83  E-value=3.5e-20  Score=117.58  Aligned_cols=98  Identities=20%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.+|||+++.||++.+||+||++||||+.+..... ++.+.+...........++|.+........ ..++..+++|+++
T Consensus        28 w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~e~~~~~W~~~  105 (137)
T cd03427          28 WNGPGGKVEPGETPEECAIRELKEETGLTIDNLKL-VGIIKFPFPGEEERYGVFVFLATEFEGEPL-KESEEGILDWFDI  105 (137)
T ss_pred             EeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceE-EEEEEEEcCCCCcEEEEEEEEECCcccccC-CCCccccceEEcH
Confidence            89999999999999999999999999999988777 787766544323445566777665443322 2345567899999


Q ss_pred             HHHHHhcCchhHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLV  100 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~  100 (121)
                      +++..+...+..+.+++.++
T Consensus       106 ~el~~~~~~~~~~~~l~~~~  125 (137)
T cd03427         106 DDLPLLPMWPGDREWLPLML  125 (137)
T ss_pred             hhcccccCCCCcHHHHHHHh
Confidence            99988766677777776666

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.82  E-value=5.5e-20  Score=117.74  Aligned_cols=91  Identities=18%  Similarity=0.110  Sum_probs=69.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc-ccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~   79 (121)
                      |.||||++++||++++||+||++||||+++..... ++.+.+.... ......++|.+....... ....+|..+++|++
T Consensus        41 w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~  118 (142)
T cd04700          41 WHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF-LGTYLGRFDD-GVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFS  118 (142)
T ss_pred             EECCceecCCCCCHHHHHHHHHHHhhCceeeccEE-EEEEEEEcCC-CcEEEEEEEEEEecCCccccCCCCCEEEEEEEC
Confidence            89999999999999999999999999999987776 7776543332 233445777777654321 12236778899999


Q ss_pred             HHHHHHhcCchhHH
Q 033333           80 VAEARKVCQHWWMK   93 (121)
Q Consensus        80 ~~~l~~~~~~~~~~   93 (121)
                      ++++.+++..+.+.
T Consensus       119 ~~el~~~~~~g~i~  132 (142)
T cd04700         119 REDVAQLYAQGQLR  132 (142)
T ss_pred             HHHhhhcccccccc
Confidence            99999998776544

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.81  E-value=1.9e-19  Score=117.13  Aligned_cols=94  Identities=20%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeCC---C---CCeeEEEEEEeEecccccccccCCc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRA---H---NTDYQGYMFPLLVQDQLAEWPEKNV   72 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~~---~---~~~~~~~~f~~~~~~~~~~~~~~e~   72 (121)
                      |.||||+|++|||+++||+||++||||+.+..  ..+ ++.+.+....   .   ..+++.++|.+............|.
T Consensus        45 W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~  123 (159)
T PRK15434         45 WFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF-YGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQH  123 (159)
T ss_pred             EECCceecCCCCCHHHHHHHHHHHHHCCccccccceE-EEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHe
Confidence            99999999999999999999999999998643  233 5554432221   1   2245667777776654433334578


Q ss_pred             ceeEEEeHHHHHHhc-CchhHHHH
Q 033333           73 RSRKWMSVAEARKVC-QHWWMKEA   95 (121)
Q Consensus        73 ~~~~W~~~~~l~~~~-~~~~~~~~   95 (121)
                      .+++|++++++..+. .++..+.+
T Consensus       124 ~~~~W~~~~el~~~~~~~~~~~~~  147 (159)
T PRK15434        124 DDYRWLTPDALLASDNVHANSRAY  147 (159)
T ss_pred             eEEEEEeHHHhhhccccCHHHHHH
Confidence            899999999998863 33433333

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=2.1e-19  Score=114.44  Aligned_cols=99  Identities=19%  Similarity=0.194  Sum_probs=68.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeee------eEeeeCCC----CCeeEEEEEEeEeccccccc-cc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE------WNFKSRAH----NTDYQGYMFPLLVQDQLAEW-PE   69 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~------~~~~~~~~----~~~~~~~~f~~~~~~~~~~~-~~   69 (121)
                      |.+|||++++||++++||.||++||||+.+..... .+.      +.......    ...++.++|.+......... ..
T Consensus        28 w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~  106 (138)
T cd03674          28 WLQPGGHIDPDESLLEAALRELREETGIELLGLRP-LSVLVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKS  106 (138)
T ss_pred             EECCceecCCCCCHHHHHHHHHHHHHCCCccccee-ccccccceeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCC
Confidence            89999999999999999999999999998654433 221      11111111    12234456777655433222 44


Q ss_pred             CCcceeEEEeHHHHHHhcCchhHHHHHHHHH
Q 033333           70 KNVRSRKWMSVAEARKVCQHWWMKEALDRLV  100 (121)
Q Consensus        70 ~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~  100 (121)
                      +|..+++|++++++..+...+..+.++..++
T Consensus       107 ~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~  137 (138)
T cd03674         107 DESDAVRWFPLDELASLELPEDVRRLVEKAL  137 (138)
T ss_pred             CcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence            6778899999999987766677777777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=1.2e-19  Score=112.59  Aligned_cols=86  Identities=22%  Similarity=0.272  Sum_probs=65.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceee-eecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI-VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~-~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.+|||++++|||+++||+||++||||+.+. .... ++.+.+...  ......++|.+...........+|..+++|++
T Consensus        25 w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~  101 (120)
T cd04680          25 WYLPGGGLERGETFAEAARRELLEELGIRLAVVAEL-LGVYYHSAS--GSWDHVIVFRARADTQPVIRPSHEISEARFFP  101 (120)
T ss_pred             EeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccce-EEEEecCCC--CCceEEEEEEecccCCCccCCcccEEEEEEEC
Confidence            8999999999999999999999999999998 7666 777654432  22345577777765543333446778899999


Q ss_pred             HHHHHHhcCc
Q 033333           80 VAEARKVCQH   89 (121)
Q Consensus        80 ~~~l~~~~~~   89 (121)
                      ++++++++..
T Consensus       102 ~~~l~~~~~~  111 (120)
T cd04680         102 PDALPEPTTP  111 (120)
T ss_pred             HHHCcccCCh
Confidence            9999886553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=1.8e-19  Score=113.37  Aligned_cols=95  Identities=20%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE----eeeCCCCCeeEEEEEEeEecccccccccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN----FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~----~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~   76 (121)
                      |.+|||++++||++.+||+||++||||+.+..... ++.+.    +.....+.....++|++...........+|..+++
T Consensus        30 w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~  108 (129)
T cd04664          30 WQSVTGGIEDGESPAEAARREVAEETGLDPERLTL-LDRGASIAFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFE  108 (129)
T ss_pred             ccccCcccCCCCCHHHHHHHHHHHHHCCChhheEE-EeecccccccccCCCceEEEEeEEEEEcCCCCcccCCccccccE
Confidence            89999999999999999999999999999755444 44332    11111113345677888766543223345777899


Q ss_pred             EEeHHHHHHhcCchhHHHHH
Q 033333           77 WMSVAEARKVCQHWWMKEAL   96 (121)
Q Consensus        77 W~~~~~l~~~~~~~~~~~~~   96 (121)
                      |++++++.++...+.++.++
T Consensus       109 W~~~~e~~~~~~~~~~~~~~  128 (129)
T cd04664         109 WVPPEEAAALLLWESNRRAW  128 (129)
T ss_pred             ecCHHHHHHHHcChhhhhhh
Confidence            99999999998877666554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=2.7e-19  Score=111.19  Aligned_cols=89  Identities=22%  Similarity=0.254  Sum_probs=66.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCC----CCeeEEEEEEeEecccccccccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH----NTDYQGYMFPLLVQDQLAEWPEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~e~~~~~   76 (121)
                      |.||||++++||++++||.||++||||+++..... ++.+.+.....    ......++|.+....... .+.+|..+++
T Consensus        27 w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~  104 (122)
T cd04673          27 WSFPGGKVELGETLEQAALRELLEETGLEAEVGRL-LTVVDVIERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDAR  104 (122)
T ss_pred             EECCCcccCCCCCHHHHHHHHHHHhhCcEeeecee-EEEEEEeeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeE
Confidence            89999999999999999999999999999887776 77765544321    123344556666544332 3446778899


Q ss_pred             EEeHHHHHHhcCchh
Q 033333           77 WMSVAEARKVCQHWW   91 (121)
Q Consensus        77 W~~~~~l~~~~~~~~   91 (121)
                      |++++++.++...+.
T Consensus       105 w~~~~el~~~~~~~~  119 (122)
T cd04673         105 WVPLDELAALSLTES  119 (122)
T ss_pred             EECHHHHhhCcCCcc
Confidence            999999998765553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.80  E-value=5.1e-19  Score=113.53  Aligned_cols=85  Identities=19%  Similarity=0.257  Sum_probs=62.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeee--cceeeeeEeeeCC------CCCeeEEEEEEeEecccccccccCCc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--CELLGEWNFKSRA------HNTDYQGYMFPLLVQDQLAEWPEKNV   72 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~--~~~l~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~e~   72 (121)
                      |.||||+++.|||+++||+||++||||+.+...  .+ ++.+.+....      ...+++..+|.+.........+.++.
T Consensus        40 w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  118 (144)
T cd03430          40 WFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAEL-LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQH  118 (144)
T ss_pred             EECCCceecCCCCHHHHHHHHHHHHHCCCcccccceE-EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhc
Confidence            899999999999999999999999999998766  55 6665432221      12244556676665544333344678


Q ss_pred             ceeEEEeHHHHHHh
Q 033333           73 RSRKWMSVAEARKV   86 (121)
Q Consensus        73 ~~~~W~~~~~l~~~   86 (121)
                      .+++|+++++++++
T Consensus       119 ~~~~W~~~~el~~~  132 (144)
T cd03430         119 SEYQWLTSDELLAD  132 (144)
T ss_pred             cEeEEecHHHHhcC
Confidence            89999999999875

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=2.3e-19  Score=112.84  Aligned_cols=97  Identities=22%  Similarity=0.190  Sum_probs=66.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC--CCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA--HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~   78 (121)
                      |.+|||++++||++.+||.||++||||+++..... ++.+......  .......++|.+...........++..+++|+
T Consensus        29 w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~  107 (130)
T cd04681          29 LDLPGGFVDPGESAEEALIREIREETGLKVTELSY-LFSLPNTYPYGGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWV  107 (130)
T ss_pred             EeCCceeecCCCCHHHHHHHHHHHHhCCcccceeE-EEeecceeeeCCceeEEEEEEEEEEeCCCCCcCChHHhheeEEe
Confidence            89999999999999999999999999999876665 6654322221  11223345666766544332333677889999


Q ss_pred             eHHHHH-HhcCchhHHHHHHH
Q 033333           79 SVAEAR-KVCQHWWMKEALDR   98 (121)
Q Consensus        79 ~~~~l~-~~~~~~~~~~~~~~   98 (121)
                      +++++. ..+..+..+.+++.
T Consensus       108 ~~~el~~~~~~~~~~~~~~~~  128 (130)
T cd04681         108 VPQDIELENFAFPSIRQAVER  128 (130)
T ss_pred             cHHHCCcccCCcHHHHHHHHh
Confidence            999985 33455555555543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=3.7e-19  Score=111.48  Aligned_cols=89  Identities=21%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCC--CCeeEEEEEEeEeccccccc-------ccCC
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH--NTDYQGYMFPLLVQDQLAEW-------PEKN   71 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~-------~~~e   71 (121)
                      |.+|||++++||++.+||.||++||||+.+..... ++.+.+.....  ..+...++|.+.........       ..++
T Consensus        25 w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e  103 (126)
T cd04688          25 YRPPGGGIEFGESSEEALIREFKEELGLKIEITRL-LGVVENIFTYNGKPGHEIEFYYLVTLLDESLYQQDIEILEEEGE  103 (126)
T ss_pred             EECCCccccCCCCHHHHHHHHHHHHhCCceeccee-eEEEEEeeccCCcccEEEEEEEEEEeCCCcccccccceeccCCC
Confidence            89999999999999999999999999999888777 77755332222  23455678888876654322       2356


Q ss_pred             cceeEEEeHHHHHHhcCch
Q 033333           72 VRSRKWMSVAEARKVCQHW   90 (121)
Q Consensus        72 ~~~~~W~~~~~l~~~~~~~   90 (121)
                      ..+++|++++++..+...|
T Consensus       104 ~~~~~W~~~~~l~~~~~~p  122 (126)
T cd04688         104 KIVFRWIPIDELKEIKLYP  122 (126)
T ss_pred             EEEEEEeeHHHcccCccCC
Confidence            7789999999998764444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=8.1e-19  Score=109.84  Aligned_cols=93  Identities=18%  Similarity=0.114  Sum_probs=65.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC--C-CCeeEEEEEEeEecccccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA--H-NTDYQGYMFPLLVQDQLAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~--~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W   77 (121)
                      |.+|||++++|||+++||+||++||||+.+..... ++...+....  . ..+++.+.|.+..... .....++..+++|
T Consensus        28 w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W  105 (125)
T cd04696          28 WGVPGGKVEWGETLEEALKREFREETGLKLRDIKF-AMVQEAIFSEEFHKPAHFVLFDFFARTDGT-EVTPNEEIVEWEW  105 (125)
T ss_pred             EeCCceeccCCCCHHHHHHHHHHHHhCCcccccce-EEEEEEeccCCCCCccEEEEEEEEEEecCC-cccCCcccceeEE
Confidence            89999999999999999999999999999876665 5543332211  1 1233445566665432 2234467788999


Q ss_pred             EeHHHHHHhcCchhHHHH
Q 033333           78 MSVAEARKVCQHWWMKEA   95 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~   95 (121)
                      ++++++.++-..+..+++
T Consensus       106 ~~~~el~~~~~~~~~~~~  123 (125)
T cd04696         106 VTPEEALDYPLNSFTRLL  123 (125)
T ss_pred             ECHHHHhcCCCCHHHHHH
Confidence            999999988666655443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.80  E-value=3.1e-19  Score=111.95  Aligned_cols=104  Identities=47%  Similarity=0.829  Sum_probs=85.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCC--cceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN--VRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e--~~~~~W~   78 (121)
                      |.+|+|++|++|+..+||.||+.||+|+.........+...+.+..+......+.|.+.+.......|..+  ..+.+|+
T Consensus        38 wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~  117 (145)
T KOG2839|consen   38 WIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWL  117 (145)
T ss_pred             ccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhcccccceeehhhhhhhcccChhhhcccceeEEe
Confidence            89999999999999999999999999999988885255555665555555667788887777666666644  8889999


Q ss_pred             eHHHHHHhcCchhHHHHHHHHHHHhc
Q 033333           79 SVAEARKVCQHWWMKEALDRLVMRLT  104 (121)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~~~~~~  104 (121)
                      .++|+.....+..+..++..+.+.+.
T Consensus       118 ~ledA~~~~~~~~m~~al~e~~~~l~  143 (145)
T KOG2839|consen  118 KLEDAIELCQHKWMKAALEEFLQFLC  143 (145)
T ss_pred             eHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            99999999889999999888887654

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.80  E-value=3.2e-19  Score=114.55  Aligned_cols=86  Identities=22%  Similarity=0.232  Sum_probs=65.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccccc-CCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPE-KNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~~   79 (121)
                      |+||||+|+.|||+++||+||++||||+++....+ ++++....+....++..++|++........... ++...+.|++
T Consensus        37 WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~-~~v~~~~~rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~  115 (145)
T COG1051          37 WALPGGFVEIGETLEEAARRELKEETGLRVRVLEL-LAVFDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFP  115 (145)
T ss_pred             EeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeE-EEEecCCCCCCceeEEEEEEEEEecCCCcccCChhhHhhcceec
Confidence            99999999999999999999999999999988888 888876655433445555555554433222222 4677799999


Q ss_pred             HHHHHHhc
Q 033333           80 VAEARKVC   87 (121)
Q Consensus        80 ~~~l~~~~   87 (121)
                      +++++.+.
T Consensus       116 ~~~l~~~~  123 (145)
T COG1051         116 LDELPELP  123 (145)
T ss_pred             HhHccccc
Confidence            99998753

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.79  E-value=7.8e-19  Score=110.29  Aligned_cols=99  Identities=23%  Similarity=0.267  Sum_probs=74.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCC-eeEEEEEEeEecccc-ccccc-CCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT-DYQGYMFPLLVQDQL-AEWPE-KNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~-~~~~~~f~~~~~~~~-~~~~~-~e~~~~~W   77 (121)
                      |.+|||++++||++.+||+||++||||+.+..... ++.+.+....... ....++|.+...... ...+. .+..+++|
T Consensus        32 ~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W  110 (134)
T PF00293_consen   32 WELPGGGIEPGESPEEAARRELKEETGLDVSPLEL-LGLFSYPSPSGDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKW  110 (134)
T ss_dssp             EESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEE-EEEEEEEETTTESSEEEEEEEEEEEEEEESECHTTTTTEEEEEE
T ss_pred             EecceeeEEcCCchhhhHHhhhhhcccceeccccc-ceeeeecccCCCcccEEEEEEEEEEeCCccccCCCCccEEEEEE
Confidence            88999999999999999999999999999866665 6665555554332 345566666655544 22222 48888999


Q ss_pred             EeHHHHHHhcCchhHHHHHHHHH
Q 033333           78 MSVAEARKVCQHWWMKEALDRLV  100 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~~~  100 (121)
                      ++++++.++..++....+++.+.
T Consensus       111 ~~~~el~~~~~~~~~~~~i~~~~  133 (134)
T PF00293_consen  111 VPPDELLELLLNGRIRKIIPWLY  133 (134)
T ss_dssp             EEHHHHHHHHHTTHHHHHHHHHH
T ss_pred             EEHHHhhhchhCcchhhhhcccc
Confidence            99999999988887777766653

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.79  E-value=1.2e-18  Score=110.35  Aligned_cols=87  Identities=18%  Similarity=0.218  Sum_probs=62.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeec---ceeeeeEeeeCCCC-----CeeEEEEEEeEecccccccccCCc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC---ELLGEWNFKSRAHN-----TDYQGYMFPLLVQDQLAEWPEKNV   72 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~---~~l~~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~e~   72 (121)
                      |.||||++++|||+.+||.||++||||+.+....   ..++.+.+.++...     .....++|.+...+... .+.++.
T Consensus        28 W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~-~~~~e~  106 (132)
T cd04661          28 WILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSGQF-ELSQNQ  106 (132)
T ss_pred             eECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecCcc-ccCCCc
Confidence            9999999999999999999999999999866421   11333434332211     12356778887665433 234678


Q ss_pred             ceeEEEeHHHHHHhcC
Q 033333           73 RSRKWMSVAEARKVCQ   88 (121)
Q Consensus        73 ~~~~W~~~~~l~~~~~   88 (121)
                      .+++|++++++..++.
T Consensus       107 ~~~~W~~~~el~~~l~  122 (132)
T cd04661         107 VDFKWLAKEELQKYLN  122 (132)
T ss_pred             ceeEecCHHHHHhhcC
Confidence            8999999999998765

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.79  E-value=8.4e-19  Score=110.84  Aligned_cols=81  Identities=21%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.+|||+++.||++++||+||++||||+.+..... ++.+.+...    ..+.++|.+...........+|..+++|+++
T Consensus        27 w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~-l~~~~~~~~----~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~  101 (131)
T cd03429          27 YSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRY-VGSQPWPFP----SSLMLGFTAEADSGEIVVDDDELEDARWFSR  101 (131)
T ss_pred             CcCCcccccCCCCHHHHHhhhhhhccCceeeeeEE-EeecCCCCC----ceEEEEEEEEEcCCcccCCchhhhccEeecH
Confidence            89999999999999999999999999999877766 665433221    2345667776654332223367778999999


Q ss_pred             HHHHHh
Q 033333           81 AEARKV   86 (121)
Q Consensus        81 ~~l~~~   86 (121)
                      +++.++
T Consensus       102 ~el~~~  107 (131)
T cd03429         102 DEVRAA  107 (131)
T ss_pred             HHHhhc
Confidence            999884

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.2e-18  Score=109.46  Aligned_cols=89  Identities=21%  Similarity=0.270  Sum_probs=64.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC------CCCeeEEEEEEeEecccccc----cccC
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA------HNTDYQGYMFPLLVQDQLAE----WPEK   70 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~----~~~~   70 (121)
                      |.+|||++++||++++||.||++||||+.+..... ++.+.+....      ...+.+.++|.+........    .++.
T Consensus        27 ~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~  105 (128)
T cd04687          27 YILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPL-LFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDP  105 (128)
T ss_pred             EECCCcccCCCCCHHHHHHHHHHHHHCCccccCcE-EEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCC
Confidence            88999999999999999999999999999887665 5555543221      12344567777776554321    1233


Q ss_pred             CcceeEEEeHHHHHHhcCch
Q 033333           71 NVRSRKWMSVAEARKVCQHW   90 (121)
Q Consensus        71 e~~~~~W~~~~~l~~~~~~~   90 (121)
                      +..+++|++++++.++...|
T Consensus       106 ~~~~~~W~~~~~l~~~~~~p  125 (128)
T cd04687         106 NQIGVEWLKLKELGDIPLYP  125 (128)
T ss_pred             CEEeeEEEcHHHhCcccccC
Confidence            45679999999998875554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.1e-18  Score=107.37  Aligned_cols=87  Identities=21%  Similarity=0.216  Sum_probs=64.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.+|||++++||++.+||.||++||||+.+..... ++.+.    ..  ....++|.+.........+.++..+++|+++
T Consensus        23 w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~----~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   95 (112)
T cd04667          23 WALPGGKIEPGETPLQAARRELQEETGLQGLDLLY-LFHVD----GG--STRHHVFVASVPPSAQPKPSNEIADCRWLSL   95 (112)
T ss_pred             EeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEE-EEEEe----CC--CEEEEEEEEEcCCcCCCCCchheeEEEEecH
Confidence            89999999999999999999999999999766555 55432    11  2234667776554433334567788999999


Q ss_pred             HHHHHhcCchhHHH
Q 033333           81 AEARKVCQHWWMKE   94 (121)
Q Consensus        81 ~~l~~~~~~~~~~~   94 (121)
                      +++.++..++..+.
T Consensus        96 ~el~~~~~~~~~~~  109 (112)
T cd04667          96 DALGDLNASAATRL  109 (112)
T ss_pred             HHhhhcccchhhhh
Confidence            99999877664443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.4e-18  Score=108.53  Aligned_cols=96  Identities=21%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEe-----eeCCCC-CeeEEEEEEeEecccccccccCCcce
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF-----KSRAHN-TDYQGYMFPLLVQDQLAEWPEKNVRS   74 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~-----~~~~~~-~~~~~~~f~~~~~~~~~~~~~~e~~~   74 (121)
                      |.||||++++||++++||.||++||||+.+..... ++.+..     ....+. .....++|.+...........++..+
T Consensus        27 w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  105 (129)
T cd04676          27 WALPGGAVEPGESPADTAVREVREETGLDVEVTGL-VGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLD  105 (129)
T ss_pred             EECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEE-EEEeecccceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeE
Confidence            89999999999999999999999999999876554 444321     111111 13344556655544332234467778


Q ss_pred             eEEEeHHHHHHhcCchhHHHHHH
Q 033333           75 RKWMSVAEARKVCQHWWMKEALD   97 (121)
Q Consensus        75 ~~W~~~~~l~~~~~~~~~~~~~~   97 (121)
                      ++|++++++..+..++.++.+++
T Consensus       106 ~~w~~~~el~~~~~~~~~~~~~~  128 (129)
T cd04676         106 VAWFDPDGLPPLLMHPSMRLRID  128 (129)
T ss_pred             EEEEChhhCccccCCHhHHHHhc
Confidence            99999999999877776666553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=2.7e-18  Score=107.45  Aligned_cols=83  Identities=22%  Similarity=0.203  Sum_probs=60.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCC--CeeEEEEEEeEecccc---cccccCCccee
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN--TDYQGYMFPLLVQDQL---AEWPEKNVRSR   75 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~--~~~~~~~f~~~~~~~~---~~~~~~e~~~~   75 (121)
                      |.+|||++++||++.+||.||++||||+++..... ++.+.+.....+  .+.+.++|.+......   .....++..++
T Consensus        25 ~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~  103 (125)
T cd04689          25 YFLPGGHVEPGETAENALRRELQEELGVAVSDGRF-LGAIENQWHEKGVRTHEINHIFAVESSWLASDGPPQADEDHLSF  103 (125)
T ss_pred             EECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEE-EEEEeeeeccCCceEEEEEEEEEEEcccccccCCccCccceEEE
Confidence            88999999999999999999999999999887776 777654333222  2334566776654322   11223457789


Q ss_pred             EEEeHHHHH
Q 033333           76 KWMSVAEAR   84 (121)
Q Consensus        76 ~W~~~~~l~   84 (121)
                      +|++++++.
T Consensus       104 ~W~~~~el~  112 (125)
T cd04689         104 SWVPVSDLS  112 (125)
T ss_pred             EEccHHHcc
Confidence            999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=3e-18  Score=107.67  Aligned_cols=85  Identities=26%  Similarity=0.238  Sum_probs=64.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccc---cCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP---EKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~---~~e~~~~~W   77 (121)
                      |.+|||++++||++.+||.||++||||+.+..... ++.+.......+.++..++|.+..........   .++..+++|
T Consensus        30 w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W  108 (129)
T cd04678          30 WALPGGHLEFGESFEECAAREVLEETGLHIENVQF-LTVTNDVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEW  108 (129)
T ss_pred             EECCcccccCCCCHHHHHHHHHHHHhCCcccceEE-EEEEeEEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEE
Confidence            89999999999999999999999999999877666 77655433333445566777777665433222   245667899


Q ss_pred             EeHHHHHHh
Q 033333           78 MSVAEARKV   86 (121)
Q Consensus        78 ~~~~~l~~~   86 (121)
                      ++++++.++
T Consensus       109 ~~~~~l~~~  117 (129)
T cd04678         109 FDWEELPSV  117 (129)
T ss_pred             eCHHHCCCc
Confidence            999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.77  E-value=1.4e-18  Score=111.57  Aligned_cols=87  Identities=21%  Similarity=0.155  Sum_probs=62.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC--CCCeeEEEEEEeEeccccccc--cc-CCccee
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA--HNTDYQGYMFPLLVQDQLAEW--PE-KNVRSR   75 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~--~~-~e~~~~   75 (121)
                      |.+|||+++.||++.+||+||++||||+.+....+ ++.+.+....  ...+++.++|.+.........  .+ ++..++
T Consensus        36 W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~-l~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~  114 (144)
T PLN02325         36 FALPGGHLEFGESFEECAAREVKEETGLEIEKIEL-LTVTNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGW  114 (144)
T ss_pred             EECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-EEEecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCce
Confidence            89999999999999999999999999999988877 7775432221  223445566666654332111  12 345778


Q ss_pred             EEEeHHHHHHhcC
Q 033333           76 KWMSVAEARKVCQ   88 (121)
Q Consensus        76 ~W~~~~~l~~~~~   88 (121)
                      +|+++++++....
T Consensus       115 ~W~~~d~Lp~~~~  127 (144)
T PLN02325        115 DWYEWDNLPEPLF  127 (144)
T ss_pred             EEEChHHCChhhh
Confidence            9999999987544

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=1.8e-18  Score=107.38  Aligned_cols=85  Identities=19%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceee--eecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc-ccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI--VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW-PEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~--~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W   77 (121)
                      |.+|||++++||++.+||.||++||||+.+.  .... ++.+.+.... ....+.++|.+......... ..++..+++|
T Consensus        28 w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~-~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W  105 (120)
T cd04683          28 WALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRL-AHTMHRRTED-IESRIGLFFTVRRWSGEPRNCEPDKCAELRW  105 (120)
T ss_pred             EeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEEecCCC-CceEEEEEEEEEeecCccccCCCCcEeeEEE
Confidence            8999999999999999999999999999976  3333 5555433222 23344556666544333222 2356778999


Q ss_pred             EeHHHHHHhc
Q 033333           78 MSVAEARKVC   87 (121)
Q Consensus        78 ~~~~~l~~~~   87 (121)
                      ++++++...+
T Consensus       106 ~~~~~l~~~~  115 (120)
T cd04683         106 FPLDALPDDT  115 (120)
T ss_pred             EchHHCcchh
Confidence            9999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.77  E-value=3.8e-18  Score=108.90  Aligned_cols=96  Identities=16%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceee-eeE-----eeeCCCCCeeEEE---EEEeEecccccccccCC
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG-EWN-----FKSRAHNTDYQGY---MFPLLVQDQLAEWPEKN   71 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~-~~~-----~~~~~~~~~~~~~---~f~~~~~~~~~~~~~~e   71 (121)
                      |.+|||++++||++++||+||++||||+.+..... .. .+.     ..+..+......+   +|.+..... ...+.+|
T Consensus        33 W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E  110 (141)
T PRK15472         33 WALSGGGVEPGERIEEALRREIREELGEQLLLTEI-TPWTFRDDIRTKTYADGRKEEIYMIYLIFDCVSANR-DVKINEE  110 (141)
T ss_pred             eeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeee-ccccccccceeEEecCCCceeEEEEEEEEEeecCCC-cccCChh
Confidence            89999999999999999999999999998754331 11 110     1111111111112   233332222 2233467


Q ss_pred             cceeEEEeHHHHHHhcCchhHHHHHHH
Q 033333           72 VRSRKWMSVAEARKVCQHWWMKEALDR   98 (121)
Q Consensus        72 ~~~~~W~~~~~l~~~~~~~~~~~~~~~   98 (121)
                      ..+++|++++++.++...+..+.+++.
T Consensus       111 ~~~~~w~~~~el~~l~~~~~~~~~~~~  137 (141)
T PRK15472        111 FQDYAWVKPEDLVHYDLNVATRKTLRL  137 (141)
T ss_pred             hheEEEccHHHhccccccHHHHHHHHH
Confidence            788999999999998777766666553

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=2e-18  Score=107.82  Aligned_cols=90  Identities=12%  Similarity=0.065  Sum_probs=63.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC---CCCeeEEEEEEeEecccccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W   77 (121)
                      |.+|||++++||++.+||.||++||||+.+..... ++.+......   ...+.+..+|.+....... .+.+|..+++|
T Consensus        26 w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W  103 (123)
T cd04672          26 WSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKL-AAVDDRNKHHPPPQPYQVYKLFFLCEILGGEF-KPNIETSEVGF  103 (123)
T ss_pred             EeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEE-EEEeccccccCCCCceEEEEEEEEEEecCCcc-cCCCceeeeEE
Confidence            89999999999999999999999999999866555 6654322111   1123344566666654332 23367788999


Q ss_pred             EeHHHHHHhcCchhH
Q 033333           78 MSVAEARKVCQHWWM   92 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~   92 (121)
                      ++++++.++......
T Consensus       104 ~~~~el~~l~~~~~~  118 (123)
T cd04672         104 FALDDLPPLSEKRNT  118 (123)
T ss_pred             ECHHHCcccccCCcc
Confidence            999999887654433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.2e-18  Score=107.80  Aligned_cols=85  Identities=18%  Similarity=0.251  Sum_probs=63.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeCCC-CCeeEEEEEEeEecccccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAH-NTDYQGYMFPLLVQDQLAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W   77 (121)
                      |.||||++++||++++||.||++||||+.+..  ... ++.+.+..... +.....++|.+....  ...+.++..+++|
T Consensus        25 w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~e~~~~~W  101 (118)
T cd04690          25 FYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEY-LGTFRAPAANEPGVDVRATVYVAELTG--EPVPAAEIEEIRW  101 (118)
T ss_pred             EECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEecccccCCCcEEEEEEEEEcccC--CcCCCchhhccEE
Confidence            89999999999999999999999999999876  666 77665432222 234456777777654  2234467788999


Q ss_pred             EeHHHHHHhcC
Q 033333           78 MSVAEARKVCQ   88 (121)
Q Consensus        78 ~~~~~l~~~~~   88 (121)
                      ++++++.....
T Consensus       102 ~~~~e~~~~~~  112 (118)
T cd04690         102 VDYDDPADDRL  112 (118)
T ss_pred             ecHHHcccccc
Confidence            99999865433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.76  E-value=6.1e-18  Score=108.68  Aligned_cols=84  Identities=17%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEe-cccccc--cccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV-QDQLAE--WPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~--~~~~e~~~~~W   77 (121)
                      |.||||++++||++.+||+||++||||+.+..... ...  +........ ..++|.+.. ......  .+.+|..+++|
T Consensus        27 W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~--~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~E~~~~~W  102 (145)
T cd03672          27 WSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDD--YIELIIRGQ-NVKLYIVPGVPEDTPFEPKTRKEISKIEW  102 (145)
T ss_pred             EECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cce--eeecccCCc-EEEEEEEecCCCCcccCcCChhhhheEEE
Confidence            89999999999999999999999999999765321 122  222211121 234444432 222211  22357888999


Q ss_pred             EeHHHHHHhcC
Q 033333           78 MSVAEARKVCQ   88 (121)
Q Consensus        78 ~~~~~l~~~~~   88 (121)
                      ++++++..+..
T Consensus       103 v~~~el~~~~~  113 (145)
T cd03672         103 FDIKDLPTKKN  113 (145)
T ss_pred             eeHHHhhhhhh
Confidence            99999998754

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=3.8e-18  Score=106.41  Aligned_cols=83  Identities=25%  Similarity=0.251  Sum_probs=59.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc---------ccCC
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW---------PEKN   71 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---------~~~e   71 (121)
                      |.||||+++.||++.+||+||++||||+.+....+ ++.+.+  .  +.  ..++|.+.........         ...+
T Consensus        27 w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~-~~~~~~--~--~~--~~~~f~~~~~~g~~~~~~~~e~~~~~~~~   99 (121)
T cd04669          27 YVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI-FLIVNQ--N--GR--TEHYFLARVISGKLGLGVGEEFERQSDDN   99 (121)
T ss_pred             EECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeE-EEEEee--C--Cc--EEEEEEEEEECCeecCCCchhhcccCCCC
Confidence            89999999999999999999999999999977666 666554  1  11  2356666544322111         1223


Q ss_pred             cceeEEEeHHHHHHhcCch
Q 033333           72 VRSRKWMSVAEARKVCQHW   90 (121)
Q Consensus        72 ~~~~~W~~~~~l~~~~~~~   90 (121)
                      ..+++|++++++..+...|
T Consensus       100 ~~~~~Wv~~~el~~l~~~p  118 (121)
T cd04669         100 QYHPVWVDLDQLETIPLRP  118 (121)
T ss_pred             ceEEEEEEHHHcccCCCCC
Confidence            4568999999999875544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=4.1e-18  Score=107.29  Aligned_cols=88  Identities=22%  Similarity=0.216  Sum_probs=60.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE----eeeCCCC-CeeEEEE-EEeEecccccccccCCcce
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN----FKSRAHN-TDYQGYM-FPLLVQDQLAEWPEKNVRS   74 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~----~~~~~~~-~~~~~~~-f~~~~~~~~~~~~~~e~~~   74 (121)
                      |.||||++++||++.+||.||++||||+.+..... ++.+.    +.....+ ......+ |+..........+.++..+
T Consensus        32 w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  110 (132)
T cd04677          32 WGLPGGAMELGESLEETARRELKEETGLEVEELEL-LGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLE  110 (132)
T ss_pred             EECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEE-EEEecCCceeecCCCCcEEEEEEEEEEEeccCCcccCCCCceee
Confidence            89999999999999999999999999999887766 65542    2111111 1223333 3333322222334467788


Q ss_pred             eEEEeHHHHHHhcCc
Q 033333           75 RKWMSVAEARKVCQH   89 (121)
Q Consensus        75 ~~W~~~~~l~~~~~~   89 (121)
                      ++|++++++..+...
T Consensus       111 ~~W~~~~e~~~~~~~  125 (132)
T cd04677         111 LKFFSLDELPELINP  125 (132)
T ss_pred             EEEEChhHCccchhH
Confidence            999999999876553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.76  E-value=1.2e-17  Score=107.43  Aligned_cols=98  Identities=17%  Similarity=0.241  Sum_probs=65.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeee----EeeeCCC---------CCeeEEEEEEeEecc--cc-
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW----NFKSRAH---------NTDYQGYMFPLLVQD--QL-   64 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~----~~~~~~~---------~~~~~~~~f~~~~~~--~~-   64 (121)
                      |.+|||++++||++.+||+||++||||+.+....+ ++..    .|.....         ......++|++....  .. 
T Consensus        29 W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~-l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  107 (147)
T cd03671          29 WQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEI-IAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEI  107 (147)
T ss_pred             EECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEE-EEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccc
Confidence            89999999999999999999999999999766554 5542    2222110         011234566655543  11 


Q ss_pred             cccc--cCCcceeEEEeHHHHHHhcCchhHHHHHHHHH
Q 033333           65 AEWP--EKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  100 (121)
Q Consensus        65 ~~~~--~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~  100 (121)
                      ...+  .+|..+++|++++++.++.. +....++.++.
T Consensus       108 ~l~~~~~~E~~~~~W~~~~el~~~~~-~~~~~~~~~~~  144 (147)
T cd03671         108 DLNAPEHPEFDEWRWVPLEELPDLIV-PFKRPVYEAVL  144 (147)
T ss_pred             cCCCCCCCCEeeEEeCCHHHHHHhch-hhhHHHHHHHH
Confidence            1122  35788899999999999865 33444555443

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.76  E-value=3.3e-18  Score=108.55  Aligned_cols=88  Identities=20%  Similarity=0.055  Sum_probs=64.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc--ccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA--EWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~e~~~~~W~   78 (121)
                      |.+|||+++.||++.+||+||++||||+.+..... ++.+.+.  ........++|.+.......  ....+|..+++|+
T Consensus        31 w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~  107 (137)
T cd03424          31 LELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK-LGSFYPS--PGFSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLV  107 (137)
T ss_pred             EEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEE-EeeEecC--CcccCccEEEEEEEcccccccCCCCCCCeeEEEEe
Confidence            88999999999999999999999999999865554 6655332  12222345667766655432  2234678889999


Q ss_pred             eHHHHHHhcCchh
Q 033333           79 SVAEARKVCQHWW   91 (121)
Q Consensus        79 ~~~~l~~~~~~~~   91 (121)
                      +++++.+++....
T Consensus       108 ~~~el~~~~~~~~  120 (137)
T cd03424         108 PLDEALELLADGE  120 (137)
T ss_pred             cHHHHHHHHHcCC
Confidence            9999999876554

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=6.4e-18  Score=105.98  Aligned_cols=83  Identities=20%  Similarity=0.284  Sum_probs=56.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc-c-ccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL-A-EWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~-~~~~~e~~~~~W~   78 (121)
                      |.+|||++++|||+++||.||++||||+.+..... ++...+......  ....+|.+...... . ....+|..+++|+
T Consensus        29 w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~  105 (127)
T cd04670          29 WKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSV-VGFRHAHPGAFG--KSDLYFICRLKPLSFDINFDTSEIAAAKWM  105 (127)
T ss_pred             EECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEE-EEEEecCCCCcC--ceeEEEEEEEccCcCcCCCChhhhheeEEE
Confidence            89999999999999999999999999999876664 554332211111  12233444443211 1 1223567789999


Q ss_pred             eHHHHHHh
Q 033333           79 SVAEARKV   86 (121)
Q Consensus        79 ~~~~l~~~   86 (121)
                      +++++.+.
T Consensus       106 ~~~el~~~  113 (127)
T cd04670         106 PLEEYISQ  113 (127)
T ss_pred             cHHHHhcc
Confidence            99999665

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=3.9e-18  Score=105.81  Aligned_cols=81  Identities=22%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++++||+||++||||+++..... ++.+.+..  . .....++|.+.......  ..+|..+++|+++
T Consensus        29 w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~--~-~~~~~~~~~~~~~~~~~--~~~E~~~~~W~~~  102 (117)
T cd04691          29 LNIPGGHIEAGESQEEALLREVQEELGVDPLSYTY-LCSLYHPT--S-ELQLLHYYVVTFWQGEI--PAQEAAEVHWMTA  102 (117)
T ss_pred             EECcceeecCCCCHHHHHHHHHHHHHCCCcccceE-EEEEeccC--C-CeEEEEEEEEEEecCCC--CcccccccEEcCH
Confidence            89999999999999999999999999999754444 55543322  1 22345666666543322  2367888999999


Q ss_pred             HHHHHhc
Q 033333           81 AEARKVC   87 (121)
Q Consensus        81 ~~l~~~~   87 (121)
                      ++++.+.
T Consensus       103 ~~l~~~~  109 (117)
T cd04691         103 NDIVLAS  109 (117)
T ss_pred             HHcchhh
Confidence            9998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.9e-18  Score=108.18  Aligned_cols=84  Identities=19%  Similarity=0.198  Sum_probs=60.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc---ccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW---PEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~W   77 (121)
                      |.+|||+++.||++++||+||++||||+.+....+ ++....  .   .....++|.+...+.....   +..+..+++|
T Consensus        28 w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~--~---~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W  101 (123)
T cd04671          28 WYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTL-LSVEEQ--G---GSWFRFVFTGNITGGDLKTEKEADSESLQARW  101 (123)
T ss_pred             EECceeecCCCCCHHHHHHHHHHHHHCCeeecceE-EEEEcc--C---CeEEEEEEEEEEeCCeEccCCCCCcceEEEEE
Confidence            89999999999999999999999999999987766 654321  1   2234567777655432211   2245668999


Q ss_pred             EeHHHHHHhcCch
Q 033333           78 MSVAEARKVCQHW   90 (121)
Q Consensus        78 ~~~~~l~~~~~~~   90 (121)
                      +++++++..+...
T Consensus       102 ~~~~el~~~~~~~  114 (123)
T cd04671         102 YSNKDLPLPLRAH  114 (123)
T ss_pred             ECHHHCCCccchh
Confidence            9999995444433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=9.2e-18  Score=105.32  Aligned_cols=87  Identities=22%  Similarity=0.089  Sum_probs=58.3

Q ss_pred             CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeecc-eeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333            1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~   78 (121)
                      |.+| ||++++||++ +||+||++||||+.+..... .++.+.+...   .....++|.+...........+|..+++|+
T Consensus        30 w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~  105 (127)
T cd04693          30 WDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE---GFDDYYLFYADVEIGKLILQKEEVDEVKFV  105 (127)
T ss_pred             ccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC---CeEEEEEEEecCcccccccCHHHhhhEEEe
Confidence            8897 9999999999 99999999999999764332 1344433221   122233444433332222233677889999


Q ss_pred             eHHHHHHhcCchh
Q 033333           79 SVAEARKVCQHWW   91 (121)
Q Consensus        79 ~~~~l~~~~~~~~   91 (121)
                      +++++.+++.+..
T Consensus       106 ~~~el~~~~~~~~  118 (127)
T cd04693         106 SKDEIDGLIGHGE  118 (127)
T ss_pred             CHHHHHHHHhcCC
Confidence            9999999876553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.74  E-value=2.5e-17  Score=109.26  Aligned_cols=101  Identities=25%  Similarity=0.302  Sum_probs=68.8

Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeHH
Q 033333            2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVA   81 (121)
Q Consensus         2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~   81 (121)
                      .+|||++++||++.+||+|||+||||+.+..... ++.+.+...  .......+|.+.... ......+|..+++|++++
T Consensus        69 ~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~-~~~~~~~E~~~~~W~~~~  144 (180)
T PRK15393         69 ATAGGVVQAGEQLLESARREAEEELGIAGVPFAE-HGQFYFEDE--NCRVWGALFSCVSHG-PFALQEEEVSEVCWMTPE  144 (180)
T ss_pred             ccCCCcCCCCCCHHHHHHHHHHHHHCCCCcccee-ceeEEecCC--CceEEEEEEEEEeCC-CCCCChHHeeEEEECCHH
Confidence            6899999999999999999999999998665554 666544322  222333456554332 222233577889999999


Q ss_pred             HHHHhc--CchhHHHHHHHHHHHhccc
Q 033333           82 EARKVC--QHWWMKEALDRLVMRLTSQ  106 (121)
Q Consensus        82 ~l~~~~--~~~~~~~~~~~~~~~~~~~  106 (121)
                      ++.++.  ..+.....+...+.+..+.
T Consensus       145 el~~~~~~~~~~~~~~l~~~l~~~~~~  171 (180)
T PRK15393        145 EITARCDEFTPDSLKALALWLTRNAKN  171 (180)
T ss_pred             HHhhhhhhcCccHHHHHHHHHHhhccc
Confidence            999873  3355566666666655543

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=2e-17  Score=103.79  Aligned_cols=86  Identities=23%  Similarity=0.308  Sum_probs=63.2

Q ss_pred             Ccc-CCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~l-PgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.+ |||++++||++++||+||++||||+.+..... ++.+.+...  ......++|.+...... ....+|..+++|++
T Consensus        30 w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~-~~~~~~~~~--~~~~~~~~f~~~~~~~~-~~~~~E~~~~~w~~  105 (126)
T cd04697          30 WDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTP-LGLFYYDTD--GNRVWGKVFSCVYDGPL-KLQEEEVEEITWLS  105 (126)
T ss_pred             ccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEE-eeEEEecCC--CceEEEEEEEEEECCCC-CCCHhHhhheEEcC
Confidence            778 69999999999999999999999999876555 666654332  22334466766654322 22336778899999


Q ss_pred             HHHHHHhcCch
Q 033333           80 VAEARKVCQHW   90 (121)
Q Consensus        80 ~~~l~~~~~~~   90 (121)
                      ++++.+++...
T Consensus       106 ~~el~~~~~~~  116 (126)
T cd04697         106 INEILQFKEGE  116 (126)
T ss_pred             HHHHHHHhhcC
Confidence            99999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=1.5e-17  Score=103.74  Aligned_cols=85  Identities=21%  Similarity=0.079  Sum_probs=60.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc-cccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL-AEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~   79 (121)
                      |.||||+++.||++++||.||++||||+.+..... .....+...  ......++|.+...... .....+|..+++|++
T Consensus        31 w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~  107 (122)
T cd04682          31 WDLPGGHREGGETPLECVLRELLEEIGLTLPESRI-PWFRVYPSA--SPPGTEHVFVVPLTAREDAILFGDEGQALRLMT  107 (122)
T ss_pred             EeCCCccccCCCCHHHHHHHHHHHHhCCccccccc-ceeEecccC--CCCceEEEEEEEEecCCCccccCchhheeeccc
Confidence            89999999999999999999999999999864333 222223222  12234567776655443 223346778899999


Q ss_pred             HHHHHHhcC
Q 033333           80 VAEARKVCQ   88 (121)
Q Consensus        80 ~~~l~~~~~   88 (121)
                      ++++.+..+
T Consensus       108 ~~el~~~~~  116 (122)
T cd04682         108 VEEFLAHED  116 (122)
T ss_pred             HHHHhhccc
Confidence            999977643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.73  E-value=3.6e-17  Score=103.44  Aligned_cols=97  Identities=16%  Similarity=0.070  Sum_probs=71.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||.||++||||+.+..... ++.+.+...  +.....++|.+......  ....+..+++|+++
T Consensus        32 w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~  106 (135)
T PRK10546         32 WEFAGGKVEPGESQPQALIRELREELGIEATVGEY-VASHQREVS--GRRIHLHAWHVPDFHGE--LQAHEHQALVWCTP  106 (135)
T ss_pred             EECCcccCCCCCCHHHHHHHHHHHHHCCcccccee-EEEEEEecC--CcEEEEEEEEEEEecCc--ccccccceeEEcCH
Confidence            89999999999999999999999999999877665 666554433  23334455655543222  12235667899999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      +++..+...+..+.++..+.+.
T Consensus       107 ~el~~~~~~~~~~~~l~~~~~~  128 (135)
T PRK10546        107 EEALRYPLAPADIPLLEAFMAL  128 (135)
T ss_pred             HHcccCCCCcCcHHHHHHHHHh
Confidence            9999987778788888777665

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.73  E-value=2.1e-17  Score=114.86  Aligned_cols=88  Identities=15%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.+|||++++|||+++||+||++||||+++..... ++...+..+    ....+.|.+...........+|..+++|+++
T Consensus       158 wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~-~~s~~~~~p----~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~  232 (256)
T PRK00241        158 YTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRY-VGSQPWPFP----HSLMLGFHADYDSGEIVFDPKEIADAQWFRY  232 (256)
T ss_pred             EeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEE-EEeEeecCC----CeEEEEEEEEecCCcccCCcccEEEEEEECH
Confidence            88999999999999999999999999999887776 665443222    2345677777654432223357788999999


Q ss_pred             HHHHHhcCchhHH
Q 033333           81 AEARKVCQHWWMK   93 (121)
Q Consensus        81 ~~l~~~~~~~~~~   93 (121)
                      ++++.+.....+.
T Consensus       233 del~~lp~~~sia  245 (256)
T PRK00241        233 DELPLLPPSGTIA  245 (256)
T ss_pred             HHCcccCCchHHH
Confidence            9998876555433

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.73  E-value=1.1e-17  Score=108.83  Aligned_cols=83  Identities=20%  Similarity=0.073  Sum_probs=59.7

Q ss_pred             CccCCcccCCC-CCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccccc-CCcceeEEE
Q 033333            1 MLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPE-KNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~g-E~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~   78 (121)
                      |.||||++++| |++++||+||++||||+.+..... ++.+.......+  ..+++|.+.........++ +|..+++|+
T Consensus        34 w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~E~~~~~W~  110 (157)
T cd03426          34 VAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEV-LGRLPPYYTRSG--FVVTPVVGLVPPPLPLVLNPDEVAEVFEV  110 (157)
T ss_pred             EECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEE-EEECCCccccCC--CEEEEEEEEECCCCCCCCCHHHhheeEEE
Confidence            88999999999 999999999999999999877666 665442222222  2345555554443222223 577889999


Q ss_pred             eHHHHHHh
Q 033333           79 SVAEARKV   86 (121)
Q Consensus        79 ~~~~l~~~   86 (121)
                      +++++.+.
T Consensus       111 ~~~el~~~  118 (157)
T cd03426         111 PLSFLLDP  118 (157)
T ss_pred             cHHHHhCc
Confidence            99999875

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.72  E-value=2.5e-17  Score=109.67  Aligned_cols=91  Identities=20%  Similarity=0.011  Sum_probs=66.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccc-cCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~   79 (121)
                      |+||||.+|+||++++||+||++||||+.+..... ++.+... + +......++|.+.......... +.|..+..|++
T Consensus        76 ~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~-l~~~~~~-~-~~~~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~  152 (185)
T PRK11762         76 LGFPKGLIDPGETPLEAANRELKEEVGFGARQLTF-LKELSLA-P-SYFSSKMNIVLAEDLYPERLEGDEPEPLEVVRWP  152 (185)
T ss_pred             EEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-EEEEecC-C-CccCcEEEEEEEEccccccCCCCCCceeEEEEEc
Confidence            78999999999999999999999999999988877 7775432 2 2223345666665432222222 35667889999


Q ss_pred             HHHHHHhcCchhHHH
Q 033333           80 VAEARKVCQHWWMKE   94 (121)
Q Consensus        80 ~~~l~~~~~~~~~~~   94 (121)
                      ++++.+++.++.+.+
T Consensus       153 ~~e~~~~~~~g~i~d  167 (185)
T PRK11762        153 LADLDELLARPDFSE  167 (185)
T ss_pred             HHHHHHHHHcCCCCc
Confidence            999999877665543

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=4.1e-17  Score=103.10  Aligned_cols=85  Identities=26%  Similarity=0.323  Sum_probs=57.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCcee-eeecceeeeeEeeeC--CC-C--CeeEEEEEEeEeccccccc-cc-CC-
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGEWNFKSR--AH-N--TDYQGYMFPLLVQDQLAEW-PE-KN-   71 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~-~~~~~~l~~~~~~~~--~~-~--~~~~~~~f~~~~~~~~~~~-~~-~e-   71 (121)
                      |.||||++++||++.+||+||++||||+.+ ..... ++.+.....  .. .  .+...++|.+......... .. .+ 
T Consensus        24 w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  102 (131)
T cd04686          24 YKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEK-FGTYTERRPWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEA  102 (131)
T ss_pred             EECccccCCCCCCHHHHHHHHHHHHHCCcccccceE-EEEEEeeccccCCCCceeEEEEEEEEEEEcCCcCCcccchhhH
Confidence            899999999999999999999999999986 44444 666542211  11 1  1334577777765433211 11 11 


Q ss_pred             --cceeEEEeHHHHHHh
Q 033333           72 --VRSRKWMSVAEARKV   86 (121)
Q Consensus        72 --~~~~~W~~~~~l~~~   86 (121)
                        ...++|++++++...
T Consensus       103 ~~~~~~~W~~~~ea~~~  119 (131)
T cd04686         103 ELGMKPIWINIHEAIEH  119 (131)
T ss_pred             hcCCCcEEecHHHHHHh
Confidence              235899999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=4.1e-17  Score=102.88  Aligned_cols=78  Identities=21%  Similarity=0.177  Sum_probs=60.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.+|||++++||++++||.||++||||+++..... ++.+..  +  ......++|.+...... .....|..+++|+++
T Consensus        40 w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~-~~~~~~--~--~~~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~  113 (130)
T cd04511          40 WTLPAGFMENGETTEQGALRETWEEAGARVEIDGL-YAVYSV--P--HISQVYMFYRARLLDLD-FAPGPESLEVRLFTE  113 (130)
T ss_pred             EECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeE-EEEEec--C--CceEEEEEEEEEEcCCc-ccCCcchhceEEECH
Confidence            89999999999999999999999999999876655 665543  2  22345577888775543 234456788999999


Q ss_pred             HHHH
Q 033333           81 AEAR   84 (121)
Q Consensus        81 ~~l~   84 (121)
                      ++++
T Consensus       114 ~~l~  117 (130)
T cd04511         114 EEIP  117 (130)
T ss_pred             HHCC
Confidence            9996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=5.9e-17  Score=103.81  Aligned_cols=87  Identities=14%  Similarity=0.077  Sum_probs=59.8

Q ss_pred             Ccc-CCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeC-CC--CCeeEEEEEEeEeccc--ccccccCCc
Q 033333            1 MLF-PKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSR-AH--NTDYQGYMFPLLVQDQ--LAEWPEKNV   72 (121)
Q Consensus         1 W~l-PgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~-~~--~~~~~~~~f~~~~~~~--~~~~~~~e~   72 (121)
                      |.+ |||++++||++++||+||++||||+.+..  +.. ++.+.+... ..  ......++|.+.....  ......+|.
T Consensus        35 W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~  113 (144)
T cd04692          35 WDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIP-LGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEV  113 (144)
T ss_pred             cccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEE-eeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHh
Confidence            778 59999999999999999999999998643  333 555544332 11  1123446666665431  222233677


Q ss_pred             ceeEEEeHHHHHHhcC
Q 033333           73 RSRKWMSVAEARKVCQ   88 (121)
Q Consensus        73 ~~~~W~~~~~l~~~~~   88 (121)
                      .+++|++++++.+++.
T Consensus       114 ~~~~W~~~~el~~~~~  129 (144)
T cd04692         114 AGVVLIPLDEFAELLE  129 (144)
T ss_pred             heEEEECHHHHHHHHH
Confidence            8899999999988753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.70  E-value=1.5e-16  Score=114.71  Aligned_cols=99  Identities=18%  Similarity=0.176  Sum_probs=66.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeee------eEeeeCCCCCeeEEEEEEeEecccc--cccccCCc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE------WNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNV   72 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~------~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~   72 (121)
                      |.+|||++++||++++||+||++||||+++..... .+.      +.++..........++|.+......  .....++.
T Consensus       230 W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l-~~~~~~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~  308 (340)
T PRK05379        230 WALPGGFLEQDETLLDACLRELREETGLKLPEPVL-RGSIRDQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDA  308 (340)
T ss_pred             EECCcccCCCCCCHHHHHHHHHHHHHCCccccccc-ceeeeeeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCce
Confidence            89999999999999999999999999998755443 332      2222221122345566766654332  12234677


Q ss_pred             ceeEEEeHHHHHHh--cCchhHHHHHHHHH
Q 033333           73 RSRKWMSVAEARKV--CQHWWMKEALDRLV  100 (121)
Q Consensus        73 ~~~~W~~~~~l~~~--~~~~~~~~~~~~~~  100 (121)
                      .+++|++++++..+  ....+...++..++
T Consensus       309 ~~~~W~~~~el~~~~~~~~~dh~~ii~~~~  338 (340)
T PRK05379        309 DKARWVPLAELLAMRDRMFEDHFQIITHFL  338 (340)
T ss_pred             eeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence            88999999999875  33455556665543

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.70  E-value=1.3e-16  Score=104.48  Aligned_cols=88  Identities=16%  Similarity=0.160  Sum_probs=62.5

Q ss_pred             CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeeccee-eeeEeeeCCCC---CeeEEEEEEeEecccccccccCCccee
Q 033333            1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELL-GEWNFKSRAHN---TDYQGYMFPLLVQDQLAEWPEKNVRSR   75 (121)
Q Consensus         1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l-~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~e~~~~   75 (121)
                      |.+| ||++++||++++||+||++||||+.+..... + +.+.|......   ...+.++|.+....... ...+|..++
T Consensus        60 w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~-~~~~Ev~~~  137 (165)
T cd02885          60 WTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLEL-VLPRFRYRAPDDGGLVEHEIDHVFFARADVTLI-PNPDEVSEY  137 (165)
T ss_pred             ccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhh-ccceEEEEEEcCCCceeeEEEEEEEEEeCCCCC-CCccceeEE
Confidence            6665 7999999999999999999999999877665 4 55544432211   12345667666544332 233677889


Q ss_pred             EEEeHHHHHHhcCch
Q 033333           76 KWMSVAEARKVCQHW   90 (121)
Q Consensus        76 ~W~~~~~l~~~~~~~   90 (121)
                      +|++++++.+++...
T Consensus       138 ~w~~~~el~~~~~~~  152 (165)
T cd02885         138 RWVSLEDLKELVAAA  152 (165)
T ss_pred             EEECHHHHHHHHHhC
Confidence            999999999986543

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=2e-16  Score=98.97  Aligned_cols=85  Identities=19%  Similarity=0.121  Sum_probs=57.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCC-CeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN-TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.||||++++||++.+||.||++||||+.+..... ++...+. .... .....++|.+..... .....++..+++|++
T Consensus        31 w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~w~~  107 (129)
T cd04699          31 WELPGGKVEEGETFEEALKREVYEETGLTVTPFLR-YPSTVTH-EDSGVYNVIYLVFVCEALSG-AVKLSDEHEEYAWVT  107 (129)
T ss_pred             CcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee-eeEEEEE-cCCCEEEEEEEEEEeeecCC-cccCChhheEEEEec
Confidence            89999999999999999999999999999877654 3332222 2221 223334455443332 122335667889999


Q ss_pred             HHHHHHhcC
Q 033333           80 VAEARKVCQ   88 (121)
Q Consensus        80 ~~~l~~~~~   88 (121)
                      ++++..+..
T Consensus       108 ~~el~~~~~  116 (129)
T cd04699         108 LEELAILKA  116 (129)
T ss_pred             HHHhhhhhc
Confidence            999965543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.70  E-value=2e-16  Score=102.80  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=68.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeee----EeeeCC-------CCC-eeEEEEEEeEeccc-cc--
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW----NFKSRA-------HNT-DYQGYMFPLLVQDQ-LA--   65 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~----~~~~~~-------~~~-~~~~~~f~~~~~~~-~~--   65 (121)
                      |.+|||++++||++++||.||++||||+.+..... ++.+    .|..+.       ... ....++|++..... ..  
T Consensus        34 w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~  112 (156)
T PRK00714         34 WQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEI-LAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEIN  112 (156)
T ss_pred             EECCcccCCCCcCHHHHHHHHHHHHhCCCccceEE-EEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCcccc
Confidence            89999999999999999999999999999865554 5542    221111       000 11346677665322 11  


Q ss_pred             cc--ccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHhcc
Q 033333           66 EW--PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  105 (121)
Q Consensus        66 ~~--~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~  105 (121)
                      ..  ..+|..+++|++++++++++. +..+.++..+.+.+..
T Consensus       113 l~~~~~~E~~~~~W~~~del~~~~~-~~~r~~~~~~~~~~~~  153 (156)
T PRK00714        113 LNTTSHPEFDAWRWVSYWYPLDQVV-PFKRDVYRRVLKEFAR  153 (156)
T ss_pred             CCCCCCCCeeeeEeCCHHHHHHhch-hhhHHHHHHHHHHHHH
Confidence            11  225778899999999998764 3346677776666543

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.70  E-value=6.5e-17  Score=107.68  Aligned_cols=92  Identities=21%  Similarity=0.122  Sum_probs=68.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc----ccccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA----EWPEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~   76 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+ +..+ +......++|++.......    ...++|..+..
T Consensus        79 lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~-~~~~-~~~~-g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~  155 (185)
T TIGR00052        79 LELSAGMVEKGESPEDVARREAIEEAGYQVKNLRK-LLSF-YSSP-GGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVL  155 (185)
T ss_pred             EEECcEecCCCCCHHHHHHHHccccccceecceEE-EEEE-EcCC-CCCcEEEEEEEEEEchhhcCCCCCCCCccceEEE
Confidence            68999999999999999999999999999987666 6654 2222 3334567888887654321    11235667789


Q ss_pred             EEeHHHHHHhcCchhHHHH
Q 033333           77 WMSVAEARKVCQHWWMKEA   95 (121)
Q Consensus        77 W~~~~~l~~~~~~~~~~~~   95 (121)
                      |++++++.+++.++.+.+.
T Consensus       156 ~~~~~e~~~~~~~G~i~d~  174 (185)
T TIGR00052       156 HLVFSQALQWIKEGKIDNG  174 (185)
T ss_pred             EeCHHHHHHHHHcCCCCCH
Confidence            9999999999877765544

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.68  E-value=3.4e-16  Score=105.50  Aligned_cols=91  Identities=20%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccc----ccccc-cCCccee
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ----LAEWP-EKNVRSR   75 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~-~~e~~~~   75 (121)
                      |++|+|.+|+||++++||+|||.||||+.+..... ++.+ +.++ +......++|++.....    ..... ..|..++
T Consensus        84 lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~-l~~~-~~sp-g~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v  160 (202)
T PRK10729         84 LEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKP-VLSY-LASP-GGTSERSSIMVGEVDATTASGIHGLADENEDIRV  160 (202)
T ss_pred             EEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEE-EEEE-EcCC-CcCceEEEEEEEEEcchhcccCCCCCCCCCceEE
Confidence            78999999999999999999999999999887666 6554 3323 33345668888875221    11122 2566789


Q ss_pred             EEEeHHHHHHhcCchhHHH
Q 033333           76 KWMSVAEARKVCQHWWMKE   94 (121)
Q Consensus        76 ~W~~~~~l~~~~~~~~~~~   94 (121)
                      .|++++++.+++.++.+.+
T Consensus       161 ~~~~~~e~~~~~~~G~i~d  179 (202)
T PRK10729        161 HVVSREQAYQWVEEGKIDN  179 (202)
T ss_pred             EEEcHHHHHHHHHcCCCCc
Confidence            9999999999877665553

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.67  E-value=5.6e-16  Score=96.87  Aligned_cols=94  Identities=17%  Similarity=0.141  Sum_probs=66.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||.||++||||+.+..... ++.+.+..++  .....++|.+......  ....|..+.+|+++
T Consensus        33 w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~  107 (129)
T PRK10776         33 WEFPGGKIEAGETPEQALIRELQEEVGITVQHATL-FEKLEYEFPD--RHITLWFWLVESWEGE--PWGKEGQPGRWVSQ  107 (129)
T ss_pred             EECCceecCCCCCHHHHHHHHHHHHHCCceecceE-EEEEEeeCCC--cEEEEEEEEEEEECCc--cCCccCCccEEecH
Confidence            89999999999999999999999999998766555 6665554432  2233445555433222  12235667899999


Q ss_pred             HHHHHhcCchhHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRL   99 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~   99 (121)
                      +++..+...+.++.++..+
T Consensus       108 ~~l~~~~~p~~~~~~~~~~  126 (129)
T PRK10776        108 VALNADEFPPANEPIIAKL  126 (129)
T ss_pred             HHCccCCCCcccHHHHHHH
Confidence            9998876666666666554

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.66  E-value=1.5e-15  Score=98.28  Aligned_cols=98  Identities=23%  Similarity=0.267  Sum_probs=71.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeE-EEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRK-WMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~-W~~   79 (121)
                      |.+|||++++||++++||.||++||||+.+..... ++.+.....  ......++|.+......   +.++..+.. +++
T Consensus        47 ~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~-lg~~~~~~~--~~~~~~~vf~A~~~~~~---~~~e~~E~~~~~~  120 (156)
T TIGR02705        47 LEFPGGKVEPGETSKEAAIREVMEETGAIVKELHY-IGQYEVEGE--STDFVKDVYFAEVSALE---SKDDYLETKGPVL  120 (156)
T ss_pred             EECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEE-EEEEEecCC--CcEEEEEEEEEEEeccc---cCCCceeeEeEEE
Confidence            78999999999999999999999999999988887 887654322  24456678888776432   235666666 799


Q ss_pred             HHHHHHhcCchh-----HH-HHHHHHHHHhc
Q 033333           80 VAEARKVCQHWW-----MK-EALDRLVMRLT  104 (121)
Q Consensus        80 ~~~l~~~~~~~~-----~~-~~~~~~~~~~~  104 (121)
                      ++++.+++....     ++ ..+..+++++.
T Consensus       121 ~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~~  151 (156)
T TIGR02705       121 LQEIPDIIKADPRFSFIMKDDVLLKCLERAK  151 (156)
T ss_pred             HHHHHHHHhcCCcccEEEchHHHHHHHHHHH
Confidence            999988754332     12 34555555553

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.66  E-value=1.1e-15  Score=94.66  Aligned_cols=93  Identities=17%  Similarity=0.088  Sum_probs=67.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||+++.+|+++++|.||++||||+.+..... ++.+.+..+  +.....++|.+.......  ...+..+.+|+++
T Consensus        30 w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~  104 (124)
T cd03425          30 WEFPGGKVEPGETPEQALVRELREELGIEVEVGEL-LATVEHDYP--DKRVTLHVFLVELWSGEP--QLLEHQELRWVPP  104 (124)
T ss_pred             EeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccce-EEEEEeeCC--CCeEEEEEEEEeeeCCCc--ccccCceEEEeeH
Confidence            89999999999999999999999999999877665 776655443  233445666665443221  1345667899999


Q ss_pred             HHHHHhcCchhHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDR   98 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~   98 (121)
                      +++..+...+.++.+++.
T Consensus       105 ~el~~~~~~~~~~~~l~~  122 (124)
T cd03425         105 EELDDLDFPPADVPIVAA  122 (124)
T ss_pred             HHcccCCCCcccHHHHHh
Confidence            999887666655555543

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=3.9e-16  Score=97.02  Aligned_cols=80  Identities=20%  Similarity=0.208  Sum_probs=63.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.+|||++++||++++||.||++||||+.+..... ++.+.....  .......+|.+.........+..|.....|++.
T Consensus        23 w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~-l~~~~~~~~--~~~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~   99 (118)
T cd04665          23 WEFPGGHVEPGETIEEAARREVWEETGAELGSLTL-VGYYQVDLF--ESGFETLVYPAVSAQLEEKASYLETDGPVLFKN   99 (118)
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHHCCccCceEE-EEEEEecCC--CCcEEEEEEEEEEEecccccccccccCcEEecc
Confidence            89999999999999999999999999999977776 887765432  233455777777766555456678888999986


Q ss_pred             HHH
Q 033333           81 AEA   83 (121)
Q Consensus        81 ~~l   83 (121)
                      +..
T Consensus       100 ~~~  102 (118)
T cd04665         100 EPE  102 (118)
T ss_pred             CCc
Confidence            655

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.65  E-value=7.9e-16  Score=102.42  Aligned_cols=89  Identities=17%  Similarity=0.177  Sum_probs=59.7

Q ss_pred             CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC-CCC--eeEEEEEEeEecccccccccCCcceeE
Q 033333            1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA-HNT--DYQGYMFPLLVQDQLAEWPEKNVRSRK   76 (121)
Q Consensus         1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~-~~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~   76 (121)
                      |.+| ||++++||++++||+||++||||+++......++.+.+.... .+.  ....++|.+..... .....+|..+++
T Consensus        64 w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~-~~~~~~Ev~~~~  142 (184)
T PRK03759         64 WTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGIVENEVCPVFAARVTSA-LQPNPDEVMDYQ  142 (184)
T ss_pred             ccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCceeeEEEEEEEEEECCC-CCCChhHeeeEE
Confidence            4443 799999999999999999999999986433225555443221 111  23456777765532 222235778899


Q ss_pred             EEeHHHHHHhcCch
Q 033333           77 WMSVAEARKVCQHW   90 (121)
Q Consensus        77 W~~~~~l~~~~~~~   90 (121)
                      |++++++.+++...
T Consensus       143 W~~~~el~~~i~~~  156 (184)
T PRK03759        143 WVDPADLLRAVDAT  156 (184)
T ss_pred             EECHHHHHHHHHhC
Confidence            99999999986533

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=6.2e-16  Score=95.14  Aligned_cols=87  Identities=24%  Similarity=0.365  Sum_probs=64.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccc-cccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~   79 (121)
                      |.+|||+++.||++.++|.||+.||+|+.+..... ++.+.+.....+.....++|.+........ ....+..+.+|++
T Consensus        27 ~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~  105 (123)
T cd02883          27 WELPGGGVEPGETLEEAAIREVREETGLDVDVLRL-LGVYEVESPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVT  105 (123)
T ss_pred             EeCCcccccCCCCHHHHHHHHHHHhhCccceeeeE-EEEEEeeccCCCceEEEEEEEEEeCCCCcCCCCCCccceEEEEc
Confidence            88999999999999999999999999999875554 666665544334455667787776654332 2235666789999


Q ss_pred             HHHHHHhcC
Q 033333           80 VAEARKVCQ   88 (121)
Q Consensus        80 ~~~l~~~~~   88 (121)
                      ++++.++..
T Consensus       106 ~~~l~~~~~  114 (123)
T cd02883         106 LDELPALAL  114 (123)
T ss_pred             HHHCccccc
Confidence            999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=8.1e-16  Score=101.96  Aligned_cols=92  Identities=18%  Similarity=0.237  Sum_probs=64.4

Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHhCceeeee---cceeeeeEeeeC-CCC--CeeEEEEEEeEecccccccc-cCCcce
Q 033333            2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVE---CELLGEWNFKSR-AHN--TDYQGYMFPLLVQDQLAEWP-EKNVRS   74 (121)
Q Consensus         2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~---~~~l~~~~~~~~-~~~--~~~~~~~f~~~~~~~~~~~~-~~e~~~   74 (121)
                      .+|||++++||++.+||+||++||||+.+...   .. ++.+.|... ...  .....++|.+.........+ .+|..+
T Consensus        68 ~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~-~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~  146 (180)
T cd03676          68 NLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKP-VGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVES  146 (180)
T ss_pred             eecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhcee-ccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeE
Confidence            48999999999999999999999999997653   23 555444432 222  23455677766543322223 367788


Q ss_pred             eEEEeHHHHHHhcCchhHHH
Q 033333           75 RKWMSVAEARKVCQHWWMKE   94 (121)
Q Consensus        75 ~~W~~~~~l~~~~~~~~~~~   94 (121)
                      +.|++++++.+++....+.+
T Consensus       147 ~~~~~~~el~~~l~~g~~~~  166 (180)
T cd03676         147 FRLLTIDEVLRALKEGEFKP  166 (180)
T ss_pred             EEEECHHHHHHHHHcCCCCc
Confidence            99999999999877665544

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>TIGR00586 mutt mutator mutT protein

Probab=99.63  E-value=1.8e-15  Score=94.60  Aligned_cols=93  Identities=14%  Similarity=-0.046  Sum_probs=65.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||+++.||++++++.||++||||+.+..... ++.+.+...  +.....++|.+...+...  ...+..+.+|+++
T Consensus        33 w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~-~~~~~h~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~W~~~  107 (128)
T TIGR00586        33 LEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEF-EKLEYEFYP--RHITLWFWLLERWEGGPP--GKEGQPEEWWVLV  107 (128)
T ss_pred             EECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEEEECC--CcEEEEEEEEEEEcCCCc--CcccccccEEeCH
Confidence            89999999999999999999999999999877665 666555433  223344556555443221  1234456899999


Q ss_pred             HHHHHhcCchhHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDR   98 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~   98 (121)
                      +++.++.....++.+++.
T Consensus       108 ~~l~~~~~p~~~~~~~~~  125 (128)
T TIGR00586       108 GLLADDFFPAANPVIIKL  125 (128)
T ss_pred             HHCCccCCCCCCHHHHHH
Confidence            999987665555555543

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1.4e-15  Score=97.53  Aligned_cols=88  Identities=24%  Similarity=0.260  Sum_probs=57.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeee----cceeeeeEeeeCC----C--CCeeEEEEEEeEeccc-----cc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVE----CELLGEWNFKSRA----H--NTDYQGYMFPLLVQDQ-----LA   65 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~----~~~l~~~~~~~~~----~--~~~~~~~~f~~~~~~~-----~~   65 (121)
                      |.+|||++++||++.+||+||++||||+.+...    .. ++.+.+..+.    +  .......+|.+.....     ..
T Consensus        31 w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  109 (143)
T cd04694          31 WVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQV-LGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQAR  109 (143)
T ss_pred             EECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeE-EeeeccccccccCCCcccceeEEEEEEEEecccccccccc
Confidence            899999999999999999999999999997653    33 5554332221    1  1122222333322211     11


Q ss_pred             ccc-cCCcceeEEEeHHHHHHhcCc
Q 033333           66 EWP-EKNVRSRKWMSVAEARKVCQH   89 (121)
Q Consensus        66 ~~~-~~e~~~~~W~~~~~l~~~~~~   89 (121)
                      ..+ .+|..+++|++++++.++...
T Consensus       110 ~~~~~~Ev~~~~Wv~~~~a~~~~~~  134 (143)
T cd04694         110 LQPDPNEVSAAAWLDKSLAKAVVSA  134 (143)
T ss_pred             ccCChhhccceEeeCHHHHHHHHHh
Confidence            122 267888999999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1.6e-15  Score=96.11  Aligned_cols=85  Identities=24%  Similarity=0.228  Sum_probs=57.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCcee-eeecceeeeeE--eeeCCCCCeeEEEEEEeEeccccccc-----cc-CC
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGEWN--FKSRAHNTDYQGYMFPLLVQDQLAEW-----PE-KN   71 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~-----~~-~e   71 (121)
                      |.+|||+++.||++.+||.||++||||+.+ ..... +....  +...........++|.+.........     .+ .+
T Consensus        30 w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~  108 (133)
T cd04685          30 WFTPGGGVEPGESPEQAARRELREETGITVADLGPP-VWRRDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRS  108 (133)
T ss_pred             EECCcCCCCCCCCHHHHHHHHHHHHHCCccccccce-EEEEEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhh
Confidence            889999999999999999999999999998 54443 43322  22222223345577887765422111     11 23


Q ss_pred             cceeEEEeHHHHHHh
Q 033333           72 VRSRKWMSVAEARKV   86 (121)
Q Consensus        72 ~~~~~W~~~~~l~~~   86 (121)
                      ...++|++++++...
T Consensus       109 ~~~~~W~~~~el~~~  123 (133)
T cd04685         109 ILGWRWWTRAELAAT  123 (133)
T ss_pred             cccccCCCHHHHhhC
Confidence            446899999999875

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=1.2e-15  Score=95.54  Aligned_cols=88  Identities=22%  Similarity=0.222  Sum_probs=51.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccc----cccc-ccCCc--c
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ----LAEW-PEKNV--R   73 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~-~~~e~--~   73 (121)
                      |.||||++++||++.+||+||++||||+.+......++.+..  .........+++.+.....    .... ..++.  .
T Consensus        26 ~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~E~~~i  103 (126)
T cd04663          26 FQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWER--RFYQKRHFWHLTLCEVDQDLPDSWVHFVQDDGGHEF  103 (126)
T ss_pred             EECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeC--CEeeccEEEEEEEEEecCCCcccccCcccCCCCceE
Confidence            789999999999999999999999999997432221333221  1111112233344433211    1111 11233  3


Q ss_pred             eeEEEeHHHHHHhcCch
Q 033333           74 SRKWMSVAEARKVCQHW   90 (121)
Q Consensus        74 ~~~W~~~~~l~~~~~~~   90 (121)
                      .+.|++++++.....++
T Consensus       104 ~~~Wv~l~~~~~~~~~~  120 (126)
T cd04663         104 RFFWVDLASCLDEFLHL  120 (126)
T ss_pred             EEEEEccccccccceec
Confidence            45699999997655443

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.61  E-value=3.5e-15  Score=99.73  Aligned_cols=85  Identities=21%  Similarity=0.170  Sum_probs=60.4

Q ss_pred             CccCCcccCCC-CCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccccc-CCcceeEEE
Q 033333            1 MLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPE-KNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~g-E~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~   78 (121)
                      |.||||++|++ |++++||+||+.||||+.+..... ++.+.......+.  .+..|.+.........++ +|..++.|+
T Consensus        62 ~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~-lg~l~~~~~~~~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~v  138 (190)
T PRK10707         62 VAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEV-IGVLPPVDSSTGY--QVTPVVGIIPPDLPYRANEDEVAAVFEM  138 (190)
T ss_pred             EEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEE-EEEeeeeeccCCc--EEEEEEEEECCCCCCCCChhhhheEEEE
Confidence            78999999985 689999999999999999888777 8876533232222  334444433333333333 678889999


Q ss_pred             eHHHHHHhcC
Q 033333           79 SVAEARKVCQ   88 (121)
Q Consensus        79 ~~~~l~~~~~   88 (121)
                      +++++.++..
T Consensus       139 pl~e~~~~~~  148 (190)
T PRK10707        139 PLAEALHLGR  148 (190)
T ss_pred             eHHHHhCccc
Confidence            9999988643

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=3.1e-15  Score=93.54  Aligned_cols=31  Identities=35%  Similarity=0.291  Sum_probs=29.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceee
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI   31 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~   31 (121)
                      |.+|||+++.||++.+||+||++||||+.+.
T Consensus        35 W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662          35 WSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             EECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            8999999999999999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.61  E-value=6.6e-15  Score=97.76  Aligned_cols=99  Identities=14%  Similarity=0.058  Sum_probs=60.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeec----------------ceeeeeEeeeCCCC----CeeEEEEEEeEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC----------------ELLGEWNFKSRAHN----TDYQGYMFPLLV   60 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~----------------~~l~~~~~~~~~~~----~~~~~~~f~~~~   60 (121)
                      |.||||++++||++.+||+||++||||+.+....                . +.+|..+.....    ...+++.|.+..
T Consensus        62 walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~-~~vy~~~~~dpr~td~~w~~Tva~~f~~  140 (186)
T cd03670          62 WAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDG-VEVYKGYVDDPRNTDNAWMETVAVNFHD  140 (186)
T ss_pred             CcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccc-cEEEeccccCCCCCCcceEEEEEEEEEe
Confidence            8999999999999999999999999976532211                1 223322222211    122334444433


Q ss_pred             ccc-----ccccccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHH
Q 033333           61 QDQ-----LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        61 ~~~-----~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      ...     ......++..+++|+++++++.|+.+.  ..++..+.+.
T Consensus       141 ~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~dH--~~Il~~a~~~  185 (186)
T cd03670         141 EDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANH--SQFLKKVAEL  185 (186)
T ss_pred             cCcccccccccCCCCchheeEEEEcccccccccCH--HHHHHHHHHh
Confidence            211     112233677889999999998765544  4666665543

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.59  E-value=7.3e-15  Score=98.25  Aligned_cols=91  Identities=16%  Similarity=0.017  Sum_probs=65.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc-cc---cccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL-AE---WPEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~---~~~~e~~~~~   76 (121)
                      |++|+|.+|+| ++++||+||++||||+.+..... ++.+ +.++ +......++|++...... ..   ..++|..++.
T Consensus        81 lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~-l~~~-~~sp-G~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~  156 (191)
T PRK15009         81 IETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRK-LFEL-YMSP-GGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVL  156 (191)
T ss_pred             EEEeccccCCC-CHHHHHHHHHHHhhCCccceEEE-eeEE-EcCC-cccCcEEEEEEEEECchhcccCCCCCCCceEEEE
Confidence            68999999976 69999999999999999887776 6654 3333 333445678888754221 11   1235677899


Q ss_pred             EEeHHHHHHhcCchhHHHH
Q 033333           77 WMSVAEARKVCQHWWMKEA   95 (121)
Q Consensus        77 W~~~~~l~~~~~~~~~~~~   95 (121)
                      |++++++.+++.++.+.+.
T Consensus       157 ~~~~~e~~~~i~~G~i~da  175 (191)
T PRK15009        157 ELPFSQALEMIKTGEIRDG  175 (191)
T ss_pred             EEcHHHHHHHHHcCCCCcH
Confidence            9999999999876655543

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.58  E-value=1.2e-14  Score=94.52  Aligned_cols=86  Identities=17%  Similarity=0.119  Sum_probs=59.0

Q ss_pred             CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeec--ceeeeeEeeeCCC-CCeeEEEEEEeEecccccccccCCcceeE
Q 033333            1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVEC--ELLGEWNFKSRAH-NTDYQGYMFPLLVQDQLAEWPEKNVRSRK   76 (121)
Q Consensus         1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~--~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~   76 (121)
                      |.+| ||+++.||  .+||+||++||||+.+....  . ++.+.|..... +.....++|.+..... .....+|..+++
T Consensus        57 W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~f~~~~~~~-~~~~~~Ev~~~~  132 (158)
T TIGR02150        57 WTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTV-LPRFSYRARDAWGEHELCPVFFARAPVP-LNPNPEEVAEYR  132 (158)
T ss_pred             ccccccCCCCccc--HHHHHHHHHHHHCCCccccceEE-cceEEEEEecCCCcEEEEEEEEEecCCc-ccCChhHeeeEE
Confidence            6665 79999999  49999999999999976543  2 44444433221 2344556777665442 222235888899


Q ss_pred             EEeHHHHHHhcCch
Q 033333           77 WMSVAEARKVCQHW   90 (121)
Q Consensus        77 W~~~~~l~~~~~~~   90 (121)
                      |++++++.+++..+
T Consensus       133 W~~~~el~~~~~~~  146 (158)
T TIGR02150       133 WVSLEELKEILKAP  146 (158)
T ss_pred             EeCHHHHHHHHhcC
Confidence            99999999987644

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK08999 hypothetical protein; Provisional

Probab=99.49  E-value=1.5e-13  Score=97.96  Aligned_cols=94  Identities=16%  Similarity=0.059  Sum_probs=66.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.++|.||++||||+.+..... ++.+.+..+  +.....++|.+......  ....+..+++|+++
T Consensus        34 w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-l~~~~h~~~--~~~~~i~~y~~~~~~~~--~~~~e~~~~~Wv~~  108 (312)
T PRK08999         34 WEFPGGKVEPGETVEQALARELQEELGIEVTAARP-LITVRHDYP--DKRVRLDVRRVTAWQGE--PHGREGQPLAWVAP  108 (312)
T ss_pred             EECCccCCCCCCCHHHHHHHHHHHHhCCceeccee-EEEEEEEcC--CCeEEEEEEEEEEecCc--ccCccCCccEEecH
Confidence            89999999999999999999999999999876555 665554433  22334566665543222  12245667899999


Q ss_pred             HHHHHhcCchhHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRL   99 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~   99 (121)
                      +++.++...+.++.+++.+
T Consensus       109 ~el~~~~~~~~~~~i~~~l  127 (312)
T PRK08999        109 DELAVYPFPPANQPIVRAL  127 (312)
T ss_pred             HHcccCCCCcchHHHHHHh
Confidence            9999876666666655544

>PLN02709 nudix hydrolase

Probab=99.47  E-value=1.9e-13  Score=92.77  Aligned_cols=83  Identities=16%  Similarity=0.091  Sum_probs=60.5

Q ss_pred             CccCCcccCCC-CCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecc--ccccccc-CCcceeE
Q 033333            1 MLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPE-KNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~g-E~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~-~e~~~~~   76 (121)
                      |.||||++|++ +++.+||+||+.||+|+....... +|.........+  ..++.|++.+..  .....++ +|..++.
T Consensus        69 iafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~v-lg~L~~~~t~sg--~~V~P~V~~~~~~~~~~~~~np~EV~~vf  145 (222)
T PLN02709         69 VALPGGKRDEEDKDDIATALREAREEIGLDPSLVTI-ISVLEPFVNKKG--MSVAPVIGFLHDKKAFKPLPNPAEVEEIF  145 (222)
T ss_pred             ccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEE-eeecCCeECCCC--CEEEEEEEEecCCCCccccCChhhhheeE
Confidence            89999999996 479999999999999999876676 777654333222  345667765543  2222234 6888899


Q ss_pred             EEeHHHHHHh
Q 033333           77 WMSVAEARKV   86 (121)
Q Consensus        77 W~~~~~l~~~   86 (121)
                      |++++.+.+.
T Consensus       146 ~vPL~~ll~~  155 (222)
T PLN02709        146 DVPLEMFLKD  155 (222)
T ss_pred             EecHHHHhCC
Confidence            9999998753

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=1.9e-13  Score=84.92  Aligned_cols=78  Identities=19%  Similarity=0.190  Sum_probs=48.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc--ccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA--EWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~e~~~~~W~   78 (121)
                      |.||||++++||++++||.||++||||+.+....  +..+...... .....++.|.........  ..+..|..++.|+
T Consensus        31 w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~--l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~  107 (118)
T cd04674          31 LALPGGFIELGETWQDAVARELLEETGVAVDPAD--IRLFDVRSAP-DGTLLVFGLLPERRAADLPPFEPTDETTERAVV  107 (118)
T ss_pred             EECCceecCCCCCHHHHHHHHHHHHHCCcccccE--EEEEEEEecC-CCeEEEEEEEeccccccCCCCCCCcceeeEEEc
Confidence            8999999999999999999999999999976422  3333222222 222334444444333222  2234566666666


Q ss_pred             eHH
Q 033333           79 SVA   81 (121)
Q Consensus        79 ~~~   81 (121)
                      ...
T Consensus       108 ~~~  110 (118)
T cd04674         108 TAP  110 (118)
T ss_pred             cCC
Confidence            543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN03143 nudix hydrolase; Provisional

Probab=99.46  E-value=1.2e-12  Score=92.25  Aligned_cols=93  Identities=16%  Similarity=0.107  Sum_probs=58.0

Q ss_pred             CccCCcccCC-CCCHHHHHHHHHHHHhCceeee--ecceeee--------eEeeeCCCCCeeEEEEEEeEecccc-----
Q 033333            1 MLFPKGGWEI-DESIQEAALRETIEEAGVTGIV--ECELLGE--------WNFKSRAHNTDYQGYMFPLLVQDQL-----   64 (121)
Q Consensus         1 W~lPgG~ve~-gE~~~eaa~REl~EEtG~~~~~--~~~~l~~--------~~~~~~~~~~~~~~~~f~~~~~~~~-----   64 (121)
                      |+||+|.+|+ +|++.+||+||++||||+.+..  ... +..        -.|.+. +.....+++|++......     
T Consensus       160 lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~-L~~~~~~~~g~~v~psp-G~~dE~i~Lfla~~~v~~~~l~~  237 (291)
T PLN03143        160 LELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVD-LTAFLDPSTGCRMFPSP-GGCDEEISLFLYRGHVDKETIRQ  237 (291)
T ss_pred             EEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEE-eeeccccCcCceEEecC-CccCCeEEEEEEccccchhhhcc
Confidence            6899999998 5899999999999999998542  222 221        112222 222234456664433210     


Q ss_pred             -----ccccc-CCcceeEEEeHHHHHHhcCchhHHHH
Q 033333           65 -----AEWPE-KNVRSRKWMSVAEARKVCQHWWMKEA   95 (121)
Q Consensus        65 -----~~~~~-~e~~~~~W~~~~~l~~~~~~~~~~~~   95 (121)
                           ....+ .|..++.|++++++..+..+.....+
T Consensus       238 l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ktl~a  274 (291)
T PLN03143        238 LQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMA  274 (291)
T ss_pred             cccccCCCCCCCcEEEEEEEEHHHHHHHHHhHHHHHH
Confidence                 11122 46677899999999988765543333

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.42  E-value=1.4e-12  Score=82.20  Aligned_cols=88  Identities=25%  Similarity=0.251  Sum_probs=54.2

Q ss_pred             CccCCcccCCCCCHHH-HHHHHHHHHhCceee--eecceeeeeEeeeCCCC---CeeEEEEEEeEecccc--cccc----
Q 033333            1 MLFPKGGWEIDESIQE-AALRETIEEAGVTGI--VECELLGEWNFKSRAHN---TDYQGYMFPLLVQDQL--AEWP----   68 (121)
Q Consensus         1 W~lPgG~ve~gE~~~e-aa~REl~EEtG~~~~--~~~~~l~~~~~~~~~~~---~~~~~~~f~~~~~~~~--~~~~----   68 (121)
                      |.||||++++||++.+ ||+||+.||||+.+.  .... ++.+........   ......++........  ....    
T Consensus        38 ~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (161)
T COG0494          38 WELPGGKVEPGEELPEEAAARELEEETGLRVKDERLEL-LGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAP  116 (161)
T ss_pred             eecCCcccCCCCchHHHHHHHHHHHHhCCeeeeeccee-eeeccCcccCcccccceEEEEEEeeeccccccccccccCCC
Confidence            8999999999998888 999999999999987  4444 554432222111   1111222222211111  1111    


Q ss_pred             cCCcceeEEEeHHHHHHhcCc
Q 033333           69 EKNVRSRKWMSVAEARKVCQH   89 (121)
Q Consensus        69 ~~e~~~~~W~~~~~l~~~~~~   89 (121)
                      ..+.....|++++++......
T Consensus       117 ~~e~~~~~~~~~~~~~~~~~~  137 (161)
T COG0494         117 SEELEDLEWVPLDELAALVLA  137 (161)
T ss_pred             cchhhceeeeeHHHccccccc
Confidence            135677899999999876543

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.37  E-value=4.3e-13  Score=93.15  Aligned_cols=81  Identities=19%  Similarity=0.133  Sum_probs=59.3

Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeHHH
Q 033333            3 FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAE   82 (121)
Q Consensus         3 lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~~   82 (121)
                      +-.|.||+|||+++|..||++||+|++++.+.. ++....+.+    ..+..-|.+....+.......|..+++||+.++
T Consensus       172 ~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY-~~SQPWPfP----~SLMigf~aey~sgeI~~d~~Eleda~WFs~~e  246 (279)
T COG2816         172 LLAGFVEPGETLEQAVAREVFEEVGIKVKNVRY-VGSQPWPFP----HSLMLGFMAEYDSGEITPDEGELEDARWFSRDE  246 (279)
T ss_pred             eeeecccCCccHHHHHHHHHHHhhCeEEeeeeE-EeccCCCCc----hhhhhhheeeeccccccCCcchhhhccccCHhH
Confidence            457999999999999999999999999998776 555333222    224455666666655433347888999999999


Q ss_pred             HHHhcC
Q 033333           83 ARKVCQ   88 (121)
Q Consensus        83 l~~~~~   88 (121)
                      +..++.
T Consensus       247 vl~~L~  252 (279)
T COG2816         247 VLPALP  252 (279)
T ss_pred             HhhhcC
Confidence            655543

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.22  E-value=2.4e-10  Score=79.07  Aligned_cols=87  Identities=17%  Similarity=0.300  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHhCceeee-----ecceeeeeEeeeCCC------C---CeeEEEEEEeEecccccccc-cCCcceeEEE
Q 033333           14 IQEAALRETIEEAGVTGIV-----ECELLGEWNFKSRAH------N---TDYQGYMFPLLVQDQLAEWP-EKNVRSRKWM   78 (121)
Q Consensus        14 ~~eaa~REl~EEtG~~~~~-----~~~~l~~~~~~~~~~------~---~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~   78 (121)
                      ..+||+||++||+||.+..     +.. ++.+.|.....      +   .....++|...........+ .+|..+++|+
T Consensus       117 ~~eAA~REL~EElGI~~~~~~~~~l~~-~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wv  195 (247)
T PLN02552        117 VKNAAQRKLLHELGIPAEDVPVDQFTF-LTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYV  195 (247)
T ss_pred             HHHHHHhHHHHHhCCCcccccccccee-eeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEE
Confidence            6789999999999999543     333 55555544322      1   12333333332222222233 3688889999


Q ss_pred             eHHHHHHhcC-------chhHHHHHHHHHH
Q 033333           79 SVAEARKVCQ-------HWWMKEALDRLVM  101 (121)
Q Consensus        79 ~~~~l~~~~~-------~~~~~~~~~~~~~  101 (121)
                      +++++.+++.       .|+++.++..+..
T Consensus       196 s~~el~~~~~~~~~~~~tpw~~~~~~~~l~  225 (247)
T PLN02552        196 NREELKEMMRKESGLKLSPWFRLIVDNFLM  225 (247)
T ss_pred             eHHHHHHHHhhcCCcccCHHHHHHHHHHHH
Confidence            9999998853       5666666655543

>PLN02791 Nudix hydrolase homolog

Probab=99.15  E-value=4.7e-10  Score=87.77  Aligned_cols=87  Identities=18%  Similarity=0.060  Sum_probs=58.0

Q ss_pred             Ccc-CCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeC--CC--CCeeEEEEEEeEecccc---cccc-c
Q 033333            1 MLF-PKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSR--AH--NTDYQGYMFPLLVQDQL---AEWP-E   69 (121)
Q Consensus         1 W~l-PgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~--~~--~~~~~~~~f~~~~~~~~---~~~~-~   69 (121)
                      |.+ ||||++.||++.+||+||++||+||.+..  ... ++.+.+...  ..  ..+.+.++|.+......   ...+ .
T Consensus        63 WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~-l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~  141 (770)
T PLN02791         63 WDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFEL-LFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQE  141 (770)
T ss_pred             ccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheee-eeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCCh
Confidence            666 79999999999999999999999998543  233 555433211  11  12344566665432211   1122 3


Q ss_pred             CCcceeEEEeHHHHHHhcC
Q 033333           70 KNVRSRKWMSVAEARKVCQ   88 (121)
Q Consensus        70 ~e~~~~~W~~~~~l~~~~~   88 (121)
                      +|..+++|++++++.+++.
T Consensus       142 eEV~~v~wvsl~El~~~l~  160 (770)
T PLN02791        142 SEVSAVKYMSIEEYKSALA  160 (770)
T ss_pred             hhhheeEEEcHHHHHHHHh
Confidence            6888899999999997754

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.15  E-value=4.1e-12  Score=89.08  Aligned_cols=83  Identities=20%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEec-ccccccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ-DQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~e~~~~~W~~   79 (121)
                      |..++|.+|+||+++|||+||+.||||++++.... ...-..+  ..+...++.++.+... .......+.|..+++||+
T Consensus       215 ~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~-~asQPWP--~~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~  291 (345)
T KOG3084|consen  215 WTCLAGFLEPGESIEEAVRRETWEETGIEVEVISY-VASQPWP--LMPQSLMIGCLALAKLNGKISVDKDLELEDAQWFD  291 (345)
T ss_pred             hhhhhccCCccccHHHHHHHHHHHHhCceeeeEee-eecCCCC--CCchHHHHHHHHHHhhCCccccCcchhhhhccccc
Confidence            78899999999999999999999999999987654 3322221  1111111122222111 222222234777899999


Q ss_pred             HHHHHHh
Q 033333           80 VAEARKV   86 (121)
Q Consensus        80 ~~~l~~~   86 (121)
                      .+++...
T Consensus       292 r~ev~~a  298 (345)
T KOG3084|consen  292 REEVKSA  298 (345)
T ss_pred             HHHHHHH
Confidence            9998764

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.07  E-value=1e-09  Score=72.55  Aligned_cols=84  Identities=18%  Similarity=0.102  Sum_probs=54.0

Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEE--eEecccccc---cccCCcceeE
Q 033333            2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFP--LLVQDQLAE---WPEKNVRSRK   76 (121)
Q Consensus         2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~--~~~~~~~~~---~~~~e~~~~~   76 (121)
                      +||.|-+|.||+++.||+|||+||||+..++......+|-.+ ...+......++.  +.......+   ..+.|..++.
T Consensus       106 ElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DP-Gltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~  184 (225)
T KOG3041|consen  106 ELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDP-GLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVF  184 (225)
T ss_pred             EcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCC-CCCCCceEEEEEEecCCCccccCccccCCCCceEEEE
Confidence            689999999999999999999999999976655434444332 2222222223333  333322211   1125777889


Q ss_pred             EEeHHHHHHh
Q 033333           77 WMSVAEARKV   86 (121)
Q Consensus        77 W~~~~~l~~~   86 (121)
                      -++..++.+.
T Consensus       185 ~i~~~~L~~~  194 (225)
T KOG3041|consen  185 LIPLSELWRE  194 (225)
T ss_pred             EeeHHHHHHH
Confidence            9998888765

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.99  E-value=3.3e-09  Score=65.65  Aligned_cols=96  Identities=25%  Similarity=0.246  Sum_probs=61.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceee-eecceeeeeEeeeCCCCCeeEEEEEEeEeccc----------------
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI-VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ----------------   63 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~-~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~----------------   63 (121)
                      |++|+|....||++.-||+||+-||+||.++ .... +|.+.   ..++.  .++.|..+..-+                
T Consensus        38 WSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~-lG~~k---Q~GGK--vVta~~veae~Dva~~rSntFe~eWPpr  111 (161)
T COG4119          38 WSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRID-LGSLK---QSGGK--VVTAFGVEAELDVADARSNTFELEWPPR  111 (161)
T ss_pred             ccccccccCCCcCHHHHHHHHhhhhhceeecCchhh-hhhhc---cCCCc--EEEEEeeeeeeehhhhhcceeeeecCCC
Confidence            9999999999999999999999999999975 2333 55432   22222  334443332111                


Q ss_pred             cccccc-CCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHh
Q 033333           64 LAEWPE-KNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  103 (121)
Q Consensus        64 ~~~~~~-~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~  103 (121)
                      ...... .|...+.||++.++...+. ...++++..+....
T Consensus       112 SG~M~~FPEVDRagWF~l~eAr~Kil-~gQRpfldrL~a~~  151 (161)
T COG4119         112 SGKMRKFPEVDRAGWFPLAEARTKIL-KGQRPFLDRLMAHA  151 (161)
T ss_pred             CCccccCcccccccceecHHHHhHHh-hccchHHHHHHHHh
Confidence            111111 2455679999999987654 33456776666553

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.91  E-value=3.3e-09  Score=71.89  Aligned_cols=84  Identities=24%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             ccCCcccCCC-CCHHHHHHHHHHHHhCceeeeecceeeeeE-eeeCCCCCeeEEEEEEeEeccccccccc-CCcceeEEE
Q 033333            2 LFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLGEWN-FKSRAHNTDYQGYMFPLLVQDQLAEWPE-KNVRSRKWM   78 (121)
Q Consensus         2 ~lPgG~ve~g-E~~~eaa~REl~EEtG~~~~~~~~~l~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~   78 (121)
                      .||||+.|+. ++-..||.||..||.|++...... +|... +..+.+-...-...|............+ .|...+.|+
T Consensus        77 ~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~-~g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~V  155 (246)
T KOG3069|consen   77 CFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDV-LGALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWV  155 (246)
T ss_pred             eCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhh-hhhccceeeccCcccceeEEEEecccccccccCCchheeeeeee
Confidence            5899999994 477889999999999999876665 66543 2222221212222333222111222233 677789999


Q ss_pred             eHHHHHHh
Q 033333           79 SVAEARKV   86 (121)
Q Consensus        79 ~~~~l~~~   86 (121)
                      |++++..-
T Consensus       156 PL~~ll~~  163 (246)
T KOG3069|consen  156 PLTDLLLP  163 (246)
T ss_pred             eHHHHhhh
Confidence            99999763

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.74  E-value=2.1e-09  Score=75.35  Aligned_cols=85  Identities=20%  Similarity=0.202  Sum_probs=55.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCC-CCeeEEEEEEeEeccc--ccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH-NTDYQGYMFPLLVQDQ--LAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W   77 (121)
                      |-+|+|.|+++|++.++|+||++||||++.....+ +..-. .+... ....-..||.+.+...  .......+...++|
T Consensus       145 wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eV-la~r~-~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~W  222 (295)
T KOG0648|consen  145 WKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEV-LAFRR-AHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAW  222 (295)
T ss_pred             ccccceEecccccchhhhhhhhHHHhCcchhhhhH-HHHHh-hhcchhhcccccceeEEEeeccccccchhHHHHHHHhc
Confidence            88999999999999999999999999998776654 33211 11111 1112234555554332  22223345566799


Q ss_pred             EeHHHHHHhc
Q 033333           78 MSVAEARKVC   87 (121)
Q Consensus        78 ~~~~~l~~~~   87 (121)
                      +++++.....
T Consensus       223 mp~~e~v~qp  232 (295)
T KOG0648|consen  223 MPIEEYVSQP  232 (295)
T ss_pred             ccHHHhhccc
Confidence            9999887653

>PLN02839 nudix hydrolase

Probab=98.67  E-value=1.4e-07  Score=68.23  Aligned_cols=85  Identities=20%  Similarity=0.238  Sum_probs=61.3

Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHhCceee---eecceeeeeEeeeCCCCC--eeEEEEEEeEeccccccccc-CCcceeE
Q 033333            3 FPKGGWEIDESIQEAALRETIEEAGVTGI---VECELLGEWNFKSRAHNT--DYQGYMFPLLVQDQLAEWPE-KNVRSRK   76 (121)
Q Consensus         3 lPgG~ve~gE~~~eaa~REl~EEtG~~~~---~~~~~l~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~-~e~~~~~   76 (121)
                      +.+|.+..||++.++++||..||+|+...   .... .|.+.|.......  ....++|-+.++.+..+.+. .|..+..
T Consensus       239 ~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~-~G~VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~F~  317 (372)
T PLN02839        239 LVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA-VGAVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVESFK  317 (372)
T ss_pred             ccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE-eEEEEEEEEcCCccccCEEEEeeeecCCccccCCCccceeEEE
Confidence            35899999999999999999999999843   2333 6777765433222  23445677777776654444 5677789


Q ss_pred             EEeHHHHHHhcC
Q 033333           77 WMSVAEARKVCQ   88 (121)
Q Consensus        77 W~~~~~l~~~~~   88 (121)
                      +++++++.+.+.
T Consensus       318 Lm~v~EV~~~l~  329 (372)
T PLN02839        318 LIPVAQVANVIR  329 (372)
T ss_pred             EecHHHHHHHHH
Confidence            999999987654

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.65  E-value=4.7e-07  Score=55.36  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||+|.++.+++.+++..|++.++.++   .... ++.+.+..+  +......+|.+......     .+..+.+|+++
T Consensus        31 wefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~H~ft--h~~~~~~~~~~~~~~~~-----~~~~~~~W~~~   99 (118)
T cd03431          31 WEFPSVEWEEEADGEEALLSALKKALRL---SLEP-LGTVKHTFT--HFRLTLHVYLARLEGDL-----LAPDEGRWVPL   99 (118)
T ss_pred             eeCCCccccCCcCHHHHHHHHHHHHhCc---cccc-ceeEEEecC--CeEEEEEEEEEEEeCCC-----cCccccEEccH
Confidence            8999999999999999999999988765   2222 445444433  22334566666554321     23446799999


Q ss_pred             HHHHHhcCchhHHHHH
Q 033333           81 AEARKVCQHWWMKEAL   96 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~   96 (121)
                      +++..+.....++.++
T Consensus       100 eel~~~~~p~~~~kil  115 (118)
T cd03431         100 EELDEYALPTVMRKIL  115 (118)
T ss_pred             HHHhhCCCCHHHHHHH
Confidence            9999876555444444

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.50  E-value=6.5e-07  Score=58.41  Aligned_cols=82  Identities=16%  Similarity=0.158  Sum_probs=60.3

Q ss_pred             CcccCCCCCHHHHHHHHHHHHhCceee---eecceeeeeEeeeCCCCC---eeEEEEEEeEeccccccccc-CCcceeEE
Q 033333            5 KGGWEIDESIQEAALRETIEEAGVTGI---VECELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPE-KNVRSRKW   77 (121)
Q Consensus         5 gG~ve~gE~~~eaa~REl~EEtG~~~~---~~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~-~e~~~~~W   77 (121)
                      .||--+||+..+||+|-+..|.||.+.   .... +..|.|.......   ..+..+|.+......  .++ +|..+++|
T Consensus        68 CsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~i-l~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~--~~npdEV~~~~w  144 (185)
T COG1443          68 CSHPLPGESNEDAARRRLAYELGIEPDQYDKLEI-LPRFRYRAADPDGIVENEICPVLAARLDSAL--DPNPDEVMDYRW  144 (185)
T ss_pred             cCCCcCCCchHHHHHHHHHHHhCCCCcccCcccc-ccceEEeccCCCCcceeeeeeEEEEeecCCC--CCChHHhhheec
Confidence            477789999999999999999999976   2333 6667776655332   445566666655533  333 68888999


Q ss_pred             EeHHHHHHhcCc
Q 033333           78 MSVAEARKVCQH   89 (121)
Q Consensus        78 ~~~~~l~~~~~~   89 (121)
                      ++++++.++..+
T Consensus       145 v~~e~l~~~~~~  156 (185)
T COG1443         145 VSPEDLKEMVDA  156 (185)
T ss_pred             cCHHHHHHhhcC
Confidence            999999998654

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.97  E-value=2.5e-05  Score=52.91  Aligned_cols=27  Identities=30%  Similarity=0.224  Sum_probs=25.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhC
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAG   27 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG   27 (121)
                      |.+|||.||+||.+-.+.+||+.||+=
T Consensus       152 WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  152 WAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             ccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999964

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.70  E-value=0.00046  Score=44.81  Aligned_cols=81  Identities=23%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             CcccCCCC--CH-HHH----HHHHHHHHhCceee---eecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcce
Q 033333            5 KGGWEIDE--SI-QEA----ALRETIEEAGVTGI---VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRS   74 (121)
Q Consensus         5 gG~ve~gE--~~-~ea----a~REl~EEtG~~~~---~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~   74 (121)
                      |||+..++  ++ .+.    +.||+.||.++.-.   .+.. +|-+......-+..++..+|+...........+.+..+
T Consensus        97 GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~-lGlINdd~neVgkVHiG~lf~~~~k~ndvevKEkd~~~  175 (203)
T COG4112          97 GGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEF-LGLINDDTNEVGKVHIGALFLGRGKFNDVEVKEKDLFE  175 (203)
T ss_pred             ccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhhee-eeeecCCCcccceEEEEEEEEeeccccceeeeecceee
Confidence            78888755  33 333    46999999999843   3444 55543322222335667888887665433334467778


Q ss_pred             eEEEeHHHHHHh
Q 033333           75 RKWMSVAEARKV   86 (121)
Q Consensus        75 ~~W~~~~~l~~~   86 (121)
                      .+|+...++...
T Consensus       176 ~kwik~~ele~~  187 (203)
T COG4112         176 WKWIKLEELEKF  187 (203)
T ss_pred             eeeeeHHHHHHH
Confidence            899999999874

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.51  E-value=3.9e-05  Score=54.74  Aligned_cols=79  Identities=20%  Similarity=0.246  Sum_probs=48.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEe-Eeccc--ccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPL-LVQDQ--LAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~-~~~~~--~~~~~~~e~~~~~W   77 (121)
                      |.||.|++..+|+-..||.||+.||||.+......   ...+....... .....|.. -+...  ....-..|...+.|
T Consensus       108 w~fprgK~~kdesd~~caiReV~eetgfD~skql~---~~e~Ie~nI~d-q~~~~fIi~gvs~d~~f~~~v~~eis~ihW  183 (348)
T KOG2937|consen  108 WSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQ---DNEGIETNIRD-QLVRLFIINGVSEDTNFNPRVRKEISKIHW  183 (348)
T ss_pred             ccccCccccccchhhhcchhcccchhhcCHHHHhc---cccCcccchhh-ceeeeeeeccceeeeecchhhhccccceee
Confidence            89999999999999999999999999999754221   11111111111 11222332 11111  22222357777899


Q ss_pred             EeHHHH
Q 033333           78 MSVAEA   83 (121)
Q Consensus        78 ~~~~~l   83 (121)
                      +.++++
T Consensus       184 ~~l~~l  189 (348)
T KOG2937|consen  184 HYLDHL  189 (348)
T ss_pred             eehhhh
Confidence            999998

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=97.33  E-value=0.0004  Score=42.49  Aligned_cols=87  Identities=15%  Similarity=0.077  Sum_probs=48.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |+||.-.++. ++..+.+.+.+.+..|+.+..... ++.+.+.-+  +.+....+|.+.+......    .....+|+++
T Consensus        26 wefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~-~~~v~H~fS--H~~~~~~~~~~~~~~~~~~----~~~~~~W~~~   97 (114)
T PF14815_consen   26 WEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEP-LGTVKHVFS--HRRWTIHVYEVEVSADPPA----EPEEGQWVSL   97 (114)
T ss_dssp             EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S--SEEEEEE-S--SEEEEEEEEEEEEE-SS--------TTEEEEEG
T ss_pred             cccCEeCccC-CCCHHHHHHHHHHHcCCChhhhee-cCcEEEEcc--ceEEEEEEEEEEecCCCCC----CCCCcEEEEH
Confidence            7888877663 333555666677788988877666 887766544  3444567777776664332    3456899999


Q ss_pred             HHHHHhcCchhHHHH
Q 033333           81 AEARKVCQHWWMKEA   95 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~   95 (121)
                      +++.++.....++.+
T Consensus        98 ~~l~~~~~p~~~~ki  112 (114)
T PF14815_consen   98 EELDQYPLPTPMRKI  112 (114)
T ss_dssp             GGGGGS---HHHHHH
T ss_pred             HHHhhCCCCHHHHHH
Confidence            999886655544443

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=97.09  E-value=0.0022  Score=45.60  Aligned_cols=79  Identities=16%  Similarity=0.106  Sum_probs=56.1

Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeHH
Q 033333            2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVA   81 (121)
Q Consensus         2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~   81 (121)
                      ++-+|-|++.-++.|-|..|+.||.|..+....+ +-+++|...-+..-.-.+.|++++.+...........+-+..+++
T Consensus        82 elc~g~idke~s~~eia~eev~eecgy~v~~d~l-~hv~~~~~g~~~s~sa~~l~y~ei~es~kis~gggv~~~~~~~~~  160 (405)
T KOG4432|consen   82 ELCAGLIDKELSPREIASEEVAEECGYRVDPDDL-IHVITFVVGAHQSGSAQHLYYAEIDESMKISEGGGVITKVYYPVN  160 (405)
T ss_pred             eeeccccccccCHHHHhHHHHHHHhCCcCChhHc-eEEEEEEeccccCccchheeeeecchhhccccCCceeeEEEEeeh
Confidence            4678999999999999999999999999988777 777877766554434457788887765433333333333444433

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.92  E-value=0.007  Score=40.71  Aligned_cols=74  Identities=16%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             CCHHHHHHHHHHHHhCceeeeec-----ceeeeeEeeeCCCCC---eeEEEEEEeEeccccccccc-CCcceeEEEeHHH
Q 033333           12 ESIQEAALRETIEEAGVTGIVEC-----ELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPE-KNVRSRKWMSVAE   82 (121)
Q Consensus        12 E~~~eaa~REl~EEtG~~~~~~~-----~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~~~~~   82 (121)
                      .....||.|-|+=|.||....+.     . ++.+.|..+..+.   +.  +-|.+-........|+ +|..+++|++.++
T Consensus       103 lGVr~AAqRkL~~ELGIp~e~v~pee~~~-ltrihYkA~sdg~wGEhE--iDYiL~~~~~~~~nPnpnEv~e~ryvs~ee  179 (225)
T KOG0142|consen  103 LGVRRAAQRKLKAELGIPLEEVPPEEFNF-LTRIHYKAPSDGIWGEHE--IDYILFLVKDVTLNPNPNEVSEIRYVSREE  179 (225)
T ss_pred             HHHHHHHHHHHHHhhCCCccccCHHHccc-ceeeeeecCCCCCcccce--eeEEEEEeccCCCCCChhhhhHhheecHHH
Confidence            35788999999999999975443     4 7777776655432   33  2333333334444555 7888999999999


Q ss_pred             HHHhcC
Q 033333           83 ARKVCQ   88 (121)
Q Consensus        83 l~~~~~   88 (121)
                      +..+..
T Consensus       180 lkel~~  185 (225)
T KOG0142|consen  180 LKELVA  185 (225)
T ss_pred             HHHHHh
Confidence            999864

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=96.43  E-value=0.01  Score=42.28  Aligned_cols=89  Identities=20%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHhCceeeeecce-eeeeEeeeCCCCCeeEEEEEEeEecccc------cccccCCcce
Q 033333            2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LGEWNFKSRAHNTDYQGYMFPLLVQDQL------AEWPEKNVRS   74 (121)
Q Consensus         2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~-l~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~~~~e~~~   74 (121)
                      +|-.|.|+..-+..+-|.||.-||.|.++....+. ...  |.+.-+..-..-.+|+.++.+..      ....++|..+
T Consensus       287 ELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~--y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IE  364 (405)
T KOG4432|consen  287 ELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAK--YISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIE  364 (405)
T ss_pred             eeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhhe--eecccCCcCCeeEEEEEEeehhhccCCCCCcccccceee
Confidence            35678999888999999999999999997554431 222  33332211112245555554432      1122357778


Q ss_pred             eEEEeHHHHHHhcCchhH
Q 033333           75 RKWMSVAEARKVCQHWWM   92 (121)
Q Consensus        75 ~~W~~~~~l~~~~~~~~~   92 (121)
                      ..=+++++++.++..+.+
T Consensus       365 vv~lsle~a~~~~~q~~I  382 (405)
T KOG4432|consen  365 VVRLSLEDAPSLYRQHNI  382 (405)
T ss_pred             EEEechhhhhHHHhccCC
Confidence            899999999998765533

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=95.20  E-value=0.063  Score=37.42  Aligned_cols=83  Identities=18%  Similarity=0.236  Sum_probs=55.1

Q ss_pred             CCcccCCCCCHHHHHHHHHHHHhCceeee-ec-ceeeeeEeee---CCCCCeeEEEEEEeEecccccccccC-CcceeEE
Q 033333            4 PKGGWEIDESIQEAALRETIEEAGVTGIV-EC-ELLGEWNFKS---RAHNTDYQGYMFPLLVQDQLAEWPEK-NVRSRKW   77 (121)
Q Consensus         4 PgG~ve~gE~~~eaa~REl~EEtG~~~~~-~~-~~l~~~~~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~-e~~~~~W   77 (121)
                      -+|.+--|-.+.++|++|..||+.+.... .. ...|+++|.+   +.+-....-++|-+.++.+..+.+++ |......
T Consensus       170 vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~L  249 (306)
T KOG4313|consen  170 VAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEVQAFEL  249 (306)
T ss_pred             hccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEEeccCchhhcCCCCCCceeeEee
Confidence            47888889999999999999999998622 11 1256666553   21111233477778877776666654 4455678


Q ss_pred             EeHHHHHHh
Q 033333           78 MSVAEARKV   86 (121)
Q Consensus        78 ~~~~~l~~~   86 (121)
                      +++.+..+.
T Consensus       250 ltl~~~v~~  258 (306)
T KOG4313|consen  250 LTLKDCVER  258 (306)
T ss_pred             ecHHHHHHH
Confidence            887776553

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=94.78  E-value=0.15  Score=34.11  Aligned_cols=83  Identities=13%  Similarity=0.036  Sum_probs=45.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCcee------eeecceeeeeEeee----------CC-CCCeeEEEEEEeEeccc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTG------IVECELLGEWNFKS----------RA-HNTDYQGYMFPLLVQDQ   63 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~------~~~~~~l~~~~~~~----------~~-~~~~~~~~~f~~~~~~~   63 (121)
                      +.||||.+.+||+..++..|.+.+-.|...      .+... +|.|-.+.          .+ ........+|.+.+...
T Consensus        70 fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~-l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~  148 (188)
T PF13869_consen   70 FKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGEC-LGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEK  148 (188)
T ss_dssp             EE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEE-EEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SS
T ss_pred             ccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCE-EEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCC
Confidence            458999999999999999999999988752      33334 66653211          11 11234567788777664


Q ss_pred             ccccccCCcceeEEEeHHHHHH
Q 033333           64 LAEWPEKNVRSRKWMSVAEARK   85 (121)
Q Consensus        64 ~~~~~~~e~~~~~W~~~~~l~~   85 (121)
                      ...... ....+.-+++=|+-+
T Consensus       149 ~~F~VP-kn~kL~AvPLFeLyd  169 (188)
T PF13869_consen  149 CLFAVP-KNMKLVAVPLFELYD  169 (188)
T ss_dssp             EEEEEE-TTSEEEEEEHHHHTT
T ss_pred             ceEecC-CCCeEEeecHhhhhc
Confidence            332211 345677778666643

...

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=94.54  E-value=0.16  Score=35.40  Aligned_cols=87  Identities=14%  Similarity=0.206  Sum_probs=54.3

Q ss_pred             CccCCccc-CCCCCHHHHHHHHHHHHhCceeee---ecceeeeeEeeeCCCCC-----eeEEEEEEeEecccccccccCC
Q 033333            1 MLFPKGGW-EIDESIQEAALRETIEEAGVTGIV---ECELLGEWNFKSRAHNT-----DYQGYMFPLLVQDQLAEWPEKN   71 (121)
Q Consensus         1 W~lPgG~v-e~gE~~~eaa~REl~EEtG~~~~~---~~~~l~~~~~~~~~~~~-----~~~~~~f~~~~~~~~~~~~~~e   71 (121)
                      |.||.+.+ ++++++..+|.|.|+.-.|=....   ....+|.+.+.++....     ...+.+|.+........ .++.
T Consensus       154 w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k~~lv~~~~~-kn~n  232 (263)
T KOG4548|consen  154 WIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFKASLVANSNQ-KNQN  232 (263)
T ss_pred             eeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEeeeeeccccch-hccc
Confidence            89999999 899999999999999998866432   12224533332222211     13345555554443211 1222


Q ss_pred             cceeEEEeHHHHHHhcC
Q 033333           72 VRSRKWMSVAEARKVCQ   88 (121)
Q Consensus        72 ~~~~~W~~~~~l~~~~~   88 (121)
                      -.+..|++-+++.+.+.
T Consensus       233 ~edfvWvTkdel~e~l~  249 (263)
T KOG4548|consen  233 KEDFVWVTKDELGEKLP  249 (263)
T ss_pred             ccceEEechHHHhhhcc
Confidence            33489999999988765

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=91.15  E-value=0.26  Score=32.51  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=24.8

Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHhC
Q 033333            2 LFPKGGWEIDESIQEAALRETIEEAG   27 (121)
Q Consensus         2 ~lPgG~ve~gE~~~eaa~REl~EEtG   27 (121)
                      .+|||.+.+||+-.+...|-+.|-.|
T Consensus        97 KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   97 KLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             ecCCCccCCCcchhHHHHHHHHHHhc
Confidence            48999999999999999999999999

>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []

Probab=85.66  E-value=0.92  Score=22.45  Aligned_cols=22  Identities=32%  Similarity=0.206  Sum_probs=11.9

Q ss_pred             CcccCCCCCHHHHHHHHHHHHh
Q 033333            5 KGGWEIDESIQEAALRETIEEA   26 (121)
Q Consensus         5 gG~ve~gE~~~eaa~REl~EEt   26 (121)
                      ||-..+|--+.-++.||+-||.
T Consensus        15 ggLasPgPvp~~~alkELIeEL   36 (43)
T PF03487_consen   15 GGLASPGPVPSSTALKELIEEL   36 (43)
T ss_dssp             --------S-HHHHHHHHHHHH
T ss_pred             cccCCCCCCCchHHHHHHHHHH
Confidence            6777788888899999999995

It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.

>PRK10880 adenine DNA glycosylase; Provisional

Probab=83.54  E-value=6.3  Score=29.13  Aligned_cols=83  Identities=16%  Similarity=0.117  Sum_probs=39.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||+.  +.    .+ ..++..|+.|+....... ++.+.|..++  ..-...+|.+........ ..  .....|+++
T Consensus       259 ~~fP~~--~~----~~-~~~~~~~~~~~~~~~~~~-~~~~~H~fTH--~~~~~~~~~~~~~~~~~~-~~--~~~~~w~~~  325 (350)
T PRK10880        259 FCFPQF--AD----EE-ELRQWLAQRGIAADNLTQ-LTAFRHTFSH--FHLDIVPMWLPVSSFTGC-MD--EGNGLWYNL  325 (350)
T ss_pred             ccCCCC--cc----hh-hHHHHHHhcCCchhhhcc-cCceEEEEee--EEEEEEEEEEEccccccc-cC--CcCCeEech
Confidence            788863  21    11 245566777875322222 4444443331  112223444433221110 11  123469999


Q ss_pred             HHHHHhcCchhHHHHH
Q 033333           81 AEARKVCQHWWMKEAL   96 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~   96 (121)
                      +++..+.....++.++
T Consensus       326 ~~~~~~~~p~~~~k~l  341 (350)
T PRK10880        326 AQPPSVGLAAPVERLL  341 (350)
T ss_pred             HHhcccCCcHHHHHHH
Confidence            9999876655444444

>PF14443 DBC1: DBC1

Probab=81.55  E-value=8.6  Score=24.16  Aligned_cols=23  Identities=13%  Similarity=0.059  Sum_probs=19.3

Q ss_pred             CCHHHHHHHHHHHHhCceeeeec
Q 033333           12 ESIQEAALRETIEEAGVTGIVEC   34 (121)
Q Consensus        12 E~~~eaa~REl~EEtG~~~~~~~   34 (121)
                      .++..||+|=+++-|||+.....
T Consensus        40 ~~LI~TAiR~~K~~tgiDLS~Ct   62 (126)
T PF14443_consen   40 SVLIRTAIRTCKALTGIDLSNCT   62 (126)
T ss_pred             HHHHHHHHHHHHHHhccchhhcC
Confidence            36788999999999999976544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
2fvv_A	194	Human Diphosphoinositol Polyphosphate Phosphohydrol		2e-07
2duk_A	138	Crystal Structure Of Ms0616 Length = 138		7e-07
3mcf_A	136	Crystal Structure Of Human Diphosphoinositol Polyph		2e-05

>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 Length = 194

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 2   LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
           + P GG E +E    AA+RE  EEAGV G +   L+G +  + R H T    Y++ L+V 
Sbjct: 69  IVPGGGMEPEEEPSVAAVREVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVT 123
Query: 62  DQLAEWPEK-NV-RSRKWMSVAEARKVCQH 89
           + L +W +  N+ R R+W  + +A KV Q+
Sbjct: 124 EVLEDWEDSVNIGRKREWFKIEDAIKVLQY 153

>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616 Length = 138

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 2   LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
           + P GG E +E    AA+RE  EEAGV G +   LLG +  + R H T    Y++ L V 
Sbjct: 39  IVPGGGMEPEEEPGGAAVREVYEEAGVKGKL-GRLLGIFENQDRKHRT----YVYVLTVT 93
Query: 62  DQLAEWPEK-NV-RSRKWMSVAEARKVCQ 88
           + L +W +  N+ R R+W  V +A KV Q
Sbjct: 94  EILEDWEDSVNIGRKREWFKVEDAIKVLQ 122

>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate Phosphohydrolase 3-Alpha Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 2   LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
           + P GG E +E    AA+RE  EEAGV G +   LLG +    +  + +++ Y++ L V 
Sbjct: 31  IVPGGGMEPEEEPGGAAVREVYEEAGVKGKL-GRLLGVFE---QNQDPEHRTYVYVLTVT 86
Query: 62  DQLAEWPEKNV---RSRKWMSVAEARKVCQ 88
           + L +W E +V   R R+W  V +A KV Q
Sbjct: 87  ELLEDW-EDSVSIGRKREWFKVEDAIKVLQ 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	7e-23
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	4e-11
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	1e-10
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	3e-10
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	1e-08
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	1e-08
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	2e-08
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-08
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	2e-07
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	4e-07
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	8e-07
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	1e-06
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	2e-06
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	3e-06
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	3e-06
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	3e-06
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	4e-06
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	4e-06
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	2e-05
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	2e-05
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	3e-05
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	4e-05
3exq_A	161	Nudix family hydrolase; protein structure initiati	4e-05
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	5e-05
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	7e-05
3grn_A	153	MUTT related protein; structural genomics, hydrola	9e-05
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	1e-04
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	1e-04
2b06_A	155	MUTT/nudix family protein; structural genomics, P	2e-04
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	2e-04
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	2e-04
3f13_A	163	Putative nudix hydrolase family member; structural	2e-04
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	3e-04
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	3e-04
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	3e-04
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	4e-04
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	4e-04
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	5e-04
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	7e-04
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	7e-04
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	8e-04

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 87.0 bits (215), Expect = 7e-23
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
            P GG E +E    AA+RE  EEAGV G +   L+G +  + R H T    Y++ L+V +
Sbjct: 70  VPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLVGIFENQERKHRT----YVYVLIVTE 124

Query: 63  QLAEWPEKN--VRSRKWMSVAEARKVCQHWWMKEA 95
            L +W +     R R+W  + +A KV Q+    +A
Sbjct: 125 VLEDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQA 159

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 55.5 bits (134), Expect = 4e-11
 Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 2/107 (1%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG--EWNFKSRAHNTDYQGYMFPLLV 60
            PKG  E  E   E ALR T EEAG+       + G          +      Y    + 
Sbjct: 45  PPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVK 104

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ 107
              +        ++ +W+ + EA ++ Q   MK AL      L S +
Sbjct: 105 DYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCSIE 151

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 53.4 bits (128), Expect = 3e-10
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-----FKSRAHNTDYQGYMFP 57
           F  GG E +E+I E A RE+IEE  +   V+   L           S         Y F 
Sbjct: 35  FVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFA 94

Query: 58  LLVQDQLAEWPEKN-VRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQL 108
           + +     +          +W+S   A ++ +    K AL  L  RL +  +
Sbjct: 95  IDLTSCSYQVTLSLEHSELRWVSYESAIQLLEWDSNKTALYELNERLKNNDM 146

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
            P G  E  E+ +EA  RE +EE G++  + C L     +    H            V +
Sbjct: 45  LPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVAN 104

Query: 63  QLAEWPEKN--VRSRKWMSVAEARKVCQHWWMKEALDRLV 100
              +  E      +  W++  EA ++ +    + A+++ +
Sbjct: 105 TWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWL 144

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 10/104 (9%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE---WNFKSRAHNTDYQGYMFPLL 59
           FPKG  E  ES++EAA+RE  EE GV   V    L      N K       +       L
Sbjct: 28  FPKGHPEPGESLEEAAVREVWEETGVRAEVL-LPLYPTRYVNPKGVEREVHW------FL 80

Query: 60  VQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 103
           ++ + A   E+ +    W S  EAR +         L+  + RL
Sbjct: 81  MRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL 124

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
            P G  E  ESI +A  RE +EE G +  +   L G +++   ++ T Y  + F   V  
Sbjct: 37  QPAGHLEPGESIIQACSREVLEETGHS-FLPEVLTGIYHWTCASNGTTYLRFTFSGQVVS 95

Query: 63  QLAEWPEKN-VRSRKWMSVAEAR 84
              +      +    W S+ E R
Sbjct: 96  FDPDRKLDTGIVRAAWFSIDEIR 118

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIV-----ECELLGEWNFKSRAHNTDYQGYMFP 57
            PKG  +  E   +AA+RET EEA +T        +C     +  K +  +  Y    + 
Sbjct: 34  PPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKY----WL 89

Query: 58  LLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR 98
             + +          ++ KW  + +A K+  +  M   L +
Sbjct: 90  AKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRK 130

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
           FP+G    DE+  +  +RE  EE G    +   +      +      +Y+ ++   + + 
Sbjct: 32  FPRGKISKDENDIDCCIREVKEEIGFD--LTDYIDDNQFIERNIQGKNYKIFLISGVSEV 89

Query: 63  -QLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 96
                     +   +W    +  K      +K  L
Sbjct: 90  FNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYL 124

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
            P G  E DE++ EAA RE  EE G++       +    + +    T +  ++F + ++ 
Sbjct: 33  QPAGHLEADETLVEAAARELWEETGIS-AQPQHFIRMHQWIAP-DKTPFLRFLFAIELEQ 90

Query: 63  QLAEWPEKN-VRSRKWMSVAEARK 85
                P  + +   +W+S  E  +
Sbjct: 91  ICPTQPHDSDIDCCRWVSAEEILQ 114

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 45.0 bits (106), Expect = 8e-07
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
           FPKG  + DES  + A+RE  EE G        +             + + Y+ P +  D
Sbjct: 130 FPKGKIDKDESDVDCAIREVYEETGFD--CSSRINPNEFIDMTIRGQNVRLYIIPGISLD 187

Query: 63  -QLAEWPEKNVRSRKWMSVAE 82
            +      K +   +W ++ +
Sbjct: 188 TRFESRTRKEISKIEWHNLMD 208

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 6   GGW-EIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYM 55
           GGW ++D+S+++  ++E  EEAG+    +  ++   +              
Sbjct: 97  GGWCDVDQSVKDNVVKEVKEEAGLDVEAQ-RVVAILDKHKNNPAKSAHRVT 146

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 6   GGW-EIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYM 55
           GGW ++  +  E A +E  EE G       +LL  ++ +    +       
Sbjct: 96  GGWADVGYTPTEVAAKEVFEETGYEVDHF-KLLAIFDKEKHQPSPSATHVY 145

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPL 58
           P G  E  ESI E   RE  EE G+T +   EL G ++            +M   
Sbjct: 30 APGGKMEAGESILETVKREYWEETGIT-VKNPELKGIFSMVIFDEGKIVSEWMLFT 84

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 38
           P G  E  E+I EA  RE  EEAG+    E  LL 
Sbjct: 50 LPAGRMEPGETIVEALQREVKEEAGLHCEPE-TLLS 84

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
              G  E  E+  +AA+RE  EE  +  + E   L +           +  + +   V  
Sbjct: 38  SVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTR 97

Query: 63  QLAEW------PEKNVRSR-----KWMSVAEARKVCQHWWMKEALDRLVMRL 103
               W       E+ +        KW+    A  + + W  ++A+++ V+  
Sbjct: 98  NTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINA 149

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 6   GGW-EIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR--AHNTDYQGYMFPLLVQD 62
           GG+ + +ES ++AA RE  EE  +T I      G ++   R        + +   +  + 
Sbjct: 73  GGFVDENESAEQAAERELEEETSLTDIP-LIPFGVFDKPGRDPRGWIISRAFYAIVPPEA 131

Query: 63  QLAEWPEKNVRSRKWMSVAEARKVC---QHWWM-KEALDRLVMRLTSQQLH 109
                   +        + EA ++     H  M K+A   +       + H
Sbjct: 132 LEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKAFSAITEEFLLTEGH 182

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIV 32
          +PKG  E +E+ + AA+RE  EE G    +
Sbjct: 53 WPKGKLEQNETHRHAAVREIGEETGSPVKL 82

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 6  GGW-EIDESIQEAALRETIEEAGVTGIVECELLG 38
          GG+ E+ E ++EAA RE  EE G+   +  +L+G
Sbjct: 43 GGFVEVGERVEEAAAREMREETGLEVRLH-KLMG 75

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ- 61
              G  +++ES ++A +RE  EE GV       L      +       Y    F  LV  
Sbjct: 43  TIGGAIQVNESTEDAVVREVKEELGVKAQAGQ-LAFVVENRFEVDGVSYHNIEFHYLVDL 101

Query: 62  ---DQLAEWPEKNVRSRKWMSVAEARKV 86
                L    ++  +  +W+ + + + +
Sbjct: 102 LEDAPLTMQEDEKRQPCEWIDLDKLQNI 129

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 2   LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
           ++P G  E +E+  EA  RE  EE G+         G  +  +             +   
Sbjct: 26  IYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYP 85

Query: 62  DQ---------LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 100
           ++         L +    ++++ +W+ V E  ++     +++ +   +
Sbjct: 86  EETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVRKVVSLAL 133

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMF 56
           FP G  E +E I + A+RE  EE G+       +L      +            
Sbjct: 56  FPGGLSEPEEDIGDTAVREVFEETGIKSEFR-SVLSIRQQHTNPGAFGKSDMYI 108

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMF 56
          FP G  E+ E    AA+RE  EE G+  +      G   +          G ++
Sbjct: 41 FPGGHVEVGEPCATAAIREVFEETGLR-LSGVTFCGTCEWFDDDRQHRKLGLLY 93

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLL--- 59
            P G  E  E+++EA +RE  EE G+   ++ +LL   +    + +  +  ++   +   
Sbjct: 50  LPGGRVENGETLEEAMIREMREETGLEVKIK-KLLYVCDKPDASPSLLHITFLLERIEGE 108

Query: 60  VQDQLAEWPEKNVRSRKWMSVAE 82
           +     E+    +   + + + E
Sbjct: 109 ITLPSNEFDHNPIHDVQMVPINE 131

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 39.3 bits (91), Expect = 7e-05
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 11/113 (9%)

Query: 2   LFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL----LGEWNFKSRAHNTDYQGYMFP 57
            +  G  + ++   + A++E  EE GV            L             Y      
Sbjct: 72  AWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLH 131

Query: 58  LLVQDQLAEWPEKNVRSR-------KWMSVAEARKVCQHWWMKEALDRLVMRL 103
           L +   +    ++ +  +        W+   E  K C    M    ++L+ +L
Sbjct: 132 LNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKL 184

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 38.5 bits (90), Expect = 9e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 43
           P G    DES++E   RE  EE G+T +V  ++ G+ NF+
Sbjct: 40 LPGGKVNPDESLKEGVAREVWEETGIT-MVPGDIAGQVNFE 79

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGV 28
          FP G  +  E+  +AALRE  EE  +
Sbjct: 68 FPGGSLDAGETPTQAALREAQEEVAL 93

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVT 29
           P G  E +E++ + A RET+EEA   
Sbjct: 69 LPAGFMENNETLVQGAARETLEEANAR 95

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG--EWNFKSRAH 47
          FP G  E DE+  E+ +RE  EE G+T I   +L+G   W   +   
Sbjct: 40 FPGGHVENDEAFAESVIREIYEETGLT-IQNPQLVGIKNWPLDTGGR 85

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMF 56
              G  +  E+I++ A RE  EE+G+T +     +G+  F+          ++F
Sbjct: 54  GFGGKVQEGETIEDGARRELQEESGLT-VDALHKVGQIVFEFVGEPELMDVHVF 106

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH 47
           P G     E   +A +RE  EE G+  I     L +      AH
Sbjct: 41 LPGGKANRGELRSQALIREIREETGLR-INSMLYLFDHITPFNAH 84

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
            P G  + DE+++ A  R T+ E G+   +               N     +    +V  
Sbjct: 48  VPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLG 107

Query: 63  QLAEWPEKNVRSR-------KWMSVAEARK 85
                 E+ +          +W++      
Sbjct: 108 FRFRVSEEELLLPDEQHDDYRWLTSDALLA 137

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 14/58 (24%), Positives = 19/58 (32%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 60
              GG E  E I+EA  RE  EE G   I+       +    R             ++
Sbjct: 59  LSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMI 116

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 3  FPKGGW-EIDESIQEAALRETIEEAGVTGIVECEL 36
           P GG  +  E ++ A  RE  EE G+       L
Sbjct: 58 LP-GGKVDWLEPVERAVCREIEEELGIALERATLL 91

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 38
           P G  E  E+ Q+AA+RE  EE G+  +   + LG
Sbjct: 47 IPSGAVEDGENPQDAAVREACEETGLR-VRPVKFLG 81

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 6   GGW---EIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
           GG+     DES+++  LR+  E+  V      E L      SR          +  L+  
Sbjct: 57  GGFIDETCDESLEQTVLRKLAEKTAVVPPY-IEQLCTVGNNSRDARGWSVTVCYTALMSY 115

Query: 63  QLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ 106
           Q  +    +V   KW  +A+  ++   +   + +++   RLT +
Sbjct: 116 QACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLTQK 159

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 11/107 (10%)

Query: 6   GGW-EIDESIQEAALRETIEEAGVTGIVEC-ELLGEWNFKSR---------AHNTDYQGY 54
           GG+   +ES +++ LRET EE GV    E  E L  ++   R         ++       
Sbjct: 76  GGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEE 135

Query: 55  MFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM 101
                   +   W       +      E  ++        +L +  +
Sbjct: 136 PLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTL 182

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTG 30
           F KG  +  ES+ EAA RE  EE G   
Sbjct: 79  FSKGLIDPGESVYEAANRELKEEVGFGA 106

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 39
           P+GG +  E  + AA+RE  EE   TG+   E++ E
Sbjct: 42 MPQGGIDEGEDPRNAAIRELREE---TGVTSAEVIAE 75

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 3  FPKGGWEIDESIQEAALRETIEEAGVTG 30
           P G  E  E   EAA RE  E+ G++G
Sbjct: 64 IPAGLIEPGEDPLEAARRELAEQTGLSG 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.92
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.88
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.87
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.87
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.86
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.85
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.85
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.84
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.83
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.83
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.82
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.82
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.82
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.82
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.82
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.82
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.82
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.81
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.81
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.81
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.81
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.81
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.81
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.81
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.8
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.8
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.8
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.8
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.8
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.8
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.79
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.79
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.79
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.79
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.79
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.79
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.79
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.79
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.78
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.78
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.77
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.77
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.77
3f13_A	163	Putative nudix hydrolase family member; structural	99.76
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.76
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.76
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.76
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.75
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.75
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.74
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.74
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.74
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.74
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.74
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.74
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.73
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.73
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.73
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.73
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.72
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.72
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.72
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.71
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.71
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.68
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.64
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.64
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.63
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.58
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.58
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.52
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.51
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.48
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.38
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.35
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.19
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.98

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.92  E-value=2.2e-24  Score=135.87  Aligned_cols=103  Identities=24%  Similarity=0.286  Sum_probs=81.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCC--eeEEEEEEeEecccccccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT--DYQGYMFPLLVQDQLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~W~   78 (121)
                      |.||||++++|||+.+||+||++||||+.+..... ++.+.+.....+.  ...+++|.+....... .+++|..+++|+
T Consensus        27 W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~  104 (134)
T 3i7u_A           27 WSFPKGNIEPGEKPEETAVREVWEETGVKGEILDY-IGEIHYWYTLKGERIFKTVKYYLMKYKEGEP-RPSWEVKDAKFF  104 (134)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEEEEEEETTEEEEEEEEEEEEEEEEECC-CCCTTSSEEEEE
T ss_pred             EECCeeEecCCCCHHHHHHHHHHHhcCceEEEeee-eeeeeEEecCCCceEEEEEEEEEEEEcCCcC-cCChhheEEEEE
Confidence            89999999999999999999999999999988877 8876554443332  2345667777655443 345688899999


Q ss_pred             eHHHHHHhcCchhHHHHHHHHHHHhcc
Q 033333           79 SVAEARKVCQHWWMKEALDRLVMRLTS  105 (121)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~  105 (121)
                      +++++.+++.++..+.++..+.+.+.+
T Consensus       105 ~~~e~~~~l~~~~~r~il~~a~~l~~k  131 (134)
T 3i7u_A          105 PIKEAKKLLKYKGDKEIFEKALKLKEK  131 (134)
T ss_dssp             EHHHHHHHBCSHHHHHHHHHHHHHHHH
T ss_pred             EHHHHhhhcCChHHHHHHHHHHHHHHc
Confidence            999999999889888888887765543

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.88  E-value=2.1e-22  Score=129.25  Aligned_cols=105  Identities=28%  Similarity=0.198  Sum_probs=77.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEee--eCCCCCeeEEEEEEeEecccc-cccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK--SRAHNTDYQGYMFPLLVQDQL-AEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~--~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W   77 (121)
                      |.||||++++|||+.+||+||++||||+.+..... ++.+.+.  +..........+|.+...... ...+.+|..+++|
T Consensus        38 W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W  116 (155)
T 3u53_A           38 WTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTI-IEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRW  116 (155)
T ss_dssp             EECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEE-EEEEEEEEEEEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEE
T ss_pred             EECCeeeccCCCCHHHHHHHHHHHHHCCcccccee-eeeEeeeeecCCCcceeEEEEEEEEEeccCCccCCCcceeEEEE
Confidence            89999999999999999999999999999876655 5543322  122223334455555554433 2234467888999


Q ss_pred             EeHHHHHHhcCchhHHHHHHHHHHHhccc
Q 033333           78 MSVAEARKVCQHWWMKEALDRLVMRLTSQ  106 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  106 (121)
                      ++++++.+++.++.++.++..+.+.+.+.
T Consensus       117 ~~~~ea~~~~~~~~~~~~L~~a~~~L~~~  145 (155)
T 3u53_A          117 LGLEEACQLAQFKEMKAALQEGHQFLCSI  145 (155)
T ss_dssp             ECHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             eEHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            99999999998898888988887776543

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.87  E-value=3.4e-21  Score=119.10  Aligned_cols=99  Identities=28%  Similarity=0.271  Sum_probs=78.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+...  +.....++|.+...... ..+..|..+++|+++
T Consensus        26 w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~e~~~~~w~~~  101 (126)
T 1vcd_A           26 WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLP-LYPTRYVNP--KGVEREVHWFLMRGEGA-PRLEEGMTGAGWFSP  101 (126)
T ss_dssp             EECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEECT--TSCEEEEEEEEEEEESC-CCCCTTCCEEEEECH
T ss_pred             ccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccE-EeEEEEecC--CceEEEEEEEEEEcCCC-CCCCcceeeeEEcCH
Confidence            89999999999999999999999999999988777 887766543  23344566766554433 233467788999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHh
Q 033333           81 AEARKVCQHWWMKEALDRLVMRL  103 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~  103 (121)
                      +++.++...+..+.++..+.+++
T Consensus       102 ~el~~~~~~~~~~~~l~~~~~~l  124 (126)
T 1vcd_A          102 EEARALLAFPEDLGLLEVALERL  124 (126)
T ss_dssp             HHHHHHBCSHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcChhHHHHHHHHHHhc
Confidence            99999988888888888877654

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.86  E-value=4.8e-21  Score=120.12  Aligned_cols=101  Identities=20%  Similarity=0.174  Sum_probs=76.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCcee---eee-cceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTG---IVE-CELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~---~~~-~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~   76 (121)
                      |.||||++++||++++||+||++||||+.+   ... .. ++.+.+...  +.....++|.+...........+|..+++
T Consensus        32 w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~e~~~~~  108 (138)
T 1ktg_A           32 WTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDC-HETLFYEAK--GKPKSVKYWLAKLNNPDDVQLSHEHQNWK  108 (138)
T ss_dssp             EESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEE-EEEEEEEET--TEEEEEEEEEEEECSCCCCCCCTTEEEEE
T ss_pred             EeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccc-cceEEEEeC--CCceEEEEEEEEecCCcccCCCchhcEeE
Confidence            899999999999999999999999999954   433 22 445444433  23455677888766532223346778899


Q ss_pred             EEeHHHHHHhcCchhHHHHHHHHHHHhc
Q 033333           77 WMSVAEARKVCQHWWMKEALDRLVMRLT  104 (121)
Q Consensus        77 W~~~~~l~~~~~~~~~~~~~~~~~~~~~  104 (121)
                      |++++++.++...+..+.++..+.++++
T Consensus       109 W~~~~el~~~~~~~~~~~~l~~~~~~l~  136 (138)
T 1ktg_A          109 WCELEDAIKIADYAEMGSLLRKFSAFLA  136 (138)
T ss_dssp             EECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             eccHHHHHHhhccchHHHHHHHHHHHhh
Confidence            9999999999888888888888877663

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.85  E-value=1.3e-20  Score=119.82  Aligned_cols=106  Identities=25%  Similarity=0.189  Sum_probs=77.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeee-eEee---eC-CCCCeeEEEEEEeEecccc-cccccCCcce
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE-WNFK---SR-AHNTDYQGYMFPLLVQDQL-AEWPEKNVRS   74 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~-~~~~---~~-~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~   74 (121)
                      |.||||++++||++.+||+||++||||+.+......+.. +.+.   .. ........++|.+...... ...+.+|..+
T Consensus        33 w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~  112 (149)
T 3son_A           33 WQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSE  112 (149)
T ss_dssp             EECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSSCSEEEEEEEEEECTTTGGGCCCCTTEEE
T ss_pred             EeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCCceEeEEEEEEEEcCCCCCcccCCCceee
Confidence            899999999999999999999999999997653111221 1111   11 1223445577888876321 2222467888


Q ss_pred             eEEEeHHHHHHhcCchhHHHHHHHHHHHhccc
Q 033333           75 RKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  106 (121)
Q Consensus        75 ~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  106 (121)
                      ++|++++++.++...+..+.++..+.+++.++
T Consensus       113 ~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~  144 (149)
T 3son_A          113 LRWVSYESAIQLLEWDSNKTALYELNERLKNN  144 (149)
T ss_dssp             EEEECHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             EEEeCHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999998887665

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.85  E-value=2e-20  Score=119.14  Aligned_cols=99  Identities=22%  Similarity=0.302  Sum_probs=73.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc-ccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~   79 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+..+........++|.+....... ....++..+++|++
T Consensus        35 w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~  113 (153)
T 2b0v_A           35 LNQPAGHLEPGESIIQACSREVLEETGHSFLPEVL-TGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFS  113 (153)
T ss_dssp             EECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEE-EEEEEEEETTTTEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEE
T ss_pred             EECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceE-EEEEEEeCCCCCcEEEEEEEEEEeCCCCCCCCCCCCeeeEEEec
Confidence            89999999999999999999999999999988777 88876665543334455677777654332 22346777899999


Q ss_pred             HHHHHHh---cCchhHHHHHHHHH
Q 033333           80 VAEARKV---CQHWWMKEALDRLV  100 (121)
Q Consensus        80 ~~~l~~~---~~~~~~~~~~~~~~  100 (121)
                      ++++.++   ...+.++.++..++
T Consensus       114 ~~el~~~~~~~~~~~~~~~l~~~~  137 (153)
T 2b0v_A          114 IDEIRAKQAMHRTPLVMQCIEDYH  137 (153)
T ss_dssp             HHHHHHTGGGBSSTHHHHHHHHHH
T ss_pred             HHHHhhhhcccCcHHHHHHHHHHH
Confidence            9999995   34554555554443

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.84  E-value=2.9e-21  Score=127.41  Aligned_cols=106  Identities=19%  Similarity=0.146  Sum_probs=79.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc--cccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~   78 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+.+............+|.+......  .....+|..+++|+
T Consensus        69 w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~  147 (187)
T 3i9x_A           69 WAVPGGFVDENESAEQAAERELEEETSLTDIPLIP-FGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLF  147 (187)
T ss_dssp             EECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEE-EEEECCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEE
T ss_pred             EECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-EEEEcCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEE
Confidence            89999999999999999999999999999888777 8876654433333344455555443322  12234677889999


Q ss_pred             eHHHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           79 SVAEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                      +++++..+...+..+.++..+++++++..
T Consensus       148 ~~~el~~~~l~~~~~~il~~a~~~l~~~~  176 (187)
T 3i9x_A          148 PMTEALELPLAFDHLDMLKKAFSAITEEF  176 (187)
T ss_dssp             EHHHHTTSCBSTTHHHHHHHHHHHHHHHH
T ss_pred             eHHHcccCCCCccHHHHHHHHHHHHHhhh
Confidence            99999987666778888888888777654

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.83  E-value=1.7e-20  Score=120.12  Aligned_cols=101  Identities=17%  Similarity=0.151  Sum_probs=78.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc---ccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW---PEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~W   77 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+..   .  .....++|.+.........   ..+|..+++|
T Consensus        48 w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~---~--~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W  121 (156)
T 3gg6_A           48 WYLPAGRMEPGETIVEALQREVKEEAGLHCEPETL-LSVEER---G--PSWVRFVFLARPTGGILKTSKEADAESLQAAW  121 (156)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEE-EEEEES---S--TTEEEEEEEEEEEEECCCCGGGCSSSCSEEEE
T ss_pred             EECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeE-EEEEcC---C--CCEEEEEEEEEeeCCeeccCCCCCcceeeeEE
Confidence            89999999999999999999999999999988877 776542   1  1234567777655433221   2367788999


Q ss_pred             EeHHHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           78 MSVAEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                      ++++++.+++..+.++.++..+...+..+.
T Consensus       122 ~~~~el~~~~~~~~~~~~l~~~~~~~~~~~  151 (156)
T 3gg6_A          122 YPRTSLPTPLRAHDILHLVELAAQYRQQAR  151 (156)
T ss_dssp             EETTSCCSSBSCTHHHHHHHHHHHHHHHHH
T ss_pred             EcHHHCcccccchhHHHHHHHHHHHhhcCC
Confidence            999999999999998888888777665544

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.83  E-value=3.6e-20  Score=123.09  Aligned_cols=108  Identities=15%  Similarity=0.169  Sum_probs=71.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCce-eeeecceeeeeEeeeCCC--------C-CeeEEEEEEeEeccccccc-cc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVT-GIVECELLGEWNFKSRAH--------N-TDYQGYMFPLLVQDQLAEW-PE   69 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~-~~~~~~~l~~~~~~~~~~--------~-~~~~~~~f~~~~~~~~~~~-~~   69 (121)
                      |.||||++++||++.+||+||++||||+. +......+..+.+.....        . ..+...+|.+......... ..
T Consensus        71 w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
T 3fcm_A           71 WAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKE  150 (197)
T ss_dssp             EECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEETTEEECCEEEEEEEEEEECCTTSCCCCCC
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccccCcccCCceeEEEEEEEEeCCCcccCCCc
Confidence            89999999999999999999999999998 554221021222111110        0 1122355666555443323 23


Q ss_pred             CCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHhccccc
Q 033333           70 KNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQL  108 (121)
Q Consensus        70 ~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  108 (121)
                      +|..+++|++++++.++...+.++.++..+.+++.++..
T Consensus       151 ~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~~~~~  189 (197)
T 3fcm_A          151 DENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLKTQSK  189 (197)
T ss_dssp             ----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHHC---
T ss_pred             ccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Confidence            678889999999999999999999999999999887653

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.82  E-value=2.5e-20  Score=120.22  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=77.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+..+........++|.+.......  ...|..+++|+++
T Consensus        39 w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~  115 (161)
T 3exq_A           39 HSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTF-CGTCEWFDDDRQHRKLGLLYRASNFTGTL--KASAEGQLSWLPI  115 (161)
T ss_dssp             BBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEE-EEEEEEECSSCSSEEEEEEEEECCEESCC--CGGGTTTEEEECG
T ss_pred             EEccceecCCCCCHHHHHHHHHHHhhCcEecCCcE-EEEEecccCCCCeEEEEEEEEEeccCCcc--CCCccceEEEeeH
Confidence            67999999999999999999999999999988777 88877665444445556677766544332  2346677999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLVM  101 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~  101 (121)
                      +++.++...+.++.++..+.+
T Consensus       116 ~el~~~~~~~~~~~~l~~~~~  136 (161)
T 3exq_A          116 TALTRENSAASLPEFLQVFTG  136 (161)
T ss_dssp             GGCCTTTBCTTHHHHHHHHTT
T ss_pred             HHhhhCccChHHHHHHHHHhh
Confidence            999998777888888887766

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.82  E-value=1.8e-20  Score=118.74  Aligned_cols=100  Identities=20%  Similarity=0.260  Sum_probs=73.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeee--cceeeeeE---e--------eeCCCCCeeEEEEEEeEeccccccc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--CELLGEWN---F--------KSRAHNTDYQGYMFPLLVQDQLAEW   67 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~--~~~l~~~~---~--------~~~~~~~~~~~~~f~~~~~~~~~~~   67 (121)
                      |.||||++++||++.+||+||++||||+.+...  .. ++.+.   |        ..+........++|.+........ 
T Consensus        36 w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-  113 (150)
T 2o1c_A           36 WQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTL-IDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQI-  113 (150)
T ss_dssp             EESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCE-EEEEEEEEEECCGGGGGGBCTTCCEEEEEEEEEEESSCCCC-
T ss_pred             eECCccccCCCCCHHHHHHHHHHHHhCCCccccceeE-EeeeceeeeeeecccccccCCCCcceEEEEEEEEcCCCCCc-
Confidence            899999999999999999999999999997653  22 33221   1        112122345667888876654332 


Q ss_pred             ccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHH
Q 033333           68 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        68 ~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      ..+|..+++|++++++.++...+..+.++..+.++
T Consensus       114 ~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  148 (150)
T 2o1c_A          114 VFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVIN  148 (150)
T ss_dssp             CCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHTTC
T ss_pred             ChhHhhccEeecHHHHHhhhcCHHHHHHHHHHHHh
Confidence            23678889999999999998888888887776544

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.82  E-value=6.3e-20  Score=115.59  Aligned_cols=97  Identities=23%  Similarity=0.116  Sum_probs=76.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+...  +.....++|.+.......  ..+|..+++|+++
T Consensus        36 w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~~~~--~~~E~~~~~W~~~  110 (140)
T 3gwy_A           36 YEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEK-LLTVHHTYP--DFEITMHAFLCHPVGQRY--VLKEHIAAQWLST  110 (140)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EEEEECCCS--SCCEEEEEEEEEECCSCC--CCCSSCEEEEECH
T ss_pred             EECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceE-EEEEEEEeC--CceEEEEEEEEEecCCcc--cccccceeEeccH
Confidence            89999999999999999999999999999988877 887665444  234456778887665432  2357788999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      +++.++...+..+.+++.+.++
T Consensus       111 ~el~~~~~~~~~~~il~~~~~~  132 (140)
T 3gwy_A          111 REMAILDWAEADKPIVRKISEQ  132 (140)
T ss_dssp             HHHTTSCBCGGGHHHHHHHHC-
T ss_pred             HHHhhCCCCcccHHHHHHHHhC
Confidence            9999988888888888776644

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.82  E-value=1.3e-19  Score=115.59  Aligned_cols=99  Identities=20%  Similarity=0.329  Sum_probs=73.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccc-cCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~   79 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+.... ......++|.+.........+ .+|..+++|++
T Consensus        31 w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~  108 (153)
T 3shd_A           31 WNQPAGHLEADETLVEAAARELWEETGISAQPQHF-IRMHQWIAPD-KTPFLRFLFAIELEQICPTQPHDSDIDCCRWVS  108 (153)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEE-EEEEEECCTT-SCCEEEEEEEEECSSCCCCCCCSTTCCEEEEEC
T ss_pred             EECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcE-EEEEEEecCC-CceEEEEEEEEEccccCcCCCCcccceeeEEec
Confidence            89999999999999999999999999999988776 8877665553 334556778887766543333 46788899999


Q ss_pred             HHHHHHh--cCchhHHHHHHHHHH
Q 033333           80 VAEARKV--CQHWWMKEALDRLVM  101 (121)
Q Consensus        80 ~~~l~~~--~~~~~~~~~~~~~~~  101 (121)
                      ++++...  ...+..+.++..+.+
T Consensus       109 ~~el~~~~~~~~~~~~~~l~~~~~  132 (153)
T 3shd_A          109 AEEILQASNLRSPLVAESIRCYQS  132 (153)
T ss_dssp             HHHHHTCSCBSSTHHHHHHHHHHH
T ss_pred             HHHhhccccccCchHHHHHHHHHh
Confidence            9999432  345655556655554

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.82  E-value=3.2e-20  Score=119.26  Aligned_cols=97  Identities=14%  Similarity=0.127  Sum_probs=73.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccc-cCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~   79 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+...........++|.+.......... .+|..+++|++
T Consensus        56 w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~  134 (157)
T 4dyw_A           56 WGLPGGKVDWLEPVERAVCREIEEELGIALERATL-LCVVDHIDAANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFA  134 (157)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEE-EEEEEEEETTTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEE
T ss_pred             EECCcccCCCCCCHHHHHHHHHHHHHCcccccCcE-EEEEEeeccCCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEEC
Confidence            89999999999999999999999999999988777 88877666544445556777776554433222 35778899999


Q ss_pred             HHHHHHhcCchhHHHHHHHH
Q 033333           80 VAEARKVCQHWWMKEALDRL   99 (121)
Q Consensus        80 ~~~l~~~~~~~~~~~~~~~~   99 (121)
                      ++++.+. ..+..+.++..+
T Consensus       135 ~~el~~~-l~~~~~~~l~~l  153 (157)
T 4dyw_A          135 LDDLPQP-LTHATRIALEQV  153 (157)
T ss_dssp             TTSCCSS-BCHHHHHHHHHH
T ss_pred             HHHcccc-cCHHHHHHHHHH
Confidence            9999884 446556666554

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.82  E-value=1.2e-19  Score=115.83  Aligned_cols=100  Identities=19%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+....  .....++|.+....... .+.+|..+++|+++
T Consensus        38 w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~  113 (153)
T 3grn_A           38 WDLPGGKVNPDESLKEGVAREVWEETGITMVPGDI-AGQVNFELTE--KKVIAIVFDGGYVVADV-KLSYEHIEYSWVSL  113 (153)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSE-EEEEEEECSS--CEEEEEEEEEEECCCCC-CCCTTEEEEEEECH
T ss_pred             EECceeecCCCCCHHHHHHhhhhhhhCcEeecceE-EEEEEEecCC--ceEEEEEEEEEecCCcE-ecCCCcceEEEEEH
Confidence            89999999999999999999999999999988777 8877655442  33455667766554332 23467788999999


Q ss_pred             HHHHHhc-CchhHHHHHHHHHHHhc
Q 033333           81 AEARKVC-QHWWMKEALDRLVMRLT  104 (121)
Q Consensus        81 ~~l~~~~-~~~~~~~~~~~~~~~~~  104 (121)
                      +++.++. ..+.++.+++.+.+.-.
T Consensus       114 ~el~~~~~~~~~~~~~l~~l~~~~~  138 (153)
T 3grn_A          114 EKILGMETLPAYFRDFFERFDRENK  138 (153)
T ss_dssp             HHHTTCSSSCHHHHHHHHHHHHHHT
T ss_pred             HHhhhcccchHHHHHHHHHHhcccc
Confidence            9999987 78888888888775533

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.82  E-value=2.5e-20  Score=127.60  Aligned_cols=106  Identities=20%  Similarity=0.178  Sum_probs=81.2

Q ss_pred             CccCCcccCC--CCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333            1 MLFPKGGWEI--DESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~--gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~   78 (121)
                      |.||||++++  ||++++||+||++||||+.+....+ ++.+.......+...+.++|.+.+.........++..+++|+
T Consensus        53 W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~-l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~  131 (240)
T 3gz5_A           53 WGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQ-LCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWW  131 (240)
T ss_dssp             EECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEE-EEEEEESSSSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEE
T ss_pred             EECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceee-EEEeCCCccCCCceEEEEEEEEEecccccCCCCCcccceEEe
Confidence            8999999999  9999999999999999999988887 888876555444555667777766554332234677789999


Q ss_pred             eHHHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           79 SVAEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                      +++++.........+.++..+.++++.+.
T Consensus       132 ~~~el~~~~l~~dh~~il~~a~~rlr~kl  160 (240)
T 3gz5_A          132 PLADVLQMPLAFDHLQLIEQARERLTQKA  160 (240)
T ss_dssp             EHHHHTTSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             cHHHcccCCcchhHHHHHHHHHHHHHHhc
Confidence            99999865444456778888777776644

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.81  E-value=4.2e-20  Score=116.18  Aligned_cols=96  Identities=20%  Similarity=0.194  Sum_probs=70.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+.......+...++|.+.... . ..+.+|..+++|+++
T Consensus        39 w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~-~-~~~~~e~~~~~W~~~  115 (139)
T 2yyh_A           39 LALPGGFVEVGERVEEAAAREMREETGLEVRLHKL-MGVYSDPERDPRAHVVSVVWIGDAQG-E-PKAGSDAKKVKVYRL  115 (139)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEE-EEEECCTTSCTTSCEEEEEEEEEEES-C-CCCCTTEEEEEEECT
T ss_pred             EECccccCCCCCCHHHHHHHHHHHHHCCCcccceE-EEEECCCCcCCCceEEEEEEEEecCC-c-cCCCCCcceEEEEEH
Confidence            89999999999999999999999999999987776 77765533322334566778877633 2 223457788999999


Q ss_pred             HHHH--HhcCchhHHHHHHHHHH
Q 033333           81 AEAR--KVCQHWWMKEALDRLVM  101 (121)
Q Consensus        81 ~~l~--~~~~~~~~~~~~~~~~~  101 (121)
                      +++.  .+..+  .+.++..+++
T Consensus       116 ~el~~~~l~~~--~~~~l~~~l~  136 (139)
T 2yyh_A          116 EEIPLDKLVFD--HKKIILDFLK  136 (139)
T ss_dssp             TSCCGGGBCTT--HHHHHHHHHH
T ss_pred             HHCCHhhcCCC--HHHHHHHHHh
Confidence            9998  55443  3455555443

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.81  E-value=4e-20  Score=123.75  Aligned_cols=105  Identities=11%  Similarity=0.067  Sum_probs=82.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeC---CCCCeeEEEEEEeEecccccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR---AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W   77 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.....   ........++|.+....... .++.|..+++|
T Consensus        92 w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w  169 (205)
T 3q1p_A           92 WALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKL-LAIFDKEKHQPSPSATHVYKIFIGCEIIGGEK-KTSIETEEVEF  169 (205)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEEHHHHSCCCCSSCEEEEEEEEEEEEECC-CCCTTSCCEEE
T ss_pred             EECCcCccCCCCCHHHHHHHHHHHHHCCccccceE-EEEEeccccCCCCCCceEEEEEEEEEecCCcc-CCCCcceEEEE
Confidence            89999999999999999999999999999988777 777654222   12234455677777654432 33468888999


Q ss_pred             EeHHHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           78 MSVAEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                      +++++++.+...+.....+..+++.+.+..
T Consensus       170 ~~~~el~~l~~~~~~~~~i~~~~~~~~~~~  199 (205)
T 3q1p_A          170 FGENELPNLSIARNTEDQIKEMFAYMKDPQ  199 (205)
T ss_dssp             ECTTSCCCBCTTTCCHHHHHHHHHHHHCTT
T ss_pred             EeHHHhhhcCCCccHHHHHHHHHHHHhCCC
Confidence            999999999888888889999888776654

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.81  E-value=4.2e-19  Score=112.30  Aligned_cols=99  Identities=25%  Similarity=0.382  Sum_probs=74.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE-eeeCCCC---CeeEEEEEEeEecccccccccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-FKSRAHN---TDYQGYMFPLLVQDQLAEWPEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~-~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~e~~~~~   76 (121)
                      |.||||++++||++.+||+||+.||||+.+..... ++.+. +....+.   .....++|.+....... .+.+|..+++
T Consensus        43 w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~  120 (148)
T 2azw_A           43 YFLPGGEIEGTETKEEAIHREVLEELGISVEIGCY-LGEADEYFYSNHRQTAYYNPGYFYVANTWRQLS-EPLERTNTLH  120 (148)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEEEEEEETTTTEEEEEEEEEEEEEEEEECS-SCC-CCSEEE
T ss_pred             EeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeE-EEEEEEEEcCCCCCcceEEEEEEEEEEcCcCCc-CCCCceeeEE
Confidence            89999999999999999999999999999988776 77653 2222222   12345667776554332 2335667899


Q ss_pred             EEeHHHHHHhcCchhHHHHHHHHHH
Q 033333           77 WMSVAEARKVCQHWWMKEALDRLVM  101 (121)
Q Consensus        77 W~~~~~l~~~~~~~~~~~~~~~~~~  101 (121)
                      |++++++.++...+..+.++..+.+
T Consensus       121 W~~~~el~~~~~~~~~~~~l~~~~~  145 (148)
T 2azw_A          121 WVAPEEAVRLLKRGSHRWAVEKWLA  145 (148)
T ss_dssp             EECHHHHHHHBSCHHHHHHHHHHHH
T ss_pred             EeeHHHHHhhhcchhHHHHHHHHHH
Confidence            9999999999988888888877663

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.81  E-value=5.7e-19  Score=113.02  Aligned_cols=88  Identities=17%  Similarity=0.071  Sum_probs=69.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc-ccc-ccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL-AEW-PEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~-~~~e~~~~~W~   78 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+..... .....++|.+...... ... ..+|..+++|+
T Consensus        45 w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-l~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~  122 (159)
T 1sjy_A           45 WHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF-LGAYLGRFPDG-VLILRHVWLAEPEPGQTLAPAFTDEIAEASFV  122 (159)
T ss_dssp             EECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEE-EEEEEEECTTS-CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEE
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHHCccceeeEE-EEEEecccCCC-ceEEEEEEEEEccCCCccccCCCCceeEEEEe
Confidence            89999999999999999999999999999988777 88776543332 4456778888765544 322 34677889999


Q ss_pred             eHHHHHHhcCch
Q 033333           79 SVAEARKVCQHW   90 (121)
Q Consensus        79 ~~~~l~~~~~~~   90 (121)
                      +++++.+++...
T Consensus       123 ~~~el~~~~~~~  134 (159)
T 1sjy_A          123 SREDFAQLYAAG  134 (159)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             cHHHHHHhhhcc
Confidence            999999986544

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.81  E-value=3.9e-20  Score=123.91  Aligned_cols=105  Identities=13%  Similarity=0.121  Sum_probs=81.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCC---CCeeEEEEEEeEecccccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH---NTDYQGYMFPLLVQDQLAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W   77 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+.....   ......++|.+....... .++.|..+++|
T Consensus        93 w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w  170 (206)
T 3o8s_A           93 WSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRV-VAILDKHKNNPAKSAHRVTKVFILCRLLGGEF-QPNSETVASGF  170 (206)
T ss_dssp             EECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEE-EEEEEHHHHCC-----CEEEEEEEEEEEEECC-CCCSSCSEEEE
T ss_pred             EECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEeccccCCCCCCceEEEEEEEEEecCCee-cCCCCceEEEE
Confidence            89999999999999999999999999999988777 78765322211   223445667776655432 33468889999


Q ss_pred             EeHHHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           78 MSVAEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                      +++++++.+...+.++..+..+++.+.+..
T Consensus       171 ~~~~el~~l~~~~~~~~~l~~~~~~~~~~~  200 (206)
T 3o8s_A          171 FSLDDLPPLYLGKNTAEQLALCLEASRSEH  200 (206)
T ss_dssp             ECTTSCCCBCTTTCCHHHHHHHHHHHHCSS
T ss_pred             EeHHHhhhccCCCchHHHHHHHHHHHHCCC
Confidence            999999999888888999999988777654

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.81  E-value=5.1e-20  Score=120.53  Aligned_cols=99  Identities=16%  Similarity=0.018  Sum_probs=77.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+.+...........++|.+.......  ...+..+.+|+++
T Consensus        52 W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~e~~~~~W~~~  128 (176)
T 3q93_A           52 WNGFGGKVQEGETIEDGARRELQEESGLTVDALHK-VGQIVFEFVGEPELMDVHVFCTDSIQGTP--VESDEMRPCWFQL  128 (176)
T ss_dssp             EECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEE-EEEEEEEETTCSCEEEEEEEEESCEESCC--CCCSSEEEEEEET
T ss_pred             EECceecCCCCCCHHHHHHHHHHHHHCCcceeeEE-EEEEEEEcCCCCcEEEEEEEEEECCCCCc--CCCcceeeEEeeH
Confidence            89999999999999999999999999999987777 88877766544444556777776443322  2345667899999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      +++..+...+..+.++..+++.
T Consensus       129 ~el~~~~~~~~~~~~l~~~~~~  150 (176)
T 3q93_A          129 DQIPFKDMWPDDSYWFPLLLQK  150 (176)
T ss_dssp             TCCCGGGBCTTHHHHHHHHHTT
T ss_pred             HHccccccCcchHHHHHHHHcC
Confidence            9999887778777777777654

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.81  E-value=1.5e-20  Score=127.70  Aligned_cols=103  Identities=16%  Similarity=0.173  Sum_probs=75.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++++||+||++||||+.+....+ ++.+.+.....+...+.++|.+...........+|..+++|+++
T Consensus        44 w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-l~~~~~~~r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~  122 (226)
T 2fb1_A           44 WSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQ-VGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNI  122 (226)
T ss_dssp             EECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEE-EEEECCTTSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEET
T ss_pred             EECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEE-EEEeCCCCcCCCceEEEEEEEEEecCcccccCCccccceEEEEH
Confidence            89999999999999999999999999999988777 88776444333344555677776654432223356778999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhccc
Q 033333           81 AEARKVCQHWWMKEALDRLVMRLTSQ  106 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~~  106 (121)
                      +++.++..+  ...++..+.++++.+
T Consensus       123 ~el~~l~~d--h~~il~~a~~rlr~~  146 (226)
T 2fb1_A          123 NELPALIFD--HPEMVDKAREMMKQK  146 (226)
T ss_dssp             TSCCCBSTT--HHHHHHHHHHHHHHH
T ss_pred             HHhhhccCC--HHHHHHHHHHHHHhh
Confidence            999877554  346666666655543

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.80  E-value=1.7e-19  Score=129.89  Aligned_cols=106  Identities=25%  Similarity=0.242  Sum_probs=78.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCC-----------CeeEEEEEEeEecccc-----
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN-----------TDYQGYMFPLLVQDQL-----   64 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~f~~~~~~~~-----   64 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+.|.....+           .....++|.+......     
T Consensus        51 W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~-l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l  129 (364)
T 3fjy_A           51 WSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPY-LCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHL  129 (364)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEE-EEEEC---------------------CEEEEEEEECCHHHHHTT
T ss_pred             EECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccc-cceEEEeccCCCcccccccccccCceEEEEEEEEecCCcccccc
Confidence            89999999999999999999999999999988777 777655444221           1234567777665432     


Q ss_pred             -----c--ccccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           65 -----A--EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        65 -----~--~~~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                           .  ....+|..+++|++++++.++..++..+.++..+.+++....
T Consensus       130 ~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~~~l~~g~  179 (364)
T 3fjy_A          130 LDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDRVQEGA  179 (364)
T ss_dssp             HHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHHHHHHTTG
T ss_pred             ccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHHHHhccCC
Confidence                 1  112367888999999999999999999999999988876543

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.80  E-value=2.8e-19  Score=114.16  Aligned_cols=98  Identities=18%  Similarity=0.195  Sum_probs=75.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+... .+.....++|.+.......  ...|..+++|+++
T Consensus        38 w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~  113 (155)
T 2b06_A           38 YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL-VGIKNWPLD-TGGRYIVICYKATEFSGTL--QSSEEGEVSWVQK  113 (155)
T ss_dssp             EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEE-EEEEEEECT-TSCEEEEEEEEECEEEECC--CCBTTBEEEEEEG
T ss_pred             EeccceecCCCCCHHHHHHHHHHHHhCccccCCcE-EEEEeeccC-CCceEEEEEEEEEecCCCC--CCCcceeeEEeeH
Confidence            68999999999999999999999999999987776 777666543 2344556677766443321  2256778999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      +++.++...+.++.+++.+...
T Consensus       114 ~el~~~~~~~~~~~~l~~~~~~  135 (155)
T 2b06_A          114 DQIPNLNLAYDMLPLMEMMEAP  135 (155)
T ss_dssp             GGGGGSCBCTTHHHHHHHHHCT
T ss_pred             HHhhhCCCChhHHHHHHHHhCC
Confidence            9999987778888887766643

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.80  E-value=2e-19  Score=115.54  Aligned_cols=102  Identities=18%  Similarity=0.118  Sum_probs=72.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE-----------eee-------CC-CCCeeEEEEEEeEec
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-----------FKS-------RA-HNTDYQGYMFPLLVQ   61 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~-----------~~~-------~~-~~~~~~~~~f~~~~~   61 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.           +..       .. .....+.++|.+...
T Consensus        30 w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~  108 (159)
T 3f6a_A           30 MLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNP-IDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTT  108 (159)
T ss_dssp             EECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCC-CCHHHHHHHHHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECS
T ss_pred             EECCccCccCCCCHHHHHHHHHHHHhCCCceeccc-ccccccccccccccccccCccccccccCCCCceEEEEEEEEEeC
Confidence            89999999999999999999999999999988776 64321           000       00 112245567888766


Q ss_pred             ccccccccCCcceeEEEeHHHHHHhc-CchhHHHHHHHHHHHh
Q 033333           62 DQLAEWPEKNVRSRKWMSVAEARKVC-QHWWMKEALDRLVMRL  103 (121)
Q Consensus        62 ~~~~~~~~~e~~~~~W~~~~~l~~~~-~~~~~~~~~~~~~~~~  103 (121)
                      ........+|..+++|++++++.++. ....++.+.+...+..
T Consensus       109 ~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~  151 (159)
T 3f6a_A          109 SFETSPEIGESKILKWYSKEDLKNAHNIQENILVMATEALDLL  151 (159)
T ss_dssp             CSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHHHHHC
T ss_pred             CCCcCCCCCcccceEEeeHHHHhhCcCCChhHHHHHHHHHHHH
Confidence            55443334688889999999999986 5565555655555443

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.80  E-value=2.6e-19  Score=114.87  Aligned_cols=99  Identities=17%  Similarity=0.064  Sum_probs=73.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecc-eeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.||||++++||++.+||+||++||||+.+....+ .++.+.+..  .+.....++|.+......  ....|..+++|++
T Consensus        58 w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~  133 (158)
T 3hhj_A           58 WEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGY--ETFHLLMPLYFCSHYKGV--AQGREGQNLKWIF  133 (158)
T ss_dssp             CBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEEC--SSCEEEEEEEEESCCBSC--CCCTTSCEEEEEE
T ss_pred             EECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeecc--CCcEEEEEEEEEEECCCc--cCCccccceEEEc
Confidence            89999999999999999999999999999876543 133333332  333445567776654432  2235677899999


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHh
Q 033333           80 VAEARKVCQHWWMKEALDRLVMRL  103 (121)
Q Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~~  103 (121)
                      ++++.++...+.++.++..+.+++
T Consensus       134 ~~el~~~~~~~~~~~il~~~~~~l  157 (158)
T 3hhj_A          134 INDLDKYPMPEADKPLVQVLKNFF  157 (158)
T ss_dssp             GGGGGGSCCCTTTHHHHHHHHHC-
T ss_pred             HHHHhhCCCCcchHHHHHHHHHhc
Confidence            999999888888888888776543

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.80  E-value=4.6e-19  Score=112.47  Aligned_cols=86  Identities=21%  Similarity=0.156  Sum_probs=58.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEe-cccccccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV-QDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+. ... .......++|.+.. .........+|..+++|++
T Consensus        34 w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~~~-~~~-~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~  110 (145)
T 2w4e_A           34 TEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVP-LPGFY-PQP-SISGVVFYPLLALGVTLGAAQLEDTETIERVVLP  110 (145)
T ss_dssp             EECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEE-CCCBB-SCT-TTCCCEEEEEEEEEEEEC--------CEEEEEEE
T ss_pred             EEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEE-EecCc-CCC-CccCceEEEEEEEecccCCCCCCCCCeEEEEEEe
Confidence            89999999999999999999999999999876665 66542 222 22223456666653 2222222346778899999


Q ss_pred             HHHHHHhcCc
Q 033333           80 VAEARKVCQH   89 (121)
Q Consensus        80 ~~~l~~~~~~   89 (121)
                      ++++.+++.+
T Consensus       111 ~~el~~~~~~  120 (145)
T 2w4e_A          111 LAEVYRMLEA  120 (145)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999987543

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.79  E-value=2e-19  Score=113.45  Aligned_cols=101  Identities=17%  Similarity=0.066  Sum_probs=74.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||++||||+.+....+ .......+...+.....++|.+......  ....|..+++|+++
T Consensus        37 w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~  113 (144)
T 3r03_A           37 WEFPGGKLEPGETPEAALVRELAEELGVDTRASCL-APLAFASHSYDTFHLLMPLYACRSWRGR--ATAREGQTLAWVRA  113 (144)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGC-EEEEEEEEECSSSEEEEEEEEECCCBSC--CCCCSSCEEEEECG
T ss_pred             EECCCcEecCCCCHHHHHHHHHHHHhCceeeccce-EEEEeeeccCCCeEEEEEEEEEEecCCc--cCCCCcceEEEEeH
Confidence            89999999999999999999999999999877643 3332222223334455677777655432  22356778999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhc
Q 033333           81 AEARKVCQHWWMKEALDRLVMRLT  104 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~  104 (121)
                      +++.++...+.++.+++.+.+...
T Consensus       114 ~el~~~~~~~~~~~~l~~~~~~~~  137 (144)
T 3r03_A          114 ERLREYPMPPADLPLIPILQDWLE  137 (144)
T ss_dssp             GGGGGSCCCTTTTTHHHHHHHHC-
T ss_pred             HHhccCCCCcchHHHHHHHhCccc
Confidence            999999888888888887666543

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.79  E-value=1.1e-18  Score=114.08  Aligned_cols=102  Identities=25%  Similarity=0.310  Sum_probs=73.2

Q ss_pred             Ccc-CCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~l-PgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.| |||++++||++.+||+||++||||+.+..... ++.+.+...  ......++|.+.... ......+|..+++|++
T Consensus        67 w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~--~~~~~~~~f~~~~~~-~~~~~~~E~~~~~W~~  142 (180)
T 2fkb_A           67 LDATAGGVVQADEQLLESARREAEEELGIAGVPFAE-HGQFYFEDK--NCRVWGALFSCVSHG-PFALQEDEVSEVCWLT  142 (180)
T ss_dssp             EESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEE-EEEEEEEET--TEEEEEEEEEEECCC-CCCCCTTTEEEEEEEC
T ss_pred             EEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEE-EEEEEecCC--CceEEEEEEEEecCC-CcCCChhHhheEEEec
Confidence            788 99999999999999999999999998776666 777655433  234456777776332 2222346778899999


Q ss_pred             HHHHHHhc--CchhHHHHHHHHHHHhccc
Q 033333           80 VAEARKVC--QHWWMKEALDRLVMRLTSQ  106 (121)
Q Consensus        80 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~  106 (121)
                      ++++.+++  ..+..+.++..++......
T Consensus       143 ~~el~~~~~~~~~~~~~~l~~~~~~~~~~  171 (180)
T 2fkb_A          143 PEEITARCDEFTPDSLKALALWMKRNAKN  171 (180)
T ss_dssp             HHHHHTTGGGBCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHhhcCC
Confidence            99999973  3566677777766654443

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.79  E-value=1.6e-19  Score=115.76  Aligned_cols=97  Identities=16%  Similarity=0.131  Sum_probs=69.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEe-----------------eeCCCCCeeEEEEEEeEeccc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF-----------------KSRAHNTDYQGYMFPLLVQDQ   63 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~-----------------~~~~~~~~~~~~~f~~~~~~~   63 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+                 ..+.........+|.+...  
T Consensus        25 W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--  101 (156)
T 1k2e_A           25 YIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF-TYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRV--  101 (156)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCC-CCCCBSSSEEECCCCSEEEEEEEECSSCEEEEEEEEEEEEEE--
T ss_pred             EECCeeecCCCCCHHHHHHHHHHHHHCCcceeccc-eeeecccccccccccceeeeeeecCCCCceEEEEEEEEEEec--
Confidence            89999999999999999999999999999887665 442211                 1111111123344555532  


Q ss_pred             ccccccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHhcc
Q 033333           64 LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  105 (121)
Q Consensus        64 ~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~  105 (121)
                           ..+..+++|++++++.++...+..+.++..+.+.+..
T Consensus       102 -----~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  138 (156)
T 1k2e_A          102 -----GGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTLYR  138 (156)
T ss_dssp             -----EECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHHH
T ss_pred             -----CCcEeeeEEeCHHHHhcCCCChHHHHHHHHHHHHHHh
Confidence                 2346679999999999887778888888888776554

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.79  E-value=1.5e-19  Score=117.31  Aligned_cols=99  Identities=15%  Similarity=0.089  Sum_probs=71.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc-----ccCCccee
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW-----PEKNVRSR   75 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-----~~~e~~~~   75 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+....  .....++|.+.........     ..+|..++
T Consensus        48 w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~  124 (171)
T 3id9_A           48 WSLPGGRVENGETLEEAMIREMREETGLEVKIKKL-LYVCDKPDAS--PSLLHITFLLERIEGEITLPSNEFDHNPIHDV  124 (171)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EEEEEETTSS--SCEEEEEEEEEEC-------------CCCCCE
T ss_pred             EECCCccCCCCCCHHHHHHHHHHHHHCCccccceE-EEEEcccCCC--CcEEEEEEEEEEcCCcccCCccCCCcCeeeeE
Confidence            89999999999999999999999999999987776 7776554332  2234455666554433222     22567789


Q ss_pred             EEEeHHHHHHhcCchhHHHHHHHHHHH
Q 033333           76 KWMSVAEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        76 ~W~~~~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      +|++++++.++...+.++.++...+..
T Consensus       125 ~w~~~~el~~~~~~~~~~~~l~~~~~~  151 (171)
T 3id9_A          125 QMVPINELSYYGFSETFINLISGGLAN  151 (171)
T ss_dssp             EEEETGGGGGGTCCTTCSHHHHHGGGG
T ss_pred             EEEeHHHHhhCCCCHHHHHHHHHhhcc
Confidence            999999999998778777777766443

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.79  E-value=6.2e-19  Score=110.58  Aligned_cols=97  Identities=19%  Similarity=0.080  Sum_probs=75.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+.+..+.  .....++|.+......  ....|..+++|+++
T Consensus        37 w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~  111 (140)
T 2rrk_A           37 WEFAGGKVEPDESQRQALVRELREELGIEATVGEY-VASHQREVSG--RIIHLHAWHVPDFHGT--LQAHEHQALVWCSP  111 (140)
T ss_dssp             EECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEE-EEEEEEEETT--EEEEEEEEEESEEEEC--CCCSSCSCEEEECH
T ss_pred             EECCceecCCCCCHHHHHHHHHHHHHCCeeecccE-EEEEEEecCC--cEEEEEEEEEEeeCCC--cCCCccceeEEeCH
Confidence            89999999999999999999999999999987776 7776655442  2344566766544332  12346678999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      +++.++...+.++.++..+.+.
T Consensus       112 ~el~~~~~~~~~~~~l~~~~~~  133 (140)
T 2rrk_A          112 EEALQYPLAPADIPLLEAFMAL  133 (140)
T ss_dssp             HHHTTSCCCTTHHHHHHHHHHH
T ss_pred             HHHhhCCCChhHHHHHHHHHHH
Confidence            9999988888888888887754

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.79  E-value=3.8e-19  Score=113.94  Aligned_cols=98  Identities=18%  Similarity=0.209  Sum_probs=70.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceee--eecceeeeeEeeeCCC------CCeeEEEEEEeEecccccccccCCc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI--VECELLGEWNFKSRAH------NTDYQGYMFPLLVQDQLAEWPEKNV   72 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~--~~~~~l~~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~e~   72 (121)
                      |.||||++++||++.+||+||++||||+.+.  .... ++.+.+.....      ..+...++|.+...........+|.
T Consensus        46 w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~  124 (160)
T 1rya_A           46 WFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF-YGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQH  124 (160)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEE-EEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSE
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceE-EEEEeEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCcc
Confidence            8999999999999999999999999999964  3444 66665543321      1245567777776544332334677


Q ss_pred             ceeEEEeHHHHHHhc-CchhHHHHHHHH
Q 033333           73 RSRKWMSVAEARKVC-QHWWMKEALDRL   99 (121)
Q Consensus        73 ~~~~W~~~~~l~~~~-~~~~~~~~~~~~   99 (121)
                      .+++|++++++.++. ..+..+.+++..
T Consensus       125 ~~~~W~~~~el~~~~~~~~~~~~~l~~~  152 (160)
T 1rya_A          125 DDYRWLTSDALLASDNVHANSRAYFLAE  152 (160)
T ss_dssp             EEEEEECHHHHHHCTTBCHHHHGGGCHH
T ss_pred             ceEEEecHHHHhhccccCHHHHHHHHHH
Confidence            889999999999873 456555555543

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.79  E-value=5.2e-19  Score=112.36  Aligned_cols=99  Identities=19%  Similarity=0.117  Sum_probs=78.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||+.||||+.+..... ++.+.+....  .....++|.+......  ....|..+++|+++
T Consensus        50 w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~  124 (153)
T 3ees_A           50 WEFPGGKIENGETPEEALARELNEELGIEAEVGEL-KLACTHSYGD--VGILILFYEILYWKGE--PRAKHHMMLEWIHP  124 (153)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCE-EEEEEEEETT--EEEEEEEEEECEEESC--CCCSSSSEEEEECG
T ss_pred             EECCceeeCCCCCHHHHHHHHHHHHHCCccccCce-EEEEEEecCC--CeEEEEEEEEEECCCC--cCCCccceEEEecH
Confidence            89999999999999999999999999999988777 7776655442  3334566776654432  22356778999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhc
Q 033333           81 AEARKVCQHWWMKEALDRLVMRLT  104 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~  104 (121)
                      +++.++...+..+.++..+.+.+.
T Consensus       125 ~el~~~~~~~~~~~~l~~~~~~~~  148 (153)
T 3ees_A          125 EELKHRNIPEANRKILHKIYKALG  148 (153)
T ss_dssp             GGGGGSCCCHHHHTTHHHHHHHTT
T ss_pred             HHhhhCCCCcchHHHHHHHHHhhc
Confidence            999998888888888888877654

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.79  E-value=1.7e-19  Score=119.29  Aligned_cols=100  Identities=18%  Similarity=0.119  Sum_probs=75.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCe---eEEEEEEeEecccccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD---YQGYMFPLLVQDQLAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~~~~e~~~~~W   77 (121)
                      |.||||++++||++.+||+||++||||+.+....+ ++.+.+........   ...++|.+....... .+..+..+++|
T Consensus        28 W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~-~~~~e~~~~~W  105 (188)
T 3fk9_A           28 WVAPGGKMEAGESILETVKREYWEETGITVKNPEL-KGIFSMVIFDEGKIVSEWMLFTFKATEHEGEM-LKQSPEGKLEW  105 (188)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEE-EEEEEEEEEETTEEEEEEEEEEEEESCEESCC-CSEETTEEEEE
T ss_pred             EECCeecccCCCCHHHHHHHHHHHHHCCCCCCceE-EEEEEEEecCCCcceEEEEEEEEEEECCCCCC-cCCCCCEeEEE
Confidence            89999999999999999999999999999887776 78777655433321   245666665443332 23345568999


Q ss_pred             EeHHHHHHhcCchhHHHHHHHHHHH
Q 033333           78 MSVAEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      ++++++..+...+..+.++..+.+.
T Consensus       106 ~~~~el~~~~l~~~~~~~l~~~l~~  130 (188)
T 3fk9_A          106 KKKDEVLELPMAAGDKWIFKHVLHS  130 (188)
T ss_dssp             EEGGGGGGSCCCHHHHHHHHHHTTC
T ss_pred             EEHHHhhhCCCCHHHHHHHHHHHcC
Confidence            9999999887778888888777654

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.78  E-value=5.2e-19  Score=114.14  Aligned_cols=96  Identities=18%  Similarity=0.083  Sum_probs=65.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeee------EeeeCCCCCe---eEEEEEEeEecccccccccCC
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW------NFKSRAHNTD---YQGYMFPLLVQDQLAEWPEKN   71 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~------~~~~~~~~~~---~~~~~f~~~~~~~~~~~~~~e   71 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++..      .+........   ....+|.+....... .+.+|
T Consensus        57 w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E  134 (165)
T 3oga_A           57 WALSGGGVEPGERIEEALRREIREELGEQLILSDI-TPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDI-CINDE  134 (165)
T ss_dssp             EECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEE-EEEEEEEEEEEEEC--CCEEEEEEEEEEEEEEESCCCC-CCCTT
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHhCCCccccce-eeeeeecceeeEecCCCCceeEEEEEEEEEeeccCCCc-cCCch
Confidence            89999999999999999999999999999876554 4321      1222222211   122344444433322 23367


Q ss_pred             cceeEEEeHHHHHHhcCchhHHHHHHH
Q 033333           72 VRSRKWMSVAEARKVCQHWWMKEALDR   98 (121)
Q Consensus        72 ~~~~~W~~~~~l~~~~~~~~~~~~~~~   98 (121)
                      ..+++|++++++.++...+..+.+++.
T Consensus       135 ~~~~~W~~~~el~~~~~~~~~~~~l~~  161 (165)
T 3oga_A          135 FQDYAWVKPEELALYDLNVATRHTLAL  161 (165)
T ss_dssp             EEEEEEECGGGGGGSCBCHHHHHHHHH
T ss_pred             heeeEEccHHHHhhCCCCHHHHHHHHH
Confidence            788999999999998777877777664

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.78  E-value=2.2e-18  Score=114.65  Aligned_cols=98  Identities=17%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE-eeeCCCCCeeEEEEEEeEeccc--ccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-FKSRAHNTDYQGYMFPLLVQDQ--LAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~-~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W   77 (121)
                      |.||||++++||++++||+||++||||+.+....+ ++... +..+ ........+|.+.....  ......+|..+++|
T Consensus        54 w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W  131 (199)
T 3h95_A           54 WKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSV-LSIRQQHTNP-GAFGKSDMYIICRLKPYSFTINFCQEECLRCEW  131 (199)
T ss_dssp             BBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EEEEECC----------CEEEEEEEEESCCCCCCCTTTEEEEEE
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHhCCccccceE-EEEEeeecCC-CCceeEEEEEEEEEcCCCcccCCCccceeeeEE
Confidence            89999999999999999999999999999887666 66422 2222 11112223444443322  22223467888999


Q ss_pred             EeHHHHHHhcCchhHH-HHHHHHH
Q 033333           78 MSVAEARKVCQHWWMK-EALDRLV  100 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~-~~~~~~~  100 (121)
                      ++++++.++.....+. .++..+.
T Consensus       132 ~~~~el~~~~~~~~~~~~~~~~~~  155 (199)
T 3h95_A          132 MDLNDLAKTENTTPITSRVARLLL  155 (199)
T ss_dssp             EEHHHHHHCSSBCHHHHHHHHHHH
T ss_pred             EeHHHHhhhhhcChHHHHHHHHHH
Confidence            9999999976544333 3333333

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.77  E-value=4.7e-19  Score=118.04  Aligned_cols=89  Identities=18%  Similarity=-0.001  Sum_probs=66.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc-ccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~   79 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+.+. . .......++|.+......... ..+|..+++|++
T Consensus        77 welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~-l~~~~~~-~-~~~~~~~~~f~a~~~~~~~~~~~~~E~~~~~w~~  153 (198)
T 1vhz_A           77 LGFSKGLIDPGESVYEAANRELKEEVGFGANDLTF-LKKLSMA-P-SYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWP  153 (198)
T ss_dssp             EECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEECC-T-TTCCCEEEEEEEEEEEECCCCCCCSSCCCEEEEE
T ss_pred             EEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEE-EEEEeCC-C-CccCcEEEEEEEEeCCcccCCCCCCceEEEEEEE
Confidence            89999999999999999999999999999987776 7776432 2 222234566776654332222 236777899999


Q ss_pred             HHHHHHhcCchhH
Q 033333           80 VAEARKVCQHWWM   92 (121)
Q Consensus        80 ~~~l~~~~~~~~~   92 (121)
                      ++++.+++.++.+
T Consensus       154 ~~el~~~~~~~~i  166 (198)
T 1vhz_A          154 LAHMMDLLEDPDF  166 (198)
T ss_dssp             GGGGGGGGGCTTT
T ss_pred             HHHHHHHHHcCCC
Confidence            9999998765543

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.77  E-value=1.8e-18  Score=114.30  Aligned_cols=99  Identities=17%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++++||+||++||||+.+....+ ++.+.+..    .....++|.+....... .+.+|..+++|+++
T Consensus        67 w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~----~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~~  140 (189)
T 3cng_A           67 WTLPAGFMENNETLVQGAARETLEEANARVEIREL-YAVYSLPH----ISQVYMLFRAKLLDLDF-FPGIESLEVRLFGE  140 (189)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EEEEEEGG----GTEEEEEEEEEECCSCC-CCCTTEEEEEEECT
T ss_pred             EECceeeccCCCCHHHHHHHHHHHHHCCcccccee-EEEEecCC----CcEEEEEEEEEeCCCcc-CCCccceeEEEECH
Confidence            89999999999999999999999999999887765 66654422    23456778877655432 33567788999999


Q ss_pred             HHHH-HhcCchhHHHHHHHHHHHhcc
Q 033333           81 AEAR-KVCQHWWMKEALDRLVMRLTS  105 (121)
Q Consensus        81 ~~l~-~~~~~~~~~~~~~~~~~~~~~  105 (121)
                      +++. ..+..+..+.++..+++....
T Consensus       141 ~el~~~~l~~~~~~~~l~~~l~~~~~  166 (189)
T 3cng_A          141 QEIPWNDIAFRVIHDPLKRYMEERHH  166 (189)
T ss_dssp             TTCCGGGBSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCcccccChHHHHHHHHHHHhccC
Confidence            9998 345567777777777765443

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.77  E-value=7.9e-19  Score=112.05  Aligned_cols=89  Identities=12%  Similarity=0.143  Sum_probs=65.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCC--eeEEEEEEeEecccccc--cccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT--DYQGYMFPLLVQDQLAE--WPEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~--~~~~e~~~~~   76 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+.....+.  ....++|.+........  ...++..+++
T Consensus        41 w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~  119 (154)
T 2pqv_A           41 YYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQL-AFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCE  119 (154)
T ss_dssp             EECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEE-EEEEEEEEEETTEEEEEEEEEEEEEESSCCCSEEEETTEEEEEE
T ss_pred             EECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceE-EEEEeeeecCCCCcceEEEEEEEEEecCCCCcccCCCCceeeEE
Confidence            89999999999999999999999999999987776 6665543332222  23456777776544322  1234567899


Q ss_pred             EEeHHHHHHhcCch
Q 033333           77 WMSVAEARKVCQHW   90 (121)
Q Consensus        77 W~~~~~l~~~~~~~   90 (121)
                      |++++++..+...+
T Consensus       120 W~~~~el~~~~~~~  133 (154)
T 2pqv_A          120 WIDLDKLQNIQLVP  133 (154)
T ss_dssp             EEEGGGGGGSCEES
T ss_pred             EeEHHHHhhcCcCc
Confidence            99999999875444

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.76  E-value=2e-18  Score=111.87  Aligned_cols=94  Identities=17%  Similarity=0.068  Sum_probs=68.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+..      ...++|.+.....  ..+.+|..+++|++ 
T Consensus        39 w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~------~~~~~f~~~~~~~--~~~~~E~~~~~W~~-  108 (163)
T 3f13_A           39 YNLPGGKANRGELRSQALIREIREETGLRINSMLY-LFDHITPF------NAHKVYLCIAQGQ--PKPQNEIERIALVS-  108 (163)
T ss_dssp             BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEE-EEEEECSS------EEEEEEEEEC-CC--CCCCTTCCEEEEES-
T ss_pred             EECCceeCCCCCCHHHHHHHHHHHHHCcccceeEE-EEEEecCC------eEEEEEEEEECCc--CccCCCceEEEEEC-
Confidence            89999999999999999999999999999988776 76654321      3456677765432  23335778899999 


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhc
Q 033333           81 AEARKVCQHWWMKEALDRLVMRLT  104 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~  104 (121)
                      .+...+...+..+.++..+.+...
T Consensus       109 ~~~~~~~l~~~~~~il~~~~~~~~  132 (163)
T 3f13_A          109 SPDTDMDLFVEGRAILRRYARLRN  132 (163)
T ss_dssp             STTCSSCBCHHHHHHHHHHHHHTT
T ss_pred             cccccCCCCHHHHHHHHHHHHhhh
Confidence            444444555777778887776544

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.76  E-value=5.2e-19  Score=116.78  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=69.9

Q ss_pred             Ccc-CCcccCCCCCHHHHHHHHHHHHhCceeeee-cceeeeeEeeeCCC-C--CeeEEEEEEeEecccccccccCCccee
Q 033333            1 MLF-PKGGWEIDESIQEAALRETIEEAGVTGIVE-CELLGEWNFKSRAH-N--TDYQGYMFPLLVQDQLAEWPEKNVRSR   75 (121)
Q Consensus         1 W~l-PgG~ve~gE~~~eaa~REl~EEtG~~~~~~-~~~l~~~~~~~~~~-~--~~~~~~~f~~~~~~~~~~~~~~e~~~~   75 (121)
                      |.| |||++++||++++||+||++||||+.+... .. ++.+.+..... +  .....++|.+...... ....+|..++
T Consensus        62 w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~E~~~~  139 (190)
T 1hzt_A           62 WTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESI-YPDFRYRATDPSGIVENEVCPVFAARTTSAL-QINDDEVMDY  139 (190)
T ss_dssp             EEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEE-ETTCEEEEECTTSCEEEEECCEEEEEBCSCC-CCCTTTEEEE
T ss_pred             ccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhhee-eeeEEEEeeCCCCCcceEEEEEEEEecCCCC-cCCccceeeE
Confidence            789 999999999999999999999999998776 55 67666543222 1  1334567777754422 2234677889


Q ss_pred             EEEeHHHHHHhcC------chhHHHHHHHHHH
Q 033333           76 KWMSVAEARKVCQ------HWWMKEALDRLVM  101 (121)
Q Consensus        76 ~W~~~~~l~~~~~------~~~~~~~~~~~~~  101 (121)
                      +|++++++.+++.      .+.++.++..+..
T Consensus       140 ~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~  171 (190)
T 1hzt_A          140 QWCDLADVLHGIDATPWAFSPWMVMQATNREA  171 (190)
T ss_dssp             EEECHHHHHHHHHHCGGGBCHHHHHHHHSHHH
T ss_pred             EEecHHHHHHHHHcChhhcCchHHHHHHHHHH
Confidence            9999999998742      3445555555443

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.76  E-value=1.8e-18  Score=120.16  Aligned_cols=100  Identities=13%  Similarity=0.050  Sum_probs=74.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++|+|||+++||+||++||||+.+..... ++.+.+..+    ....++|.+...........+|..+++|+++
T Consensus       166 w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~-~~~~~~~~~----~~~~~~f~a~~~~~~~~~~~~E~~~~~W~~~  240 (269)
T 1vk6_A          166 HTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY-VTSQPWPFP----QSLMTAFMAEYDSGDIVIDPKELLEANWYRY  240 (269)
T ss_dssp             CBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEETT----EEEEEEEEEEEEECCCCCCTTTEEEEEEEET
T ss_pred             EECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEE-EEEEecCCC----CEEEEEEEEEECCCCcCCCCcceEEEEEEEH
Confidence            89999999999999999999999999999988777 777654332    2355677777655433333467888999999


Q ss_pred             HHHHHhcCchhHH-HHHHHHHHHhcc
Q 033333           81 AEARKVCQHWWMK-EALDRLVMRLTS  105 (121)
Q Consensus        81 ~~l~~~~~~~~~~-~~~~~~~~~~~~  105 (121)
                      +++..+.....+. .++..++.++++
T Consensus       241 ~el~~l~~~~si~~~li~~~l~~~r~  266 (269)
T 1vk6_A          241 DDLPLLPPPGTVARRLIEDTVAMCRA  266 (269)
T ss_dssp             TSCCSCCCTTSHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccCcHHHHHHHHHHHHHHHh
Confidence            9998876655443 566666666553

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.76  E-value=1.2e-17  Score=108.45  Aligned_cols=87  Identities=24%  Similarity=0.133  Sum_probs=60.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc-ccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~   79 (121)
                      |.||||++++||++++||+||++||||+ +..... ++.+.+. . .......++|.+......... ..+|..+++|++
T Consensus        62 w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~-l~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~  137 (170)
T 1v8y_A           62 LEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTY-LFSYFVS-P-GFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMR  137 (170)
T ss_dssp             BBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEE-EEEEESC-T-TTBCCEEEEEEEEEEEECC--------CEEEEEC
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHHCC-CcCcee-eEEEecC-C-CccccEEEEEEEEeccccCCCCCCCceEEEEEEE
Confidence            8999999999999999999999999999 877766 7765322 2 222345567776654322222 236778899999


Q ss_pred             HHHHHHhcCchh
Q 033333           80 VAEARKVCQHWW   91 (121)
Q Consensus        80 ~~~l~~~~~~~~   91 (121)
                      ++++.+++..+.
T Consensus       138 ~~el~~~~~~~~  149 (170)
T 1v8y_A          138 PEEALERHQRGE  149 (170)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCC
Confidence            999999864443

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.75  E-value=4.4e-18  Score=109.26  Aligned_cols=104  Identities=16%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeee-eEeeeCC------------CCCeeEEEEEEeEeccccc--
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE-WNFKSRA------------HNTDYQGYMFPLLVQDQLA--   65 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~-~~~~~~~------------~~~~~~~~~f~~~~~~~~~--   65 (121)
                      |.+|||++++||++++||+||++||||+.+......... +.+....            .......++|++.......  
T Consensus        40 w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  119 (165)
T 1f3y_A           40 WQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEI  119 (165)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGC
T ss_pred             EECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccccccccccccccccCceEEEEEEEecCCcccc
Confidence            899999999999999999999999999987532210110 1111110            0001134567766554321  


Q ss_pred             cc-----ccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHhcc
Q 033333           66 EW-----PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  105 (121)
Q Consensus        66 ~~-----~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~  105 (121)
                      ..     ..+|..+++|++++++.++.... ....++.+.+.+.+
T Consensus       120 ~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~~~~~l~~  163 (165)
T 1f3y_A          120 NLLGDGSEKPEFGEWSWVTPEQLIDLTVEF-KKPVYKEVLSVFAP  163 (165)
T ss_dssp             CCCCCSSSCCSEEEEEEECHHHHHHHBCGG-GHHHHHHHHHHHGG
T ss_pred             cccCCCCCCChhheeEEecHHHHHHHhhhh-hHHHHHHHHHHhhh
Confidence            11     23577889999999999987542 45666666666654

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.4e-18  Score=108.85  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEe-ccc--ccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV-QDQ--LAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~--~~~~~~~e~~~~~W   77 (121)
                      |.||||++++||++.+||+||++||||+.+..... +..+..... .+.  ..++|.+.. ...  ......+|..+++|
T Consensus        30 w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~W  105 (146)
T 2jvb_A           30 WSFPRGKISKDENDIDCCIREVKEEIGFDLTDYID-DNQFIERNI-QGK--NYKIFLISGVSEVFNFKPQVRNEIDKIEW  105 (146)
T ss_dssp             CBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSC-SSCEEEEEE-TTE--EEEEEEECCCCSSSCCCCCCSSSCCCEEE
T ss_pred             EECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcc-ccccccccc-CCc--eEEEEEEEeccccccCCcCCcchhheeEE
Confidence            89999999999999999999999999999865433 333322211 222  223444332 221  11122467788999


Q ss_pred             EeHHHHHHhcCch
Q 033333           78 MSVAEARKVCQHW   90 (121)
Q Consensus        78 ~~~~~l~~~~~~~   90 (121)
                      ++++++.+++...
T Consensus       106 ~~~~el~~~~~~~  118 (146)
T 2jvb_A          106 FDFKKISKTMYKS  118 (146)
T ss_dssp             EEHHHHHTGGGCS
T ss_pred             eEHHHHHhhhccc
Confidence            9999999976543

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.74  E-value=5.7e-18  Score=120.98  Aligned_cols=104  Identities=18%  Similarity=0.153  Sum_probs=74.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceee----eeEeeeCCC--CCeeEEEEEEeEecccc--cc-cccCC
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG----EWNFKSRAH--NTDYQGYMFPLLVQDQL--AE-WPEKN   71 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~----~~~~~~~~~--~~~~~~~~f~~~~~~~~--~~-~~~~e   71 (121)
                      |.||||++++||++++||+||++||||+.+....+ ++    ...+..+..  ..+...++|.+......  .. ...+|
T Consensus       235 w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E  313 (352)
T 2qjt_B          235 WALPGGFLECDETIAQAIIRELFEETNINLTHEQL-AIAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADD  313 (352)
T ss_dssp             EECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHH-HHHEEEEEEECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTT
T ss_pred             EECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchh-cceeeeeEEecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCcc
Confidence            89999999999999999999999999999875433 22    122222221  22334566666655433  11 22467


Q ss_pred             cceeEEEeH-HHHHHh--cCchhHHHHHHHHHHHhcc
Q 033333           72 VRSRKWMSV-AEARKV--CQHWWMKEALDRLVMRLTS  105 (121)
Q Consensus        72 ~~~~~W~~~-~~l~~~--~~~~~~~~~~~~~~~~~~~  105 (121)
                      ..+++|+++ +++.++  ...+..+.++..+.+++.+
T Consensus       314 ~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~~l~~  350 (352)
T 2qjt_B          314 AKDVKWISLGSNIKNICDRMLEDHYQIITILLEECGK  350 (352)
T ss_dssp             EEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHHHTC-
T ss_pred             ceEEEEecHHHHHHhhhhhhChhHHHHHHHHHHHhcc
Confidence            888999999 999997  5678888999999888743

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.74  E-value=9e-18  Score=108.88  Aligned_cols=100  Identities=13%  Similarity=0.078  Sum_probs=67.1

Q ss_pred             Cc-cCCcccCCCCCHHHHHHHHHHHHhCceeeeecc-eeeeeE-eeeCCCCCeeEEEEEEeEecccccccccCCcceeEE
Q 033333            1 ML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWN-FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~-lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W   77 (121)
                      |. ||||++++||++.+||+||++||||+.+..... .++.+. +...  .. ...++|.+... ........|..+++|
T Consensus        64 w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~--~~-~~~~~f~~~~~-~~~~~~~~E~~~~~W  139 (171)
T 1q27_A           64 LDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTT--LS-SFMCVYELRSD-ATPIFNPNDISGGEW  139 (171)
T ss_dssp             CCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSC--CS-SEEEEEEEECC-CCCCSCTTTCSCCEE
T ss_pred             cccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCC--Cc-cEEEEEEEEEC-CccccCchhhheEEE
Confidence            87 999999999999999999999999999876431 144443 2222  22 25677777762 222222367778999


Q ss_pred             EeHHHHHHhcC--chhHHHHHHHHHHHhc
Q 033333           78 MSVAEARKVCQ--HWWMKEALDRLVMRLT  104 (121)
Q Consensus        78 ~~~~~l~~~~~--~~~~~~~~~~~~~~~~  104 (121)
                      ++++++.++..  ......++..+.+.+.
T Consensus       140 ~~~~el~~~~~~~~~~~~~~~~~l~~~~~  168 (171)
T 1q27_A          140 LTPEHLLARIAAGEAAKGDLAELVRRCYR  168 (171)
T ss_dssp             ECHHHHHHHHHHHSSCCHHHHHHHHHHHT
T ss_pred             ecHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence            99999996532  2334456665555443

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.74  E-value=4e-18  Score=114.40  Aligned_cols=84  Identities=18%  Similarity=0.007  Sum_probs=63.2

Q ss_pred             Ccc-CCcccCCCCC--H----HHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcc
Q 033333            1 MLF-PKGGWEIDES--I----QEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVR   73 (121)
Q Consensus         1 W~l-PgG~ve~gE~--~----~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~   73 (121)
                      |.+ |||+|++||+  +    ++||+||++||||+++....+ ++.+.+.....+..++.++|.+......  ...++..
T Consensus        99 w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~-ig~~~~~~~~~~~~~l~~~f~~~~~~g~--~~~~E~~  175 (211)
T 3e57_A           99 YSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEF-LGLINSSTTEVSRVHLGALFLGRGKFFS--VKEKDLF  175 (211)
T ss_dssp             CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEE-EEEEECCSSHHHHTEEEEEEEEEEEEEE--ESCTTTC
T ss_pred             cccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEE-EEEEeccCCCCCeEEEEEEEEEEeCCce--eCCCCeE
Confidence            777 9999999998  4    999999999999999988877 8887653221122344567777755322  2345677


Q ss_pred             eeEEEeHHHHHHhc
Q 033333           74 SRKWMSVAEARKVC   87 (121)
Q Consensus        74 ~~~W~~~~~l~~~~   87 (121)
                      +++|++++++.++.
T Consensus       176 ~~~W~~~~eL~~~~  189 (211)
T 3e57_A          176 EWELIKLEELEKFS  189 (211)
T ss_dssp             EEEEEEHHHHHHHG
T ss_pred             EEEEEEHHHHHHhH
Confidence            89999999999984

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.74  E-value=2.7e-18  Score=114.07  Aligned_cols=83  Identities=34%  Similarity=0.599  Sum_probs=60.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccccc--CCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPE--KNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~--~e~~~~~W~   78 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+.+.  .. . ...++|.+...........  .+..+++|+
T Consensus        68 W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~-l~~~~~~--~~-~-~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~  142 (194)
T 2fvv_A           68 WIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRL-VGIFENQ--ER-K-HRTYVYVLIVTEVLEDWEDSVNIGRKREWF  142 (194)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEE-EEEEEET--TT-T-EEEEEEEEEEEEECSSCHHHHHHCCCEEEE
T ss_pred             EECCCCcCCCCcCHHHHHHHHHHHHhCCccccceE-EEEEEcC--CC-c-eEEEEEEEEEccccCCCCCcccccceEEEE
Confidence            89999999999999999999999999999988777 8877642  12 1 2345666654432211111  123578999


Q ss_pred             eHHHHHHhcC
Q 033333           79 SVAEARKVCQ   88 (121)
Q Consensus        79 ~~~~l~~~~~   88 (121)
                      +++++.+++.
T Consensus       143 ~~~el~~~l~  152 (194)
T 2fvv_A          143 KIEDAIKVLQ  152 (194)
T ss_dssp             EHHHHHHHHT
T ss_pred             EHHHHHHHHh
Confidence            9999998754

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.74  E-value=1.4e-18  Score=113.83  Aligned_cols=87  Identities=18%  Similarity=0.092  Sum_probs=63.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecc--cccccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~   78 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+.+.  ........++|.+....  .......+|..+++|+
T Consensus        70 w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~  146 (182)
T 2yvp_A           70 LEVPAGKVDEGETPEAAARRELREEVGAEAETLIP-LPSFHPQ--PSFTAVVFHPFLALKARVVTPPTLEEGELLESLEL  146 (182)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEE-CCCBCSC--TTTBCCEEEEEEECSCEECSCCCCCTTCCEEEEEE
T ss_pred             EEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEE-EEEEeCC--CCccccEEEEEEEeccccCCCCCCCCCceEEEEEE
Confidence            89999999999999999999999999999877666 6665321  12223455677765332  1222234677889999


Q ss_pred             eHHHHHHhcCch
Q 033333           79 SVAEARKVCQHW   90 (121)
Q Consensus        79 ~~~~l~~~~~~~   90 (121)
                      +++++.+++.++
T Consensus       147 ~~~el~~~~~~~  158 (182)
T 2yvp_A          147 PLTEVYALLAKG  158 (182)
T ss_dssp             EHHHHHHHHHTT
T ss_pred             EHHHHHHHHHcC
Confidence            999999986544

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.74  E-value=3.4e-18  Score=121.51  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=66.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceee----eeEeeeCCC--CCeeEEEEEEeEeccccc-c-cccCCc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG----EWNFKSRAH--NTDYQGYMFPLLVQDQLA-E-WPEKNV   72 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~----~~~~~~~~~--~~~~~~~~f~~~~~~~~~-~-~~~~e~   72 (121)
                      |.||||++++||++++||+||++||||+.+..... ++    ...+..+..  ..+...++|.+....... . ...+|.
T Consensus       230 w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~  308 (341)
T 2qjo_A          230 IALPGGFIKQNETLVEGMLRELKEETRLKVPLPVL-RGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDA  308 (341)
T ss_dssp             EECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHH-HHTEEEEEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC-----
T ss_pred             EECCCCcCCCCCCHHHHHHHHHhhhhCCccccccc-cccccceEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCce
Confidence            89999999999999999999999999999876554 43    122322221  223445677776544332 1 233677


Q ss_pred             ceeEEEeHHHHHHh--cCchhHHHHHHHHHHH
Q 033333           73 RSRKWMSVAEARKV--CQHWWMKEALDRLVMR  102 (121)
Q Consensus        73 ~~~~W~~~~~l~~~--~~~~~~~~~~~~~~~~  102 (121)
                      .+++|++++++.++  ...+..+.++..+...
T Consensus       309 ~~~~W~~~~el~~~~~~~~~~~~~il~~~~~~  340 (341)
T 2qjo_A          309 QKAWWMSLADLYAQEEQIYEDHFQIIQHFVSK  340 (341)
T ss_dssp             -CEEEEEHHHHHHTGGGBCTTHHHHHHHHC--
T ss_pred             eeEEEeeHHHHhhhhhhhchHHHHHHHHHHhc
Confidence            88999999999997  5667777777766543

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.73  E-value=9.1e-19  Score=108.32  Aligned_cols=94  Identities=18%  Similarity=0.182  Sum_probs=69.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+..+  +.....++|.+......  ...+|..+++|+++
T Consensus        33 w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~  107 (129)
T 1mut_A           33 LEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSL-FEKLEYEFP--DRHITLWFWLVERWEGE--PWGKEGQPGEWMSL  107 (129)
T ss_dssp             EECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECC-CCCCBCCCS--SCEEECCCEEEEECSSC--CCCCSSCCCEEEES
T ss_pred             EECCccCcCCCCCHHHHHHHHHHHHhCCccccceE-EEEEEEecC--CceEEEEEEEEEccCCc--cCCcccceeEEeCH
Confidence            89999999999999999999999999999887776 776654333  22333456776654432  12356677899999


Q ss_pred             HHHHHhcCchhHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRL   99 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~   99 (121)
                      +++.++...+.++.++..+
T Consensus       108 ~el~~~~~~~~~~~~l~~l  126 (129)
T 1mut_A          108 VGLNADDFPPANEPVIAKL  126 (129)
T ss_dssp             SSCCTTTSCTTCHHHHHHH
T ss_pred             HHcccccCCchhHHHHHHH
Confidence            9999887777666666553

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.73  E-value=4.4e-18  Score=114.20  Aligned_cols=88  Identities=20%  Similarity=0.089  Sum_probs=63.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc--c---ccccCCccee
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL--A---EWPEKNVRSR   75 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~--~---~~~~~e~~~~   75 (121)
                      |.||||++|+||++++||+||++||||+.+..... ++.+ +.++ +......++|++......  .   ....+|..++
T Consensus        92 welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~-l~~~-~~~~-g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~  168 (209)
T 1g0s_A           92 LEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKP-VLSF-LASP-GGTSERSSIMVGEVDATTASGIHGLADENEDIRV  168 (209)
T ss_dssp             EECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEE-EEEE-ESCT-TTBCCEEEEEEEECCGGGCC--------CCSCEE
T ss_pred             EEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEE-eEEE-ecCC-CccCcEEEEEEEEEccccccCCCCCCCCCcEEEE
Confidence            78999999999999999999999999999877666 7765 3323 222345577777753321  1   1223567789


Q ss_pred             EEEeHHHHHHhcCchh
Q 033333           76 KWMSVAEARKVCQHWW   91 (121)
Q Consensus        76 ~W~~~~~l~~~~~~~~   91 (121)
                      +|++++++.+++.++.
T Consensus       169 ~w~~~~el~~~i~~g~  184 (209)
T 1g0s_A          169 HVVSREQAYQWVEEGK  184 (209)
T ss_dssp             EEEEHHHHHHHHHTTS
T ss_pred             EEEEHHHHHHHHHcCC
Confidence            9999999999865543

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.73  E-value=3e-18  Score=113.47  Aligned_cols=89  Identities=15%  Similarity=-0.015  Sum_probs=63.3

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc----ccccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA----EWPEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~   76 (121)
                      |.||||+++ ||++++||+||++||||+.+..... ++.+. ... +......++|.+.......    ....+|..+++
T Consensus        81 w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~-l~~~~-~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~  156 (191)
T 3o6z_A           81 IESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRK-LFELY-MSP-GGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVL  156 (191)
T ss_dssp             EECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEE-EEEEE-SCT-TTBCCEEEEEEEECCTTCC--------CCSSEEE
T ss_pred             EEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEE-EEEEE-eCC-CccCcEEEEEEEEEcccccccCCCCCCCcEEEEE
Confidence            889999999 9999999999999999999877666 77642 222 2233456778777654211    11256788899


Q ss_pred             EEeHHHHHHhcCchhHH
Q 033333           77 WMSVAEARKVCQHWWMK   93 (121)
Q Consensus        77 W~~~~~l~~~~~~~~~~   93 (121)
                      |++++++.+++.++.+.
T Consensus       157 w~~~~el~~~~~~g~i~  173 (191)
T 3o6z_A          157 ELPFSQALEMIKTGEIR  173 (191)
T ss_dssp             EEEHHHHHHHHHHSSCC
T ss_pred             EEEHHHHHHHHHcCCCC
Confidence            99999999987655443

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.73  E-value=5.3e-18  Score=114.58  Aligned_cols=90  Identities=17%  Similarity=0.037  Sum_probs=62.5

Q ss_pred             CccCCcccCC-CCCHHHHHHHHHHHHhCcee--eeecceeeeeEeeeCCCCCeeEEEEEEeEecccc------cccccCC
Q 033333            1 MLFPKGGWEI-DESIQEAALRETIEEAGVTG--IVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL------AEWPEKN   71 (121)
Q Consensus         1 W~lPgG~ve~-gE~~~eaa~REl~EEtG~~~--~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~~~~e   71 (121)
                      |.||||++|+ ||++++||+||++||||+.+  ..... ++.+..  ..+......++|.+......      .....+|
T Consensus        97 welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~-l~~~~~--~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E  173 (218)
T 3q91_A           97 VELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRR-VATYWS--GVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGE  173 (218)
T ss_dssp             EECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEE-EEEEEE--C---CCEEEEEEEEEECGGGBCC---------C
T ss_pred             EECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceEE-EEEEec--CCCccceEEEEEEEEECCcccccCCCCCCCCCc
Confidence            7899999999 99999999999999999998  44444 565432  22222345677877765321      1122367


Q ss_pred             cceeEEEeHHHHHHhcCchhHH
Q 033333           72 VRSRKWMSVAEARKVCQHWWMK   93 (121)
Q Consensus        72 ~~~~~W~~~~~l~~~~~~~~~~   93 (121)
                      ..++.|++++++.+++..+.+.
T Consensus       174 ~~ev~wv~l~el~~~i~~g~i~  195 (218)
T 3q91_A          174 LIEVVHLPLEGAQAFADDPDIP  195 (218)
T ss_dssp             CEEEEEEEGGGHHHHHHCTTSC
T ss_pred             EEEEEEEEHHHHHHHHHcCCCC
Confidence            8889999999999987655443

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.72  E-value=1.9e-17  Score=107.19  Aligned_cols=86  Identities=22%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE----eeeCCCC---------CeeEEEEEEeEeccccc-c
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN----FKSRAHN---------TDYQGYMFPLLVQDQLA-E   66 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~----~~~~~~~---------~~~~~~~f~~~~~~~~~-~   66 (121)
                      |.+|||++++||++.+||+||++||||+.+..... ++.+.    |..+...         .....++|.+....... .
T Consensus        33 w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  111 (164)
T 2kdv_A           33 WQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRI-LASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEI  111 (164)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEE-EEECSSCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGC
T ss_pred             EECCeeecCCCCCHHHHHHHHHHHHHCCCccceEE-EEEecceeEEecCcceeeeccCcccccceeEEEEEEecCCcccc
Confidence            89999999999999999999999999999876665 66542    2222110         12245778877654321 1


Q ss_pred             c----ccCCcceeEEEeHHHHHHhc
Q 033333           67 W----PEKNVRSRKWMSVAEARKVC   87 (121)
Q Consensus        67 ~----~~~e~~~~~W~~~~~l~~~~   87 (121)
                      .    +..|..+++|++++++.+.+
T Consensus       112 ~l~~~~~~E~~~~~W~~~~e~~~~l  136 (164)
T 2kdv_A          112 NMQTSSTPEFDGWRWVSYWYPVRQV  136 (164)
T ss_dssp             CSCSSSSCSEEEEEEEETTTGGGGS
T ss_pred             ccCCCCCchhceEEEecHHHhhhhh
Confidence            1    23477789999999986653

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.72  E-value=8.4e-18  Score=112.57  Aligned_cols=87  Identities=18%  Similarity=0.110  Sum_probs=60.3

Q ss_pred             CccCCcccC-CCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc---ccCCcceeE
Q 033333            1 MLFPKGGWE-IDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW---PEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve-~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~   76 (121)
                      |.||||+++ +||++++||+||++||||+.+..... ++.+ +..+ +......++|.+.........   ...|..+++
T Consensus        72 w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~-~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~  148 (207)
T 1mk1_A           72 WELPAGLLDVAGEPPHLTAARELREEVGLQASTWQV-LVDL-DTAP-GFSDESVRVYLATGLREVGRPEAHHEEADMTMG  148 (207)
T ss_dssp             EECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEE-EEEE-CSCT-TTBCCCEEEEEEEEEEECCC----------CEE
T ss_pred             EEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEE-EEEE-EcCC-CccccEEEEEEEEccccCCCCCCCCCCceEEEE
Confidence            899999999 99999999999999999999988776 7665 3322 222224566776644332221   235677899


Q ss_pred             EEeHHHHHHhcCch
Q 033333           77 WMSVAEARKVCQHW   90 (121)
Q Consensus        77 W~~~~~l~~~~~~~   90 (121)
                      |++++++.+++..+
T Consensus       149 Wv~~~el~~~~~~~  162 (207)
T 1mk1_A          149 WYPIAEAARRVLRG  162 (207)
T ss_dssp             EEEHHHHHHHHHTT
T ss_pred             EEEHHHHHHHHHcC
Confidence            99999999986544

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.72  E-value=2.1e-17  Score=110.99  Aligned_cols=85  Identities=15%  Similarity=0.073  Sum_probs=61.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc------ccc-ccCCcc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL------AEW-PEKNVR   73 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~-~~~e~~   73 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+ +..+ +......++|++.+....      ... ..+|..
T Consensus        94 welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~-l~~~-~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~  170 (212)
T 2dsc_A           94 IEFPAGLIDDGETPEAAALRELEEETGYKGDIAEC-SPAV-CMDP-GLSNCTIHIVTVTINGDDAENARPKPKPGDGEFV  170 (212)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEE-CCCE-ESCT-TTBCCEEEEEEEEEETTSGGGSSCCCCCCTTCCC
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHhCCCccceEE-eccE-EcCC-CccCceEEEEEEEEeCccccccCCCCCCCCCceE
Confidence            89999999999999999999999999999887766 6654 2222 212234456666543211      112 236788


Q ss_pred             eeEEEeHHHHHHhcC
Q 033333           74 SRKWMSVAEARKVCQ   88 (121)
Q Consensus        74 ~~~W~~~~~l~~~~~   88 (121)
                      +++|++++++.+++.
T Consensus       171 ~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          171 EVISLPKNDLLQRLD  185 (212)
T ss_dssp             EEEEEEGGGHHHHHH
T ss_pred             EEEEEEHHHHHHHHH
Confidence            899999999998865

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.71  E-value=1.1e-17  Score=110.69  Aligned_cols=84  Identities=20%  Similarity=0.131  Sum_probs=63.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc--cccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~   78 (121)
                      |.||||++++||++++||+||++||||+.+..... ++.+.+.....  ...+++|.+......  .....+|..+++|+
T Consensus        66 w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~  142 (194)
T 1nqz_A           66 IAFPGGSLDAGETPTQAALREAQEEVALDPAAVTL-LGELDDVFTPV--GFHVTPVLGRIAPEALDTLRVTPEVAQIITP  142 (194)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEE-EEECCCEEETT--TEEEEEEEEEECGGGGGGCCCCTTEEEEECC
T ss_pred             EECCcccCCCCCCHHHHHHHHHHHHHCCCccceEE-EEEccCccCCC--CeEEEEEEEEecCCccccCCCccceeEEEEE
Confidence            89999999999999999999999999999887666 77765443322  235567777765332  22334677889999


Q ss_pred             eHHHH-HHhc
Q 033333           79 SVAEA-RKVC   87 (121)
Q Consensus        79 ~~~~l-~~~~   87 (121)
                      +++++ .+..
T Consensus       143 ~~~el~~~~~  152 (194)
T 1nqz_A          143 TLAELRAVPL  152 (194)
T ss_dssp             BHHHHHHSCC
T ss_pred             EHHHhccCCC
Confidence            99999 7653

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.71  E-value=1.1e-17  Score=116.35  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=71.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~   78 (121)
                      |.||||++++||++++||+||++||||+.+..  ... ++.+.........+.+.++|.+.+.... ..+.+|..+++|+
T Consensus        72 W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~-l~~~~~~~r~~~~~~~~~~y~a~~~~~~-~~~~~E~~~~~W~  149 (273)
T 2fml_A           72 WALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ-LHSFSRPDRDPRGWVVTVSYLAFIGEEP-LIAGDDAKEVHWF  149 (273)
T ss_dssp             EECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE-EEEECCTTSSTTSSEEEEEEEEECCCCC-CCCCTTEEEEEEE
T ss_pred             EECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEE-EEEEcCCCCCCCceEEEEEEEEEeCCCC-CCCCcceeeEEEE
Confidence            89999999999999999999999999987553  333 4544333222223456677777765543 3344677889999


Q ss_pred             eHHHHHHhc-----------------------CchhHHHHHHHHHHHhcccc
Q 033333           79 SVAEARKVC-----------------------QHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        79 ~~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~  107 (121)
                      +++++...+                       ..-+...++..++++++.+.
T Consensus       150 ~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~LafdH~~Il~~al~rlr~kl  201 (273)
T 2fml_A          150 NLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKAFNRVVDKM  201 (273)
T ss_dssp             EEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHHHHHHHHHHHHHHT
T ss_pred             EhhHhhhhhccccchhhhccccccccccCCCcccccHHHHHHHHHHHHHHHh
Confidence            999754432                       12234567777777766554

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.68  E-value=1e-16  Score=102.47  Aligned_cols=96  Identities=21%  Similarity=0.228  Sum_probs=69.6

Q ss_pred             CccCCcccCCCCCHH-HHHHHHHHHHhC-ceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQ-EAALRETIEEAG-VTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~-eaa~REl~EEtG-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~   78 (121)
                      |.||||++++||+++ +||+||++|||| +.+..... ++.+.+...  +.....++|.+.......  ...+..+++|+
T Consensus        51 w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~-l~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~  125 (155)
T 1x51_A           51 WEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRH-LGEVVHTFS--HIKLTYQVYGLALEGQTP--VTTVPPGARWL  125 (155)
T ss_dssp             EECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEE-CCCBCCBCS--SCEEEEEEEEEECSSCCC--CCCCCTTEEEE
T ss_pred             ecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeee-cceEEEecC--CccEEEEEEEEEEcCCCC--CCCCCCccEEc
Confidence            899999999999996 999999999999 87655454 665544332  223345677776553321  12355678999


Q ss_pred             eHHHHHHhcCchhHHHHHHHHHH
Q 033333           79 SVAEARKVCQHWWMKEALDRLVM  101 (121)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~~~  101 (121)
                      +++++.++.....++.++..+..
T Consensus       126 ~~~el~~~~~~~~~~~~l~~~~~  148 (155)
T 1x51_A          126 TQEEFHTAAVSTAMKKVFRVYQG  148 (155)
T ss_dssp             EHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             cHHHhhhcCCCHHHHHHHHHHHh
Confidence            99999998777777777776654

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.64  E-value=1.5e-16  Score=110.53  Aligned_cols=85  Identities=20%  Similarity=0.235  Sum_probs=55.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc-c-c-cccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL-A-E-WPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~-~-~~~~e~~~~~W   77 (121)
                      |.+|||++++||++++||+||++||||+.+..... +..+.  ...... ...++|.+...... . . ...+|..+++|
T Consensus       128 W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~-~~~~~--~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W  203 (271)
T 2a6t_A          128 WGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN-PNEFI--DMTIRG-QNVRLYIIPGISLDTRFESRTRKEISKIEW  203 (271)
T ss_dssp             CBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCC-TTCEE--EEEETT-EEEEEEEECCCCTTCCCC------EEEEEE
T ss_pred             EECCcccCCCCcCHHHHHHHHHHHHhCCCceeeee-eeeec--cCCcCC-ceEEEEEEEEecCcccCCCCCccceeEEEE
Confidence            99999999999999999999999999999876433 33222  211111 23455665543321 1 1 13367788999


Q ss_pred             EeHHHHHHhcCc
Q 033333           78 MSVAEARKVCQH   89 (121)
Q Consensus        78 ~~~~~l~~~~~~   89 (121)
                      ++++++.++...
T Consensus       204 ~~~~el~~~~~~  215 (271)
T 2a6t_A          204 HNLMDLPTFKKN  215 (271)
T ss_dssp             EEGGGSTTCC--
T ss_pred             EEHHHHHHHHhc
Confidence            999999886443

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.64  E-value=3.6e-16  Score=109.73  Aligned_cols=104  Identities=13%  Similarity=-0.004  Sum_probs=68.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCcee------------eeeccee---ee--eEeeeCCC----CCeeEEEEEEeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTG------------IVECELL---GE--WNFKSRAH----NTDYQGYMFPLL   59 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~------------~~~~~~l---~~--~~~~~~~~----~~~~~~~~f~~~   59 (121)
                      |.||||+|++||++.+||+||++||||+.+            ....+ +   +.  |.......    .......+|.+.
T Consensus       152 W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l-~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~~  230 (292)
T 1q33_A          152 WAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKL-FSQDHLVIYKGYVDDPRNTDNAWMETEAVNYH  230 (292)
T ss_dssp             EECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHH-TTTSEEEEEEEECCCTTCCSSEEEEEEEEEEE
T ss_pred             EeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHH-hhcccceeecccccCCCCCcccEEEEEEEEEE
Confidence            899999999999999999999999999983            12222 2   22  22111111    113345566655


Q ss_pred             ecccc-----cccccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           60 VQDQL-----AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        60 ~~~~~-----~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                      .....     ...+.+|..+++|++++++..+  ....+.++..+.+++....
T Consensus       231 ~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L--~~~h~~il~~~~~~~~a~~  281 (292)
T 1q33_A          231 DETGEIMDNLMLEAGDDAGKVKWVDINDKLKL--YASHSQFIKLVAEKRDAHW  281 (292)
T ss_dssp             ESSSTTTTTCCCCCCTTCSEEEEEECCTTCCC--STTHHHHHHHHHHHHTCCC
T ss_pred             eCCCccccccccCCCCccceEEEEEcccCccc--CHhHHHHHHHHHHHhcCcc
Confidence            43221     1223467888999999999865  4566788888887765433

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.63  E-value=9.7e-17  Score=107.86  Aligned_cols=82  Identities=16%  Similarity=0.025  Sum_probs=58.1

Q ss_pred             CccCCcccCCCC-CHHHHHHHHHHHHhCceeeeecc----eeeeeEeeeCCCCCeeEEEEEEeEecccccc---------
Q 033333            1 MLFPKGGWEIDE-SIQEAALRETIEEAGVTGIVECE----LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE---------   66 (121)
Q Consensus         1 W~lPgG~ve~gE-~~~eaa~REl~EEtG~~~~~~~~----~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---------   66 (121)
                      |.||||++++|| ++++||+||++||||+.+....+    .++.+.+..+   .....++|.+........         
T Consensus        68 w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~e~~~~~~  144 (212)
T 1u20_A           68 LGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP---QKCVTHFYIKELKLEEIERIEAEAVNA  144 (212)
T ss_dssp             EECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT---SCEEEEEEEEECCHHHHHHHHHHHTTS
T ss_pred             EECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC---CcEEEEEEEEEecCCCccccccccccc
Confidence            899999999999 99999999999999999875431    1444433322   334567787776532211         


Q ss_pred             -cccCCcceeEEEeHHHHHH
Q 033333           67 -WPEKNVRSRKWMSVAEARK   85 (121)
Q Consensus        67 -~~~~e~~~~~W~~~~~l~~   85 (121)
                       ....+..++.|++++++.+
T Consensus       145 ~~~~~Ev~~~~wvpl~el~~  164 (212)
T 1u20_A          145 KDHGLEVMGLIRVPLYTLRD  164 (212)
T ss_dssp             TTBTTTEEEEEECCCSBCTT
T ss_pred             ccCCcceEEEEEEEHHHhhh
Confidence             1224667799999999865

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.58  E-value=4.4e-15  Score=107.16  Aligned_cols=96  Identities=9%  Similarity=-0.044  Sum_probs=76.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++| ++++|+.||++||||+.+..... ++.+.+...+  .....++|.+.....     ..+..+++|+++
T Consensus       269 WefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~-l~~~~h~~~h--~~~~~~~~~~~~~~~-----~~e~~~~~Wv~~  339 (369)
T 3fsp_A          269 WEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEP-IVSFEHAFSH--LVWQLTVFPGRLVHG-----GPVEEPYRLAPE  339 (369)
T ss_dssp             EECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCC-CCEEEEECSS--EEEEEEEEEEEECCS-----SCCCTTEEEEEG
T ss_pred             ccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecc-cccEEEEcce--EEEEEEEEEEEEcCC-----CCCccccEEeeH
Confidence            89999999999 99999999999999999988887 8877665543  334556777765442     235677999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhcc
Q 033333           81 AEARKVCQHWWMKEALDRLVMRLTS  105 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~  105 (121)
                      +++..+...+.++.++..+.+.+..
T Consensus       340 ~el~~~~l~~~~~~il~~l~~~~~~  364 (369)
T 3fsp_A          340 DELKAYAFPVSHQRVWREYKEWASG  364 (369)
T ss_dssp             GGGGGSCCCHHHHHHHHHHHHHTC-
T ss_pred             HHhhhCCCCHHHHHHHHHHHHHhcC
Confidence            9999987778888888887776543

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.58  E-value=1.2e-15  Score=103.02  Aligned_cols=82  Identities=13%  Similarity=0.055  Sum_probs=56.1

Q ss_pred             CccCCcccCCCC-CHHHHHHHHHHHHhCceeee--ecceeeeeEeeeCCCCCeeEEEEEEeEeccccc----------cc
Q 033333            1 MLFPKGGWEIDE-SIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA----------EW   67 (121)
Q Consensus         1 W~lPgG~ve~gE-~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~----------~~   67 (121)
                      |.||||++++|| ++++||+||++||||+.+..  ... +..+... .........++|.+.+.....          ..
T Consensus        77 w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~-l~~~~~~-~~~~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~  154 (217)
T 2xsq_A           77 LGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVER-TDYRSSH-VGSGPRVVAHFYAKRLTLEELLAVEAGATRAKD  154 (217)
T ss_dssp             EECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCG-GGEEEEE-ECSSSSEEEEEEEEECCHHHHHHHHHHGGGSTT
T ss_pred             EECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEE-EEEEeec-CCCCCeEEEEEEEEEeccccceecccccccccc
Confidence            899999999999 99999999999999999864  222 3333211 111123456777777654321          11


Q ss_pred             ccCCcceeEEEeHHHHH
Q 033333           68 PEKNVRSRKWMSVAEAR   84 (121)
Q Consensus        68 ~~~e~~~~~W~~~~~l~   84 (121)
                      ...|..++.|++++++.
T Consensus       155 ~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          155 HGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             BTTTEEEEEECCCSBCT
T ss_pred             cCCceeeEEEEEHHHhh
Confidence            12466788999998886

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.52  E-value=9.5e-14  Score=94.67  Aligned_cols=85  Identities=13%  Similarity=0.096  Sum_probs=60.0

Q ss_pred             CccC-CcccCCC------CC---HHHHHHHHHHHHhCceeee-----ecceeeeeEeeeCCCCC---eeEEEEEEeEecc
Q 033333            1 MLFP-KGGWEID------ES---IQEAALRETIEEAGVTGIV-----ECELLGEWNFKSRAHNT---DYQGYMFPLLVQD   62 (121)
Q Consensus         1 W~lP-gG~ve~g------E~---~~eaa~REl~EEtG~~~~~-----~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~   62 (121)
                      |.+| ||++++|      |+   +.+||+||++||||+.+..     ... ++.+.|.....+.   ..+.++|.+....
T Consensus        89 W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~-l~~~~y~~~~~~~~~~~e~~~vf~~~~~~  167 (235)
T 2dho_A           89 FTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINY-LTRIHYKAQSDGIWGEHEIDYILLVRMNV  167 (235)
T ss_dssp             EESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEE-EEEEEEEEECSSSBEEEEEEEEEEEECCC
T ss_pred             EEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEE-EEEEEEeccCCCccceeEEEEEEEEEECC
Confidence            7888 5999999      88   5999999999999998652     234 6776665543222   2345677776533


Q ss_pred             cccccccCCcceeEEEeHHHHHHhc
Q 033333           63 QLAEWPEKNVRSRKWMSVAEARKVC   87 (121)
Q Consensus        63 ~~~~~~~~e~~~~~W~~~~~l~~~~   87 (121)
                      . .....+|..+++|++++++.+++
T Consensus       168 ~-~~~~~~Ev~~~~wv~~~el~~~l  191 (235)
T 2dho_A          168 T-LNPDPNEIKSYCYVSKEELKELL  191 (235)
T ss_dssp             C-CCCCTTTEEEEEEECHHHHHHHH
T ss_pred             C-CcCChHHEEEEEEEcHHHHHHHH
Confidence            2 22223678889999999998864

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.51  E-value=9.1e-14  Score=95.35  Aligned_cols=100  Identities=14%  Similarity=0.167  Sum_probs=67.1

Q ss_pred             CccCC-cccCCC------CCH---HHHHHHHHHHHhCceeee-----ecceeeeeEeeeCCCCC---eeEEEEEEeEecc
Q 033333            1 MLFPK-GGWEID------ESI---QEAALRETIEEAGVTGIV-----ECELLGEWNFKSRAHNT---DYQGYMFPLLVQD   62 (121)
Q Consensus         1 W~lPg-G~ve~g------E~~---~eaa~REl~EEtG~~~~~-----~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~   62 (121)
                      |.+|+ |++++|      |++   .+||+||++||||+.+..     ... ++.+.|.......   ..+.++|.+....
T Consensus       100 W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~-l~~~~y~~~~~~~~~~~e~~~vf~~~~~~  178 (246)
T 2pny_A          100 FTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVF-MTIYHHKAKSDRIWGEHEICYLLLVRKNV  178 (246)
T ss_dssp             BCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEE-EEEEEEEEESSSSBEEEEEEEEEEEECCC
T ss_pred             eEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEE-EEEEEEEecCCCceeeeEEEEEEEEEECC
Confidence            78885 999999      887   999999999999998652     234 6666655443222   3345667776543


Q ss_pred             cccccccCCcceeEEEeHHHHHHhcCc---------hhHHHHHHHHHHH
Q 033333           63 QLAEWPEKNVRSRKWMSVAEARKVCQH---------WWMKEALDRLVMR  102 (121)
Q Consensus        63 ~~~~~~~~e~~~~~W~~~~~l~~~~~~---------~~~~~~~~~~~~~  102 (121)
                      . .....+|..+++|++++++.+++..         |+++.++..++..
T Consensus       179 ~-~~~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ftp~~~~i~~~~l~~  226 (246)
T 2pny_A          179 T-LNPDPSETKSILYLSQEELWELLEREARGEVKVTPWLRTIAERFLYR  226 (246)
T ss_dssp             C-CCCCTTTEEEEEEECHHHHHHHHHHHHHTSSCBCHHHHHHHHHTHHH
T ss_pred             C-CCCChHHeeEEEEEeHHHHHHHHHhccCCCceECHhHHHHHHHHHHH
Confidence            2 2222368888999999999886432         4455555554444

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.48  E-value=1.3e-13  Score=96.82  Aligned_cols=88  Identities=13%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHhCceeeeecc--eeeeeEeeeCCCC--CeeEEEEEEeEeccccccccc-CCcceeE
Q 033333            2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECE--LLGEWNFKSRAHN--TDYQGYMFPLLVQDQLAEWPE-KNVRSRK   76 (121)
Q Consensus         2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~--~l~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~-~e~~~~~   76 (121)
                      .+|+|++++||++.+||+||+.||+|+.+.....  .++.+.|......  .....++|.+.++......++ +|..+++
T Consensus       153 ~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~  232 (300)
T 3dup_A          153 NMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFM  232 (300)
T ss_dssp             ESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEE
T ss_pred             cccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEE
Confidence            4789999999999999999999999998754221  1555555433222  233456777776655443344 6888899


Q ss_pred             EEeHHHHHHhcCc
Q 033333           77 WMSVAEARKVCQH   89 (121)
Q Consensus        77 W~~~~~l~~~~~~   89 (121)
                      |++++++.+++..
T Consensus       233 ~v~~~El~~~l~~  245 (300)
T 3dup_A          233 LWPAAKVVEAVRT  245 (300)
T ss_dssp             EEEHHHHHHHHHH
T ss_pred             EECHHHHHHHHhc
Confidence            9999999988665

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.38  E-value=1.5e-12  Score=92.33  Aligned_cols=95  Identities=16%  Similarity=0.208  Sum_probs=71.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHh-CceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEA-GVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEt-G~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.||||.++.++  .++|+||++||| |+.++...+ +++|....  .+  .+..+|.+...+..       ..+++||+
T Consensus       204 W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~~~~L-~~v~~~~~--~~--~~~i~f~~~~~~g~-------~~e~~~f~  269 (321)
T 3rh7_A          204 LSLPNCTVEGGD--PARTLAAYLEQLTGLNVTIGFL-YSVYEDKS--DG--RQNIVYHALASDGA-------PRQGRFLR  269 (321)
T ss_dssp             EBCCEEEESSSC--HHHHHHHHHHHHHSSCEEEEEE-EEEEECTT--TC--CEEEEEEEEECSSC-------CSSSEEEC
T ss_pred             ccCCcccCCCCh--hHHHHHHHHHHhcCCEEeeceE-EEEEEcCC--Cc--eEEEEEEEEeCCCC-------eeeeEEEC
Confidence            999988665444  459999999997 999999887 88876432  22  23468888765432       26789999


Q ss_pred             HHHHHHh-cCchhHHHHHHHHHHHhcccccC
Q 033333           80 VAEARKV-CQHWWMKEALDRLVMRLTSQQLH  109 (121)
Q Consensus        80 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~  109 (121)
                      +++++.+ +.++.++.+++..++.-.....+
T Consensus       270 ~~elp~~~~~~~~~~~~L~~y~~e~~~g~f~  300 (321)
T 3rh7_A          270 PAELAAAKFSSSATADIINRFVLESSIGNFG  300 (321)
T ss_dssp             HHHHTTCEESSHHHHHHHHHHHHTTSCSSCC
T ss_pred             HHHCCCcccCCHHHHHHHHHHHHHhhcCCCC
Confidence            9999987 56799999998888766655443

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.35  E-value=2.2e-12  Score=87.72  Aligned_cols=86  Identities=21%  Similarity=0.267  Sum_probs=56.7

Q ss_pred             CccCCcccCCCCC--------------------HHHHHHHHHHHHhCceeeeecc-------------------------
Q 033333            1 MLFPKGGWEIDES--------------------IQEAALRETIEEAGVTGIVECE-------------------------   35 (121)
Q Consensus         1 W~lPgG~ve~gE~--------------------~~eaa~REl~EEtG~~~~~~~~-------------------------   35 (121)
                      |+||||+||++|+                    +..||+||++||||+.+.....                         
T Consensus        42 ~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~  121 (232)
T 3qsj_A           42 VAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALS  121 (232)
T ss_dssp             EECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHH
T ss_pred             EECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccChhhHHHHHHHHHcCchhHH
Confidence            8899999999987                    5899999999999998532110                         


Q ss_pred             -------------eeeeeE-eeeCC-CCCeeEEEEEEeEeccccc-ccccCCcceeEEEeHHHHHHh
Q 033333           36 -------------LLGEWN-FKSRA-HNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEARKV   86 (121)
Q Consensus        36 -------------~l~~~~-~~~~~-~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~~l~~~   86 (121)
                                   .|..+. ...+. ...++.+.||++.+..... ....+|..+++|++++++.+.
T Consensus       122 ~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lpq~~~v~~d~~E~~~~~W~~p~eal~~  188 (232)
T 3qsj_A          122 AWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWTPARDMLTR  188 (232)
T ss_dssp             HHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECSSCCCCCCCSSSEEEEEEEEHHHHHHH
T ss_pred             HHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECCCCCCCCCCCCceEEEEEEcHHHHHHH
Confidence                         011111 11111 1235667888877763221 223478888999999999754

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.19  E-value=3.1e-12  Score=84.10  Aligned_cols=59  Identities=12%  Similarity=-0.017  Sum_probs=40.7

Q ss_pred             CccCCcccCCCC-CHHHHHHHHHHHHhCc-eeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccc
Q 033333            1 MLFPKGGWEIDE-SIQEAALRETIEEAGV-TGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ   63 (121)
Q Consensus         1 W~lPgG~ve~gE-~~~eaa~REl~EEtG~-~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~   63 (121)
                      |.||||+||+|| |+++|+.||+.||+|+ .+..... +....+.++   .....++|.+.....
T Consensus        56 weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y-~~s~~~~yp---~~V~LHfY~crl~~G  116 (214)
T 3kvh_A           56 LGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADY-LSSHLTEGP---HRVVAHLYARQLTLE  116 (214)
T ss_dssp             EECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGE-EEEEEC-------CEEEEEEEEECCHH
T ss_pred             EeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeee-EEEEeccCC---CEEEEEEEEEEeeCC
Confidence            899999999999 9999999999999997 4555444 544443333   234557888776543

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.98  E-value=1.4e-09  Score=72.07  Aligned_cols=82  Identities=15%  Similarity=0.084  Sum_probs=55.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhC------ceeeeecceeeeeEeeeCCC-----------CCeeEEEEEEeEeccc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAG------VTGIVECELLGEWNFKSRAH-----------NTDYQGYMFPLLVQDQ   63 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG------~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~f~~~~~~~   63 (121)
                      |.||||++++||++++|+.||+.||+|      ....+... +|.|-.++-..           .......+|++.+...
T Consensus        85 f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~-lg~wwRp~fet~~YPYlP~Hit~pKE~~kly~V~Lp~~  163 (208)
T 3bho_A           85 FKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDC-IGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEK  163 (208)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEE-EEEEEECSSSSCCBSSCCTTCCSCSEEEEEEEEECCSS
T ss_pred             EECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhhe-EEEEecCCCCCcCCCCCCcccCchhhheeeeeEecCcc
Confidence            789999999999999999999999999      45566666 77754222111           1144567888877665


Q ss_pred             ccccccCCcceeEEEeHHHHH
Q 033333           64 LAEWPEKNVRSRKWMSVAEAR   84 (121)
Q Consensus        64 ~~~~~~~e~~~~~W~~~~~l~   84 (121)
                      ...... ....+.-+++=++-
T Consensus       164 ~~f~vP-kn~kL~AvPLfely  183 (208)
T 3bho_A          164 ALFAVP-KNYKLVAAPLFELY  183 (208)
T ss_dssp             EEEEEE-TTCEEEEEEHHHHT
T ss_pred             ceEecC-CCCeEEeecHHhhh
Confidence            432212 34567778866663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	1e-11
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-11
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	5e-09
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	1e-08
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-06
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	3e-06
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-05
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	1e-05
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	8e-05

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 1e-11
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
            P GG E +E    AA+RE  EEAGV G +   L+G +          ++ Y++ L+V +
Sbjct: 41  VPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLVGIFEN----QERKHRTYVYVLIVTE 95

Query: 63  QLAEWPEKN--VRSRKWMSVAEARKVCQH 89
            L +W +     R R+W  + +A KV Q+
Sbjct: 96  VLEDWEDSVNIGRKREWFKIEDAIKVLQY 124

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 1e-11
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 2/105 (1%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE--WNFKSRAHNTDYQGYMFPLLV 60
            PKG  E  E   E ALR T EEAG+       + G          +      Y    + 
Sbjct: 45  PPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVK 104

Query: 61  QDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS 105
              +        ++ +W+ + EA ++ Q   MK AL      L S
Sbjct: 105 DYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCS 149

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 48.5 bits (115), Expect = 5e-09
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
           FPKG  E  ES++EAA+RE  EE GV    E  L             + + + F  L++ 
Sbjct: 28  FPKGHPEPGESLEEAAVREVWEETGVR--AEVLLPLYPTRYVNPKGVEREVHWF--LMRG 83

Query: 63  QLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 103
           + A   E+ +    W S  EAR +         L+  + RL
Sbjct: 84  EGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL 124

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 47.5 bits (112), Expect = 1e-08
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD---YQGYMFPLL 59
            P G  E  E+ +EA  RE +EE G++ +     LGE +    +++     Y    F + 
Sbjct: 44  LPGGEIEGTETKEEAIHREVLEELGIS-VEIGCYLGEADEYFYSNHRQTAYYNPGYFYVA 102

Query: 60  VQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 100
              +    P +   +  W++  EA ++ +    + A+++ +
Sbjct: 103 NTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWL 143

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 41.8 bits (97), Expect = 2e-06
 Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
           +P G  E +E+  EA  RE  EE G+         G  +  +             +   +
Sbjct: 27  YPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYPE 86

Query: 63  Q---------LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 103
           +         L +    ++++ +W+ V E  ++     +++ +   +  L
Sbjct: 87  ETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTL 136

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.7 bits (97), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
           FPKG  + DES  + A+RE  EE G        +             + + Y+ P +  D
Sbjct: 31  FPKGKIDKDESDVDCAIREVYEETGFD--CSSRINPNEFIDMTIRGQNVRLYIIPGISLD 88

Query: 63  -QLAEWPEKNVRSRKWMSVAE 82
            +      K +   +W ++ +
Sbjct: 89  TRFESRTRKEISKIEWHNLMD 109

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY-QGYMFPLLVQ 61
            P G  E  E+ Q+AA+RE  EE G+      + LG +  +           ++      
Sbjct: 46  IPSGAVEDGENPQDAAVREACEETGLRVRPV-KFLGAYLGRFPDGVLILRHVWLAEPEPG 104

Query: 62  DQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL 99
             LA      +    ++S  +  ++     ++    +L
Sbjct: 105 QTLAPAFTDEIAEASFVSREDFAQLYAAGQIRMYQTKL 142

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.4 bits (91), Expect = 1e-05
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
            P G  E  ESI +A  RE +EE G + +    L G +++   ++ T Y  + F   V  
Sbjct: 32  QPAGHLEPGESIIQACSREVLEETGHSFLP-EVLTGIYHWTCASNGTTYLRFTFSGQVVS 90

Query: 63  QLAEWP-EKNVRSRKWMSVAEARKVCQHWWMKEALDRL 99
              +   +  +    W S+ E R           +  +
Sbjct: 91  FDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCI 128

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 8e-05
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 3   FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 62
              G  +  E+I++ A RE  EE+G+T +     +G+  F            +       
Sbjct: 34  GFGGKVQEGETIEDGARRELQEESGLT-VDALHKVGQIVF--EFVGEPELMDVHVFCTDS 90

Query: 63  QLAEWPEKNVRSRKWMSVAE 82
                 E +     W  + +
Sbjct: 91  IQGTPVESDEMRPCWFQLDQ 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.91
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.87
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.87
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.87
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.86
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.86
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.85
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.84
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.83
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.83
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.83
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.81
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.81
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.79
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.78
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.78
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.77
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.76
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.76
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.75
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.74
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.74
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.72
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.71
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.7
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.61
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.57
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.53
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.43
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.12

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=4.8e-24  Score=131.51  Aligned_cols=100  Identities=28%  Similarity=0.274  Sum_probs=79.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++|||+.+||+||++||||+++..... ++.+.+..+. .....+++|.+......  .++++..+++|+++
T Consensus        26 w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~  101 (126)
T d1vcda1          26 WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLP-LYPTRYVNPK-GVEREVHWFLMRGEGAP--RLEEGMTGAGWFSP  101 (126)
T ss_dssp             EECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEECTT-SCEEEEEEEEEEEESCC--CCCTTCCEEEEECH
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEE-EeeeeeccCC-CeEEEEEEEEEEEcCCC--CCCccceEEEEEEH
Confidence            89999999999999999999999999999988776 7766555443 33444566776654432  34467778999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhc
Q 033333           81 AEARKVCQHWWMKEALDRLVMRLT  104 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~  104 (121)
                      +++.++..++..+.+++.+++++.
T Consensus       102 ~e~~~~~~~~~~~~il~~~~~~l~  125 (126)
T d1vcda1         102 EEARALLAFPEDLGLLEVALERLP  125 (126)
T ss_dssp             HHHHHHBCSHHHHHHHHHHHHHSC
T ss_pred             HHHhhccCChHHHHHHHHHHHhCC
Confidence            999999988998999998887753

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.87  E-value=4.4e-22  Score=123.60  Aligned_cols=103  Identities=20%  Similarity=0.138  Sum_probs=76.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE--eeeCCCCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN--FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~   78 (121)
                      |.+|||++++||++.+||+||++||||+++..... +..+.  +............+|.+.........+.+|..+++|+
T Consensus        31 W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~  109 (137)
T d1ktga_          31 WTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTI-HEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWC  109 (137)
T ss_dssp             EESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEE-EEEEEEEEEEEETTEEEEEEEEEEEECSCCCCCCCTTEEEEEEE
T ss_pred             EeCcccccccCCCHHHHHHHHHHHHhCCcceeeee-eeeeeeeeecCCCcceEEEEEEEEEecCCCCcCCCcceEEEEEE
Confidence            89999999999999999999999999999765444 33222  1212222333455566666555544556788889999


Q ss_pred             eHHHHHHhcCchhHHHHHHHHHHHhc
Q 033333           79 SVAEARKVCQHWWMKEALDRLVMRLT  104 (121)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~~~~~~  104 (121)
                      +++++.++..++.++.+++.+.+.+.
T Consensus       110 ~~~e~~~~~~~~~~~~~l~~~~~~L~  135 (137)
T d1ktga_         110 ELEDAIKIADYAEMGSLLRKFSAFLA  135 (137)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             EHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence            99999999888888888888777664

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.87  E-value=5.4e-22  Score=124.54  Aligned_cols=87  Identities=25%  Similarity=0.343  Sum_probs=68.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccc-cccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~   79 (121)
                      |.||||+++.|||+.+||+||++||||+.+..... ++.+.+.....+.....++|.+........ ..++|..+++|++
T Consensus        30 w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~  108 (146)
T d2b0va1          30 LNQPAGHLEPGESIIQACSREVLEETGHSFLPEVL-TGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFS  108 (146)
T ss_dssp             EECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEE-EEEEEEEETTTTEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEE
T ss_pred             EECCeeeECCCCCHHHHHHHHHHHhheeecccceE-EEEEEEecCCCCeEEEEEEEEEEeecCCCCCCCCcceeEEEEee
Confidence            89999999999999999999999999999988777 888777666555555556676665544332 3346778899999


Q ss_pred             HHHHHHhcC
Q 033333           80 VAEARKVCQ   88 (121)
Q Consensus        80 ~~~l~~~~~   88 (121)
                      ++++.++..
T Consensus       109 ~~el~~~~~  117 (146)
T d2b0va1         109 IDEIRAKQA  117 (146)
T ss_dssp             HHHHHHTGG
T ss_pred             HHHHhhCcc
Confidence            999988643

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.87  E-value=3.2e-23  Score=131.01  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=78.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++||++++||+||++||||+++....+ ++.+....+..+.+.+.++|.+...........++..+++|+++
T Consensus        41 W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~~  119 (147)
T d2fb1a2          41 WSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQ-VGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNI  119 (147)
T ss_dssp             EECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEE-EEEECCTTSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEET
T ss_pred             EeCcEeeecCCCCHHHHHHHHHHHHhCCcccceee-eeEecCCcccCCCceEEEEEEEEecCCcccCCCcchhheEEecH
Confidence            89999999999999999999999999999888777 88776554444445555667766555443333356777999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           81 AEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                      ++++.+..+  ..+++..+.++++++.
T Consensus       120 ~~lp~lafD--H~~ii~~a~~~lr~k~  144 (147)
T d2fb1a2         120 NELPALIFD--HPEMVDKAREMMKQKA  144 (147)
T ss_dssp             TSCCCBSTT--HHHHHHHHHHHHHHHH
T ss_pred             HhchhcccC--HHHHHHHHHHHHHHHh
Confidence            999887653  3567777777776553

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.86  E-value=2.1e-21  Score=122.01  Aligned_cols=100  Identities=25%  Similarity=0.344  Sum_probs=73.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeC--CCCCe--eEEEEEEeEecccccccccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR--AHNTD--YQGYMFPLLVQDQLAEWPEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~--~~~~~--~~~~~f~~~~~~~~~~~~~~e~~~~~   76 (121)
                      |.||||++++||++.+||+||++||||+++..... ++.+.+...  .....  ...++|.+...... ..+.++..+++
T Consensus        42 w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~  119 (147)
T d2azwa1          42 YFLPGGEIEGTETKEEAIHREVLEELGISVEIGCY-LGEADEYFYSNHRQTAYYNPGYFYVANTWRQL-SEPLERTNTLH  119 (147)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEEEEEEETTTTEEEEEEEEEEEEEEEEEC-SSCC-CCSEEE
T ss_pred             EECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeE-EEEEEEEeeeccCCceEEEEEEEEEEEecccc-CCCCccceEEE
Confidence            89999999999999999999999999999887776 666543222  22221  23344555433332 23445777899


Q ss_pred             EEeHHHHHHhcCchhHHHHHHHHHHH
Q 033333           77 WMSVAEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        77 W~~~~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      |++++++.+++.+...+.++..++++
T Consensus       120 W~~~~e~~~~l~~~~~r~~l~~~la~  145 (147)
T d2azwa1         120 WVAPEEAVRLLKRGSHRWAVEKWLAA  145 (147)
T ss_dssp             EECHHHHHHHBSCHHHHHHHHHHHHC
T ss_pred             EEEHHHHHHHcCChhHHHHHHHHHhc
Confidence            99999999998888888888877654

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=5.5e-22  Score=122.99  Aligned_cols=99  Identities=13%  Similarity=0.061  Sum_probs=73.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++|||+++||+||++||||+.+..... ++...+..    .....++|.+............|..+++|+++
T Consensus        29 w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~  103 (131)
T d1vk6a2          29 HTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY-VTSQPWPF----PQSLMTAFMAEYDSGDIVIDPKELLEANWYRY  103 (131)
T ss_dssp             CBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEET----TEEEEEEEEEEEEECCCCCCTTTEEEEEEEET
T ss_pred             EecccCCCcCCCcHHHHHHHHHHHHhCCcccceeE-EEEeccCc----CceEEEEEEEEEcCCcccCCCccEEEEEEEcH
Confidence            89999999999999999999999999999988776 66544321    23455677776655443333467888999999


Q ss_pred             HHHHHhcCchhH-HHHHHHHHHHhc
Q 033333           81 AEARKVCQHWWM-KEALDRLVMRLT  104 (121)
Q Consensus        81 ~~l~~~~~~~~~-~~~~~~~~~~~~  104 (121)
                      ++++.+.....+ +.+++..+..++
T Consensus       104 ~el~~l~~~~~i~r~li~~~l~~~r  128 (131)
T d1vk6a2         104 DDLPLLPPPGTVARRLIEDTVAMCR  128 (131)
T ss_dssp             TSCCSCCCTTSHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCChHHHHHHHHHHHHHHH
Confidence            999887665554 456666665543

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.8e-21  Score=122.30  Aligned_cols=106  Identities=26%  Similarity=0.223  Sum_probs=78.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE--eeeCCCCCeeEEEEEEeEeccc-ccccccCCcceeEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN--FKSRAHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKW   77 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~--~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W   77 (121)
                      |.+|||++++|||+.+||+||++||||+.+..... ++.+.  +.....+......+|.+..... ....+.+|..+++|
T Consensus        43 W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W  121 (153)
T d1xsba_          43 WTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTI-IEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRW  121 (153)
T ss_dssp             EECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEE-CSSCCEEEEEESSSCEEEEEEEEEEESCTTCCCCCCTTEEEEEE
T ss_pred             EECCeeecCCCCCHHHHHHHHHHHHhCCccceeee-eccceeeecccccCceeEEEEEEEEEeecccccCCCcceeEEEE
Confidence            89999999999999999999999999999765444 44322  2222223333445555554443 23334468889999


Q ss_pred             EeHHHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           78 MSVAEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                      ++++++.+++.++.++.++..+.+.+..+.
T Consensus       122 ~~~~e~~~~~~~~~~~~iL~~~~~~L~~~~  151 (153)
T d1xsba_         122 LGLEEACQLAQFKEMKAALQEGHQFLCSIE  151 (153)
T ss_dssp             ECHHHHHHHTCSHHHHHHHHHHHHHHTTSS
T ss_pred             EEHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999998887653

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.84  E-value=5.7e-21  Score=121.27  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=73.7

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++|||+.+||+||++||||+.+..... ++.+.+... ...+...++|.+......  ....+..+++|+++
T Consensus        38 w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~  113 (155)
T d2b06a1          38 YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL-VGIKNWPLD-TGGRYIVICYKATEFSGT--LQSSEEGEVSWVQK  113 (155)
T ss_dssp             EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEE-EEEEEEECT-TSCEEEEEEEEECEEEEC--CCCBTTBEEEEEEG
T ss_pred             EECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEE-EEEEEeecC-CCCeEEEEEEEEEecCCc--cCCCchheEEEEEH
Confidence            88999999999999999999999999999988776 777665543 334455566666433322  22356778999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      ++++++...+.+..++..+...
T Consensus       114 ~el~~l~~~~~~~~~~~~~~~~  135 (155)
T d2b06a1         114 DQIPNLNLAYDMLPLMEMMEAP  135 (155)
T ss_dssp             GGGGGSCBCTTHHHHHHHHHCT
T ss_pred             HHhccCCCCchhHHHHHHHhCc
Confidence            9999987777777766665543

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.83  E-value=1.3e-20  Score=119.62  Aligned_cols=88  Identities=17%  Similarity=0.072  Sum_probs=67.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccc--cccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE--WPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~~~~e~~~~~W~   78 (121)
                      |.||||++++||++.+||+||++||||+.+..... ++.+.+..... .....++|.+........  .+.+|..+++|+
T Consensus        44 W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~  121 (158)
T d1sjya_          44 WHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF-LGAYLGRFPDG-VLILRHVWLAEPEPGQTLAPAFTDEIAEASFV  121 (158)
T ss_dssp             EECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEE-EEEEEEECTTS-CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEE
T ss_pred             EECCceecCCCCCHHHHHHHHHHHHhCccceeeEE-EEEEEEECCCC-CEEEEEEEEEEEcCCcccCCCCCcceEEEEEE
Confidence            89999999999999999999999999999988887 88876655433 334456666665543332  233678889999


Q ss_pred             eHHHHHHhcCch
Q 033333           79 SVAEARKVCQHW   90 (121)
Q Consensus        79 ~~~~l~~~~~~~   90 (121)
                      +++++.++...+
T Consensus       122 ~~~el~~l~~~~  133 (158)
T d1sjya_         122 SREDFAQLYAAG  133 (158)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             EHHHHhhhhhCC
Confidence            999999875433

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.8e-21  Score=121.11  Aligned_cols=99  Identities=16%  Similarity=0.009  Sum_probs=72.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.+|||++++|||+.+||+||++||||+++..... ++.+.+..........+++|.+....  ......+..+++|+++
T Consensus        32 W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ee~~~~W~~~  108 (156)
T d1irya_          32 WNGFGGKVQEGETIEDGARRELQEESGLTVDALHK-VGQIVFEFVGEPELMDVHVFCTDSIQ--GTPVESDEMRPCWFQL  108 (156)
T ss_dssp             EECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCE-EEEEEEEETTCSCEEEEEEECCCCBC--SCCCCCSSEEEEEEET
T ss_pred             EECcEeEecCCCCHHHHHHHHHHHHHCCcccceEE-EEEEEEEcCCCCEEEEEEEEEEEeec--CcccCCchhheEEeEH
Confidence            89999999999999999999999999999887776 77766666554444444444443222  2222345567899999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      ++++.+...+..+..++.+.+.
T Consensus       109 ~~l~~~~~~~~d~~~l~~~l~~  130 (156)
T d1irya_         109 DQIPFKDMWPDDSYWFPLLLQK  130 (156)
T ss_dssp             TCCCSTTTCSSHHHHHHHHHHT
T ss_pred             HHCCcCCCCccHHHHHHHHhCC
Confidence            9998876667777777776653

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.7e-21  Score=118.30  Aligned_cols=87  Identities=30%  Similarity=0.350  Sum_probs=62.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||++++|||+.+||+||++||||+.+....+ ++.+.+...  ......+.|.+.........+.++..+++|+++
T Consensus        39 W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~  115 (135)
T d2fvva1          39 WIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRL-VGIFENQER--KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKI  115 (135)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEE-EEEEEETTT--TEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEH
T ss_pred             EECCccccCCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEeeccC--CccEEEEEEEEEeecCCCCCCCCceeEEEEEEH
Confidence            89999999999999999999999999999988776 776654322  222233333333222222233456778999999


Q ss_pred             HHHHHhcCch
Q 033333           81 AEARKVCQHW   90 (121)
Q Consensus        81 ~~l~~~~~~~   90 (121)
                      +++.+++.+.
T Consensus       116 ~e~~~~l~~~  125 (135)
T d2fvva1         116 EDAIKVLQYH  125 (135)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHhcC
Confidence            9999987654

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.4e-20  Score=114.92  Aligned_cols=94  Identities=18%  Similarity=0.173  Sum_probs=69.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||+++.|||+.+||.||++||||+.+..... ++.+.+....  .....++|.+......  ....|..+++|+++
T Consensus        33 W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~E~~~~~W~~~  107 (129)
T d1puna_          33 LEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSL-FEKLEYEFPD--RHITLWFWLVERWEGE--PWGKEGQPGEWMSL  107 (129)
T ss_dssp             CBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCC-SEEEEEECSS--EEEEEEEEECCCCSSC--CCTTSSSCCEEECG
T ss_pred             EECCcceecCCCchhHHHHHHHHHHhCCcccccee-eeEEeecccc--cceeEEEEEEeeccCc--CCCCccceEEEEEH
Confidence            89999999999999999999999999999988776 7776665442  3344456665533322  22356778999999


Q ss_pred             HHHHHhcCchhHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRL   99 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~   99 (121)
                      +++..+...+.++++++.+
T Consensus       108 ~el~~~~~~~~~~~ii~~L  126 (129)
T d1puna_         108 VGLNADDFPPANEPVIAKL  126 (129)
T ss_dssp             GGCCTTTSCGGGHHHHHHH
T ss_pred             HHcccCCCCcchHHHHHHH
Confidence            9998776556666666654

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.81  E-value=9.4e-21  Score=119.20  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=69.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC-CCCeeEEEEEEeEeccc---------ccccccC
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA-HNTDYQGYMFPLLVQDQ---------LAEWPEK   70 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~~~~~---------~~~~~~~   70 (121)
                      |.||||++++||++.+||+||++||||+++..... +..+.+.... .........+.......         ......+
T Consensus        25 w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (152)
T d1k2ea_          25 YIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF-TYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGG  103 (152)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCC-CCCCBSSSEEECCCCSEEEEEEEECSSCEEEEEEEEEEEEEEEE
T ss_pred             EECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEE-EEEEeccccccCcceEEEEEEEEecCCCceEEEEEeEeeecCCC
Confidence            89999999999999999999999999999887665 4433221111 11111111111111110         0112235


Q ss_pred             CcceeEEEeHHHHHHhcCchhHHHHHHHHHHHhcc
Q 033333           71 NVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  105 (121)
Q Consensus        71 e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~  105 (121)
                      |..+++|++++++.++...+.++.++..+++.+.+
T Consensus       104 E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  138 (152)
T d1k2ea_         104 DLKNGEWIDVREIDRIETFPNVRKVVSLALSTLYR  138 (152)
T ss_dssp             CCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHHH
T ss_pred             CcceEEEeEHHHHhhCCCCHHHHHHHHHHHHHHhh
Confidence            77789999999999988888888888887776544

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.79  E-value=1.8e-20  Score=118.51  Aligned_cols=84  Identities=19%  Similarity=0.177  Sum_probs=53.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccc--cccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE--WPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~~~~e~~~~~W~   78 (121)
                      |.||||+++.||++.+||+||++||||+++..... ...+..... ... ...++|..........  ...+|..+++|+
T Consensus        29 W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~  105 (151)
T d2a6ta2          29 WGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN-PNEFIDMTI-RGQ-NVRLYIIPGISLDTRFESRTRKEISKIEWH  105 (151)
T ss_dssp             CBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCC-TTCEEEEEE-TTE-EEEEEEECCCCTTCCCC------EEEEEEE
T ss_pred             EECCcccccCCCCHHHHHHHHHHHHhCCCceeeee-cceEEeecc-cCc-eEEEEEEEEeccCCcccccCCCccceEEEE
Confidence            99999999999999999999999999998765443 333322222 222 2223333333332222  223577889999


Q ss_pred             eHHHHHHhc
Q 033333           79 SVAEARKVC   87 (121)
Q Consensus        79 ~~~~l~~~~   87 (121)
                      ++++++.+.
T Consensus       106 ~~~el~~~~  114 (151)
T d2a6ta2         106 NLMDLPTFK  114 (151)
T ss_dssp             EGGGSTTCC
T ss_pred             EHHHhhhhh
Confidence            999997753

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.6e-19  Score=115.01  Aligned_cols=88  Identities=27%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccccc-CCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPE-KNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~~   79 (121)
                      |.||||++|+||++++||+||+.||||+.+....  ++.+ +..+ +......++|.+.........++ +|..++.|++
T Consensus        52 ~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~~--l~~~-~~~~-g~~~~~~~~f~a~~~~~~~~~~d~~E~~ev~w~~  127 (158)
T d1v8ya_          52 LEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTY--LFSY-FVSP-GFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMR  127 (158)
T ss_dssp             BBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEEE--EEEE-ESCT-TTBCCEEEEEEEEEEEECC--------CEEEEEC
T ss_pred             EecchhhccccCCHHHHHHHHHHhhcCCcceeee--ecce-ecCC-CcceEEEEEEEEccccccccCCCCCeeEEEEEEE
Confidence            7899999999999999999999999999876433  4443 2222 22223446666654433333333 5777899999


Q ss_pred             HHHHHHhcCchhH
Q 033333           80 VAEARKVCQHWWM   92 (121)
Q Consensus        80 ~~~l~~~~~~~~~   92 (121)
                      ++++.+++.++.+
T Consensus       128 ~~e~~~~i~~g~i  140 (158)
T d1v8ya_         128 PEEALERHQRGEV  140 (158)
T ss_dssp             HHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCCC
Confidence            9999998665543

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.9e-19  Score=117.50  Aligned_cols=90  Identities=18%  Similarity=-0.005  Sum_probs=65.5

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccc-cCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~   79 (121)
                      |.||||++|+||++++||+||++||||+.+..... ++.+. ..+.. .....++|++.........+ ++|..++.|++
T Consensus        76 ~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~-l~~~~-~~~g~-~~~~~~~~~a~~~~~~~~~~de~E~~~~~~~~  152 (186)
T d1vhza_          76 LGFSKGLIDPGESVYEAANRELKEEVGFGANDLTF-LKKLS-MAPSY-FSSKMNIVVAQDLYPESLEGDEPEPLPQVRWP  152 (186)
T ss_dssp             EECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEE-CCTTT-CCCEEEEEEEEEEEECCCCCCCSSCCCEEEEE
T ss_pred             eecccccCCCCcCHHHHHHHHHHHHhcccccccee-cceee-ccccc-cceEEEEEEEEecccccCCCCCCcEEEEEEEe
Confidence            88999999999999999999999999999988777 77763 33222 22334555554332222223 36778899999


Q ss_pred             HHHHHHhcCchhHH
Q 033333           80 VAEARKVCQHWWMK   93 (121)
Q Consensus        80 ~~~l~~~~~~~~~~   93 (121)
                      ++++.+++.++.+.
T Consensus       153 ~~e~~~~i~~g~i~  166 (186)
T d1vhza_         153 LAHMMDLLEDPDFN  166 (186)
T ss_dssp             GGGGGGGGGCTTTC
T ss_pred             HHHHHHHHHcCCCC
Confidence            99999998766543

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1e-18  Score=110.98  Aligned_cols=88  Identities=19%  Similarity=0.314  Sum_probs=62.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecc-eeeeeEeeeCCC------CCeeEEEEEEeEecccccccccCCcc
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAH------NTDYQGYMFPLLVQDQLAEWPEKNVR   73 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~-~l~~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~e~~   73 (121)
                      |.+|||++++|||+.+||+||++||||+.+..... .++.+.+.....      ..+.+..+|.+.........+++|..
T Consensus        46 W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  125 (160)
T d1ryaa_          46 WFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHD  125 (160)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEE
T ss_pred             EecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccccccCCCcceEEEEEEEEEEecCCCccCCCcceE
Confidence            89999999999999999999999999999765332 144444333221      12334455666655555444557788


Q ss_pred             eeEEEeHHHHHHhcC
Q 033333           74 SRKWMSVAEARKVCQ   88 (121)
Q Consensus        74 ~~~W~~~~~l~~~~~   88 (121)
                      +++|++++++..+..
T Consensus       126 e~~W~~~~el~~~~~  140 (160)
T d1ryaa_         126 DYRWLTSDALLASDN  140 (160)
T ss_dssp             EEEEECHHHHHHCTT
T ss_pred             EEEEEEHHHhhcCcc
Confidence            899999999987644

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.76  E-value=2.3e-18  Score=110.13  Aligned_cols=102  Identities=17%  Similarity=0.182  Sum_probs=63.6

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecc-eeeeeEeee------------CCCCCeeEEEEEEeEecccc--c
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKS------------RAHNTDYQGYMFPLLVQDQL--A   65 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~-~l~~~~~~~------------~~~~~~~~~~~f~~~~~~~~--~   65 (121)
                      |.+|||+||+|||+++||+||++||||+.+..... ..+.+.+..            ..........+|.+......  .
T Consensus        40 W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (165)
T d1jkna_          40 WQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEI  119 (165)
T ss_dssp             EECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTC
T ss_pred             ccCccceEcCCCChhHHHHHHHHHhhccccccccccccccccccccceeeceeeeeecCCccceeeEEEEEEEeCCCcee
Confidence            89999999999999999999999999999765432 011111111            01111223344554433221  1


Q ss_pred             c-c----ccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHh
Q 033333           66 E-W----PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  103 (121)
Q Consensus        66 ~-~----~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~  103 (121)
                      . .    ...|..+++|++++++.+++. +.-++.++.+++.+
T Consensus       120 ~l~~~~~~~~E~~~~~W~~~~el~~~i~-~fk~~v~~~~l~~f  161 (165)
T d1jkna_         120 NLLGDGSEKPEFGEWSWVTPEQLIDLTV-EFKKPVYKEVLSVF  161 (165)
T ss_dssp             CSSCSSSSCCCEEEEEEECTTHHHHHSC-GGGHHHHHHHHHHT
T ss_pred             ecCCCCCCCCeeEEeEECCHHHHHHhcc-hhhHHHHHHHHHHH
Confidence            1 1    123777899999999999864 23356666666554

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=5.2e-18  Score=108.10  Aligned_cols=97  Identities=25%  Similarity=0.349  Sum_probs=67.3

Q ss_pred             CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.+| ||++++||++++||+||++||||++...... ++.+.+...  .......+|.+...... ....+|..+++|++
T Consensus        60 w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~Ev~~~~w~~  135 (161)
T d2fkba1          60 LDATAGGVVQADEQLLESARREAEEELGIAGVPFAE-HGQFYFEDK--NCRVWGALFSCVSHGPF-ALQEDEVSEVCWLT  135 (161)
T ss_dssp             EESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEE-EEEEEEEET--TEEEEEEEEEEECCCCC-CCCTTTEEEEEEEC
T ss_pred             ccccccccccccCcHHHHHHHHHHHHhCCccceeEE-EEEEEeecC--CcEEEEEEEEEEECCCC-cCChhHeeEEEEEe
Confidence            6565 9999999999999999999999999766665 776655433  23344556665543322 22336788899999


Q ss_pred             HHHHHHhcC--chhHHHHHHHHHH
Q 033333           80 VAEARKVCQ--HWWMKEALDRLVM  101 (121)
Q Consensus        80 ~~~l~~~~~--~~~~~~~~~~~~~  101 (121)
                      ++++..+..  .|....++...++
T Consensus       136 ~~el~~~~~~~~P~~~~al~~~~~  159 (161)
T d2fkba1         136 PEEITARCDEFTPDSLKALALWMK  159 (161)
T ss_dssp             HHHHHTTGGGBCHHHHHHHHHHHH
T ss_pred             HHHHhhhhhccCCcHHHHHHHHHh
Confidence            999988643  2555555555444

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.75  E-value=4.2e-19  Score=117.15  Aligned_cols=106  Identities=17%  Similarity=0.186  Sum_probs=72.8

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecc-eeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.||||+|++|||+.+||+||++||||+.+..... .+..+....+......+.++|.+...... ..+.+|..+++|++
T Consensus        70 W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~-~~~~~e~~~~~Wf~  148 (202)
T d2fmla2          70 WALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFN  148 (202)
T ss_dssp             EECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEECCCCC-CCCCTTEEEEEEEE
T ss_pred             EECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeeeeeecccCCccccceEEEEEEEEEeCCCC-cCCCcceeeEEEEe
Confidence            89999999999999999999999999998755432 03344333333334455566666554433 34456788899999


Q ss_pred             HHHHHHhcCc-----------------------hhHHHHHHHHHHHhcccc
Q 033333           80 VAEARKVCQH-----------------------WWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        80 ~~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~  107 (121)
                      +++++.....                       =+...++..++++++.+.
T Consensus       149 ld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LaFDH~~Ii~~Al~Rlr~k~  199 (202)
T d2fmla2         149 LERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKAFNRVVDKM  199 (202)
T ss_dssp             EEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHHHHHHHHHHHHHHT
T ss_pred             HHHCcchhcccchhhhhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHhh
Confidence            9998753210                       024577888888777654

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=1.8e-18  Score=114.05  Aligned_cols=90  Identities=18%  Similarity=0.123  Sum_probs=60.8

Q ss_pred             CccCCcccC-CCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccc--c-ccCCcceeE
Q 033333            1 MLFPKGGWE-IDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE--W-PEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve-~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~-~~~e~~~~~   76 (121)
                      |.||+|++| +||++++||+||++||||+.+..... ++.+. ... +......++|++........  . .+++..+++
T Consensus        67 welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~-l~~~~-~~~-g~~~~~~~~fla~~~~~~~~~~~~~eee~i~v~  143 (202)
T d1mqea_          67 WELPAGLLDVAGEPPHLTAARELREEVGLQASTWQV-LVDLD-TAP-GFSDESVRVYLATGLREVGRPEAHHEEADMTMG  143 (202)
T ss_dssp             EECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEE-EEEEC-SCT-TTBCCCEEEEEEEEEEECCC----------CEE
T ss_pred             EeccccccccCCCCHHHHHHHHHhhccccccccceE-eeeee-ccC-ccCCcEEEEEEEEeccccCCCCCCCccceEEEE
Confidence            889999999 79999999999999999999988777 77753 222 22223445666553322211  1 223455799


Q ss_pred             EEeHHHHHHhcCchhHH
Q 033333           77 WMSVAEARKVCQHWWMK   93 (121)
Q Consensus        77 W~~~~~l~~~~~~~~~~   93 (121)
                      |++++++.+++.++.+.
T Consensus       144 w~~~~e~~~~i~~G~I~  160 (202)
T d1mqea_         144 WYPIAEAARRVLRGEIV  160 (202)
T ss_dssp             EEEHHHHHHHHTTTSCC
T ss_pred             EEEHHHHHHHHHcCCCC
Confidence            99999999997655443

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.74  E-value=3.8e-18  Score=108.84  Aligned_cols=86  Identities=14%  Similarity=0.073  Sum_probs=61.8

Q ss_pred             CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333            1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS   79 (121)
Q Consensus         1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~   79 (121)
                      |.+| ||++++|||+.+||+||++||||+++..... +..+.+...........++|.+...... ....+|..+++|++
T Consensus        58 w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ev~~~~W~~  135 (162)
T d2o5fa1          58 LDVSVGGAVQSGETYEEAFRREAREELNVEIDALSW-RPLASFSPFQTTLSSFMCVYELRSDATP-IFNPNDISGGEWLT  135 (162)
T ss_dssp             BCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEE-EEEEEECTTTSSCSSEEEEEEEECSSCC-CCCTTTCSEEEEEC
T ss_pred             cccccCCcccCCCChhhhhhhhhhheeCcceeeEEE-EEEEEeccccccceEEEEEEEEecCCCc-cCChhHeeEEEEee
Confidence            6666 9999999999999999999999999876554 5554443333333445566666544332 22236778899999


Q ss_pred             HHHHHHhcC
Q 033333           80 VAEARKVCQ   88 (121)
Q Consensus        80 ~~~l~~~~~   88 (121)
                      ++++..++.
T Consensus       136 ~eel~~~~~  144 (162)
T d2o5fa1         136 PEHLLARIA  144 (162)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=4.6e-18  Score=112.55  Aligned_cols=89  Identities=20%  Similarity=0.114  Sum_probs=66.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc----cc-CCccee
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW----PE-KNVRSR   75 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----~~-~e~~~~   75 (121)
                      |++|+|.+|+||++++||+|||+||||+.+..... ++.+ +.++ +......++|++.+.......    .+ +|..++
T Consensus        92 lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~-l~~~-~~sp-g~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev  168 (209)
T d1g0sa_          92 LEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKP-VLSF-LASP-GGTSERSSIMVGEVDATTASGIHGLADENEDIRV  168 (209)
T ss_dssp             EECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEE-EEEE-ESCT-TTBCCEEEEEEEECCGGGCC--------CCSCEE
T ss_pred             EeeceeecCCCcCHHHHHHHHHHhhhcccccceee-cccc-ccCC-cccCCceEEEEEEEecccccCCCCCCCCCceeEE
Confidence            68999999999999999999999999999887776 7765 4433 333456677887755432211    12 466789


Q ss_pred             EEEeHHHHHHhcCchhH
Q 033333           76 KWMSVAEARKVCQHWWM   92 (121)
Q Consensus        76 ~W~~~~~l~~~~~~~~~   92 (121)
                      .|++++++.+++.++.+
T Consensus       169 ~~v~~~e~~~~i~~g~I  185 (209)
T d1g0sa_         169 HVVSREQAYQWVEEGKI  185 (209)
T ss_dssp             EEEEHHHHHHHHHTTSS
T ss_pred             EEEeHHHHHHHHHcCCC
Confidence            99999999998765543

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.71  E-value=5.5e-18  Score=110.49  Aligned_cols=83  Identities=23%  Similarity=0.187  Sum_probs=62.2

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc--cccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~   78 (121)
                      |.||||++|+||++.+||+||++||||+....... +|.+.......+  ..++.|++.+....  ....++|..++.|+
T Consensus        63 ~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~-lg~l~~~~~~~~--~~V~p~v~~l~~~~~~~~~~~~EV~~v~~v  139 (187)
T d1nqza_          63 IAFPGGSLDAGETPTQAALREAQEEVALDPAAVTL-LGELDDVFTPVG--FHVTPVLGRIAPEALDTLRVTPEVAQIITP  139 (187)
T ss_dssp             EECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEE-EEECCCEEETTT--EEEEEEEEEECGGGGGGCCCCTTEEEEECC
T ss_pred             EeCCccccccCCchhHHHHHHHHHhhccccceeEE-eecccceeeccc--cEEEEEEEEECCccccccccCCcceEEEec
Confidence            78999999999999999999999999999887777 887664433332  34555665554322  22334678889999


Q ss_pred             eHHHHHHh
Q 033333           79 SVAEARKV   86 (121)
Q Consensus        79 ~~~~l~~~   86 (121)
                      +++++...
T Consensus       140 pl~~L~~~  147 (187)
T d1nqza_         140 TLAELRAV  147 (187)
T ss_dssp             BHHHHHHS
T ss_pred             cHHHHhcC
Confidence            99999764

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.3e-17  Score=105.53  Aligned_cols=85  Identities=15%  Similarity=0.160  Sum_probs=57.1

Q ss_pred             Ccc-CCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCC---eeEEEEEEeEeccccccccc-CCccee
Q 033333            1 MLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPE-KNVRSR   75 (121)
Q Consensus         1 W~l-PgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~-~e~~~~   75 (121)
                      |.+ |||++++|||+.+||+||++||||+++.........+.|.......   ....++|.+......  .++ +|..++
T Consensus        32 w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Ev~~~  109 (153)
T d1hzta_          32 WTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSAL--QINDDEVMDY  109 (153)
T ss_dssp             EEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCEEEEECCEEEEEBCSCC--CCCTTTEEEE
T ss_pred             eecccCceeecCCcHHHHHHHHHHHHcCceeecccceeccccccccccccccceeEEEEEEEeeCCCc--cCChhheeEE
Confidence            444 9999999999999999999999999976544313333343332221   222344555443322  333 688899


Q ss_pred             EEEeHHHHHHhc
Q 033333           76 KWMSVAEARKVC   87 (121)
Q Consensus        76 ~W~~~~~l~~~~   87 (121)
                      +|++++++.+++
T Consensus       110 ~W~~~~el~~~i  121 (153)
T d1hzta_         110 QWCDLADVLHGI  121 (153)
T ss_dssp             EEECHHHHHHHH
T ss_pred             EEeeHHHHHHHH
Confidence            999999998764

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.6e-16  Score=106.95  Aligned_cols=105  Identities=13%  Similarity=0.042  Sum_probs=68.0

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecc--------------------eeeeeEeeeCCCCCeeEEEEEEeEe
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE--------------------LLGEWNFKSRAHNTDYQGYMFPLLV   60 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~--------------------~l~~~~~~~~~~~~~~~~~~f~~~~   60 (121)
                      |.||||+|++||++.+||+||+.||||+.+.....                    ..+.+....+..+......+|.+..
T Consensus       152 WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprntd~aw~etva~~~h~  231 (292)
T d1q33a_         152 WAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHD  231 (292)
T ss_dssp             EECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEE
T ss_pred             EeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCCCCCCEEEEEEEEEEE
Confidence            89999999999999999999999999998654321                    0111111111112233445565554


Q ss_pred             cccc-----cccccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHhcccc
Q 033333           61 QDQL-----AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ  107 (121)
Q Consensus        61 ~~~~-----~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (121)
                      ....     ...+.+|..+++|++++++..|..+  ...+++.+.+++....
T Consensus       232 ~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L~~~--H~~il~~aa~~~~Ah~  281 (292)
T d1q33a_         232 ETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYAS--HSQFIKLVAEKRDAHW  281 (292)
T ss_dssp             SSSTTTTTCCCCCCTTCSEEEEEECCTTCCCSTT--HHHHHHHHHHHHTCCC
T ss_pred             cccccccccccCCCCchheEEEEEhhccccchhh--HHHHHHHHHHHHhccc
Confidence            4321     1223467888999999998876543  4577777777765433

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.3e-15  Score=99.24  Aligned_cols=89  Identities=15%  Similarity=0.003  Sum_probs=63.4

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc----ccCCcceeE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW----PEKNVRSRK   76 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----~~~e~~~~~   76 (121)
                      |.+|||.++ ||++++||+||++||||+.+..... ++.+ |.++ +.....+++|++.........    .++|..++.
T Consensus        79 ~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~-lg~~-~~sp-G~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~  154 (189)
T d1viua_          79 IESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRK-LFEL-YMSP-GGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVL  154 (189)
T ss_dssp             EECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEE-EEEE-ESCT-TTBCCEEEEEEEECCTTCC---------CCEEEE
T ss_pred             ecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEE-ccee-ecCc-cccCceEEEEEEEECCcccccCCCCCCCccEEEE
Confidence            468899887 6678999999999999999887776 8875 4444 233355678887755432211    125677899


Q ss_pred             EEeHHHHHHhcCchhHH
Q 033333           77 WMSVAEARKVCQHWWMK   93 (121)
Q Consensus        77 W~~~~~l~~~~~~~~~~   93 (121)
                      |++++++.+++.++.+.
T Consensus       155 ~~~~~e~~~~i~~g~i~  171 (189)
T d1viua_         155 ELPFSQALEMIKTGEIR  171 (189)
T ss_dssp             EEEHHHHHHHHHHTSCC
T ss_pred             EEEHHHHHHHHHcCCCC
Confidence            99999999987666554

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.53  E-value=1.5e-14  Score=88.46  Aligned_cols=93  Identities=10%  Similarity=-0.036  Sum_probs=65.1

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV   80 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~   80 (121)
                      |.||||.++++++ .+++.||++||+|+++..... ++.+.+..++  ......+|.+......     .+..+.+|+++
T Consensus        33 WefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~-l~~~~H~fsh--~~~~~~~~~~~~~~~~-----~~~~~~~Wv~~  103 (127)
T d1rrqa2          33 WEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEP-IVSFEHAFSH--LVWQLTVFPGRLVHGG-----PVEEPYRLAPE  103 (127)
T ss_dssp             EECCEEECTTTCC-HHHHHHTTC----CEEEECSC-CEEEEEECSS--EEEEEEEEEEEEECCS-----CCCTTEEEEEG
T ss_pred             eecccccccCCCC-HHHHHHHhhhhcceEEEeccc-cccceEecCC--eEEEEEEEEEEECCCC-----ccccceEEeeH
Confidence            8999999997777 789999999999999988887 8887765542  2234456666654322     12346899999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHH
Q 033333           81 AEARKVCQHWWMKEALDRLVMR  102 (121)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~  102 (121)
                      +++.++..+..++.+++.+.+.
T Consensus       104 ~el~~~~~p~~~~Ki~~~~~~~  125 (127)
T d1rrqa2         104 DELKAYAFPVSHQRVWREYKEW  125 (127)
T ss_dssp             GGGGGSCCCHHHHHHHHHHHHH
T ss_pred             HHHhHCCCChHHHHHHHHHHHh
Confidence            9999987777777777665543

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.43  E-value=6.9e-14  Score=91.28  Aligned_cols=84  Identities=15%  Similarity=0.072  Sum_probs=54.3

Q ss_pred             CccCCcccCCCCC-HHHHHHHHHHHHhCceeeeecceeee--eEeeeCCCCCeeEEEEEEeEecccc---------cccc
Q 033333            1 MLFPKGGWEIDES-IQEAALRETIEEAGVTGIVECELLGE--WNFKSRAHNTDYQGYMFPLLVQDQL---------AEWP   68 (121)
Q Consensus         1 W~lPgG~ve~gE~-~~eaa~REl~EEtG~~~~~~~~~l~~--~~~~~~~~~~~~~~~~f~~~~~~~~---------~~~~   68 (121)
                      |.||||++++||+ +++||.||+.||||+.+....+ +..  +...........+.++|...+....         ....
T Consensus        55 ~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l-~~~~~~~~~~~~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~  133 (196)
T d1u20a1          55 LGFPGGFVDTRDISLEEGLKRELEEELGPALATVEV-TEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKD  133 (196)
T ss_dssp             EECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCC-CGGGEEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTT
T ss_pred             EECCccccCCCCCcHHHHHHHHHHHHhCccceeEEE-EeeEEEEeccCCCCCEEEEEEEEEEcchHHhhhhhhcccccCc
Confidence            8999999999996 6789999999999999876554 332  2111122223345566666543211         1111


Q ss_pred             -cCCcceeEEEeHHHHHH
Q 033333           69 -EKNVRSRKWMSVAEARK   85 (121)
Q Consensus        69 -~~e~~~~~W~~~~~l~~   85 (121)
                       ..|..++.|+++.++.+
T Consensus       134 ~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1         134 HGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             BTTTEEEEEECCCSBCTT
T ss_pred             CCccccceeEEeHHHhcc
Confidence             14667889999887754

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.5e-10  Score=71.25  Aligned_cols=95  Identities=18%  Similarity=0.188  Sum_probs=63.9

Q ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333            1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM   78 (121)
Q Consensus         1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~   78 (121)
                      |+||+|.++.+|+..++|.|+..+|.+..+..  ... ++.+.+..+  +.....++|.+.+......  ..+..+.+|+
T Consensus        44 WefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~-~~~v~H~fs--H~~~~~~v~~~~~~~~~~~--~~~~~~~~W~  118 (142)
T d1x51a1          44 WEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRH-LGEVVHTFS--HIKLTYQVYGLALEGQTPV--TTVPPGARWL  118 (142)
T ss_dssp             EECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEE-CCCBCCBCS--SCEEEEEEEEEECSSCCCC--CCCCTTEEEE
T ss_pred             eeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeee-eccceeccC--CcceEEEEEEEEEeCCCcc--cccCccCEEe
Confidence            89999999999999988877766666554333  233 454444332  3334456777776654322  2455678999


Q ss_pred             eHHHHHHhcCchhHHHHHHHHH
Q 033333           79 SVAEARKVCQHWWMKEALDRLV  100 (121)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~~  100 (121)
                      +++++.++.....++.+++.+.
T Consensus       119 ~~~el~~~~lp~~~~Kil~~~~  140 (142)
T d1x51a1         119 TQEEFHTAAVSTAMKKVFRVYQ  140 (142)
T ss_dssp             EHHHHHHSCCCHHHHHHHHHHH
T ss_pred             eHHHccccCCCHHHHHHHHHHh
Confidence            9999999877776666666554