Citrus Sinensis ID: 033347

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrwgvaagRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAagvnivpsMNVIYVIFGTLVS
Flexible Loop (DISEMBL)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVS
Low Complexity Region (SEG)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVS
Disordered region (IsUnstruct)
***GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTL**
Disordered Region (DISOPRED)
*******GRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVS
Disordered Region (DISEMBL)
********RKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVS
Disordered Region (DISPRO)
*RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
224099213	306	predicted protein [Populus trichocarpa]	0.991	0.392	0.825	4e-51
255546947	306	conserved hypothetical protein [Ricinus	0.991	0.392	0.8	3e-50
449499494	469	PREDICTED: uncharacterized LOC101204847	0.991	0.255	0.783	6e-48
449446255	301	PREDICTED: uncharacterized protein LOC10	0.991	0.398	0.783	1e-47
356499992	287	PREDICTED: uncharacterized protein LOC10	0.991	0.418	0.741	2e-45
225423785	286	PREDICTED: uncharacterized protein LOC10	0.991	0.419	0.733	3e-45
297737924	192	unnamed protein product [Vitis vinifera]	0.991	0.625	0.733	5e-45
357496929	247	Membrane protein [Medicago truncatula] g	0.991	0.485	0.725	2e-44
297851064	293	hypothetical protein ARALYDRAFT_890129 [	0.991	0.409	0.675	7e-43
22329794	289	uncharacterized protein [Arabidopsis tha	0.991	0.415	0.675	2e-42

>gi|224099213|ref|XP_002311406.1| predicted protein [Populus trichocarpa] gi|222851226|gb|EEE88773.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 111/120 (92%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           +RWGVA GRKTMVATAMLL VLSGPVKAL YLLTHG++GF+MGSLWR+G +WGLSIFLCT
Sbjct: 149 LRWGVAGGRKTMVATAMLLFVLSGPVKALTYLLTHGLVGFTMGSLWRMGANWGLSIFLCT 208

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           IAR+ GA+GY+LTSSFLIRENILALITINIHASLTFIF+AAG+N VPSMN IY +FG LV
Sbjct: 209 IARATGAVGYVLTSSFLIRENILALITINIHASLTFIFAAAGINTVPSMNFIYSLFGILV 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546947|ref|XP_002514531.1| conserved hypothetical protein [Ricinus communis] gi|223546135|gb|EEF47637.1| conserved hypothetical protein [Ricinus communis]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/120 (80%), Positives = 108/120 (90%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGVAAGRKTMVATAMLL VLSGP+KAL YLLTHG++GF+MGSLWRL  DWGLSIFLCT
Sbjct: 148 MRWGVAAGRKTMVATAMLLFVLSGPLKALTYLLTHGIVGFTMGSLWRLRADWGLSIFLCT 207

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           IAR+ GAMGY+  +SFLIRENILALITINIHASLT IF+A G+N +PSMN+IY +FG LV
Sbjct: 208 IARATGAMGYVFVTSFLIRENILALITINIHASLTLIFAAIGINTIPSMNLIYTLFGILV 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499494|ref|XP_004160832.1| PREDICTED: uncharacterized LOC101204847 [Cucumis sativus]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 107/120 (89%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWG++AGRKTMVAT +LLLVLSGPVKAL YLL HG++GF+MGSLWRLG +W  SIFLCT
Sbjct: 312 MRWGISAGRKTMVATFLLLLVLSGPVKALTYLLRHGLVGFTMGSLWRLGANWSTSIFLCT 371

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           I R+ GA+GY+L SSFLIRENILALITINIHASLT IF+A GVN++PSMN IY IFGTLV
Sbjct: 372 IVRAFGAVGYVLVSSFLIRENILALITINIHASLTLIFTAWGVNLIPSMNAIYAIFGTLV 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446255|ref|XP_004140887.1| PREDICTED: uncharacterized protein LOC101204847 [Cucumis sativus]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 107/120 (89%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWG++AGRKTMVAT +LLLVLSGPVKAL YLL HG++GF+MGSLWRLG +W  SIFLCT
Sbjct: 144 MRWGISAGRKTMVATFLLLLVLSGPVKALTYLLRHGLVGFTMGSLWRLGANWSTSIFLCT 203

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           I R+ GA+GY+L SSFLIRENILALITINIHASLT IF+A GVN++PSMN IY IFGTLV
Sbjct: 204 IVRAFGAVGYVLVSSFLIRENILALITINIHASLTLIFTAWGVNLIPSMNAIYAIFGTLV 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499992|ref|XP_003518819.1| PREDICTED: uncharacterized protein LOC100783446 [Glycine max]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 104/120 (86%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGV AGRKT+VAT +LLLVLSGPVKAL YLL HG++GF+MG+LWR G  W +SIFLCT
Sbjct: 130 MRWGVDAGRKTLVATTILLLVLSGPVKALTYLLKHGIVGFTMGTLWRTGASWNMSIFLCT 189

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           I R+ GA+G++L SSFLIRENILALITINIHASLTF+ +AAGV  +PSMNVIY +FG LV
Sbjct: 190 IVRALGAVGFVLISSFLIRENILALITINIHASLTFLLTAAGVTSIPSMNVIYTLFGILV 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423785|ref|XP_002279949.1| PREDICTED: uncharacterized protein LOC100256033 isoform 1 [Vitis vinifera]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 105/120 (87%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGVAAGRKTMVAT MLL VLSGPVKA  YLL HG++G +MGSLWRLG +WGLSI LCT
Sbjct: 129 MRWGVAAGRKTMVATTMLLFVLSGPVKASTYLLLHGLVGLTMGSLWRLGANWGLSICLCT 188

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
             R+ GAMGY+L SSFLIRENILALIT+N+HAS+T++F+A GVN +PSM++IY +FGTL+
Sbjct: 189 FVRAMGAMGYVLISSFLIRENILALITLNVHASITYMFTAIGVNTIPSMDLIYALFGTLL 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737924|emb|CBI27125.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 105/120 (87%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGVAAGRKTMVAT MLL VLSGPVKA  YLL HG++G +MGSLWRLG +WGLSI LCT
Sbjct: 35  MRWGVAAGRKTMVATTMLLFVLSGPVKASTYLLLHGLVGLTMGSLWRLGANWGLSICLCT 94

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
             R+ GAMGY+L SSFLIRENILALIT+N+HAS+T++F+A GVN +PSM++IY +FGTL+
Sbjct: 95  FVRAMGAMGYVLISSFLIRENILALITLNVHASITYMFTAIGVNTIPSMDLIYALFGTLL 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496929|ref|XP_003618753.1| Membrane protein [Medicago truncatula] gi|355493768|gb|AES74971.1| Membrane protein [Medicago truncatula]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 102/120 (85%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWG+ AGRKTMVAT +LL VLSGPVKAL YLL HG++G++MG+LWRL   W LS+FLC 
Sbjct: 90  MRWGIDAGRKTMVATTILLFVLSGPVKALTYLLKHGIVGYTMGTLWRLETSWSLSVFLCA 149

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           I RS GA+G++L SSFLIRENILALITINIHASLTF+ +AAGVN +PSMN IY +FG LV
Sbjct: 150 IVRSIGAVGFVLISSFLIRENILALITINIHASLTFVLTAAGVNSIPSMNFIYTLFGILV 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851064|ref|XP_002893413.1| hypothetical protein ARALYDRAFT_890129 [Arabidopsis lyrata subsp. lyrata] gi|297339255|gb|EFH69672.1| hypothetical protein ARALYDRAFT_890129 [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 106/120 (88%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLWR+G  W LSIF+CT
Sbjct: 136 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWRMGASWRLSIFVCT 195

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           + R+ G +GY+LTSSFLIRENILA+ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct: 196 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 255

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329794|ref|NP_173943.2| uncharacterized protein [Arabidopsis thaliana] gi|18252157|gb|AAL61911.1| unknown protein [Arabidopsis thaliana] gi|21386935|gb|AAM47871.1| unknown protein [Arabidopsis thaliana] gi|332192537|gb|AEE30658.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 105/120 (87%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLW +G  W LSIFLCT
Sbjct: 132 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWSMGASWRLSIFLCT 191

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           + R+ G +GY+LTSSFLIRENILA+ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct: 192 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2028815	289	AT1G26180 [Arabidopsis thalian	0.991	0.415	0.675	5.7e-43

TAIR|locus:2028815 AT1G26180 [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 81/120 (67%), Positives = 105/120 (87%)

Query:     1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
             +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLW +G  W LSIFLCT
Sbjct:   132 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWSMGASWRLSIFLCT 191

Query:    61 IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
             + R+ G +GY+LTSSFLIRENILA+ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct:   192 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 251


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.140   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 22  0.38    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  110 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.56u 0.17s 10.73t   Elapsed:  00:00:01
  Total cpu time:  10.56u 0.17s 10.73t   Elapsed:  00:00:01
  Start:  Sat May 11 00:03:19 2013   End:  Sat May 11 00:03:20 2013

GO:0009507 "chloroplast" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00081028	hypothetical protein (306 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00101071	hypothetical protein (328 aa)			•						0.488
	estExt_Genewise1_v1.C_LG_X2901	hypothetical protein (169 aa)			•						0.476
	estExt_Genewise1_v1.C_LG_XII0506	hypothetical protein (155 aa)			•						0.466
	estExt_fgenesh4_pg.C_400233	hypothetical protein (208 aa)			•						0.465
	gw1.VIII.1120.1	hypothetical protein (94 aa)			•						0.458
	gw1.X.280.1	hypothetical protein (95 aa)			•						0.457
	gw1.226.9.1	annotation not avaliable (156 aa)			•						0.451
	gw1.IV.3225.1	hypothetical protein (87 aa)			•						0.435
	estExt_Genewise1_v1.C_LG_V0741	photosystem II protein Psb27 (175 aa)			•						0.428
	cemA	RecName- Full=Chloroplast envelope membrane protein;; May be involved in proton extrusion. Indi [...] (221 aa)			•						0.426

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
PF09991	290	DUF2232: Predicted membrane protein (DUF2232); Int	99.36
COG4241	314	Predicted membrane protein [Function unknown]	99.08
TIGR02357	183	thia_yuaJ probable proton-coupled thiamine transpo	95.9
PF09515	177	Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ	92.43
TIGR02359	160	thiW thiW protein. Levels of thiamine pyrophosphat	83.34
COG4241	314	Predicted membrane protein [Function unknown]	81.28
PF07155	169	ECF-ribofla_trS: ECF-type riboflavin transporter,	80.4

>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan

Probab=99.36  E-value=1.8e-11  Score=95.60  Aligned_cols=101  Identities=32%  Similarity=0.529  Sum_probs=97.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033347            1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRE   80 (121)
Q Consensus         1 lR~G~raa~~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~ge   80 (121)
                      +|||.|.+..+.++++++...+.||..+..+.+.+++.|+.+|++.||++|+..++..++.+..++....+.+.+...|+
T Consensus        33 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  112 (290)
T PF09991_consen   33 LRYGLKYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGI  112 (290)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHc
Q 033347           81 NILALITINIHASLTFIFSAA  101 (121)
Q Consensus        81 Nl~~~~~~~~~~~Ld~~~~~l  101 (121)
                      |+.++..+++++..|+.....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~  133 (290)
T PF09991_consen  113 NIFEQLIEQIQESIEQVLKIY  133 (290)
T ss_pred             ChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887655

>COG4241 Predicted membrane protein [Function unknown]

Probab=99.08  E-value=3e-11  Score=100.18  Aligned_cols=113  Identities=13%  Similarity=0.071  Sum_probs=106.4

Q ss_pred             CcchhHHHHHHHHHHH---------HHHHH----HhhhhHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHH
Q 033347            1 MRWGVAAGRKTMVATA---------MLLLV----LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGA   67 (121)
Q Consensus         1 lR~G~raa~~~~vvt~---------lLL~v----L~GPlral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~   67 (121)
                      +||+.+++++.+..+|         +..++    .+||.|...+..+|+.++...|.+|-||.+|..+...+.....++.
T Consensus       136 ~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~~v~~~~p~~~~~f~~  215 (314)
T COG4241         136 LRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKIKVPIFLPFRNWTFPN  215 (314)
T ss_pred             HHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCccCCCccceeeEeech
Confidence            4999999999999999         99999    9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHcC--CCCCC--CHHHHH
Q 033347           68 MGYILTSSFLIRENILALITINIHASLTFIFSAAG--VNIVP--SMNVIY  113 (121)
Q Consensus        68 ~~~v~l~s~L~geNl~~~~~~~~~~~Ld~~~~~lg--~~~~P--~~~~v~  113 (121)
                      .++++..+++++||+|++...|+.++.+|-+...+  +..+|  |.-..|
T Consensus       216 ~fl~~ylivv~~~~l~~~~~gqv~~~I~wnfl~vl~l~l~iqGlSvI~~y  265 (314)
T COG4241         216 SFLFWYLIVVCLELLWKYENGQVTYSIYWNFLMVLGLLLAIQGLSVIFFY  265 (314)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhccccceeeeh
Confidence            99999999999999999999999999999999888  77777  444333

>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ

Probab=95.90  E-value=0.3  Score=37.73  Aligned_cols=97  Identities=19%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHH-----hhhhHHHH-HHHHHHHHHHHhHHHhhcCC---------chHHHHHHHHHHHHH
Q 033347            1 MRWGVAAGRKTMVATAMLLLVL-----SGPVKALA-YLLTHGVLGFSMGSLWRLGV---------DWGLSIFLCTIARSA   65 (121)
Q Consensus         1 lR~G~raa~~~~vvt~lLL~vL-----~GPlral~-~l~~~GllGl~LG~~w~~~~---------sw~~si~~gal~~~~   65 (121)
                      .|||.|+|.....+.|++=.+.     ..|++.+. |.++|+++|+ -|...|+..         +=...+..|++++++
T Consensus        44 ~~~Gp~~G~~~G~i~Gll~~~~g~~~~~~p~q~~ldy~~a~~~iGl-aGl~~~~~~k~~~~~~~~~~~~~i~~g~iv~~~  122 (183)
T TIGR02357        44 FRRGLKAGLVAGLIWGLLKIILGTAYILHPVQVLLDYILAFMALGL-AGVFRIKKKLAFQSNTKKKAIVKIILGSLVASL  122 (183)
T ss_pred             HHHccHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchhhHHHHHHHHHHHHHH
Confidence            3899999999999888766554     22557666 8999999999 777776542         224555666666555


Q ss_pred             HHHHHHHHHHHH-------hhccHHHHH--HHHHHHHHHHHH
Q 033347           66 GAMGYILTSSFL-------IRENILALI--TINIHASLTFIF   98 (121)
Q Consensus        66 g~~~~v~l~s~L-------~geNl~~~~--~~~~~~~Ld~~~   98 (121)
                      .......++-.+       -|.|+|.|.  .+..+...|.++
T Consensus       123 ~r~~~~~i~g~iffg~yAp~g~~~~~ysl~yn~~~~~~e~ii  164 (183)
T TIGR02357       123 LRYFWHFIAGVIFWGSYAPKGMSAWLYSLIYNGSSALVEALI  164 (183)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence            444443333332       367888543  334444444443

Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.

>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis

Probab=92.43  E-value=1.2  Score=34.44  Aligned_cols=82  Identities=27%  Similarity=0.222  Sum_probs=43.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhh------hHHH-HHHHHHHHHHHHhHHHhhc-------C---CchHHHHHHHHHHH
Q 033347            1 MRWGVAAGRKTMVATAMLLLVLSGP------VKAL-AYLLTHGVLGFSMGSLWRL-------G---VDWGLSIFLCTIAR   63 (121)
Q Consensus         1 lR~G~raa~~~~vvt~lLL~vL~GP------lral-~~l~~~GllGl~LG~~w~~-------~---~sw~~si~~gal~~   63 (121)
                      .|||.|+|..+..+.|++=. +.||      .+.+ =|.++|+.+|+  ...+++       +   .+=...+..|++++
T Consensus        40 ~r~G~~~G~~~G~l~Gll~~-~~g~~~~~~p~q~llDY~laf~~lGl--aGlf~~~~~~~~~~~~~~~~~~~i~~g~~i~  116 (177)
T PF09515_consen   40 FRRGWKAGILAGFLYGLLQF-LLGPAYIVHPVQVLLDYPLAFGALGL--AGLFAKPLQKTLKNNRYKKSYLNIILGTFIA  116 (177)
T ss_dssp             HHH-HHHHHHHHHHHHHHHH-HTT-S--SSHHHHHHHHTHHHHHGGG--GGGG-----------SSS--HHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHHHH-HhCCceehhHHHHHHHHHHHHHHHHH--HHhcccccchhhhhcccchhHHHHHHHHHHH
Confidence            39999999999999998544 4665      3433 36788888887  445555       1   22333444555554


Q ss_pred             HHHHHHHHH-------HHHHHhhccHHHH
Q 033347           64 SAGAMGYIL-------TSSFLIRENILAL   85 (121)
Q Consensus        64 ~~g~~~~v~-------l~s~L~geNl~~~   85 (121)
                      ....++.=.       -++---|.|||.|
T Consensus       117 ~~~r~~~h~isGvif~~~yAp~g~~~~~Y  145 (177)
T PF09515_consen  117 VFLRYFCHFISGVIFFGSYAPEGMNPWLY  145 (177)
T ss_dssp             HHHHHHHHHHHHHHH-GGG--TT--HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCcccHHHH
Confidence            333322222       2233357899865

Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.

>TIGR02359 thiW thiW protein

Probab=83.34  E-value=18  Score=27.59  Aligned_cols=77  Identities=13%  Similarity=0.039  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Q 033347            4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRL-GVDWGLSIFLCTIARSAGAMGYILTSSFLIRENI   82 (121)
Q Consensus         4 G~raa~~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~~-~~sw~~si~~gal~~~~g~~~~v~l~s~L~geNl   82 (121)
                      |+.+|.....++.++-..+ | .-++.+...+-+.++.-|..+|| +..++..+....-++.+|.....-+.-+++|.+.
T Consensus        46 GP~~g~~~a~i~~ll~~l~-~-~g~~~afpg~~~~a~laGliyrk~~~~~~a~~ge~igt~iig~~~s~pi~~~~~g~~~  123 (160)
T TIGR02359        46 GPWYALAVAFIIGLLRNTL-G-LGTVLAFPGGMPGALLAGLLYRFGRKHYWASLGEILGTGIIGSLLAYPVAAWLLGSSE  123 (160)
T ss_pred             chHHHHHHHHHHHHHHHHh-C-CCchHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            7777777777777777664 3 22233344555678888888887 5677778888888999999999999999999643

Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.

>COG4241 Predicted membrane protein [Function unknown]

Probab=81.28  E-value=1.4  Score=37.30  Aligned_cols=96  Identities=16%  Similarity=0.087  Sum_probs=74.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 033347            2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAM-GYILTSSFLIRE   80 (121)
Q Consensus         2 R~G~raa~~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~-~~v~l~s~L~ge   80 (121)
                      |||.|-+.+-..++ ..-.++.+|--....-+.++.=|+.+|...||..+...-+.-++.+.++-.. +++-++=.+.+.
T Consensus        48 k~g~k~~v~~~~v~-~~~~~~i~~~~l~~v~l~~~~p~vv~~~~~kr~e~~f~i~~~~s~~amiwi~~~yF~ls~~~~~i  126 (314)
T COG4241          48 KHGLKHGVEVLIVA-VGVVILIDSKALLLVALMFLIPGVVMGILLKRVEKAFAIMSGASTAAMIWIINFYFPLSIVIRII  126 (314)
T ss_pred             HhccchhhheeeEe-eeeeEEecchHHHHHHHHHhCchhhhhHHHHhccchhhHHhhHHHHHHHHHHHHHHHhhhhhccc
Confidence            77887766644433 3344456677777777888889999999999988888877777888888888 777788888899


Q ss_pred             cHHHHHHHHHHHHHHHHH
Q 033347           81 NILALITINIHASLTFIF   98 (121)
Q Consensus        81 Nl~~~~~~~~~~~Ld~~~   98 (121)
                      ||..-...+..++++-.-
T Consensus       127 npv~~a~~~~Rqsl~~a~  144 (314)
T COG4241         127 NPVDDAVVYLRQSLNAAI  144 (314)
T ss_pred             CCcHHHHHHHHhhhHHHH
Confidence            999888888888776543

>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins

Probab=80.40  E-value=20  Score=26.16  Aligned_cols=47  Identities=26%  Similarity=0.351  Sum_probs=34.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhHHHhhcC
Q 033347            3 WGVAAGRKTMVATAMLLLVLSGP-VKALAYLLTHGVLGFSMGSLWRLG   49 (121)
Q Consensus         3 ~G~raa~~~~vvt~lLL~vL~GP-lral~~l~~~GllGl~LG~~w~~~   49 (121)
                      -|++.|-....++..+--.+.|- .-.+.+.+.+|+.|+..|..++|.
T Consensus        49 ~Gp~~G~ivg~ig~~l~dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~   96 (169)
T PF07155_consen   49 FGPKYGAIVGAIGDLLSDLLSGYGPWAPFTMISKGLMGFIAGLIFRKK   96 (169)
T ss_pred             HChHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHh
Confidence            36777766666666666665543 344555899999999999999987

The function of this family is unknown.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3rlb_A	192	THIT; S-component, ECF transporter, ABC transporte	96.31
3p5n_A	189	RIBU, riboflavin uptake protein; transporter, alph	93.15

>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}

Probab=96.31  E-value=0.017  Score=43.97  Aligned_cols=84  Identities=18%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhh-----hhHH-HHHHHHHHHHHHHhHHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHH
Q 033347            2 RWGVAAGRKTMVATAMLLLVLSG-----PVKA-LAYLLTHGVLGFSMGSLWRLGVDW-GLSIFLCTIARSAGAMGYILTS   74 (121)
Q Consensus         2 R~G~raa~~~~vvt~lLL~vL~G-----Plra-l~~l~~~GllGl~LG~~w~~~~sw-~~si~~gal~~~~g~~~~v~l~   74 (121)
                      |+|+|+|.....+.+++=.+.-+     |++. +-|.++|+.+|+. |..++|+.+= .+....|+++++++..+.-.++
T Consensus        60 ~~Gp~~G~~~g~i~gll~~i~g~~~~~~p~q~lldy~laf~~~Gla-G~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~is  138 (192)
T 3rlb_A           60 RRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIA-GLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIA  138 (192)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHTTCSCCSSHHHHHHHHTHHHHHGGGG-GGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHChHHHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHH-HhheeccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999998887544433     4554 4568899999998 8888875542 2445556666555544433344


Q ss_pred             HH-Hh------hccHHHHH
Q 033347           75 SF-LI------RENILALI   86 (121)
Q Consensus        75 s~-L~------geNl~~~~   86 (121)
                      .. +.      |-|||.|-
T Consensus       139 gvvff~~yaP~g~~~~~yS  157 (192)
T 3rlb_A          139 GIIFWSQYAWKGWGAVAYS  157 (192)
T ss_dssp             HHHHCGGGCCTTCCHHHHH
T ss_pred             HHHHHHhhCcccCcHHHHH
Confidence            32 22      56898764

>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}

Probab=93.15  E-value=0.75  Score=34.00  Aligned_cols=55  Identities=18%  Similarity=0.212  Sum_probs=44.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhHHHhhcCCchHHHH
Q 033347            2 RWGVAAGRKTMVATAMLLLVLSG--PVKALAYLLTHGVLGFSMGSLWRLGVDWGLSI   56 (121)
Q Consensus         2 R~G~raa~~~~vvt~lLL~vL~G--Plral~~l~~~GllGl~LG~~w~~~~sw~~si   56 (121)
                      ..|+++|.....+..++-..+.|  |.-.+.-.+..+..|+.-|+.+||+.+++..+
T Consensus        57 ~~Gp~~g~~~~~l~~ll~~l~~g~~~~g~~~~~l~~~~~g~~~~~~y~k~~~~~~~~  113 (189)
T 3p5n_A           57 TFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLI  113 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHSSSCSHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            46899999999999888877754  66666667778899988899999998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00