Citrus Sinensis ID: 033384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MVMGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEccccHHHHHHHHccccccccccEEEEEEccccccccccHHHHHHHccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHcccccccccEEEEccEccccccEHHHHHHHHccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
mvmgkvksfktEHSFDERLEESKAIVakypdrvpviiekysrtdlpdmektkylvprdmsmGHFIYILSsrlhlepgkALFVFVNntlpqtasrMDSIYKSFKDADGFLYMCYSTEKTFG
Flexible Loop (DISEMBL)
mvmgkvksfktehsfderLEESkaivakypdrvpviiekysrtdlpdmekTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG
Low Complexity Region (SEG)
MVMGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG
Disordered region (IsUnstruct)
***********************AIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS******
Disordered Region (DISOPRED)
******K*****HSFDERLEESKAIVAKYPDRVPVII**********MEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG
Disordered Region (DISEMBL)
*****************RLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG
Disordered Region (DISPRO)
***********EHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVMGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
Q8S925	119	Autophagy-related protein	yes	no	0.958	0.966	0.765	9e-49
Q9LRP7	115	Autophagy-related protein	no	no	0.958	1.0	0.730	2e-47
Q2RBS4	118	Autophagy-related protein	yes	no	0.966	0.983	0.658	7e-42
Q8H715	116	Autophagy-related protein	N/A	no	0.941	0.974	0.548	2e-34
Q6Z1D5	120	Autophagy-related protein	yes	no	0.941	0.941	0.548	4e-33
A2YS06	120	Autophagy-related protein	N/A	no	0.941	0.941	0.548	4e-33
Q69RC4	119	Autophagy-related protein	no	no	0.941	0.949	0.566	4e-33
Q2XPP5	119	Autophagy-related protein	N/A	no	0.941	0.949	0.566	4e-33
Q4P2U6	118	Autophagy-related protein	N/A	no	0.941	0.957	0.539	5e-33
Q7XPR1	119	Autophagy-related protein	yes	no	0.941	0.949	0.539	5e-33

>sp|Q8S925|ATG8H_ARATH Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1

 Score =  191 bits (486), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 102/115 (88%)

Query: 6   VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFI 65
           VKSFK + S DERL+ES  I+AKYPDR+PVIIEKYS  DLPDMEK KYLVPRDM++GHFI
Sbjct: 5   VKSFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFI 64

Query: 66  YILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           ++LS R+ L+P KALFVFV+NTLPQTASRMDS+Y +FK+ DGFLYMCYSTEKTFG
Sbjct: 65  HMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRP7|ATG8I_ARATH Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 102/115 (88%)

Query: 6   VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFI 65
           +KSFK +++ DERL ES+ I+AKYP R+PVI EKY +TDLP +EK K+LVPRDMS+G FI
Sbjct: 1   MKSFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFI 60

Query: 66  YILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           YILS+RLHL PGKALFVFVNNTLPQTA+ MDS+Y+S+KD DGF+YMCYS+EKTFG
Sbjct: 61  YILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2RBS4|ATG8D_ORYSJ Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2

 Score =  168 bits (426), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 97/117 (82%), Gaps = 1/117 (0%)

Query: 5   KVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHF 64
           K + FK E + +ER +ES A++A YPDR+PVI+EK+SR++LP+MEK KYLVP +M +G F
Sbjct: 2   KPRPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQF 61

Query: 65  IYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYSTEKTFG 120
           I+IL SRLHL PG ALFVFVNNTLPQTA  M S+Y+S+KD  DGFLY+CYS+EKTFG
Sbjct: 62  IFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H715|ATG8_PHYIN Autophagy-related protein 8 OS=Phytophthora infestans GN=ATG8 PE=3 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 86/113 (76%)

Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           SFK EH F++R  E++ I +KYPDR+PVI EK  R+D+PD++K KYLVP D+++G F+Y+
Sbjct: 3   SFKKEHPFEKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKKKYLVPADLTVGQFVYV 62

Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L P KA+F+F+NN LP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct: 63  IRKRIKLSPEKAIFIFINNVLPPTAALMSNIYEEQKDVDGFLYITYSGENTFG 115

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Phytophthora infestans (taxid: 4787)

>sp|Q6Z1D5|ATG8C_ORYSJ Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 82/113 (72%)

Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           SFK EH  + R  E+  I  KYPDR+PVI+EK  R+D+PD++K KYLVP D+++G F+Y+
Sbjct: 5   SFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYV 64

Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L   KA+F+FV NTLP TA+ M +IY+  KD DGFLYM YS E TFG
Sbjct: 65  VRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YS06|ATG8C_ORYSI Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 82/113 (72%)

Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           SFK EH  + R  E+  I  KYPDR+PVI+EK  R+D+PD++K KYLVP D+++G F+Y+
Sbjct: 5   SFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYV 64

Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L   KA+F+FV NTLP TA+ M +IY+  KD DGFLYM YS E TFG
Sbjct: 65  VRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q69RC4|ATG8A_ORYSJ Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 82/113 (72%)

Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           SFK EH  + R  ES  I  KY DR+PVI+EK  +TD+P+++K KYLVP D+++G F+Y+
Sbjct: 5   SFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYV 64

Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L P KA+FVFV NTLP TAS M +IY+  KD DGFLYM YS E TFG
Sbjct: 65  VRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2XPP5|ATG8A_ORYSI Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 82/113 (72%)

Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           SFK EH  + R  ES  I  KY DR+PVI+EK  +TD+P+++K KYLVP D+++G F+Y+
Sbjct: 5   SFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYV 64

Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L P KA+FVFV NTLP TAS M +IY+  KD DGFLYM YS E TFG
Sbjct: 65  VRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q4P2U6|ATG8_USTMA Autophagy-related protein 8 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ATG8 PE=3 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 84/113 (74%)

Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           +FK EHSF++R  E++ I  KYPDR+PVI EK  RTD+P ++K KYLVP D+++G F+Y+
Sbjct: 4   AFKNEHSFEKRKAEAERIRQKYPDRIPVICEKADRTDIPTIDKKKYLVPSDLTVGQFVYV 63

Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L P KA+F+FV+  LP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct: 64  IRKRIKLAPEKAIFIFVDEVLPATAALMSAIYEEHKDEDGFLYVSYSGENTFG 116

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q7XPR1|ATG8B_ORYSJ Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 83/113 (73%)

Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           SFK +H+ + R  E+  I  KY DR+PVI+EK  R+D+PD++K KYLVP D+++G F+Y+
Sbjct: 5   SFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYV 64

Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L P KA+F+FV NTLP TA+ M +IY+  KD DGFLYM YS E TFG
Sbjct: 65  VRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
224099049	118	predicted protein [Populus trichocarpa]	0.983	1.0	0.796	9e-50
224112068	118	predicted protein [Populus trichocarpa]	0.983	1.0	0.788	3e-49
255548303	125	autophagy 8h, putative [Ricinus communis	0.983	0.944	0.728	2e-47
297833392	119	hypothetical protein ARALYDRAFT_477945 [	0.958	0.966	0.773	3e-47
18397569	119	autophagy-related protein 8h [Arabidopsi	0.958	0.966	0.765	4e-47
357479141	118	Autophagy-related protein [Medicago trun	0.983	1.0	0.737	5e-47
388496614	118	unknown [Medicago truncatula]	0.983	1.0	0.737	9e-47
409168207	118	autophagy 8d [Petunia x hybrida]	0.95	0.966	0.745	4e-46
301601264	125	autophagy 8 [Ipomoea nil]	0.983	0.944	0.716	4e-46
225437704	129	PREDICTED: autophagy-related protein 8i	0.983	0.914	0.75	6e-46

>gi|224099049|ref|XP_002311361.1| predicted protein [Populus trichocarpa] gi|222851181|gb|EEE88728.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 107/118 (90%)

Query: 3   MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
           MGKVKSFK E +FD+RL ESK I+ KYPDRVPVIIE+YSRTDLP+MEK KYLVPRDM++G
Sbjct: 1   MGKVKSFKQESTFDDRLGESKNIIFKYPDRVPVIIERYSRTDLPEMEKRKYLVPRDMTIG 60

Query: 63  HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            FI+ILSSRL L PGKALF+FV NTLPQTAS+MDSIY+S+KD DGFLYMCYS+EKTFG
Sbjct: 61  QFIHILSSRLELTPGKALFIFVKNTLPQTASQMDSIYESYKDDDGFLYMCYSSEKTFG 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112068|ref|XP_002316073.1| predicted protein [Populus trichocarpa] gi|222865113|gb|EEF02244.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (503), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 105/118 (88%)

Query: 3   MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
           MGK  SFK E +FDERL ESK I+ KYPDRVPVIIE+YSRTDLP+MEK K+LVPRDM++G
Sbjct: 1   MGKATSFKNEFTFDERLGESKNIIVKYPDRVPVIIERYSRTDLPEMEKRKFLVPRDMTIG 60

Query: 63  HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            FI+ILSSRL L PGKALFVFV NTLPQTAS+MDSIY+S+KD DGFLYMCYS+EKTFG
Sbjct: 61  QFIHILSSRLELTPGKALFVFVKNTLPQTASQMDSIYESYKDDDGFLYMCYSSEKTFG 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548303|ref|XP_002515208.1| autophagy 8h, putative [Ricinus communis] gi|223545688|gb|EEF47192.1| autophagy 8h, putative [Ricinus communis]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 104/118 (88%)

Query: 3   MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
           MGK  SFK E +F++RLEES  I+AKYPDRVPVI+E+Y +TDLP++EK KYLVPRDMS+G
Sbjct: 1   MGKTSSFKNEFTFEQRLEESNDIIAKYPDRVPVIVERYCKTDLPELEKKKYLVPRDMSVG 60

Query: 63  HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            FI++LSSRL + PGKALFVFV NTLPQTA+ M+S+Y+SFKD DGFLYMCYS+EKTFG
Sbjct: 61  QFIHVLSSRLRMAPGKALFVFVENTLPQTATLMNSVYESFKDGDGFLYMCYSSEKTFG 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833392|ref|XP_002884578.1| hypothetical protein ARALYDRAFT_477945 [Arabidopsis lyrata subsp. lyrata] gi|297330418|gb|EFH60837.1| hypothetical protein ARALYDRAFT_477945 [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (486), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 102/115 (88%)

Query: 6   VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFI 65
           VKSFK + S DERL+ES  I+AKYPDRVPVIIEKYS  DLPDMEK KYLVPRDM++GHFI
Sbjct: 5   VKSFKDQFSSDERLKESTNIIAKYPDRVPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFI 64

Query: 66  YILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           ++LS R+ L+P KALFVFV+NTLPQTASRMDS+Y +FK+ DGFLYMCYSTEKTFG
Sbjct: 65  HMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397569|ref|NP_566283.1| autophagy-related protein 8h [Arabidopsis thaliana] gi|75160542|sp|Q8S925.1|ATG8H_ARATH RecName: Full=Autophagy-related protein 8h; AltName: Full=Autophagy-related ubiquitin-like modifier ATG8h; Short=AtAPG8h; Short=Protein autophagy 8h gi|19912165|dbj|BAB88394.1| autophagy 8h [Arabidopsis thaliana] gi|21553409|gb|AAM62502.1| symbiosis-related like protein [Arabidopsis thaliana] gi|51968720|dbj|BAD43052.1| unknown protein [Arabidopsis thaliana] gi|51970516|dbj|BAD43950.1| unknown protein [Arabidopsis thaliana] gi|51971511|dbj|BAD44420.1| unknown protein [Arabidopsis thaliana] gi|88011118|gb|ABD38905.1| At3g06420 [Arabidopsis thaliana] gi|332640869|gb|AEE74390.1| autophagy-related protein 8h [Arabidopsis thaliana]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 102/115 (88%)

Query: 6   VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFI 65
           VKSFK + S DERL+ES  I+AKYPDR+PVIIEKYS  DLPDMEK KYLVPRDM++GHFI
Sbjct: 5   VKSFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFI 64

Query: 66  YILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           ++LS R+ L+P KALFVFV+NTLPQTASRMDS+Y +FK+ DGFLYMCYSTEKTFG
Sbjct: 65  HMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479141|ref|XP_003609856.1| Autophagy-related protein [Medicago truncatula] gi|355510911|gb|AES92053.1| Autophagy-related protein [Medicago truncatula]

 Score =  191 bits (484), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 104/118 (88%)

Query: 3   MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
           MGK+ SFK E S DER +ES++I+ KYPDR+PVIIEKYSRTDLP+++K KYLVPRDMS+G
Sbjct: 1   MGKINSFKQEFSLDERRKESQSIIVKYPDRIPVIIEKYSRTDLPELDKKKYLVPRDMSVG 60

Query: 63  HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            FI+ILSSRL L PGKALF+FV NTLPQTAS M SIY+++K+ DGFLYMCYS+EKTFG
Sbjct: 61  QFIHILSSRLRLTPGKALFIFVKNTLPQTASLMTSIYQTYKEEDGFLYMCYSSEKTFG 118

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496614|gb|AFK36373.1| unknown [Medicago truncatula]

 Score =  190 bits (483), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 103/118 (87%)

Query: 3   MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
           MGK+ SFK E S DER +ES++I+ KYPDR+PVIIEKYSRTDLP+++K KYLVPRDMS+G
Sbjct: 1   MGKINSFKQEFSLDERRKESQSIIVKYPDRIPVIIEKYSRTDLPELDKKKYLVPRDMSVG 60

Query: 63  HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            FI ILSSRL L PGKALF+FV NTLPQTAS M SIY+++K+ DGFLYMCYS+EKTFG
Sbjct: 61  QFIRILSSRLRLTPGKALFIFVKNTLPQTASLMTSIYQTYKEEDGFLYMCYSSEKTFG 118

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|409168207|dbj|BAM62967.1| autophagy 8d [Petunia x hybrida]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 101/114 (88%)

Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIY 66
           KSFK E S+DER+ ES  I+AKYPDR+PV++E+YS+TDLPDMEK KYLVPRDMS+G FI+
Sbjct: 3   KSFKQEFSYDERVAESHDIIAKYPDRLPVVVERYSKTDLPDMEKKKYLVPRDMSVGQFIH 62

Query: 67  ILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           ILS RLHL PGKALF+FVNNTLPQT S ++++Y SFKD DGFLYMCYS+EKTFG
Sbjct: 63  ILSGRLHLAPGKALFIFVNNTLPQTTSLIEAVYDSFKDDDGFLYMCYSSEKTFG 116

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301601264|dbj|BAJ13304.1| autophagy 8 [Ipomoea nil]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 105/120 (87%), Gaps = 2/120 (1%)

Query: 3   MGKVK--SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMS 60
           MGK K  SFK + S +ERL+ES+ ++AKYPDR+PV++E+YS+TDL +MEK KYLVPRDMS
Sbjct: 1   MGKAKTSSFKQQFSLEERLQESQDMIAKYPDRLPVVVERYSKTDLSEMEKKKYLVPRDMS 60

Query: 61  MGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +G FI+ILS RLHL PGKALFVFV NTLPQT++ MDS+Y+SFKD DGFLYMCYS+EKTFG
Sbjct: 61  IGQFIHILSGRLHLAPGKALFVFVENTLPQTSAVMDSVYESFKDEDGFLYMCYSSEKTFG 120

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437704|ref|XP_002280035.1| PREDICTED: autophagy-related protein 8i [Vitis vinifera]

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 105/120 (87%), Gaps = 2/120 (1%)

Query: 3   MGK--VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMS 60
           MGK  + SFK E S++ERLEES+ I+AKYPDRVPVI E+YS+TDLP+MEK K+LVPRDMS
Sbjct: 1   MGKKSMSSFKNEFSYEERLEESRDIIAKYPDRVPVIAERYSKTDLPEMEKKKFLVPRDMS 60

Query: 61  MGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +G FI+ILS RLHL PGKALFVFV NTLPQTAS MD++Y+SFKD DGFLYM YS+EKTFG
Sbjct: 61  VGQFIHILSIRLHLTPGKALFVFVENTLPQTASLMDTVYESFKDEDGFLYMSYSSEKTFG 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:2081051	119	ATG8H "autophagy 8h" [Arabidop	0.958	0.966	0.765	1.6e-45
UNIPROTKB|F2YHL2	119	LOC100736470 "Uncharacterized	0.95	0.957	0.745	3.1e-44
TAIR|locus:2092560	115	APG8H "AT3G15580" [Arabidopsis	0.958	1.0	0.730	8.1e-44
TAIR|locus:2120618	137	APG8A "AT4G21980" [Arabidopsis	0.991	0.868	0.525	1.4e-30
TAIR|locus:2125791	122	ATG8B "AT4G04620" [Arabidopsis	0.941	0.926	0.548	3e-30
SGD|S000000174	117	ATG8 "Component of autophagoso	0.941	0.965	0.495	2.7e-29
ASPGD|ASPL0000029812	118	atgH [Emericella nidulans (tax	0.933	0.949	0.517	3.4e-29
UNIPROTKB|Q51MW4	123	ATG8 "Autophagy-related protei	0.933	0.910	0.517	5.6e-29
TAIR|locus:2130759	121	ATG8F "AT4G16520" [Arabidopsis	0.975	0.966	0.491	7.1e-29
TAIR|locus:2055537	122	ATG8E "AUTOPHAGY 8E" [Arabidop	0.983	0.967	0.474	1.5e-28

TAIR|locus:2081051 ATG8H "autophagy 8h" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 88/115 (76%), Positives = 102/115 (88%)

Query:     6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFI 65
             VKSFK + S DERL+ES  I+AKYPDR+PVIIEKYS  DLPDMEK KYLVPRDM++GHFI
Sbjct:     5 VKSFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFI 64

Query:    66 YILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             ++LS R+ L+P KALFVFV+NTLPQTASRMDS+Y +FK+ DGFLYMCYSTEKTFG
Sbjct:    65 HMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|F2YHL2 LOC100736470 "Uncharacterized protein" [Solanum lycopersicum (taxid:4081)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 85/114 (74%), Positives = 102/114 (89%)

Query:     7 KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIY 66
             K+FK E+S+DERL ES+ I+AKYPDRVPV+ E+YS+TDLP+MEK KYLVPRDMS+G FI+
Sbjct:     3 KTFKDEYSYDERLTESQDIIAKYPDRVPVVAERYSKTDLPEMEKKKYLVPRDMSVGQFIH 62

Query:    67 ILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             ILS RLHL PGKALFVFVNNTLPQT S ++++Y+S KD DGFLYMCYS+EKTFG
Sbjct:    63 ILSGRLHLAPGKALFVFVNNTLPQTTSLIETVYESSKDKDGFLYMCYSSEKTFG 116

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2092560 APG8H "AT3G15580" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 84/115 (73%), Positives = 102/115 (88%)

Query:     6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFI 65
             +KSFK +++ DERL ES+ I+AKYP R+PVI EKY +TDLP +EK K+LVPRDMS+G FI
Sbjct:     1 MKSFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFI 60

Query:    66 YILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             YILS+RLHL PGKALFVFVNNTLPQTA+ MDS+Y+S+KD DGF+YMCYS+EKTFG
Sbjct:    61 YILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115

GO:0005737 "cytoplasm" evidence=NAS

GO:0005775 "vacuolar lumen" evidence=NAS

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019779 "APG8 activating enzyme activity" evidence=ISS

GO:0019786 "APG8-specific protease activity" evidence=ISS

TAIR|locus:2120618 APG8A "AT4G21980" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 63/120 (52%), Positives = 85/120 (70%)

Query:     1 MVMGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMS 60
             + M K  SFK  +  + R+ ES  I  KYPDR+PVI+EK  ++D+PD++K KYLVP D++
Sbjct:    14 IAMAK-SSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLT 72

Query:    61 MGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             +G F+Y++  R+ L   KA+FVFV NTLP TA+ M +IY+  KD DGFLYM YS E TFG
Sbjct:    73 VGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 132

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0005775 "vacuolar lumen" evidence=NAS

GO:0009507 "chloroplast" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019779 "APG8 activating enzyme activity" evidence=ISS

GO:0019786 "APG8-specific protease activity" evidence=ISS

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2125791 ATG8B "AT4G04620" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 62/113 (54%), Positives = 83/113 (73%)

Query:     8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
             SFK  +  + R+ ES  I AKYP+RVPVI+EK  ++D+PD++K KYLVP D+++G F+Y+
Sbjct:     5 SFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYV 64

Query:    68 LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             +  R+ L   KA+FVFV NTLP TA+ M +IY+  KD DGFLYM YS E TFG
Sbjct:    65 VRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

SGD|S000000174 ATG8 "Component of autophagosomes and Cvt vesicles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 56/113 (49%), Positives = 86/113 (76%)

Query:     8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
             +FK+E+ F++R  ES+ I  ++ +R+PVI EK  ++D+P+++K KYLVP D+++G F+Y+
Sbjct:     4 TFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 63

Query:    68 LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             +  R+ L P KA+F+FVN+TLP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct:    64 IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0019898 "extrinsic to membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031386 "protein tag" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA;IPI

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0000407 "pre-autophagosomal structure" evidence=IDA

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=IMP;IDA

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0033110 "CVT vesicle membrane" evidence=IEA

GO:0032258 "CVT pathway" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IGI;IMP;IPI

GO:0000422 "mitochondrion degradation" evidence=IMP

ASPGD|ASPL0000029812 atgH [Emericella nidulans (taxid:162425)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 58/112 (51%), Positives = 81/112 (72%)

Query:     9 FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
             FK EH F++R  E++ I AKY DR+PVI EK  ++D+  ++K KYLVP D+++G F+Y++
Sbjct:     5 FKDEHPFEKRKAEAERIRAKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVI 64

Query:    69 SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
               R+ L P KA+F+FV+  LP TA+ M SIY+  KD DGFLY+ YS E TFG
Sbjct:    65 RKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

GO:0005634 "nucleus" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0031386 "protein tag" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

UNIPROTKB|Q51MW4 ATG8 "Autophagy-related protein 8" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 58/112 (51%), Positives = 81/112 (72%)

Query:     9 FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
             FK EH F++R  E++ I  KY DR+PVI EK  ++D+  ++K KYLVP D+++G F+Y++
Sbjct:     5 FKDEHPFEKRKAEAERIRQKYTDRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVI 64

Query:    69 SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
               R+ L P KA+F+FV +TLP TA+ M SIY+  KD DGFLY+ YS E TFG
Sbjct:    65 RKRIKLSPEKAIFIFVQDTLPPTAALMSSIYELHKDEDGFLYITYSGENTFG 116

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=IMP

GO:0016239 "positive regulation of macroautophagy" evidence=IMP

GO:0048102 "autophagic cell death" evidence=IMP

TAIR|locus:2130759 ATG8F "AT4G16520" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 58/118 (49%), Positives = 82/118 (69%)

Query:     3 MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
             M K  SFK EH  ++R  E+  I  KYPDR+PVI+EK  ++D+P ++K KYLVP D+++G
Sbjct:     1 MAK-SSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVG 59

Query:    63 HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
              F+Y++  R+ L   KA+F+FV+N LP   + M S+Y+  KD DGFLY+ YS E TFG
Sbjct:    60 QFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

TAIR|locus:2055537 ATG8E "AUTOPHAGY 8E" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 56/118 (47%), Positives = 83/118 (70%)

Query:     3 MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
             M K   FK ++ F++R  E+  I  KYPDR+PVI+EK  ++++P+++K KYLVP D+++G
Sbjct:     1 MNKGSIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVG 60

Query:    63 HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
              F+Y++  R+ L   KA+F+FV+N LP T   M S+Y+  KD DGFLY+ YS E TFG
Sbjct:    61 QFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0016020 "membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7E8H4	ATG8_SCLS1	No assigned EC number	0.5089	0.9333	0.9105	N/A	no
Q51MW4	ATG8_MAGO7	No assigned EC number	0.5178	0.9333	0.9105	N/A	no
Q9LRP7	ATG8I_ARATH	No assigned EC number	0.7304	0.9583	1.0	no	no
P0CO55	ATG8_CRYNB	No assigned EC number	0.5178	0.9333	0.8888	N/A	no
P0CO54	ATG8_CRYNJ	No assigned EC number	0.5178	0.9333	0.8888	yes	no
Q5QFG1	ATG8_PICAN	No assigned EC number	0.5044	0.9416	0.904	N/A	no
Q2XPP5	ATG8A_ORYSI	No assigned EC number	0.5663	0.9416	0.9495	N/A	no
Q8S925	ATG8H_ARATH	No assigned EC number	0.7652	0.9583	0.9663	yes	no
Q755X2	ATG8_ASHGO	No assigned EC number	0.4778	0.9416	0.9416	yes	no
Q4P2U6	ATG8_USTMA	No assigned EC number	0.5398	0.9416	0.9576	N/A	no
Q8J282	ATG8_PODAS	No assigned EC number	0.5089	0.9333	0.9256	yes	no
O94272	ATG8_SCHPO	No assigned EC number	0.4867	0.9416	0.9338	yes	no
A6RPU4	ATG8_BOTFB	No assigned EC number	0.5089	0.9333	0.9105	N/A	no
Q0V3Y9	ATG8_PHANO	No assigned EC number	0.5089	0.9333	0.9411	N/A	no
A1D3N4	ATG8_NEOFI	No assigned EC number	0.5089	0.9333	0.9491	N/A	no
Q1E4K5	ATG8_COCIM	No assigned EC number	0.5089	0.9333	0.9572	N/A	no
Q6C794	ATG8_YARLI	No assigned EC number	0.5089	0.9333	0.9032	yes	no
Q6FXR8	ATG8_CANGA	No assigned EC number	0.5132	0.9416	0.9576	yes	no
Q2RBS4	ATG8D_ORYSJ	No assigned EC number	0.6581	0.9666	0.9830	yes	no
Q4WJ27	ATG8_ASPFU	No assigned EC number	0.5089	0.9333	0.9491	yes	no
A2YS06	ATG8C_ORYSI	No assigned EC number	0.5486	0.9416	0.9416	N/A	no
Q6Z1D5	ATG8C_ORYSJ	No assigned EC number	0.5486	0.9416	0.9416	yes	no
A1CQS1	ATG8_ASPCL	No assigned EC number	0.5089	0.9333	0.9491	N/A	no
Q7XPR1	ATG8B_ORYSJ	No assigned EC number	0.5398	0.9416	0.9495	yes	no
Q5B2U9	ATG8_EMENI	No assigned EC number	0.5178	0.9333	0.9491	yes	no
Q6CMF8	ATG8_KLULA	No assigned EC number	0.5132	0.9416	0.9112	yes	no
Q8H715	ATG8_PHYIN	No assigned EC number	0.5486	0.9416	0.9741	N/A	no
A2QPN1	ATG8_ASPNC	No assigned EC number	0.5089	0.9333	0.9491	yes	no
A2XXR7	ATG8B_ORYSI	No assigned EC number	0.5398	0.9416	0.9495	N/A	no
Q8WZY7	ATG8_NEUCR	No assigned EC number	0.5089	0.9333	0.9256	N/A	no
A3GFU8	ATG8_PICST	No assigned EC number	0.4955	0.9416	0.8129	yes	no
Q2UBH5	ATG8_ASPOR	No assigned EC number	0.5089	0.9333	0.9491	yes	no
P38182	ATG8_YEAST	No assigned EC number	0.4955	0.9416	0.9658	yes	no
Q2GVL1	ATG8_CHAGB	No assigned EC number	0.5089	0.9333	0.9256	N/A	no
A7TDU7	ATG8_VANPO	No assigned EC number	0.5044	0.9416	0.9576	N/A	no
Q0C804	ATG8_ASPTN	No assigned EC number	0.5089	0.9333	0.9491	N/A	no
A4LA70	ATG8_COLLN	No assigned EC number	0.5089	0.9333	0.9256	N/A	no
A7KAL9	ATG8_PENCW	No assigned EC number	0.5089	0.9333	0.9491	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	120
cd01611	112	cd01611, GABARAP, Ubiquitin domain of GABA-recepto	7e-62
pfam02991	104	pfam02991, Atg8, Autophagy protein Atg8 ubiquitin	3e-54
PTZ00380	121	PTZ00380, PTZ00380, microtubule-associated protein	7e-05
pfam04110	87	pfam04110, APG12, Ubiquitin-like autophagy protein	1e-04

>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein

 Score =  183 bits (468), Expect = 7e-62
 Identities = 63/112 (56%), Positives = 87/112 (77%)

Query: 9   FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
           FK  H F++R  E + I AKYPDR+PVI+E+Y ++DLPD++K KYLVP D+++G F+YI+
Sbjct: 1   FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYII 60

Query: 69  SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             R+ L P KALF+FVNN+LP T++ M  +Y+  KD DGFLYM YS+E+TFG
Sbjct: 61  RKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSSEETFG 112

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112

>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like

 Score =  164 bits (417), Expect = 3e-54
 Identities = 62/104 (59%), Positives = 80/104 (76%)

Query: 17  ERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEP 76
           +R  ES+ I  KYPDR+PVIIEK S +DLPD++K KYLVP D+++G FIYI+  R+ L P
Sbjct: 1   KRQAESEKIREKYPDRIPVIIEKASGSDLPDIDKKKYLVPADLTVGQFIYIIRKRIQLRP 60

Query: 77  GKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            KA+F+FVNNTLP T++ M ++Y+  KD DGFLYM YS E TFG
Sbjct: 61  EKAIFLFVNNTLPPTSATMSALYEEEKDEDGFLYMVYSGENTFG 104

Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19. Length = 104

>gnl|CDD|173572 PTZ00380, PTZ00380, microtubule-associated protein (MAP); Provisional

 Score = 38.9 bits (90), Expect = 7e-05
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYL-VPRDMSMGHFIY 66
           ++ + +  + R  E   + AKYP  V V++E   +       K  +L +PRD ++     
Sbjct: 3   AYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEA 58

Query: 67  ILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            +   L     K       +T   TA+  D I  + K  DGFLY+   TE+  G
Sbjct: 59  AVRQALGTSAKKVTLAIEGSTPAVTATVGD-IADACKRDDGFLYVSVRTEQAMG 111

Length = 121

>gnl|CDD|217901 pfam04110, APG12, Ubiquitin-like autophagy protein Apg12

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 44  DLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFK 103
           D P ++K+K+ V    +    I  L   L L+   +LF++VNN+    A   D I  +  
Sbjct: 11  DAPILKKSKFKVNPSQTFASVILFLKKFLKLQASDSLFLYVNNSF---APSPDQIVGN-- 65

Query: 104 DADGFLYMCYSTEK 117
                LY C+ T+ 
Sbjct: 66  -----LYECFGTDG 74

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. The Apg12 system is one of the ubiquitin-like protein conjugation systems conserved in eukaryotes. It was first discovered in yeast during systematic analyses of the apg mutants defective in autophagy. Covalent attachment of Apg12-Apg5 is essential for autophagy. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
KOG1654	116	consensus Microtubule-associated anchor protein in	100.0
cd01611	112	GABARAP Ubiquitin domain of GABA-receptor-associat	100.0
PTZ00380	121	microtubule-associated protein (MAP); Provisional	100.0
PF02991	104	Atg8: Autophagy protein Atg8 ubiquitin like; Inter	100.0
cd01612	87	APG12_C Ubiquitin-like domain of APG12. APG12_C Th	100.0
PF04110	87	APG12: Ubiquitin-like autophagy protein Apg12 ; In	99.92
KOG3439	116	consensus Protein conjugation factor involved in a	99.91
PF04106	197	APG5: Autophagy protein Apg5 ; InterPro: IPR007239	96.59
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	95.52
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	93.29
KOG2660	331	consensus Locus-specific chromosome binding protei	91.77
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	91.13
PF13019	162	Telomere_Sde2: Telomere stability and silencing	89.29
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	86.2
KOG2976	278	consensus Protein involved in autophagy and nutrie	83.42
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	82.21
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	82.06

>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]

Probab=100.00  E-value=5.8e-53  Score=293.13  Aligned_cols=115  Identities=53%  Similarity=0.966  Sum_probs=113.3

Q ss_pred             CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384            6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN   85 (120)
Q Consensus         6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn   85 (120)
                      +++||++||||+|++|+.+||+|||+|||||||++.++++|.|||+|||||+++|||||+.+||+||+|++++|+|||||
T Consensus         2 ~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn   81 (116)
T KOG1654|consen    2 KSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVN   81 (116)
T ss_pred             cchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      |.+|+.+++|++||+++||+||||||+||+|+|||
T Consensus        82 ~~~p~ts~~ms~~Ye~~kdeDgFLYm~Ys~e~tfG  116 (116)
T KOG1654|consen   82 NTSPPTSATMSALYEEEKDEDGFLYMTYSGENTFG  116 (116)
T ss_pred             CcCCcchhhHHHHHHhhcccCcEEEEEeccccccC
Confidence            99999999999999999999999999999999999

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein

Probab=100.00  E-value=3e-52  Score=292.60  Aligned_cols=112  Identities=56%  Similarity=1.098  Sum_probs=111.1

Q ss_pred             ccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCcc
Q 033384            9 FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTL   88 (120)
Q Consensus         9 fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~l   88 (120)
                      ||++||||+|++|+++||+|||+|||||||+++++++|.|+++||+||+++||+||+.+||++|+|++++||||||||.+
T Consensus         1 fk~~~s~e~R~~e~~~ir~kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~   80 (112)
T cd01611           1 FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSL   80 (112)
T ss_pred             CccccCHHHHHHHHHHHHHHCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           89 PQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        89 p~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      |++|++||+||++|||+||||||+||+++|||
T Consensus        81 p~~~~~~~~lY~~~kd~DGfLyl~Ys~~~tfG  112 (112)
T cd01611          81 PPTSATMSQLYEEHKDEDGFLYMTYSSEETFG  112 (112)
T ss_pred             CCchhHHHHHHHHhCCCCCEEEEEEeccccCC
Confidence            99999999999999999999999999999999

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=100.00  E-value=9.5e-50  Score=282.56  Aligned_cols=109  Identities=24%  Similarity=0.482  Sum_probs=106.1

Q ss_pred             CCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceE-EecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384            7 KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKY-LVPRDMSMGHFIYILSSRLHLEPGKALFVFVN   85 (120)
Q Consensus         7 ~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kf-lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn   85 (120)
                      ++||++||||+|++|+++||+|||+|||||||++++++    +++|| |||+|+||+||+++||+||+|++++ +|||||
T Consensus         2 ~~fK~~~s~e~R~~e~~~Ir~kyPdrIPVIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVn   76 (121)
T PTZ00380          2 SAYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIE   76 (121)
T ss_pred             cchhhcCCHHHHHHHHHHHHHHCCCccEEEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEEC
Confidence            57999999999999999999999999999999999887    89999 6999999999999999999999999 999999


Q ss_pred             CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      |.+|+++++||+||++|||+||||||+||+++|||
T Consensus        77 n~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~e~tFG  111 (121)
T PTZ00380         77 GSTPAVTATVGDIADACKRDDGFLYVSVRTEQAMG  111 (121)
T ss_pred             CccCCccchHHHHHHHhcCCCCeEEEEEccccccc
Confidence            99999999999999999999999999999999999

>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules

Probab=100.00  E-value=3.3e-49  Score=274.05  Aligned_cols=104  Identities=58%  Similarity=1.120  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHH
Q 033384           17 ERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMD   96 (120)
Q Consensus        17 ~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~   96 (120)
                      +|++|+++||+|||+|||||||+++++++|+||++|||||.++||+||+.+||++|+|+++++|||||||.+|+++++||
T Consensus         1 ~R~~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~   80 (104)
T PF02991_consen    1 ERKEESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG   80 (104)
T ss_dssp             HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred             CcHHHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCeEEEEecccccCC
Q 033384           97 SIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        97 ~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      +||++|||+||||||+||++++||
T Consensus        81 elY~~~kdeDGFLY~~Ys~e~tFG  104 (104)
T PF02991_consen   81 ELYEKYKDEDGFLYMTYSSEETFG  104 (104)
T ss_dssp             HHHHHHB-TTSSEEEEEESSSSBC
T ss_pred             HHHHHhCCCCCeEEEEeccccccC
Confidence            999999999999999999999999

The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....

>cd01612 APG12_C Ubiquitin-like domain of APG12

Probab=100.00  E-value=1e-33  Score=190.87  Aligned_cols=84  Identities=24%  Similarity=0.475  Sum_probs=79.0

Q ss_pred             EEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384           36 IIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCYS  114 (120)
Q Consensus        36 IvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLyl~Ys  114 (120)
                      .|.-.+-+++|+|+++||+||+++||++|+.+||+||++++++|||||||| ++|++|++||+||++| |+||||||+||
T Consensus         3 ~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Ys   81 (87)
T cd01612           3 TIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSYC   81 (87)
T ss_pred             EEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEEe
Confidence            344445589999999999999999999999999999999999999999999 7999999999999999 89999999999


Q ss_pred             ccccCC
Q 033384          115 TEKTFG  120 (120)
Q Consensus       115 ~~~~fG  120 (120)
                      +++|||
T Consensus        82 ~~~afG   87 (87)
T cd01612          82 KTVAFG   87 (87)
T ss_pred             CccccC
Confidence            999999

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.

>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.92  E-value=2.9e-25  Score=149.65  Aligned_cols=78  Identities=24%  Similarity=0.560  Sum_probs=58.5

Q ss_pred             CCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           42 RTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        42 ~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      -+++|.|+++||.|.++.||+.++.+||++|+++++++||+|||+ |.|++|+++|+||++|+ .||.|.|+||.++|||
T Consensus         9 iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~-~~~~Liv~Ys~t~A~G   87 (87)
T PF04110_consen    9 IGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG-TNGELIVSYSKTPAWG   87 (87)
T ss_dssp             ETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH--BTTBEEEEEESSS---
T ss_pred             cCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC-CCCEEEEEEecccccC
Confidence            378999999999999999999999999999999999999999999 99999999999999998 8999999999999999

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.

>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.5e-24  Score=148.22  Aligned_cols=86  Identities=26%  Similarity=0.526  Sum_probs=79.4

Q ss_pred             CcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEE
Q 033384           32 RVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLY  110 (120)
Q Consensus        32 ~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLy  110 (120)
                      +|-|.+ + +-+++|.|+++||.|+.+.||+.++.+|||+|+|++.++||||||| |+|++|+.+|+||+||+ .||.|.
T Consensus        30 kV~i~l-~-aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~-~d~~Lv  106 (116)
T KOG3439|consen   30 KVQIRL-R-AIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFG-TDGKLV  106 (116)
T ss_pred             eEEEEE-e-ccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcC-CCCEEE
Confidence            444444 3 3389999999999999999999999999999999999999999999 99999999999999996 899999


Q ss_pred             EEecccccCC
Q 033384          111 MCYSTEKTFG  120 (120)
Q Consensus       111 l~Ys~~~~fG  120 (120)
                      ++||...|||
T Consensus       107 l~Yc~s~A~G  116 (116)
T KOG3439|consen  107 LNYCISVAWG  116 (116)
T ss_pred             EEEeeecccC
Confidence            9999999999

>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.59  E-value=0.005  Score=46.82  Aligned_cols=100  Identities=15%  Similarity=0.234  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHHHHH---hhCCCCcceEEEccCCCCCCCCccceEEec---CCCchHhHHHHHhhhc--CCCCCCeEEEEE
Q 033384           13 HSFDERLEESKAIV---AKYPDRVPVIIEKYSRTDLPDMEKTKYLVP---RDMSMGHFIYILSSRL--HLEPGKALFVFV   84 (120)
Q Consensus        13 ~~~e~R~~e~~~~r---~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~---~~~tv~~~~~~lRk~l--~l~~~~slfl~V   84 (120)
                      +.|++=..-..++.   ..-..+|||.|-....  .|.++..--...   ...|++++...+=--+  .-+......+++
T Consensus        88 ~~~~~f~~i~~kl~~~~~~~~r~IPiRiy~~~~--~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~ii  165 (197)
T PF04106_consen   88 HDFDQFWSINSKLMPPDPSKFRHIPIRIYLPGS--VPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVII  165 (197)
T ss_dssp             T-HHHHHHHHHHHS----SS-SB--EEEEE-SS----EE----B----TT---BTGGGHHHHHTTT--T------EEEEE
T ss_pred             hCHHHHHHHHHHHHhhcCCCcceeEEEEEeCCC--cceEecccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEE
Confidence            34444444455555   5667899999987643  233332211111   2347777655443222  113345677889


Q ss_pred             cCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384           85 NNTLPQTASRMDSIYKSFKDADGFLYMCYS  114 (120)
Q Consensus        85 n~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys  114 (120)
                      ++-.++.|+.|..||+.+...||||||.-+
T Consensus       166 hGI~ipldtpl~~l~~~l~~~D~FLhivv~  195 (197)
T PF04106_consen  166 HGIEIPLDTPLQWLYENLSYPDGFLHIVVR  195 (197)
T ss_dssp             TTEEE-TTSBHHHHHHHH--TTS-EEEEEE
T ss_pred             eCeeCCCCCcHHHHHHHccCCCCeEEEEEE
Confidence            997777799999999999999999999753

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=95.52  E-value=0.13  Score=41.87  Aligned_cols=88  Identities=13%  Similarity=0.321  Sum_probs=70.9

Q ss_pred             CCCCcceEEEccCCCCCCCCccc-----------------eEEecCCCchHhHHHHHhhhc--------------CCCCC
Q 033384           29 YPDRVPVIIEKYSRTDLPDMEKT-----------------KYLVPRDMSMGHFIYILSSRL--------------HLEPG   77 (120)
Q Consensus        29 yp~~ipVIvE~~~~~~~p~L~k~-----------------Kflv~~~~tv~~~~~~lRk~l--------------~l~~~   77 (120)
                      -+.||+-++.++..+..|.+...                 |.-.+.-+.|..+...|-.|+              .+.++
T Consensus       211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~  290 (331)
T PF11816_consen  211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE  290 (331)
T ss_pred             CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence            34677788888874444555544                 888899999999999999999              45788


Q ss_pred             CeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384           78 KALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTE  116 (120)
Q Consensus        78 ~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~  116 (120)
                      +.|=|+||+.+.+++++|+.|=.-+=-..|-|.+.|...
T Consensus       291 e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k  329 (331)
T PF11816_consen  291 EWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK  329 (331)
T ss_pred             ceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence            999999999889999999999888434688999999753

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=93.29  E-value=0.23  Score=30.92  Aligned_cols=50  Identities=8%  Similarity=0.207  Sum_probs=40.4

Q ss_pred             ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384           49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI   98 (120)
Q Consensus        49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l   98 (120)
                      +.-.|.|..+.+++.++...+++.++++.+++-|+.++....++.|++++
T Consensus        11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~   60 (72)
T PF11976_consen   11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL   60 (72)
T ss_dssp             EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred             CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence            35678899999999999999999999986677777888656777788775

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=91.77  E-value=0.26  Score=40.55  Aligned_cols=72  Identities=15%  Similarity=0.268  Sum_probs=59.8

Q ss_pred             CCCCCccceEE-ecCCCchHhHHHHHhhhcC-CCCCCeEEEEEcCccCCCCchHHHHHhhccC--CCCeEEEEeccc
Q 033384           44 DLPDMEKTKYL-VPRDMSMGHFIYILSSRLH-LEPGKALFVFVNNTLPQTASRMDSIYKSFKD--ADGFLYMCYSTE  116 (120)
Q Consensus        44 ~~p~L~k~Kfl-v~~~~tv~~~~~~lRk~l~-l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd--~DGfLyl~Ys~~  116 (120)
                      .++.|. ++|+ +++..|+.++..++++++. +...-.+=+++|+.+..-+.||.++.-.+..  .||-|-+.|...
T Consensus       159 ~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~  234 (331)
T KOG2660|consen  159 TLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVK  234 (331)
T ss_pred             cccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEeccc
Confidence            355555 6777 9999999999999999998 7766677788888888999999998887766  499999999843

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=91.13  E-value=0.96  Score=30.09  Aligned_cols=55  Identities=22%  Similarity=0.383  Sum_probs=42.8

Q ss_pred             EecCCCchHhHHHHHhhhcCCCCCCeEEEEEc----C-ccCCCCchHHHHHhhccCCCCeEEE
Q 033384           54 LVPRDMSMGHFIYILSSRLHLEPGKALFVFVN----N-TLPQTASRMDSIYKSFKDADGFLYM  111 (120)
Q Consensus        54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn----~-~lp~~~~~~~~lY~~~kd~DGfLyl  111 (120)
                      -||.+.+++++...|++||++++ +.+.|.-.    + ..|-.|+.|.+.+.+=+  ||-|-+
T Consensus        16 rvp~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~~--~~~lTL   75 (80)
T cd06406          16 QVARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQAK--DGCLTL   75 (80)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhhc--CCeEEE
Confidence            48999999999999999999984 45666544    2 45667889999988876  666544

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=89.29  E-value=2.9  Score=31.24  Aligned_cols=61  Identities=23%  Similarity=0.397  Sum_probs=47.5

Q ss_pred             eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc-C-cc-CCCCchHHHHHhhccCCCCeEEEEe
Q 033384           52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN-N-TL-PQTASRMDSIYKSFKDADGFLYMCY  113 (120)
Q Consensus        52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn-~-~l-p~~~~~~~~lY~~~kd~DGfLyl~Y  113 (120)
                      -+-+|.+.|++++...|..++.......++|+++ | .+ +..+..++.+...-.+. +|+.+..
T Consensus        18 ~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~-~~~~l~l   81 (162)
T PF13019_consen   18 SLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDS-DFITLRL   81 (162)
T ss_pred             EeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCC-CceEEEE
Confidence            4569999999999999999999988877778776 4 44 46777888888777543 5766654

>smart00213 UBQ Ubiquitin homologues

Probab=86.20  E-value=2.7  Score=24.76  Aligned_cols=46  Identities=2%  Similarity=-0.018  Sum_probs=34.8

Q ss_pred             ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384           51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS   97 (120)
Q Consensus        51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~   97 (120)
                      ..+-|+.+.|++++...|.++.+++++. +=|+.++.....+.++++
T Consensus        12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~   57 (64)
T smart00213       12 ITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD   57 (64)
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence            3466999999999999999999997653 445567755666667655

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones]

Probab=83.42  E-value=16  Score=29.46  Aligned_cols=91  Identities=20%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhh----CCCCcceEEEcc--C-------CCCCCCCccceEEecCCCchHhHHHHHhhhcC--------
Q 033384           15 FDERLEESKAIVAK----YPDRVPVIIEKY--S-------RTDLPDMEKTKYLVPRDMSMGHFIYILSSRLH--------   73 (120)
Q Consensus        15 ~e~R~~e~~~~r~k----yp~~ipVIvE~~--~-------~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~--------   73 (120)
                      |++=..-+.++..-    .+-+||+.+--+  +       +...|.      .-.+|-+.+.+-.+|.+++.        
T Consensus       162 fd~F~~Is~Kl~~s~e~n~~r~IPL~iy~sq~~t~r~f~~~~~~P~------~~~~d~~~stlge~l~d~~~~s~~s~d~  235 (278)
T KOG2976|consen  162 FDDFWEISNKLMESVEDNRSRHIPLRIYTSQVKTARDFRTSLTFPC------ISQPDGSLSTLGEFLKDRLPDSLDSKDD  235 (278)
T ss_pred             HHHHHHHHHHHHhhccccccccceeEeeccccccccchhhccccce------eecCchhhhhhhHHHHhhcccccCcccc
Confidence            33333344444444    888999999843  1       122331      11223334444445566663        


Q ss_pred             CCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384           74 LEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY  113 (120)
Q Consensus        74 l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y  113 (120)
                      ....+.  +.+.+--++....+..||......||||||+.
T Consensus       236 ~~~~~~--viihGIei~l~tpL~~l~~~L~ypD~FLHI~l  273 (278)
T KOG2976|consen  236 INGNDP--VIIHGIEIPLHTPLYWLYSNLSYPDGFLHIVL  273 (278)
T ss_pred             ccccCc--eEEecccccccchHHHHHhhccCCCcceEEEE
Confidence            222233  45556556778899999999999999999975

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=82.21  E-value=6.4  Score=25.86  Aligned_cols=59  Identities=7%  Similarity=0.191  Sum_probs=45.0

Q ss_pred             CCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC
Q 033384           46 PDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD  104 (120)
Q Consensus        46 p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd  104 (120)
                      |.+--+.+-||++..+..++.+--...++++..+.-+--++.-..+.++-|+++-+|..
T Consensus        13 p~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGs   71 (76)
T PF03671_consen   13 PKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGS   71 (76)
T ss_dssp             STS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-S
T ss_pred             CCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCc
Confidence            56777888999999999999999999999999885443334666888999999999964

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

>cd00196 UBQ Ubiquitin-like proteins

Probab=82.06  E-value=6.2  Score=21.39  Aligned_cols=41  Identities=24%  Similarity=0.354  Sum_probs=31.2

Q ss_pred             CccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccC
Q 033384           48 MEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLP   89 (120)
Q Consensus        48 L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp   89 (120)
                      .....+.++.+.|++++...|..+.+.. .+...|++|+ .++
T Consensus         7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~-~~~~~l~~~~~~~~   48 (69)
T cd00196           7 GKTVELLVPSGTTVADLKEKLAKKLGLP-PEQQRLLVNGKILP   48 (69)
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHCcC-hHHeEEEECCeECC
Confidence            4556678889999999999999998854 4456777776 443

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	120
2kwc_A	116	The Nmr Structure Of The Autophagy-Related Protein		1e-32
2li5_A	117	Nmr Structure Of Atg8-Atg7c30 Complex Length = 117		2e-32
3vh3_B	119	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		2e-32
2kq7_A	119	Solution Structure Of The Autophagy-Related Protein		1e-31
3rui_B	118	Crystal Structure Of Atg7c-Atg8 Complex Length = 11		1e-31
2zpn_A	119	The Crystal Structure Of Saccharomyces Cerevisiae A		2e-31
1eo6_A	117	Crystal Structure Of Gate-16 Length = 117		4e-29
3m95_A	125	Crystal Structure Of Autophagy-Related Protein Atg8		1e-28
2l8j_A	119	Gabarapl-1 Nbr1-Lir Complex Structure Length = 119		1e-26
1kot_A	119	Solution Structure Of Human Gaba Receptor Associate		3e-26
1kjt_A	119	Crystal Structure Of The Gaba(A) Receptor Associate		3e-26
1gnu_A	117	Gaba(a) Receptor Associated Protein Gabarap Length		3e-26
2r2q_A	110	Crystal Structure Of Human Gamma-Aminobutyric Acid		3e-26
3h9d_A	119	Crystal Structure Of Trypanosoma Brucei Atg8 Length		2e-25
3vvw_B	128	Ndp52 In Complex With Lc3c Length = 128		3e-24
4eoy_A	128	Plasmodium Falciparum Atg8 In Complex With Plasmodi		5e-24
2k6q_A	121	Lc3 P62 Complex Structure Length = 121		5e-22
1v49_A	120	Solution Structure Of Microtubule-Associated Protei		6e-22
2zjd_A	130	Crystal Structure Of Lc3-P62 Complex Length = 130		6e-22
2z0e_B	129	The Crystal Structure Of Human Atg4b- Lc3(1-124) Co		6e-22
1ugm_A	125	Crystal Structure Of Lc3 Length = 125		6e-22
3eci_A	122	Microtubule-Associated Protein 1 Light Chain 3 Alph		7e-21

>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116

Iteration: 1
 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 87/113 (76%)
Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           +FK+E+ F++R  ES+ I  ++P+R+PVI EK  ++D+P+++K KYLVP D+++G F+Y+
Sbjct: 4   TFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 63
Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L P KA+F+FVN+TLP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct: 64  IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116

>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 87/113 (76%)
Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           +FK+E+ F++R  ES+ I  ++P+R+PVI EK  ++D+P+++K KYLVP D+++G F+Y+
Sbjct: 5   TFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 64
Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L P KA+F+FVN+TLP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct: 65  IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 117

>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119

Iteration: 1
 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 87/113 (76%)
Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           +FK+E+ F++R  ES+ I  ++P+R+PVI EK  ++D+P+++K KYLVP D+++G F+Y+
Sbjct: 7   TFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 66
Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L P KA+F+FVN+TLP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct: 67  IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Query: 4   GKVKS-FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
           G +KS FK+E+ F++R  ES+ I  ++ +R+PVI EK  ++D+P+++K KYLVP D+++G
Sbjct: 1   GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVG 60
Query: 63  HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            F+Y++  R+ L P KA+F+FVN+TLP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct: 61  QFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118

Iteration: 1
 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Query: 4   GKVKS-FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
           G +KS FK+E+ F++R  ES+ I  ++ +R+PVI EK  ++D+P+++K KYLVP D+++G
Sbjct: 1   GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVG 60
Query: 63  HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            F+Y++  R+ L P KA+F+FVN+TLP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct: 61  QFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 86/113 (76%)
Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           +FK+E+ F++R  ES+ I  ++ +R+PVI EK  ++D+P+++K KYLVP D+++G F+Y+
Sbjct: 7   TFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 66
Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+ L P KA+F+FVN+TLP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct: 67  IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 79/112 (70%)
Query: 9   FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
           FK +HS + R  ES  I AKYPDRVPVI+EK S + + D++K KYLVP D+++  F++I+
Sbjct: 5   FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWII 64
Query: 69  SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             R+ L   KA+F+FV+ T+PQ++  M  +Y+  KD DGFLY+ YS E TFG
Sbjct: 65  RKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 77/113 (68%)
Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
            +K EHSF++R  E + I  KYPDRVPVI+EK  +  L D++K KYLVP D+++G F ++
Sbjct: 12  QYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFL 71
Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           +  R+HL P  ALF FVNN +P T++ M S+Y+   D D FLY+ +S E  +G
Sbjct: 72  IRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124

>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 75/109 (68%)
Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
            +K +H F+ R +E + I  KYPDRVPVI+EK  +  +PD++K KYLVP D+++G F ++
Sbjct: 8   QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 67
Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTE 116
           +  R+HL P  ALF FVNNT+P T++ M  +Y+   + D FLY+ YS E
Sbjct: 68  IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDE 116

>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 9   FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
           +K EH F++R  E + I  KYPDRVPVI+EK  +  + D++K KYLVP D+++G F +++
Sbjct: 7   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 69  SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             R+HL    ALF FVNN +P T++ M  +Y+   + D FLY+ YS E  +G
Sbjct: 67  RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 9   FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
           +K EH F++R  E + I  KYPDRVPVI+EK  +  + D++K KYLVP D+++G F +++
Sbjct: 7   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 69  SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             R+HL    ALF FVNN +P T++ M  +Y+   + D FLY+ YS E  +G
Sbjct: 67  RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 9   FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
           +K EH F++R  E + I  KYPDRVPVI+EK  +  + D++K KYLVP D+++G F +++
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
Query: 69  SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             R+HL    ALF FVNN +P T++ M  +Y+   + D FLY+ YS E  +G
Sbjct: 65  RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116

>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 74/107 (69%)
Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
            +K +H F+ R +E + I  KYPDRVPVI+EK  +  +PD++K KYLVP D+++G F ++
Sbjct: 3   QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62
Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114
           +  R+HL P  ALF FVNNT+P T++ M  +Y+   + D FLY+ YS
Sbjct: 63  IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109

>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 77/112 (68%)
Query: 9   FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
           +K  H+F+ R  ++  +  ++PDR+P+I EK   +D+ ++++ K+LVP D+++G F+ +L
Sbjct: 8   YKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVL 67
Query: 69  SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
             R+ LE   ALFV+ N+T+  ++++M  IY  +KD DGFLYM YS E TFG
Sbjct: 68  RKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119

>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128

Iteration: 1
 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
Query: 6   VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSR-TDLPDMEKTKYLVPRDMSMGHF 64
           V+ FK   S   R EE   I AK+P+++PV++E+Y R T LP ++KTK+LVP++++M  F
Sbjct: 12  VRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQF 71
Query: 65  IYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           + I+ SR+ L   +A ++ VNN +L   ++ M  IY+ +KD DGF+YM Y++++TFG
Sbjct: 72  LSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 128

>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128

Iteration: 1
 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
           S K E SF+ R+ E+  I +KYP+R+PV+IE+ +R++LP +EK K+LVP +M +G F +I
Sbjct: 7   SLKDEVSFENRVAETHKIRSKYPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGEFKFI 66
Query: 68  L---------SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKT 118
           L          S + L   + +++FVNN +P+T   M  +Y+ +KD DG+LYM YS+E +
Sbjct: 67  LHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLMQDLYEMYKDEDGYLYMEYSSESS 126
Query: 119 FG 120
            G
Sbjct: 127 LG 128

>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure Length = 121

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 79/120 (65%), Gaps = 2/120 (1%)
Query: 3   MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSM 61
           M   K+FK   SF++R+E+ + I  ++P ++PVIIE+Y     LP ++KTK+LVP  ++M
Sbjct: 2   MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 61
Query: 62  GHFIYILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
              I I+  RL L   +A F+ VN +++   ++ +  +Y+S +D DGFLYM Y++++TFG
Sbjct: 62  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 121

>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light Chain-3 Length = 120

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 79/120 (65%), Gaps = 2/120 (1%)
Query: 3   MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSM 61
           M   K+FK   +F++R+E+ + I  ++P ++PVIIE+Y     LP ++KTK+LVP  ++M
Sbjct: 1   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 62  GHFIYILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
              I I+  RL L   +A F+ VN +++   ++ +  +Y+S KD DGFLYM Y++++TFG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120

>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex Length = 130

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSMGHFI 65
           K+FK   +F++R+E+ + I  ++P ++PVIIE+Y     LP ++KTK+LVP  ++M   I
Sbjct: 10  KTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELI 69
Query: 66  YILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            I+  RL L   +A F+ VN +++   ++ +  +Y+S KD DGFLYM Y++++TFG
Sbjct: 70  KIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125

>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex Length = 129

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSMGHFI 65
           K+FK   SF++R+E+ + I  ++P ++PVIIE+Y     LP ++KTK+LVP  ++M   I
Sbjct: 10  KTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELI 69
Query: 66  YILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            I+  RL L   +A F+ VN +++   ++ +  +Y+S +D DGFLYM Y++++TFG
Sbjct: 70  KIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125

>pdb|1UGM|A Chain A, Crystal Structure Of Lc3 Length = 125

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSMGHFI 65
           K+FK   SF++R+E+ + I  ++P ++PVIIE+Y     LP ++KTK+LVP  ++M   I
Sbjct: 10  KTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELI 69
Query: 66  YILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            I+  RL L   +A F+ VN +++   ++ +  +Y+S +D DGFLYM Y++++TFG
Sbjct: 70  KIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125

>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSMGHFI 65
           + FK   SF +R +E + I  ++P ++PVIIE+Y     LP ++KTK+LVP  ++M   +
Sbjct: 6   RPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELV 65
Query: 66  YILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
            I+  RL L P +A F+ VN +++   ++ +  IY+  KD DGFLYM Y++++TFG
Sbjct: 66  KIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	7e-46
3rui_B	118	Autophagy-related protein 8; autophagosome formati	8e-46
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	1e-44
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	2e-44
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	6e-43
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	2e-42

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117

 Score =  143 bits (362), Expect = 7e-46
 Identities = 56/114 (49%), Positives = 79/114 (69%)

Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIY 66
             FK +HS + R  ES  I AKYPDRVPVI+EK S + + D++K KYLVP D+++  F++
Sbjct: 3   WMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMW 62

Query: 67  ILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           I+  R+ L   KA+F+FV+ T+PQ++  M  +Y+  KD DGFLY+ YS E TFG
Sbjct: 63  IIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118

 Score =  143 bits (361), Expect = 8e-46
 Identities = 56/114 (49%), Positives = 86/114 (75%)

Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIY 66
            +FK+E+ F++R  ES+ I  ++ +R+PVI EK  ++D+P+++K KYLVP D+++G F+Y
Sbjct: 5   STFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVY 64

Query: 67  ILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           ++  R+ L P KA+F+FVN+TLP TA+ M +IY+  KD DGFLY+ YS E TFG
Sbjct: 65  VIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125

 Score =  140 bits (354), Expect = 1e-44
 Identities = 54/114 (47%), Positives = 77/114 (67%)

Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIY 66
             +K EHSF++R  E + I  KYPDRVPVI+EK  +  L D++K KYLVP D+++G F +
Sbjct: 11  FQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYF 70

Query: 67  ILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           ++  R+HL P  ALF FVNN +P T++ M S+Y+   D D FLY+ +S E  +G
Sbjct: 71  LIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119

 Score =  139 bits (352), Expect = 2e-44
 Identities = 47/116 (40%), Positives = 78/116 (67%)

Query: 5   KVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHF 64
           K   +K  H+F+ R  ++  +  ++PDR+P+I EK   +D+ ++++ K+LVP D+++G F
Sbjct: 4   KDSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQF 63

Query: 65  IYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           + +L  R+ LE   ALFV+ N+T+  ++++M  IY  +KD DGFLYM YS E TFG
Sbjct: 64  VSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130

 Score =  136 bits (343), Expect = 6e-43
 Identities = 47/120 (39%), Positives = 79/120 (65%), Gaps = 2/120 (1%)

Query: 3   MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSR-TDLPDMEKTKYLVPRDMSM 61
           M   K+FK   +F++R+E+ + I  ++P ++PVIIE+Y     LP ++KTK+LVP  ++M
Sbjct: 6   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 65

Query: 62  GHFIYILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
              I I+  RL L   +A F+ VN +++   ++ +  +Y+S KD DGFLYM Y++++TFG
Sbjct: 66  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110

 Score =  134 bits (338), Expect = 2e-42
 Identities = 50/107 (46%), Positives = 74/107 (69%)

Query: 8   SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
            +K +H F+ R +E + I  KYPDRVPVI+EK  +  +PD++K KYLVP D+++G F ++
Sbjct: 3   QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62

Query: 68  LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114
           +  R+HL P  ALF FVNNT+P T++ M  +Y+   + D FLY+ YS
Sbjct: 63  IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
3rui_B	118	Autophagy-related protein 8; autophagosome formati	100.0
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	100.0
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	100.0
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	100.0
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	100.0
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	100.0
4gdk_A	91	Ubiquitin-like protein ATG12; protein-protein conj	100.0
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	100.0
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	99.98
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	95.52
4gdk_B	275	Autophagy protein 5; protein-protein conjugate, pr	95.07
3vqi_A	274	ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto	95.06
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	94.18
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	86.59
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	85.11
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	84.66
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	84.02
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	83.64
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	82.84
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	82.64
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	81.55
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	81.14

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*

Probab=100.00  E-value=4.9e-54  Score=303.07  Aligned_cols=115  Identities=49%  Similarity=0.948  Sum_probs=112.3

Q ss_pred             CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384            6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN   85 (120)
Q Consensus         6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn   85 (120)
                      +++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|+++++||||||
T Consensus         4 ~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn   83 (118)
T 3rui_B            4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVN   83 (118)
T ss_dssp             --CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBT
T ss_pred             cchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEEC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      |++|++|++||+||++|||+||||||+||+++|||
T Consensus        84 ~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG  118 (118)
T 3rui_B           84 DTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG  118 (118)
T ss_dssp             TBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred             CccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence            99999999999999999999999999999999999

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3

Probab=100.00  E-value=4.3e-54  Score=305.85  Aligned_cols=116  Identities=47%  Similarity=0.885  Sum_probs=113.4

Q ss_pred             CCCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEE
Q 033384            5 KVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFV   84 (120)
Q Consensus         5 ~~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~V   84 (120)
                      .+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus         9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V   88 (125)
T 3m95_A            9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV   88 (125)
T ss_dssp             CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred             ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           85 NNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        85 n~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      ||++|++|++||+||++|||+||||||+||+++|||
T Consensus        89 nn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG  124 (125)
T 3m95_A           89 NNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG  124 (125)
T ss_dssp             TTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC-
T ss_pred             CCccCCccchHHHHHHHcCCCCCeEEEEecCccccC
Confidence            999999999999999999999999999999999999

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0

Probab=100.00  E-value=9.4e-54  Score=301.99  Aligned_cols=115  Identities=40%  Similarity=0.813  Sum_probs=111.3

Q ss_pred             CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384            6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN   85 (120)
Q Consensus         6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn   85 (120)
                      +.+||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|+++++||||||
T Consensus         5 ~~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn   84 (119)
T 3h9d_A            5 DSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTN   84 (119)
T ss_dssp             CCHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEET
T ss_pred             ccchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEEC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      |.+|++|++||+||++|||+||||||+||+++|||
T Consensus        85 ~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG  119 (119)
T 3h9d_A           85 DTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG  119 (119)
T ss_dssp             TEECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred             CcCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence            99999999999999999999999999999999999

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A

Probab=100.00  E-value=5.4e-52  Score=296.82  Aligned_cols=118  Identities=38%  Similarity=0.765  Sum_probs=114.0

Q ss_pred             CCCCCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCC-CCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEE
Q 033384            3 MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTD-LPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALF   81 (120)
Q Consensus         3 m~~~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~-~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slf   81 (120)
                      |+++.+||++||||+|++|+++||+|||+|||||||++++++ +|.|+++||+||+++||+||+.+||+||+|+++++||
T Consensus         6 ~~~m~~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alF   85 (130)
T 2zjd_A            6 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFF   85 (130)
T ss_dssp             -CCCCCHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEE
T ss_pred             ccchhHHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEE
Confidence            444459999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             E-EEcCccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           82 V-FVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        82 l-~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      | ||||.+|++|++||+||++|||+||||||+||+++|||
T Consensus        86 l~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG  125 (130)
T 2zjd_A           86 LLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG  125 (130)
T ss_dssp             EEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHH
T ss_pred             EEEECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccC
Confidence            9 99999999999999999999999999999999999998

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3

Probab=100.00  E-value=5.7e-51  Score=286.88  Aligned_cols=115  Identities=49%  Similarity=0.870  Sum_probs=112.9

Q ss_pred             CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384            6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN   85 (120)
Q Consensus         6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn   85 (120)
                      +++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|+++++||||||
T Consensus         2 ~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn   81 (117)
T 1eo6_A            2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD   81 (117)
T ss_dssp             CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBT
T ss_pred             CcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEEC
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      |.+|++|++||+||++|||+||||||+||+++|||
T Consensus        82 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG  116 (117)
T 1eo6_A           82 KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG  116 (117)
T ss_dssp             TBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC
T ss_pred             CEecCccchHHHHHHHhCCCCCEEEEEEeCCccCC
Confidence            99999999999999999999999999999999999

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A

Probab=100.00  E-value=2.2e-47  Score=265.91  Aligned_cols=110  Identities=45%  Similarity=0.884  Sum_probs=107.4

Q ss_pred             CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384            6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN   85 (120)
Q Consensus         6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn   85 (120)
                      +++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|+++++||||||
T Consensus         1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn   80 (110)
T 2r2q_A            1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN   80 (110)
T ss_dssp             CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred             CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384           86 NTLPQTASRMDSIYKSFKDADGFLYMCYST  115 (120)
Q Consensus        86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~  115 (120)
                      |.+|++|++||+||++|||+||||||+||+
T Consensus        81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~  110 (110)
T 2r2q_A           81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD  110 (110)
T ss_dssp             TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred             CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence            999999999999999999999999999985

>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A

Probab=100.00  E-value=6.4e-35  Score=197.24  Aligned_cols=85  Identities=26%  Similarity=0.472  Sum_probs=80.4

Q ss_pred             eEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384           35 VIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCY  113 (120)
Q Consensus        35 VIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLyl~Y  113 (120)
                      |+|.-.+.+++|.|+++||+||+++||++|+.+||+||+|+++++||||||| ++|++|++||+||++|| +||||||+|
T Consensus         6 v~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~Y   84 (91)
T 4gdk_A            6 IDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLHY   84 (91)
T ss_dssp             EEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEEE
T ss_pred             EEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEEE
Confidence            5555555589999999999999999999999999999999999999999999 89999999999999999 999999999


Q ss_pred             cccccCC
Q 033384          114 STEKTFG  120 (120)
Q Consensus       114 s~~~~fG  120 (120)
                      |+++|||
T Consensus        85 s~~~afG   91 (91)
T 4gdk_A           85 CKSQAWG   91 (91)
T ss_dssp             ESSCCCC
T ss_pred             eCccccC
Confidence            9999999

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=100.00  E-value=1.4e-34  Score=197.27  Aligned_cols=85  Identities=25%  Similarity=0.452  Sum_probs=80.8

Q ss_pred             CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCe
Q 033384           30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGF  108 (120)
Q Consensus        30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGf  108 (120)
                      |+||+|++++.  +++|.|+++||+||+++||++|+.+||+||+++   +||||||| ++|++|++||+||++||| |||
T Consensus        11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf   84 (96)
T 1wz3_A           11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK   84 (96)
T ss_dssp             -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred             CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence            78999999887  679999999999999999999999999999998   99999999 999999999999999998 999


Q ss_pred             EEEEecccccCC
Q 033384          109 LYMCYSTEKTFG  120 (120)
Q Consensus       109 Lyl~Ys~~~~fG  120 (120)
                      |||+||+++|||
T Consensus        85 Lyi~Ys~~~afG   96 (96)
T 1wz3_A           85 LVVNYACSMAWG   96 (96)
T ss_dssp             EEEEEESCSCC-
T ss_pred             EEEEEeCCcccC
Confidence            999999999999

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=99.98  E-value=7.5e-33  Score=187.11  Aligned_cols=85  Identities=16%  Similarity=0.396  Sum_probs=67.4

Q ss_pred             CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCe
Q 033384           30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGF  108 (120)
Q Consensus        30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGf  108 (120)
                      |+||-|-.  .+-+++|.|+++||+||+++||++|+.+||+||++   ++||||||| ++|++|++||+||++|| +|||
T Consensus         6 ~~Kv~vrf--k~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~   79 (91)
T 3w1s_C            6 IQKIQIKF--QPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE   79 (91)
T ss_dssp             CCEEEEEE--EECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred             CCeEEEEE--EecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence            34544444  33489999999999999999999999999999999   699999999 89999999999999999 7999


Q ss_pred             EEEEecccccCC
Q 033384          109 LYMCYSTEKTFG  120 (120)
Q Consensus       109 Lyl~Ys~~~~fG  120 (120)
                      |||+||+++|||
T Consensus        80 Lyv~Ys~~~afG   91 (91)
T 3w1s_C           80 LIVSYCASVAFG   91 (91)
T ss_dssp             EEEEEEC---CC
T ss_pred             EEEEEeCccccC
Confidence            999999999999

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A

Probab=95.52  E-value=0.027  Score=44.44  Aligned_cols=98  Identities=16%  Similarity=0.251  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHHHHhhCCCCcceEEEccCCC-CCCCCccceEEecC---CCchHhHHHHHhhhcC-CCCCCeEEEEEcCc
Q 033384           13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRT-DLPDMEKTKYLVPR---DMSMGHFIYILSSRLH-LEPGKALFVFVNNT   87 (120)
Q Consensus        13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~-~~p~L~k~Kflv~~---~~tv~~~~~~lRk~l~-l~~~~slfl~Vn~~   87 (120)
                      +.|++=..-..++...-+.+|||.|--.... ..+.++   =.++.   ..|++++..- +..+. +-+..+..+.+.+-
T Consensus       183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI  258 (297)
T 2dyo_A          183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI  258 (297)
T ss_dssp             TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred             hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence            4455444455566655678999999765432 111111   01111   2277765410 22221 22344468889997


Q ss_pred             cCCCCchHHHHHhhccCCCCeEEEEec
Q 033384           88 LPQTASRMDSIYKSFKDADGFLYMCYS  114 (120)
Q Consensus        88 lp~~~~~~~~lY~~~kd~DGfLyl~Ys  114 (120)
                      .|+.++.+.+||+.++..||||||.-.
T Consensus       259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~  285 (297)
T 2dyo_A          259 EIPWHMLLYDLYSKLRSFDGFLYITLV  285 (297)
T ss_dssp             EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred             cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence            777999999999999999999999865

>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B

Probab=95.07  E-value=0.077  Score=41.41  Aligned_cols=102  Identities=17%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHHHhhCC-----CCcceEEEccCCCCCCCCccceEEe---cCCCchHhHHHHHh-hhcCCC-CCCeEEE
Q 033384           13 HSFDERLEESKAIVAKYP-----DRVPVIIEKYSRTDLPDMEKTKYLV---PRDMSMGHFIYILS-SRLHLE-PGKALFV   82 (120)
Q Consensus        13 ~~~e~R~~e~~~~r~kyp-----~~ipVIvE~~~~~~~p~L~k~Kflv---~~~~tv~~~~~~lR-k~l~l~-~~~slfl   82 (120)
                      +.|++=..-..++....+     .+|||.|-... ++-|.++..-=-+   ....|++++...+= ....-+ ......+
T Consensus       160 ~d~~~F~~in~kL~~~~~~~~~~r~IPvRiY~~~-~~~~~iQ~~v~p~~~~g~~~TLg~~L~~~lP~lf~~~~~~~~~~v  238 (275)
T 4gdk_B          160 DRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTT-TERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQV  238 (275)
T ss_dssp             TCHHHHHHHHTGGGCCCTTSSSCSSCCEEEECTT-SSSSEECCCCCSBCTTSCBCBHHHHHHHHCGGGCC------CEEE
T ss_pred             CCHHHHHHHHHhhcCCCCccCccccceEEEEecC-CCCCccccCcCCcCCCCCcccHHHHHHHhcccccCCCcccccceE
Confidence            344433333444444433     67999997532 1212222110000   12357777755431 111101 1234567


Q ss_pred             EEcCccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384           83 FVNNTLPQTASRMDSIYKSFKDADGFLYMCYST  115 (120)
Q Consensus        83 ~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~  115 (120)
                      ++.+-.++.++.|.+||+++...||||||.-.-
T Consensus       239 iihGI~~pl~~pl~~l~~~l~y~DgFLhI~v~~  271 (275)
T 4gdk_B          239 MIHGIEPMLETPLQWLSEHLSYPDNFLHISIIP  271 (275)
T ss_dssp             EBTTBCCCTTSBHHHHHHHSCCTTSCEEEEEEE
T ss_pred             EEeCCcCCCCCCHHHHHHhccCCCceEEEEEEe
Confidence            788877899999999999999999999997653

>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}

Probab=95.06  E-value=0.028  Score=43.85  Aligned_cols=74  Identities=18%  Similarity=0.302  Sum_probs=48.1

Q ss_pred             CCCCcceEEEccCCCCCCCCccceEEec---CCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCC
Q 033384           29 YPDRVPVIIEKYSRTDLPDMEKTKYLVP---RDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDA  105 (120)
Q Consensus        29 yp~~ipVIvE~~~~~~~p~L~k~Kflv~---~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~  105 (120)
                      -...|||.|-... +  |.++.   +|+   ...|++++...   .+. .......+++.+-.++.++.|.+||+++.-.
T Consensus       196 ~~r~IPiRIy~~~-~--~~iQ~---~i~~~~~~~TLg~~L~~---~lp-~l~~~~~~iihGi~vp~~~pl~~l~~~~~y~  265 (274)
T 3vqi_A          196 KAKSLPVRVWTSN-Y--AVLQP---TVPVTDKELSVAELLDS---IKL-SSDGVKSVIIQGIDVSIEDNIFELYDIFASI  265 (274)
T ss_dssp             GCSBCCEEEECTT-S--CEECC---CCBCC---CBHHHHHHT---TTC-CC--CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred             cccceeEEEEcCC-C--CeEec---ccCCCCccccHHHHHHH---hcc-ccccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence            4578999997633 2  12211   233   36677776543   332 1112345778887779999999999999999


Q ss_pred             CCeEEEE
Q 033384          106 DGFLYMC  112 (120)
Q Consensus       106 DGfLyl~  112 (120)
                      ||||||.
T Consensus       266 DgFLhiv  272 (274)
T 3vqi_A          266 DGFLYLV  272 (274)
T ss_dssp             TSCEEEE
T ss_pred             CceEEEE
Confidence            9999986

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=94.18  E-value=0.08  Score=34.41  Aligned_cols=49  Identities=10%  Similarity=0.194  Sum_probs=41.3

Q ss_pred             ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384           49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS   97 (120)
Q Consensus        49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~   97 (120)
                      +.-+|.|+.+.+|.+++..-|++-+++++.+|.|...+--..+++++.+
T Consensus        20 ~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~D   68 (82)
T 3goe_A           20 EDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQS   68 (82)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGG
T ss_pred             CCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhh
Confidence            3458999999999999999999999999999999999855555666544

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=86.59  E-value=2.1  Score=26.57  Aligned_cols=47  Identities=13%  Similarity=0.120  Sum_probs=39.0

Q ss_pred             ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384           51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI   98 (120)
Q Consensus        51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l   98 (120)
                      -.|.|.++.+++.++....++.++++++--|+| ++.....+.|.+++
T Consensus        21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l   67 (79)
T 3a4r_A           21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL   67 (79)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            468899999999999999999999988656665 56556778888887

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=85.11  E-value=1.8  Score=26.11  Aligned_cols=59  Identities=7%  Similarity=0.078  Sum_probs=42.3

Q ss_pred             eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384           52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS  114 (120)
Q Consensus        52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys  114 (120)
                      .+-|..+.||+++...+..+.++++++--++| ++.....+.+++++-  -+ ++..|++...
T Consensus        17 ~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~~--i~-~~~~i~l~~~   75 (79)
T 2uyz_B           17 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQE   75 (79)
T ss_dssp             EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTEEEEEEEC
T ss_pred             EEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHcC--CC-CCCEEEEEEe
Confidence            46799999999999999999999887554444 665556778888751  11 2336666543

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=84.66  E-value=2.5  Score=27.26  Aligned_cols=56  Identities=14%  Similarity=0.234  Sum_probs=43.0

Q ss_pred             EecCCCchHhHHHHHhhhcCCCCCCeEEEEEc---C-ccCCCCchHHHHHhhccCCCCeEEE
Q 033384           54 LVPRDMSMGHFIYILSSRLHLEPGKALFVFVN---N-TLPQTASRMDSIYKSFKDADGFLYM  111 (120)
Q Consensus        54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn---~-~lp~~~~~~~~lY~~~kd~DGfLyl  111 (120)
                      -||.+.+++++...|++||+++++....-|=.   + ..+..++.|.+.++.=+  +|-|-+
T Consensus        19 rvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL   78 (83)
T 1oey_A           19 KTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTL   78 (83)
T ss_dssp             EECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEE
Confidence            49999999999999999999986655555544   2 45788899999998865  444444

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=84.02  E-value=6.9  Score=25.60  Aligned_cols=86  Identities=6%  Similarity=0.132  Sum_probs=55.5

Q ss_pred             HHhhCCCCcceEEEccCCCCCC--CCccce--EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHh
Q 033384           25 IVAKYPDRVPVIIEKYSRTDLP--DMEKTK--YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYK  100 (120)
Q Consensus        25 ~r~kyp~~ipVIvE~~~~~~~p--~L~k~K--flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~  100 (120)
                      ..+.+|..|-|.|.......-|  .|..+.  +-|+.+.||+++...|....+++++.-- |+.++.....+.+|++. .
T Consensus        18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y-~   95 (115)
T 1we7_A           18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQK-LQYEGIFIKDSNSLAYY-N   95 (115)
T ss_dssp             HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEE-EEETTEEECTTSBHHHH-T
T ss_pred             HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEE-EEECCEECCCCCCHHHC-C
Confidence            6677899899988653211001  133333  4599999999999999999999876543 33466555677788764 1


Q ss_pred             hccCCCCeEEEEec
Q 033384          101 SFKDADGFLYMCYS  114 (120)
Q Consensus       101 ~~kd~DGfLyl~Ys  114 (120)
                       -+ ++..|+|...
T Consensus        96 -i~-~g~~i~lv~r  107 (115)
T 1we7_A           96 -MA-SGAVIHLALK  107 (115)
T ss_dssp             -CC-SSCEEEEEEC
T ss_pred             -CC-CCCEEEEEEE
Confidence             11 3446777654

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=83.64  E-value=4.5  Score=27.01  Aligned_cols=62  Identities=10%  Similarity=0.165  Sum_probs=45.7

Q ss_pred             CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384           30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI   98 (120)
Q Consensus        30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l   98 (120)
                      +++|-|.|.-.. +     ..-.|.|..+.+++.++....++.++++.+--|+| ++.....+.|.+++
T Consensus        24 ~~~I~IkVk~~~-g-----~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl   85 (110)
T 2k8h_A           24 TALVAVKVVNAD-G-----AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL   85 (110)
T ss_dssp             CCCEEEEEEETT-S-----CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred             CCeEEEEEECCC-C-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            355666664322 1     23468899999999999999999999988666666 55445677899888

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=82.84  E-value=4.3  Score=24.76  Aligned_cols=75  Identities=7%  Similarity=0.015  Sum_probs=48.8

Q ss_pred             CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeE
Q 033384           30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFL  109 (120)
Q Consensus        30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfL  109 (120)
                      |..+-|.|.... +     +...+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++.=  -+ ++..|
T Consensus         5 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~~--i~-~g~~i   74 (87)
T 1wh3_A            5 SSGIQVFVKNPD-G-----GSYAYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIYG--IQ-DSDTL   74 (87)
T ss_dssp             SSSEEEEEEETT-T-----EEEEEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHHT--CC-TTEEE
T ss_pred             CCCEEEEEEcCC-C-----CEEEEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHCC--CC-CCCEE
Confidence            345666665422 1     1223568999999999999999999987654 3445666566777887751  11 34467


Q ss_pred             EEEec
Q 033384          110 YMCYS  114 (120)
Q Consensus       110 yl~Ys  114 (120)
                      ++...
T Consensus        75 ~l~~~   79 (87)
T 1wh3_A           75 ILSKK   79 (87)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77654

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=82.64  E-value=3.5  Score=25.32  Aligned_cols=56  Identities=7%  Similarity=0.097  Sum_probs=40.5

Q ss_pred             ecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384           55 VPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS  114 (120)
Q Consensus        55 v~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys  114 (120)
                      |+.+.||+++...|..+.++++++-- |+.++.....+.+|++.  .-+ ++..|++...
T Consensus        26 v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~gk~L~d~~tL~~~--~i~-~g~~i~l~~~   81 (89)
T 1wy8_A           26 VSRKATIEELRERVWALFDVRPECQR-LFYRGKQLENGYTLFDY--DVG-LNDIIQLLVR   81 (89)
T ss_dssp             ECTTCBHHHHHHHHHHHSCCCTTTEE-EEETTEECCSSSBHHHH--TCC-TTCEEEEEEC
T ss_pred             cCCCCCHHHHHHHHHHHHCcChhhEE-EEECCeECCCCCCHHHC--CCC-CCCEEEEEEe
Confidence            89999999999999999999876543 44466656677788775  112 3447777654

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=81.55  E-value=1.8  Score=26.24  Aligned_cols=48  Identities=10%  Similarity=0.199  Sum_probs=37.0

Q ss_pred             cceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384           50 KTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI   98 (120)
Q Consensus        50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l   98 (120)
                      .-.|.|.++.+++.++....++.++++++--|+| ++....++.|.+++
T Consensus        13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l   60 (72)
T 1wm3_A           13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL   60 (72)
T ss_dssp             EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE-TTEECCTTCCTTTT
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE-CCEEcCCCCCHHHc
Confidence            3468899999999999999999999987766766 44334555666554

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=81.14  E-value=2.5  Score=27.19  Aligned_cols=48  Identities=10%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             cceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384           50 KTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI   98 (120)
Q Consensus        50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l   98 (120)
                      .-.|.|.++.+++.++....++.++++++--|+| ++.....+.|.+++
T Consensus        17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl   64 (91)
T 2io0_B           17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL   64 (91)
T ss_dssp             EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            3468899999999999999999999987666666 55444566676665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	120
d1eo6a_	116	d.15.1.3 (A:) Golgi-associated ATPase enhancer of	9e-53
d3d32a1	118	d.15.1.3 (A:1-118) GABA(A) receptor associated pro	4e-50
d2zjda1	119	d.15.1.3 (A:2-120) Microtubule-associated proteins	9e-47

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  159 bits (404), Expect = 9e-53
 Identities = 56/114 (49%), Positives = 79/114 (69%)

Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIY 66
             FK +HS + R  ES  I AKYPDRVPVI+EK S + + D++K KYLVP D+++  F++
Sbjct: 3   WMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMW 62

Query: 67  ILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           I+  R+ L   KA+F+FV+ T+PQ++  M  +Y+  KD DGFLY+ YS E TFG
Sbjct: 63  IIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (387), Expect = 4e-50
 Identities = 50/114 (43%), Positives = 74/114 (64%)

Query: 7   KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIY 66
             +K EH F++R  E + I  KYPDRVPVI+EK  +  + D++K KYLVP D+++G F +
Sbjct: 5   FVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYF 64

Query: 67  ILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           ++  R+HL    ALF FVNN +P T++ M  +Y+   + D FLY+ YS E  +G
Sbjct: 65  LIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (365), Expect = 9e-47
 Identities = 46/117 (39%), Positives = 78/117 (66%), Gaps = 2/117 (1%)

Query: 6   VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSR-TDLPDMEKTKYLVPRDMSMGHF 64
            K+FK   +F++R+E+ + I  ++P ++PVIIE+Y     LP ++KTK+LVP  ++M   
Sbjct: 3   EKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSEL 62

Query: 65  IYILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
           I I+  RL L   +A F+ VN +++   ++ +  +Y+S KD DGFLYM Y++++TFG
Sbjct: 63  IKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d3d32a1	118	GABA(A) receptor associated protein GABARAP {Human	100.0
d1eo6a_	116	Golgi-associated ATPase enhancer of 16 kD, Gate-16	100.0
d2zjda1	119	Microtubule-associated proteins 1A/1B light chain	100.0
d1wz3a1	84	Autophagy-related protein 12b (APG12b) {Thale cres	99.89
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	89.77
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	89.73
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	88.39
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	85.01
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	84.43
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	82.7
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	80.38

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-52  Score=294.25  Aligned_cols=115  Identities=43%  Similarity=0.859  Sum_probs=113.3

Q ss_pred             CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384            6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN   85 (120)
Q Consensus         6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn   85 (120)
                      +++||++||||+|++|++++++|||+|||||||+++++++|.|+++|||||+|+||+||+.+||+||+|++++|||||||
T Consensus         4 ~~~fk~~~s~e~R~~es~~i~~KyPdriPVIve~~~~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alflfvn   83 (118)
T d3d32a1           4 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVN   83 (118)
T ss_dssp             CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEBT
T ss_pred             cchhcccCCHHHHHHHHHHHHHHCCCCceEEEEEcCCCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEEEEC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      |.+|+++++||+||++|||+||||||+||+|+|||
T Consensus        84 ~~~~~~~~ti~~lY~~~kdeDGfLYi~Ys~entFG  118 (118)
T d3d32a1          84 NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG  118 (118)
T ss_dssp             TBCCCTTCBHHHHHHHHCCTTSCEEEEEESCTTCC
T ss_pred             CcccCccccHHHHHHHhCCCCcEEEEEEecccccC
Confidence            99999999999999999999999999999999999

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-52  Score=292.66  Aligned_cols=115  Identities=49%  Similarity=0.870  Sum_probs=113.2

Q ss_pred             CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384            6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN   85 (120)
Q Consensus         6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn   85 (120)
                      +++||++||||+|++|+++|++|||+|||||||+++++++|.||+.|||||.|+|++||+.+||+||+|++++|||||||
T Consensus         2 ~~~fk~~~sfe~R~~es~~i~~KyP~rIPVIve~~~~~~l~~ldk~KfLVP~dltv~qf~~vIRkrl~l~~~~alflfv~   81 (116)
T d1eo6a_           2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD   81 (116)
T ss_dssp             CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBT
T ss_pred             CccccccCCHHHHHHHHHHHHHHCCCCceEEEEECCcCcCCcccCcEEeecCCCcHHHHHHHHHHHcCCCccceEEEEEC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      |.+|+++++||+||++|||+||||||+|++|+|||
T Consensus        82 ~~l~~~s~~i~~lY~~~KdeDGfLYi~Ys~entFG  116 (116)
T d1eo6a_          82 KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG  116 (116)
T ss_dssp             TBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC
T ss_pred             CcccchhhhHHHHHHHcCCCCcEEEEEEeccccCC
Confidence            99999999999999999999999999999999999

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-52  Score=292.11  Aligned_cols=117  Identities=39%  Similarity=0.789  Sum_probs=113.2

Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCC-CCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEE
Q 033384            4 GKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRT-DLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFV   82 (120)
Q Consensus         4 ~~~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~-~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl   82 (120)
                      |++.+||++||||+|++|+++|++|||+|||||||+++++ ++|+|+++|||||+++||+||+++||+||++++++||||
T Consensus         1 p~~~~fk~~~~fe~R~~es~~i~~KyP~riPVIve~~~~~~~lp~Ldk~KfLVp~d~tv~qf~~~iRkrl~l~~~~alFl   80 (119)
T d2zjda1           1 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFL   80 (119)
T ss_dssp             CCCCCHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEE
T ss_pred             CCcCCccccCCHHHHHHHHHHHHHHCCCcceEEEEECCCCCcCccccceEEEEecCccHHHHHHHHHHHhCCCCcceEEE
Confidence            5788999999999999999999999999999999998764 599999999999999999999999999999999999999


Q ss_pred             EEcC-ccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384           83 FVNN-TLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG  120 (120)
Q Consensus        83 ~Vn~-~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG  120 (120)
                      |||+ .+|+++++||+||++|||+||||||+||+++|||
T Consensus        81 fvn~~~~p~~~~~i~~lY~~~kdeDGfLYi~Ys~entFG  119 (119)
T d2zjda1          81 LVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG  119 (119)
T ss_dssp             EETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHH
T ss_pred             EEcCCccCCchhHHHHHHHHcCCCCCeEEEEEeccccCC
Confidence            9996 8999999999999999999999999999999998

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=2e-23  Score=136.97  Aligned_cols=75  Identities=25%  Similarity=0.474  Sum_probs=71.3

Q ss_pred             CCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEEEEecccccC
Q 033384           41 SRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCYSTEKTF  119 (120)
Q Consensus        41 ~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~f  119 (120)
                      +-+++|.|+++||.|.++.+|+.++.+||++|+   .+++|+|||+ |+|++|+++|+||+||+ .||.|.++||.++||
T Consensus         9 ~iG~aPilk~~~~kv~~~~~f~~vi~FLrk~Lk---~dsvf~Yin~sFaPspDe~vg~Ly~~f~-~~gkLvv~Y~~t~Aw   84 (84)
T d1wz3a1           9 ATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPDESVIDLYNNFG-FDGKLVVNYACSMAW   84 (84)
T ss_dssp             ECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---CSSCEEEEEEEECCCTTSBHHHHHHHHC-BTTBEEEEEESCSCC
T ss_pred             ecCCCcccccceEEECCCCchHHHHHHHHHHhc---CCeEEEEEccccCCChhhHHHHHHHhcC-CCCEEEEEEeccccC
Confidence            338899999999999999999999999999997   5799999999 99999999999999997 899999999999998

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=89.77  E-value=0.12  Score=30.91  Aligned_cols=47  Identities=9%  Similarity=0.186  Sum_probs=37.8

Q ss_pred             ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384           51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI   98 (120)
Q Consensus        51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l   98 (120)
                      ..|.|..+.+++.++..+.++.++++++--|+| ++.....+.|++++
T Consensus        16 ~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f-~G~~l~~~~T~~~~   62 (79)
T d1euvb_          16 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL   62 (79)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred             EEEEECCCCcHHHHHHHHHHHhCCChHhEEEEE-CCEEeCCCCCHHHC
Confidence            468899999999999999999999987755555 77656666677654

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.73  E-value=1.1  Score=26.00  Aligned_cols=71  Identities=17%  Similarity=0.325  Sum_probs=48.5

Q ss_pred             cceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEE
Q 033384           33 VPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMC  112 (120)
Q Consensus        33 ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~  112 (120)
                      |-|+|+... +     +.-.+-|.++.||+++...|-.+.++++++ .-|+.++.....+.+|++ |. =+ ++..|+|.
T Consensus         2 i~i~vk~~~-G-----k~~~v~V~~~~tV~~lK~~I~~~~~i~~~~-q~Li~~Gk~L~d~~tL~~-y~-I~-~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRL-G-----KKVRVKCLAEDSVGDFKKVLSLQIGTQPNK-IVLQKGGSVLKDHISLED-YE-VH-DQTNLELY   71 (73)
T ss_dssp             EEEEEEETT-T-----EEEEEEECTTSBHHHHHHHHHHHHCCTTTS-EEEESSSCEECTTSBHHH-HT-CC-TTEEEEEE
T ss_pred             eEEEEECCC-C-----CEEEEEECCcCcHHHHHHHHHHhhcccccE-EEEEEEeEEecccCcHHH-cC-CC-CCCEEEEE
Confidence            456665532 1     223456999999999999999999999865 455556655577888887 22 21 34477777


Q ss_pred             e
Q 033384          113 Y  113 (120)
Q Consensus       113 Y  113 (120)
                      |
T Consensus        72 ~   72 (73)
T d1m94a_          72 Y   72 (73)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.39  E-value=0.61  Score=29.21  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             CCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCC-eE
Q 033384           31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADG-FL  109 (120)
Q Consensus        31 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DG-fL  109 (120)
                      ..|.|+|.-.. +     ++-.+-|.++.||++|...|..+.++++++-- |+.++.....+.+|++    |+=.|| .|
T Consensus        27 ~~i~V~V~~~~-G-----k~~~v~V~p~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~d----ygI~~GstI   95 (100)
T d1uh6a_          27 TMIEVVCNDRL-G-----KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIV-LKKWYTIFKDHVSLGD----YEIHDGMNL   95 (100)
T ss_dssp             CEEEEEEECSS-S-----SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCE-EEETTEECCSSCBHHH----HTCCTTEEE
T ss_pred             ceEEEEEECCC-C-----CEEEEEECCcChHHHHHHHHHHHHCCCcceEE-EEEEeecccCcCCHHH----cCCCCCCEE
Confidence            44667775432 1     23456799999999999999999999986544 4446666778888775    333444 44


Q ss_pred             EEEe
Q 033384          110 YMCY  113 (120)
Q Consensus       110 yl~Y  113 (120)
                      +|.|
T Consensus        96 ~L~~   99 (100)
T d1uh6a_          96 ELYY   99 (100)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            4443

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=1  Score=26.91  Aligned_cols=58  Identities=10%  Similarity=0.091  Sum_probs=43.1

Q ss_pred             eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384           52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY  113 (120)
Q Consensus        52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y  113 (120)
                      .+-|..+.||.++...|..+.++++++--.+| ++.....+.+|++ |.= + ++-.|+|.-
T Consensus        21 ~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~d~~tL~~-y~I-~-~~stl~l~~   78 (87)
T d1wh3a_          21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQVLQDWLGLGI-YGI-Q-DSDTLILSK   78 (87)
T ss_dssp             EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTEECCSSSBHHH-HTC-C-TTEEEEEEE
T ss_pred             EEEECCcCcHHHHHHHHHHHHCcChHHeEEEe-eceEcCCCCcHHH-cCC-C-CCCEEEEEe
Confidence            34589999999999999999999987765555 6666678889987 322 1 344676654

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.43  E-value=0.92  Score=26.53  Aligned_cols=47  Identities=6%  Similarity=0.035  Sum_probs=38.1

Q ss_pred             ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384           51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI   98 (120)
Q Consensus        51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l   98 (120)
                      -.|.|..+.+++.++....++.++++++.-|+ .++.....+.|++++
T Consensus        15 v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~-fdG~~l~~~~T~~~l   61 (77)
T d2uyzb1          15 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKEL   61 (77)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCCHHHc
Confidence            36899999999999999999999988776666 566445556788887

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.70  E-value=1.6  Score=25.57  Aligned_cols=55  Identities=5%  Similarity=0.063  Sum_probs=40.5

Q ss_pred             ecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384           55 VPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY  113 (120)
Q Consensus        55 v~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y  113 (120)
                      |..+.||+++...|..+.+++++.--.+| ++.....+.+|++.   -=.++..|++..
T Consensus        19 v~~~~TV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~d~~tL~~y---~I~~~s~i~lv~   73 (76)
T d1wy8a1          19 VSRKATIEELRERVWALFDVRPECQRLFY-RGKQLENGYTLFDY---DVGLNDIIQLLV   73 (76)
T ss_dssp             ECTTCBHHHHHHHHHHHSCCCTTTEEEEE-TTEECCSSSBHHHH---TCCTTCEEEEEE
T ss_pred             cCCCChHHHHHHHHHHHHCCCchhcEEEE-EeeEecCCCCHHHc---CCCCCCEEEEEE
Confidence            89999999999999999999876655554 66556778888753   112455777654

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.38  E-value=1.4  Score=25.76  Aligned_cols=59  Identities=19%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEec
Q 033384           51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYS  114 (120)
Q Consensus        51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys  114 (120)
                      -.+-|.++.||+++...|..+.++++++- -|+.++.....+.+|++    |+= +|..|+|.-+
T Consensus        16 ~~l~V~~~~tV~~lK~~I~~~~~ip~~~q-rLi~~Gk~L~d~~tL~~----y~I~~~sti~lvi~   75 (80)
T d1ttna1          16 LKLVVRSTDTVFHMKRRLHAAEGVEPGSQ-RWFFSGRPLTDKMKFEE----LKIPKDYVVQVIVS   75 (80)
T ss_dssp             EEEEECTTSHHHHHHHHHHHTTCCCSTTC-EEEETTEECCTTSHHHH----CCCSSSCEEEEECC
T ss_pred             EEEEECCcCcHHHHHHHHHHHhCCCcccE-EEEECceEcCCCCcHHH----cCCCCCCEEEEEec
Confidence            35679999999999999999999987765 44455655567888887    333 4557776543